BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00028037
         (281 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

prf||1211235P rpoC-like ORF 236                                       150   4e-34
pir||A05030 rpoC protein homolog - common tobacco chloroplast         148   2e-33
emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera]   130   4e-28
emb|CBI36146.3| unnamed protein product [Vitis vinifera]              110   5e-22
ref|XP_002519783.1| DNA-directed RNA polymerase beta chain, puta...   107   5e-21
ref|XP_013464770.1| DNA-directed RNA polymerase subunit beta [Me...    87   2e-15
gb|KRH63914.1| hypothetical protein GLYMA_04G204000 [Glycine max]      87   5e-15
ref|YP_009171589.1| RNA polymerase beta' subunit (chloroplast) [...    87   5e-15
gb|AEH42621.1| RNA polymerase beta subunit [Linum usitatissimum]       86   8e-15
emb|CED95151.2| RpoC2; RNA polymerase beta'' subunit (chloroplas...    86   1e-14
gb|AKZ23923.1| RNA polymerase beta'' subunit (plastid) [Symphori...    86   1e-14
sp|Q9THV5.1|RPOC2_SINAL RecName: Full=DNA-directed RNA polymeras...    86   1e-14
ref|YP_009115405.1| RpoC2; RNA polymerase beta'' subunit (chloro...    86   1e-14
gb|ADD31154.1| RNA polymerase beta'' subunit protein (chloroplas...    86   1e-14
ref|YP_007889851.1| RNA polymerase beta' subunit [Francoa sonchi...    86   1e-14
ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasili...    86   1e-14
gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Stap...    86   1e-14
ref|YP_009129608.1| RNA polymerase beta'' subunit (chloroplast) ...    86   1e-14
gb|ALN11593.1| RNA polymerase beta subunit (chloroplast) [Scutel...    85   2e-14
gb|ALB78337.1| RNA polymerase beta'' subunit (chloroplast) [Heuc...    85   2e-14

>prf||1211235P rpoC-like ORF 236
          Length = 236

 Score =  150 bits (379), Expect = 4e-34
 Identities = 75/90 (83%), Positives = 81/90 (90%)
 Frame = -1

Query: 272 FYDTSVNSGLSGSSRTIVPEFLRESRSRKGSFPIIDSNPLANPTQRNMEVLMAERANLAF 93
           FYDT   SGLSGS+R+IVPEF+RESRS KGSF I DSNPL+N TQRNMEVLMAERANL F
Sbjct: 1   FYDTRGTSGLSGSARSIVPEFIRESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANLVF 60

Query: 92  HNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           HNK I+GTA+KRLISRLIDHFGMAYTSHIL
Sbjct: 61  HNKAINGTAMKRLISRLIDHFGMAYTSHIL 90


>pir||A05030 rpoC protein homolog - common tobacco chloroplast
          Length = 236

 Score =  148 bits (373), Expect = 2e-33
 Identities = 74/89 (83%), Positives = 80/89 (89%)
 Frame = -1

Query: 269 YDTSVNSGLSGSSRTIVPEFLRESRSRKGSFPIIDSNPLANPTQRNMEVLMAERANLAFH 90
           YDT   SGLSGS+R+IVPEF+RESRS KGSF I DSNPL+N TQRNMEVLMAERANL FH
Sbjct: 2   YDTRGTSGLSGSARSIVPEFIRESRSIKGSFTITDSNPLSNSTQRNMEVLMAERANLVFH 61

Query: 89  NKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           NK I+GTA+KRLISRLIDHFGMAYTSHIL
Sbjct: 62  NKAINGTAMKRLISRLIDHFGMAYTSHIL 90


>emb|CAN83637.1| hypothetical protein VITISV_032940 [Vitis vinifera]
          Length = 203

 Score =  130 bits (327), Expect = 4e-28
 Identities = 65/78 (83%), Positives = 69/78 (88%)
 Frame = -1

Query: 236 SSRTIVPEFLRESRSRKGSFPIIDSNPLANPTQRNMEVLMAERANLAFHNKVIDGTAIKR 57
           + R IV EFLRE+RSRKGSF   DSNPL+NPTQRNM VLM ERANL FHNKVIDGTA+KR
Sbjct: 72  AERIIVLEFLREARSRKGSFTTTDSNPLSNPTQRNMGVLMTERANLVFHNKVIDGTAMKR 131

Query: 56  LISRLIDHFGMAYTSHIL 3
           LISRLIDHFGMAYTSHIL
Sbjct: 132 LISRLIDHFGMAYTSHIL 149


>emb|CBI36146.3| unnamed protein product [Vitis vinifera]
          Length = 510

 Score =  110 bits (274), Expect = 5e-22
 Identities = 54/66 (81%), Positives = 58/66 (87%)
 Frame = -1

Query: 200 SRSRKGSFPIIDSNPLANPTQRNMEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMA 21
           +RSRKGSF   DSNPL+N TQ+NM VLM ER NL FHNKVIDGTA+KRLISRLIDHFGMA
Sbjct: 157 ARSRKGSFTTTDSNPLSNLTQQNMGVLMTERVNLVFHNKVIDGTAMKRLISRLIDHFGMA 216

Query: 20  YTSHIL 3
           YTSHIL
Sbjct: 217 YTSHIL 222


>ref|XP_002519783.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
           gi|223541022|gb|EEF42579.1| DNA-directed RNA polymerase
           beta chain, putative [Ricinus communis]
          Length = 349

 Score =  107 bits (266), Expect = 5e-21
 Identities = 53/62 (85%), Positives = 57/62 (91%)
 Frame = -1

Query: 188 KGSFPIIDSNPLANPTQRNMEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSH 9
           K  FPIIDSNPL+N T+RNMEVLMA+RANL FHNKVID TAIKRLISRLID+FGMAYTSH
Sbjct: 177 KRKFPIIDSNPLSNSTRRNMEVLMAKRANLVFHNKVIDRTAIKRLISRLIDNFGMAYTSH 236

Query: 8   IL 3
           IL
Sbjct: 237 IL 238


>ref|XP_013464770.1| DNA-directed RNA polymerase subunit beta [Medicago truncatula]
           gi|657399322|gb|KEH38805.1| DNA-directed RNA polymerase
           subunit beta [Medicago truncatula]
          Length = 99

 Score = 87.4 bits (215), Expect(2) = 2e-15
 Identities = 42/49 (85%), Positives = 44/49 (89%)
 Frame = -1

Query: 149 NPTQRNMEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           NPT+ NMEVLMAERANL FHN VI GTAIKRLISRL+DHFGM YTSHIL
Sbjct: 14  NPTEWNMEVLMAERANLVFHNNVIGGTAIKRLISRLMDHFGMTYTSHIL 62



 Score = 21.2 bits (43), Expect(2) = 2e-15
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 180 FSNH*LKPIGEPHSAE 133
           FSNH LK I EP+  E
Sbjct: 2   FSNHSLKFIVEPNPTE 17


>gb|KRH63914.1| hypothetical protein GLYMA_04G204000 [Glycine max]
          Length = 73

 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 43/49 (87%), Positives = 45/49 (91%)
 Frame = -1

Query: 149 NPTQRNMEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           NPT+ NMEVLMAE ANL FHNKVI GTAIKRLISRLIDHFGMA+TSHIL
Sbjct: 9   NPTEWNMEVLMAEWANLVFHNKVIGGTAIKRLISRLIDHFGMAHTSHIL 57


>ref|YP_009171589.1| RNA polymerase beta' subunit (chloroplast) [Elaeagnus macrophylla]
           gi|814936635|gb|AKE36486.1| RNA polymerase beta' subunit
           (chloroplast) [Elaeagnus macrophylla]
          Length = 1383

 Score = 87.0 bits (214), Expect = 5e-15
 Identities = 42/43 (97%), Positives = 43/43 (100%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANLAFHNKVIDGTAIKRLISRL+DHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLAFHNKVIDGTAIKRLISRLVDHFGMAYTSHIL 43


>gb|AEH42621.1| RNA polymerase beta subunit [Linum usitatissimum]
          Length = 1380

 Score = 86.3 bits (212), Expect = 8e-15
 Identities = 42/43 (97%), Positives = 43/43 (100%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANLA+HNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLAYHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>emb|CED95151.2| RpoC2; RNA polymerase beta'' subunit (chloroplast) [Acacia
           ligulata]
          Length = 1374

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 42/43 (97%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>gb|AKZ23923.1| RNA polymerase beta'' subunit (plastid) [Symphoricarpos
           occidentalis]
          Length = 1392

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 42/43 (97%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>sp|Q9THV5.1|RPOC2_SINAL RecName: Full=DNA-directed RNA polymerase subunit beta''; AltName:
           Full=PEP; AltName: Full=Plastid-encoded RNA polymerase
           subunit beta''; Short=RNA polymerase subunit beta''
           (chloroplast) [Sinapis alba] gi|5725463|emb|CAB48415.2|
           RNA polymerase A beta prime prime subunit [Sinapis alba]
          Length = 1384

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 42/43 (97%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>ref|YP_009115405.1| RpoC2; RNA polymerase beta'' subunit (chloroplast) [Acacia
           ligulata]
          Length = 1373

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 42/43 (97%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>gb|ADD31154.1| RNA polymerase beta'' subunit protein (chloroplast) [Lonicera
           japonica]
          Length = 1390

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 42/43 (97%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>ref|YP_007889851.1| RNA polymerase beta' subunit [Francoa sonchifolia]
           gi|386268355|gb|AFJ00461.1| RNA polymerase beta' subunit
           [Francoa sonchifolia]
          Length = 1401

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 42/43 (97%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLGFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>ref|YP_004327651.1| RNA polymerase beta'' subunit [Hevea brasiliensis]
           gi|308523496|gb|ADO33546.1| RNA polymerase beta''
           subunit [Hevea brasiliensis]
          Length = 1395

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 42/43 (97%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>gb|ABV65777.1| RNA polymerase beta'' subunit (chloroplast) [Staphylea colchica]
          Length = 1390

 Score = 85.9 bits (211), Expect = 1e-14
 Identities = 42/43 (97%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>ref|YP_009129608.1| RNA polymerase beta'' subunit (chloroplast) [Paphiopedilum niveum]
           gi|655167143|gb|AIC82657.1| RNA polymerase beta''
           subunit (chloroplast) [Paphiopedilum niveum]
          Length = 1361

 Score = 85.5 bits (210), Expect = 1e-14
 Identities = 42/43 (97%), Positives = 43/43 (100%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERA+LAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERADLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 43


>gb|ALN11593.1| RNA polymerase beta subunit (chloroplast) [Scutellaria insignis]
          Length = 1401

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 41/43 (95%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTA+KRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHIL 43


>gb|ALB78337.1| RNA polymerase beta'' subunit (chloroplast) [Heuchera parviflora
           var. saurensis]
          Length = 1376

 Score = 84.7 bits (208), Expect = 2e-14
 Identities = 41/43 (95%), Positives = 42/43 (97%)
 Frame = -1

Query: 131 MEVLMAERANLAFHNKVIDGTAIKRLISRLIDHFGMAYTSHIL 3
           MEVLMAERANL FHNKVIDGTA+KRLISRLIDHFGMAYTSHIL
Sbjct: 1   MEVLMAERANLVFHNKVIDGTAMKRLISRLIDHFGMAYTSHIL 43