BLASTX nr result
ID: Ziziphus21_contig00019814
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ziziphus21_contig00019814
(1680 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 782 0.0
ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV su... 749 0.0
ref|XP_008358315.1| PREDICTED: DNA-directed RNA polymerase IV su... 747 0.0
ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV su... 747 0.0
ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV su... 747 0.0
ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV su... 747 0.0
ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV su... 746 0.0
ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV su... 746 0.0
gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium r... 746 0.0
ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV su... 746 0.0
ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV su... 740 0.0
ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV su... 740 0.0
ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV su... 740 0.0
emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera] 739 0.0
ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 732 0.0
ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-... 731 0.0
ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricin... 716 0.0
ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV su... 713 0.0
ref|XP_012488706.1| PREDICTED: DNA-directed RNA polymerase IV su... 704 0.0
gb|KJB39621.1| hypothetical protein B456_007G022200 [Gossypium r... 700 0.0
>ref|XP_008238796.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Prunus mume]
Length = 1452
Score = 782 bits (2019), Expect = 0.0
Identities = 400/560 (71%), Positives = 456/560 (81%), Gaps = 1/560 (0%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTDDFWDFIPKDAQQEESCMKPNKRVLSHAQ 1500
MKFKVS+++LF RS I E N L D+WDFIPKDAQQ+ESCMKPNKRVLSHAQ
Sbjct: 136 MKFKVSTRELFKRSAIIAEANGIL------PADYWDFIPKDAQQDESCMKPNKRVLSHAQ 189
Query: 1499 VHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFDERTRAYK 1320
VHYLL +DP FI+K V +T+SLF+ F VTPN HRVTE ++SFSNGQRL+FDERTRAY+
Sbjct: 190 VHYLLKDVDPKFIEKIVPKTNSLFMGSFLVTPNCHRVTEVMHSFSNGQRLMFDERTRAYR 249
Query: 1319 KLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGLRWIKDVI 1140
KLVDF+G AN+LGSRVLDCLKISKL+ PSKD + QQK+I+D PSKT GLRWIKDV+
Sbjct: 250 KLVDFKGVANELGSRVLDCLKISKLN-SEKPSKDFISAQQKNIKDDPSKTSGLRWIKDVV 308
Query: 1139 LGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWNLRLIEKG 960
LGKRSDHCFR VVVGDPNIKL+EIGIPC IAER+ +SE LNRWN++K D NLRL+ KG
Sbjct: 309 LGKRSDHCFRTVVVGDPNIKLSEIGIPCQIAERLQISENLNRWNIEKLDASCNLRLMVKG 368
Query: 959 EIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSVKVLPITS 780
E++VRR LV VR TDEL +GDTIYRPLSDGDI+LINRPPSIHQHSLIALSVK+LPITS
Sbjct: 369 EMHVRRKGSLVWVRRTDELQMGDTIYRPLSDGDIVLINRPPSIHQHSLIALSVKILPITS 428
Query: 779 VVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRNLLSFSQD 600
VVSINP+CCSPFR DFDGDCLHGY+PQS D RVELRELVALD+QL N QSGRNLLS SQD
Sbjct: 429 VVSINPLCCSPFRGDFDGDCLHGYIPQSNDARVELRELVALDKQLINGQSGRNLLSLSQD 488
Query: 599 SLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLFSMLLPSG 420
SLTAAHLIMED LLNL EMQQLEMFC PA+IKAPSL+ WTGKQ+FSMLLPS
Sbjct: 489 SLTAAHLIMEDGTLLNLLEMQQLEMFCWDVLPSPAVIKAPSLNSHAWTGKQVFSMLLPSD 548
Query: 419 FDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAAQEVLCEW 240
FDY AS+GV I+NGEL+S SEGSSWLRD GNLFQSL+ + G VLD L AAQEVLCEW
Sbjct: 549 FDYDFASDGVYIKNGELLS-SEGSSWLRDTGGNLFQSLVNHFQGQVLDFLFAAQEVLCEW 607
Query: 239 LSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKR-LVNYFQEFLIENNTE 63
LSMRGLSVSLADLYL +DS SR +M+EI GLQEAEQ C FK+ LV+ QEFL+ E
Sbjct: 608 LSMRGLSVSLADLYLASDSGSRNNLMEEISCGLQEAEQACIFKQLLVDNCQEFLM-GCAE 666
Query: 62 DNQRNVSIQMEYLLYKRQTS 3
+N+ ++ EY +++Q S
Sbjct: 667 ENRSPLTFDAEYFCHEKQKS 686
>ref|XP_009377912.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Pyrus x
bretschneideri] gi|694406181|ref|XP_009377913.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
[Pyrus x bretschneideri]
Length = 1466
Score = 749 bits (1934), Expect = 0.0
Identities = 372/559 (66%), Positives = 447/559 (79%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTDDFWDFIPKDAQQEESCMKPNKRVLSHAQ 1500
MKF+VS+++LF RS I VE + L DFWDFIPKD QQ+ESC+KPNKR+LSHAQ
Sbjct: 146 MKFRVSTRELFKRSCIIVEASGIL------PSDFWDFIPKDEQQDESCVKPNKRILSHAQ 199
Query: 1499 VHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFDERTRAYK 1320
VH+LL +DP+FI K+V TDSL ++ F VTPN HRVTEF+++F+NGQRL+FD RT AY+
Sbjct: 200 VHHLLKDVDPNFIAKFVPITDSLSMDSFLVTPNCHRVTEFMHAFANGQRLMFDHRTTAYR 259
Query: 1319 KLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGLRWIKDVI 1140
KLVDF+G AN+LGSRVL+CLKISKL+ P DL+ Q K+++D PSK+ GLRWIKDV
Sbjct: 260 KLVDFKGVANELGSRVLECLKISKLN-SEKPGNDLIAAQLKNVKDDPSKSSGLRWIKDVF 318
Query: 1139 LGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWNLRLIEKG 960
LGKR+DHCFR VVVGDPNIKL+EIGIP +IAERMH++E LNRWNL++ NL L+ K
Sbjct: 319 LGKRTDHCFRTVVVGDPNIKLSEIGIPSNIAERMHIAENLNRWNLERLGATCNLLLMFKQ 378
Query: 959 EIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSVKVLPITS 780
++VRR +V V TDEL +GD IYRPLSDGDI+LINRPPSIHQHSLIAL VK+LP
Sbjct: 379 VMHVRRKGSIVLVHQTDELQMGDAIYRPLSDGDIVLINRPPSIHQHSLIALFVKILPAAP 438
Query: 779 VVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRNLLSFSQD 600
VVSINP+CCSPFR DFDGDCLHGYVPQSVD +VELRELVALD+QL N QSG NLLS SQD
Sbjct: 439 VVSINPLCCSPFRGDFDGDCLHGYVPQSVDAKVELRELVALDKQLINGQSGTNLLSLSQD 498
Query: 599 SLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLFSMLLPSG 420
SLTAAHLI+ED VLLN +MQQL+ FC ++ PAIIKAPSLDGP WTGKQ+FSMLLP G
Sbjct: 499 SLTAAHLILEDGVLLNRSQMQQLQRFCCNELPSPAIIKAPSLDGPAWTGKQVFSMLLPLG 558
Query: 419 FDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAAQEVLCEW 240
FDY A +GVC+RNGEL+S SEGSSWLRD GNL+QSL+K+C G VLDILHAAQEV CEW
Sbjct: 559 FDYDFAPDGVCVRNGELLS-SEGSSWLRDTSGNLYQSLVKHCQGPVLDILHAAQEVFCEW 617
Query: 239 LSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRLVNYFQEFLIENNTED 60
LSMRGL+VSL+DLYL +DS SR +M+EIF GL+EAEQ C F++L+ L+ E+
Sbjct: 618 LSMRGLTVSLSDLYLASDSCSRNNLMEEIFCGLREAEQACIFRQLLVDSSRELLMGCAEE 677
Query: 59 NQRNVSIQMEYLLYKRQTS 3
NQ V+ ++Y +++Q S
Sbjct: 678 NQSPVTSDVDYFCHEKQKS 696
>ref|XP_008358315.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Malus
domestica]
Length = 1287
Score = 747 bits (1929), Expect = 0.0
Identities = 371/559 (66%), Positives = 448/559 (80%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTDDFWDFIPKDAQQEESCMKPNKRVLSHAQ 1500
MKF+VS+++LF RS I VE + L D+WDFIPKDAQQ+ESC+KPNKR+LSHAQ
Sbjct: 125 MKFRVSTRELFKRSCIIVEASGIL------PSDYWDFIPKDAQQDESCVKPNKRILSHAQ 178
Query: 1499 VHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFDERTRAYK 1320
VH+LL +DP+F K+V TDSL ++ F VTPN HRVTEF+++F+NGQRL+FD RT AY+
Sbjct: 179 VHHLLKDVDPNFXAKFVPITDSLSMDSFLVTPNCHRVTEFMHAFANGQRLMFDHRTTAYR 238
Query: 1319 KLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGLRWIKDVI 1140
KLVDF+G AN+LGSRVL+CLKISKL+ P DL+ Q K+++D PSK+ GLRWIKDV
Sbjct: 239 KLVDFKGVANELGSRVLECLKISKLN-SEKPGNDLIAAQLKNVKDDPSKSSGLRWIKDVF 297
Query: 1139 LGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWNLRLIEKG 960
LGKR+DHCFR VVVGDPNIKL+EIGIP +IAERMH++E LNRWNL++ NL L+ K
Sbjct: 298 LGKRTDHCFRTVVVGDPNIKLSEIGIPSNIAERMHIAENLNRWNLERLGATCNLLLMFKQ 357
Query: 959 EIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSVKVLPITS 780
++VRR +V V TDEL +GD IYRPLSDGDI+LINRPPSIHQHSLIAL VK+LP
Sbjct: 358 VMHVRRKGSIVLVHQTDELQMGDAIYRPLSDGDIVLINRPPSIHQHSLIALFVKILPAAP 417
Query: 779 VVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRNLLSFSQD 600
VVSINP+CCSPFR DFDGDCLHGYVPQSVD +VELRELVALD+QL N QSG NLLS SQD
Sbjct: 418 VVSINPLCCSPFRGDFDGDCLHGYVPQSVDAKVELRELVALDKQLINGQSGTNLLSLSQD 477
Query: 599 SLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLFSMLLPSG 420
SLTAAHLI+ED VLLN +MQQL+ FC ++ PAIIKAPSL+GP WTGKQ+FSMLLP G
Sbjct: 478 SLTAAHLILEDGVLLNRSQMQQLQRFCCNELPSPAIIKAPSLNGPAWTGKQVFSMLLPLG 537
Query: 419 FDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAAQEVLCEW 240
FDY A +GVC+RNGEL+S SEGSSWLRD+ GNL+QSLIK+C G VLDILHAAQEV CEW
Sbjct: 538 FDYDFAPDGVCVRNGELLS-SEGSSWLRDMSGNLYQSLIKHCQGPVLDILHAAQEVFCEW 596
Query: 239 LSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRLVNYFQEFLIENNTED 60
LSMRGL+VSL+DLYL +DS SR +M+EIF GL+EAEQ C F++L+ L+ E+
Sbjct: 597 LSMRGLTVSLSDLYLASDSCSRNNLMEEIFCGLREAEQACIFRQLLVDSSRELLMGCAEE 656
Query: 59 NQRNVSIQMEYLLYKRQTS 3
NQ V+ ++Y +++Q S
Sbjct: 657 NQSPVTSDVDYFCHEKQKS 675
>ref|XP_011650451.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3
[Cucumis sativus]
Length = 1361
Score = 747 bits (1928), Expect = 0.0
Identities = 372/566 (65%), Positives = 452/566 (79%), Gaps = 7/566 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKST-------DDFWDFIPKDAQQEESCMKPNK 1521
M+FK+S+ D+F +S I VEV + + +K++ D+WDFIPKD QQEES +PN+
Sbjct: 33 MRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNR 92
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
++L+HAQVHYLL IDP F+KK+V DSLFLN FPVTPNSHRVTE +SFSNGQRLIFD
Sbjct: 93 KILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFD 152
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGL 1161
ERTRAYKK+VDFRG AN+LGSRVLDCLKISKLS +KDLV QQK I+D+ + + GL
Sbjct: 153 ERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQNKDLVY-QQKKIKDTATSSSGL 211
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
RWIKDV+LGKRSDHCFRMVVVGDPNI+L+EIGIPCH+AER+ +SE L+ WN+ K
Sbjct: 212 RWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCY 271
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
L L+EKGEIYVRR +LVRVR EL++GDTIYRPL+DGDI+L+NRPPSIHQHSLIALSV
Sbjct: 272 LHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLIALSV 331
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
K+LP+++V+S+NP+CCSPFR DFDGDCLHGYVPQS++ RVE+RELV+LD+QLTN QSGRN
Sbjct: 332 KLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQSGRN 391
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLS S DSLTAAHLI+ED V LNLF+MQQL+M LHQ + PAI+K+P L WTGKQLF
Sbjct: 392 LLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLF 451
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
S+LLP FDY S+ V I GEL+S SEGS WLRD NLFQ+LI++C G LD L A
Sbjct: 452 SILLPPDFDYSSPSHNVFIEKGELIS-SEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDA 510
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRLVNYFQEFL 81
Q VLCEWLS RGLSVSL+DLYL+ DS+S E MMD+IF GLQEAE+TC K+L+ + +
Sbjct: 511 QGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNLKQLMVDSHKEI 570
Query: 80 IENNTEDNQRNVSIQMEYLLYKRQTS 3
+ N EDNQ +SI +E L+Y++Q S
Sbjct: 571 LIGNDEDNQHLLSIAVERLIYEKQKS 596
>ref|XP_011650450.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2
[Cucumis sativus]
Length = 1362
Score = 747 bits (1928), Expect = 0.0
Identities = 372/566 (65%), Positives = 452/566 (79%), Gaps = 7/566 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKST-------DDFWDFIPKDAQQEESCMKPNK 1521
M+FK+S+ D+F +S I VEV + + +K++ D+WDFIPKD QQEES +PN+
Sbjct: 34 MRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNR 93
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
++L+HAQVHYLL IDP F+KK+V DSLFLN FPVTPNSHRVTE +SFSNGQRLIFD
Sbjct: 94 KILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFD 153
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGL 1161
ERTRAYKK+VDFRG AN+LGSRVLDCLKISKLS +KDLV QQK I+D+ + + GL
Sbjct: 154 ERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQNKDLVY-QQKKIKDTATSSSGL 212
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
RWIKDV+LGKRSDHCFRMVVVGDPNI+L+EIGIPCH+AER+ +SE L+ WN+ K
Sbjct: 213 RWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCY 272
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
L L+EKGEIYVRR +LVRVR EL++GDTIYRPL+DGDI+L+NRPPSIHQHSLIALSV
Sbjct: 273 LHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLIALSV 332
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
K+LP+++V+S+NP+CCSPFR DFDGDCLHGYVPQS++ RVE+RELV+LD+QLTN QSGRN
Sbjct: 333 KLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQSGRN 392
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLS S DSLTAAHLI+ED V LNLF+MQQL+M LHQ + PAI+K+P L WTGKQLF
Sbjct: 393 LLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLF 452
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
S+LLP FDY S+ V I GEL+S SEGS WLRD NLFQ+LI++C G LD L A
Sbjct: 453 SILLPPDFDYSSPSHNVFIEKGELIS-SEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDA 511
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRLVNYFQEFL 81
Q VLCEWLS RGLSVSL+DLYL+ DS+S E MMD+IF GLQEAE+TC K+L+ + +
Sbjct: 512 QGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNLKQLMVDSHKEI 571
Query: 80 IENNTEDNQRNVSIQMEYLLYKRQTS 3
+ N EDNQ +SI +E L+Y++Q S
Sbjct: 572 LIGNDEDNQHLLSIAVERLIYEKQKS 597
>ref|XP_011650447.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1
[Cucumis sativus] gi|778675671|ref|XP_011650448.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1
isoform X1 [Cucumis sativus]
gi|778675673|ref|XP_011650449.1| PREDICTED: DNA-directed
RNA polymerase IV subunit 1 isoform X1 [Cucumis sativus]
gi|700200830|gb|KGN55963.1| hypothetical protein
Csa_3G039340 [Cucumis sativus]
Length = 1483
Score = 747 bits (1928), Expect = 0.0
Identities = 372/566 (65%), Positives = 452/566 (79%), Gaps = 7/566 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKST-------DDFWDFIPKDAQQEESCMKPNK 1521
M+FK+S+ D+F +S I VEV + + +K++ D+WDFIPKD QQEES +PN+
Sbjct: 155 MRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNR 214
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
++L+HAQVHYLL IDP F+KK+V DSLFLN FPVTPNSHRVTE +SFSNGQRLIFD
Sbjct: 215 KILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFD 274
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGL 1161
ERTRAYKK+VDFRG AN+LGSRVLDCLKISKLS +KDLV QQK I+D+ + + GL
Sbjct: 275 ERTRAYKKVVDFRGTANELGSRVLDCLKISKLSPEKLQNKDLVY-QQKKIKDTATSSSGL 333
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
RWIKDV+LGKRSDHCFRMVVVGDPNI+L+EIGIPCH+AER+ +SE L+ WN+ K
Sbjct: 334 RWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLSTSCY 393
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
L L+EKGEIYVRR +LVRVR EL++GDTIYRPL+DGDI+L+NRPPSIHQHSLIALSV
Sbjct: 394 LHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDIVLVNRPPSIHQHSLIALSV 453
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
K+LP+++V+S+NP+CCSPFR DFDGDCLHGYVPQS++ RVE+RELV+LD+QLTN QSGRN
Sbjct: 454 KLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDKQLTNGQSGRN 513
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLS S DSLTAAHLI+ED V LNLF+MQQL+M LHQ + PAI+K+P L WTGKQLF
Sbjct: 514 LLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGKQLF 573
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
S+LLP FDY S+ V I GEL+S SEGS WLRD NLFQ+LI++C G LD L A
Sbjct: 574 SILLPPDFDYSSPSHNVFIEKGELIS-SEGSYWLRDSGRNLFQALIEHCEGKTLDYLRDA 632
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRLVNYFQEFL 81
Q VLCEWLS RGLSVSL+DLYL+ DS+S E MMD+IF GLQEAE+TC K+L+ + +
Sbjct: 633 QGVLCEWLSTRGLSVSLSDLYLSVDSYSHENMMDDIFCGLQEAEETCNLKQLMVDSHKEI 692
Query: 80 IENNTEDNQRNVSIQMEYLLYKRQTS 3
+ N EDNQ +SI +E L+Y++Q S
Sbjct: 693 LIGNDEDNQHLLSIAVERLIYEKQKS 718
>ref|XP_012476049.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X3
[Gossypium raimondii]
Length = 1300
Score = 746 bits (1925), Expect = 0.0
Identities = 371/567 (65%), Positives = 453/567 (79%), Gaps = 8/567 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD------DFWDFIPKDAQQEESCMKPNKR 1518
M+FK++SK+LF +S I VEV++ L K + D+WDFIPKD QQEE +KP +R
Sbjct: 142 MRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDFIPKDQQQEEGFVKPGRR 201
Query: 1517 VLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFDE 1338
VLSHAQV +LL ++P+FIKK+++ DS+FLN FPVTPNSHRVTE +++ SN QRLIFDE
Sbjct: 202 VLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQRLIFDE 261
Query: 1337 RTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIG-PNPSKDLVIGQQKSIRDSPSKTCGL 1161
RTR YKKLVDFRG AN+L S VL+CLKISKL + P+ +I K +DS S GL
Sbjct: 262 RTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSALIAALKKNKDSASNMSGL 321
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
R++KDVILGKR+DHCFRMV+ G+PN+KL+EIGIPCH+AE++ ++E+LNRWN ++ C N
Sbjct: 322 RYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQIAEQLNRWNEERLKTCCN 381
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
LR++EKGEI +RR KLVR+R +++ +GDTIYRPL+DGD +LINRPPSIHQHSLIALSV
Sbjct: 382 LRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSV 441
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
KVLP+ SVVSINP+ CSPFR DFDGDCLHGYVPQS++TRVEL ELV+LDRQL N QSGRN
Sbjct: 442 KVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQSGRN 501
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLS S DSLTAA+L+ ED VLLNLF+MQQLEMFC + LPAI+KAP L PVWTGKQLF
Sbjct: 502 LLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLPAIVKAPLLSNPVWTGKQLF 561
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
SML P FDYV A +GV I NG+L+ SEGSSWLRD DGNLFQSLIK+ G VLD LHAA
Sbjct: 562 SMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNLFQSLIKHYQGKVLDFLHAA 621
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRL-VNYFQEF 84
QEVLCEWLSMRGLSVSL DLYL+ D+ S++ MMDEIF+GLQEAEQTC FK+L V+ Q+F
Sbjct: 622 QEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQEAEQTCNFKQLMVDSCQDF 681
Query: 83 LIENNTEDNQRNVSIQMEYLLYKRQTS 3
L N+ E N R + + +E + Y++Q S
Sbjct: 682 LAGNDEETN-RFMVLDVEQMCYEKQRS 707
>ref|XP_012476048.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X2
[Gossypium raimondii]
Length = 1340
Score = 746 bits (1925), Expect = 0.0
Identities = 371/567 (65%), Positives = 453/567 (79%), Gaps = 8/567 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD------DFWDFIPKDAQQEESCMKPNKR 1518
M+FK++SK+LF +S I VEV++ L K + D+WDFIPKD QQEE +KP +R
Sbjct: 1 MRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDFIPKDQQQEEGFVKPGRR 60
Query: 1517 VLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFDE 1338
VLSHAQV +LL ++P+FIKK+++ DS+FLN FPVTPNSHRVTE +++ SN QRLIFDE
Sbjct: 61 VLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQRLIFDE 120
Query: 1337 RTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIG-PNPSKDLVIGQQKSIRDSPSKTCGL 1161
RTR YKKLVDFRG AN+L S VL+CLKISKL + P+ +I K +DS S GL
Sbjct: 121 RTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSALIAALKKNKDSASNMSGL 180
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
R++KDVILGKR+DHCFRMV+ G+PN+KL+EIGIPCH+AE++ ++E+LNRWN ++ C N
Sbjct: 181 RYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQIAEQLNRWNEERLKTCCN 240
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
LR++EKGEI +RR KLVR+R +++ +GDTIYRPL+DGD +LINRPPSIHQHSLIALSV
Sbjct: 241 LRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSV 300
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
KVLP+ SVVSINP+ CSPFR DFDGDCLHGYVPQS++TRVEL ELV+LDRQL N QSGRN
Sbjct: 301 KVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQSGRN 360
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLS S DSLTAA+L+ ED VLLNLF+MQQLEMFC + LPAI+KAP L PVWTGKQLF
Sbjct: 361 LLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLPAIVKAPLLSNPVWTGKQLF 420
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
SML P FDYV A +GV I NG+L+ SEGSSWLRD DGNLFQSLIK+ G VLD LHAA
Sbjct: 421 SMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNLFQSLIKHYQGKVLDFLHAA 480
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRL-VNYFQEF 84
QEVLCEWLSMRGLSVSL DLYL+ D+ S++ MMDEIF+GLQEAEQTC FK+L V+ Q+F
Sbjct: 481 QEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQEAEQTCNFKQLMVDSCQDF 540
Query: 83 LIENNTEDNQRNVSIQMEYLLYKRQTS 3
L N+ E N R + + +E + Y++Q S
Sbjct: 541 LAGNDEETN-RFMVLDVEQMCYEKQRS 566
>gb|KJB25756.1| hypothetical protein B456_004G207300 [Gossypium raimondii]
Length = 1478
Score = 746 bits (1925), Expect = 0.0
Identities = 371/567 (65%), Positives = 453/567 (79%), Gaps = 8/567 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD------DFWDFIPKDAQQEESCMKPNKR 1518
M+FK++SK+LF +S I VEV++ L K + D+WDFIPKD QQEE +KP +R
Sbjct: 139 MRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDFIPKDQQQEEGFVKPGRR 198
Query: 1517 VLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFDE 1338
VLSHAQV +LL ++P+FIKK+++ DS+FLN FPVTPNSHRVTE +++ SN QRLIFDE
Sbjct: 199 VLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQRLIFDE 258
Query: 1337 RTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIG-PNPSKDLVIGQQKSIRDSPSKTCGL 1161
RTR YKKLVDFRG AN+L S VL+CLKISKL + P+ +I K +DS S GL
Sbjct: 259 RTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSALIAALKKNKDSASNMSGL 318
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
R++KDVILGKR+DHCFRMV+ G+PN+KL+EIGIPCH+AE++ ++E+LNRWN ++ C N
Sbjct: 319 RYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQIAEQLNRWNEERLKTCCN 378
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
LR++EKGEI +RR KLVR+R +++ +GDTIYRPL+DGD +LINRPPSIHQHSLIALSV
Sbjct: 379 LRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSV 438
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
KVLP+ SVVSINP+ CSPFR DFDGDCLHGYVPQS++TRVEL ELV+LDRQL N QSGRN
Sbjct: 439 KVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQSGRN 498
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLS S DSLTAA+L+ ED VLLNLF+MQQLEMFC + LPAI+KAP L PVWTGKQLF
Sbjct: 499 LLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLPAIVKAPLLSNPVWTGKQLF 558
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
SML P FDYV A +GV I NG+L+ SEGSSWLRD DGNLFQSLIK+ G VLD LHAA
Sbjct: 559 SMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNLFQSLIKHYQGKVLDFLHAA 618
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRL-VNYFQEF 84
QEVLCEWLSMRGLSVSL DLYL+ D+ S++ MMDEIF+GLQEAEQTC FK+L V+ Q+F
Sbjct: 619 QEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQEAEQTCNFKQLMVDSCQDF 678
Query: 83 LIENNTEDNQRNVSIQMEYLLYKRQTS 3
L N+ E N R + + +E + Y++Q S
Sbjct: 679 LAGNDEETN-RFMVLDVEQMCYEKQRS 704
>ref|XP_012476045.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like isoform X1
[Gossypium raimondii] gi|823152441|ref|XP_012476046.1|
PREDICTED: DNA-directed RNA polymerase IV subunit 1-like
isoform X1 [Gossypium raimondii]
gi|763758424|gb|KJB25755.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
gi|763758426|gb|KJB25757.1| hypothetical protein
B456_004G207300 [Gossypium raimondii]
Length = 1481
Score = 746 bits (1925), Expect = 0.0
Identities = 371/567 (65%), Positives = 453/567 (79%), Gaps = 8/567 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD------DFWDFIPKDAQQEESCMKPNKR 1518
M+FK++SK+LF +S I VEV++ L K + D+WDFIPKD QQEE +KP +R
Sbjct: 142 MRFKITSKELFRKSAIMVEVSENSLMKVRKRGRQALPADYWDFIPKDQQQEEGFVKPGRR 201
Query: 1517 VLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFDE 1338
VLSHAQV +LL ++P+FIKK+++ DS+FLN FPVTPNSHRVTE +++ SN QRLIFDE
Sbjct: 202 VLSHAQVRHLLKDVNPEFIKKFISEADSIFLNFFPVTPNSHRVTEIMHTSSNAQRLIFDE 261
Query: 1337 RTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIG-PNPSKDLVIGQQKSIRDSPSKTCGL 1161
RTR YKKLVDFRG AN+L S VL+CLKISKL + P+ +I K +DS S GL
Sbjct: 262 RTRVYKKLVDFRGLANELSSHVLECLKISKLHVEKPSTEDSALIAALKKNKDSASNMSGL 321
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
R++KDVILGKR+DHCFRMV+ G+PN+KL+EIGIPCH+AE++ ++E+LNRWN ++ C N
Sbjct: 322 RYMKDVILGKRNDHCFRMVLTGNPNLKLSEIGIPCHVAEKLQIAEQLNRWNEERLKTCCN 381
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
LR++EKGEI +RR KLVR+R +++ +GDTIYRPL+DGD +LINRPPSIHQHSLIALSV
Sbjct: 382 LRILEKGEIRIRREGKLVRIRHNEKVQVGDTIYRPLNDGDTVLINRPPSIHQHSLIALSV 441
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
KVLP+ SVVSINP+ CSPFR DFDGDCLHGYVPQS++TRVEL ELV+LDRQL N QSGRN
Sbjct: 442 KVLPVNSVVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLDRQLINGQSGRN 501
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLS S DSLTAA+L+ ED VLLNLF+MQQLEMFC + LPAI+KAP L PVWTGKQLF
Sbjct: 502 LLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPLPAIVKAPLLSNPVWTGKQLF 561
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
SML P FDYV A +GV I NG+L+ SEGSSWLRD DGNLFQSLIK+ G VLD LHAA
Sbjct: 562 SMLFPPEFDYVFAPSGVVIHNGDLICSSEGSSWLRDADGNLFQSLIKHYQGKVLDFLHAA 621
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRL-VNYFQEF 84
QEVLCEWLSMRGLSVSL DLYL+ D+ S++ MMDEIF+GLQEAEQTC FK+L V+ Q+F
Sbjct: 622 QEVLCEWLSMRGLSVSLLDLYLSPDTDSQKNMMDEIFYGLQEAEQTCNFKQLMVDSCQDF 681
Query: 83 LIENNTEDNQRNVSIQMEYLLYKRQTS 3
L N+ E N R + + +E + Y++Q S
Sbjct: 682 LAGNDEETN-RFMVLDVEQMCYEKQRS 707
>ref|XP_010661376.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X3 [Vitis
vinifera]
Length = 1354
Score = 740 bits (1911), Expect = 0.0
Identities = 378/568 (66%), Positives = 449/568 (79%), Gaps = 9/568 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD-------DFWDFIPKDAQQEESCMKPNK 1521
MKFKVSSKDLF ++ I VE+N+KL +K + D+WDFIPKD QQEE+C+ PN+
Sbjct: 33 MKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNR 92
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
RVLSHAQVHYLL IDP FIK++V+R DS FLNC PVTPN+HRVTE ++ SNGQ LIFD
Sbjct: 93 RVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFD 152
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGL 1161
+ +RAYKKLVDFRG AN+L RVLDCLK SKL + SKD S SK GL
Sbjct: 153 QHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSKD-----------SASKMSGL 201
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDK-SDGCW 984
+WIK+V+LGKR++H FRM+VVGDP ++L+EIGIPCHIAE + +SE LN WN +K ++GC
Sbjct: 202 KWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGC- 260
Query: 983 NLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALS 804
NLRL+EKG+ YVRR L VR ++ GD IYRPL+DGDI+LINRPPSIHQHS+IALS
Sbjct: 261 NLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALS 320
Query: 803 VKVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGR 624
VKVLP+ SVVSINP+CCSPFR DFDGDCLHGY+PQSVD+RVEL ELVAL+RQL NRQSGR
Sbjct: 321 VKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGR 380
Query: 623 NLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQL 444
NLLS SQDSL+AAHL+MED VLLNLF+MQQLEMFC +Q PAIIKAP LD VWTGKQL
Sbjct: 381 NLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQL 440
Query: 443 FSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHA 264
FSMLLP GF+YV NGV I +GEL+S S+GS+WLRDIDGNLF SL+K C G LD L+A
Sbjct: 441 FSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYA 500
Query: 263 AQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKR-LVNYFQE 87
AQEVLCEWLSMRGLSVSL+D+YL++DS SR+ M+DE+F GL AEQTC FK+ LV+ Q
Sbjct: 501 AQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQN 560
Query: 86 FLIENNTEDNQRNVSIQMEYLLYKRQTS 3
FLI + E+NQ V ++ L Y+RQ S
Sbjct: 561 FLI-GSGENNQNGVVPDVQSLWYERQGS 587
>ref|XP_010661369.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X2 [Vitis
vinifera]
Length = 1458
Score = 740 bits (1911), Expect = 0.0
Identities = 378/568 (66%), Positives = 449/568 (79%), Gaps = 9/568 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD-------DFWDFIPKDAQQEESCMKPNK 1521
MKFKVSSKDLF ++ I VE+N+KL +K + D+WDFIPKD QQEE+C+ PN+
Sbjct: 139 MKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNR 198
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
RVLSHAQVHYLL IDP FIK++V+R DS FLNC PVTPN+HRVTE ++ SNGQ LIFD
Sbjct: 199 RVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFD 258
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGL 1161
+ +RAYKKLVDFRG AN+L RVLDCLK SKL + SKD S SK GL
Sbjct: 259 QHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSKD-----------SASKMSGL 307
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDK-SDGCW 984
+WIK+V+LGKR++H FRM+VVGDP ++L+EIGIPCHIAE + +SE LN WN +K ++GC
Sbjct: 308 KWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGC- 366
Query: 983 NLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALS 804
NLRL+EKG+ YVRR L VR ++ GD IYRPL+DGDI+LINRPPSIHQHS+IALS
Sbjct: 367 NLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALS 426
Query: 803 VKVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGR 624
VKVLP+ SVVSINP+CCSPFR DFDGDCLHGY+PQSVD+RVEL ELVAL+RQL NRQSGR
Sbjct: 427 VKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGR 486
Query: 623 NLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQL 444
NLLS SQDSL+AAHL+MED VLLNLF+MQQLEMFC +Q PAIIKAP LD VWTGKQL
Sbjct: 487 NLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQL 546
Query: 443 FSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHA 264
FSMLLP GF+YV NGV I +GEL+S S+GS+WLRDIDGNLF SL+K C G LD L+A
Sbjct: 547 FSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYA 606
Query: 263 AQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKR-LVNYFQE 87
AQEVLCEWLSMRGLSVSL+D+YL++DS SR+ M+DE+F GL AEQTC FK+ LV+ Q
Sbjct: 607 AQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQN 666
Query: 86 FLIENNTEDNQRNVSIQMEYLLYKRQTS 3
FLI + E+NQ V ++ L Y+RQ S
Sbjct: 667 FLI-GSGENNQNGVVPDVQSLWYERQGS 693
>ref|XP_010661365.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 isoform X1 [Vitis
vinifera]
Length = 1460
Score = 740 bits (1911), Expect = 0.0
Identities = 378/568 (66%), Positives = 449/568 (79%), Gaps = 9/568 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD-------DFWDFIPKDAQQEESCMKPNK 1521
MKFKVSSKDLF ++ I VE+N+KL +K + D+WDFIPKD QQEE+C+ PN+
Sbjct: 139 MKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNR 198
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
RVLSHAQVHYLL IDP FIK++V+R DS FLNC PVTPN+HRVTE ++ SNGQ LIFD
Sbjct: 199 RVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFD 258
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGL 1161
+ +RAYKKLVDFRG AN+L RVLDCLK SKL + SKD S SK GL
Sbjct: 259 QHSRAYKKLVDFRGTANELSCRVLDCLKTSKLRSEKSTSKD-----------SASKMSGL 307
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDK-SDGCW 984
+WIK+V+LGKR++H FRM+VVGDP ++L+EIGIPCHIAE + +SE LN WN +K ++GC
Sbjct: 308 KWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGC- 366
Query: 983 NLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALS 804
NLRL+EKG+ YVRR L VR ++ GD IYRPL+DGDI+LINRPPSIHQHS+IALS
Sbjct: 367 NLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALS 426
Query: 803 VKVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGR 624
VKVLP+ SVVSINP+CCSPFR DFDGDCLHGY+PQSVD+RVEL ELVAL+RQL NRQSGR
Sbjct: 427 VKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGR 486
Query: 623 NLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQL 444
NLLS SQDSL+AAHL+MED VLLNLF+MQQLEMFC +Q PAIIKAP LD VWTGKQL
Sbjct: 487 NLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQL 546
Query: 443 FSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHA 264
FSMLLP GF+YV NGV I +GEL+S S+GS+WLRDIDGNLF SL+K C G LD L+A
Sbjct: 547 FSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYA 606
Query: 263 AQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKR-LVNYFQE 87
AQEVLCEWLSMRGLSVSL+D+YL++DS SR+ M+DE+F GL AEQTC FK+ LV+ Q
Sbjct: 607 AQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQN 666
Query: 86 FLIENNTEDNQRNVSIQMEYLLYKRQTS 3
FLI + E+NQ V ++ L Y+RQ S
Sbjct: 667 FLI-GSGENNQNGVVPDVQSLWYERQGS 693
>emb|CAN66198.1| hypothetical protein VITISV_011232 [Vitis vinifera]
Length = 1393
Score = 739 bits (1909), Expect = 0.0
Identities = 376/568 (66%), Positives = 451/568 (79%), Gaps = 9/568 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD-------DFWDFIPKDAQQEESCMKPNK 1521
MKFKVSSKDLF ++ I VE+N+KL +K + D+WDFIPKD QQEE+C+ PN+
Sbjct: 139 MKFKVSSKDLFRKTAIIVEMNEKLPKKLQKKSFRPVLPLDYWDFIPKDPQQEENCLNPNR 198
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
RVLSHAQVHYLL IDP FIK++V+R DS FLNC PVTPN+HRVTE ++ SNGQ LIFD
Sbjct: 199 RVLSHAQVHYLLKDIDPGFIKEFVSRMDSFFLNCLPVTPNNHRVTEITHALSNGQTLIFD 258
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGL 1161
+ +RAYKKLVDFRG AN+L RVLDCLK SK S + ++ + +DS SK GL
Sbjct: 259 QHSRAYKKLVDFRGTANELSCRVLDCLKTSKASN--------LRSEKSTSKDSASKMSGL 310
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDK-SDGCW 984
+WIK+V+LGKR++H FRM+VVGDP ++L+EIGIPCHIAE + +SE LN WN +K ++GC
Sbjct: 311 KWIKEVLLGKRTNHSFRMIVVGDPKLRLSEIGIPCHIAEELLISEHLNSWNWEKVTNGC- 369
Query: 983 NLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALS 804
NLRL+EKG+ YVRR L VR ++ GD IYRPL+DGDI+LINRPPSIHQHS+IALS
Sbjct: 370 NLRLLEKGQTYVRRKGTLAPVRRMNDFQAGDIIYRPLTDGDIVLINRPPSIHQHSVIALS 429
Query: 803 VKVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGR 624
VKVLP+ SVVSINP+CCSPFR DFDGDCLHGY+PQSVD+RVEL ELVAL+RQL NRQSGR
Sbjct: 430 VKVLPLNSVVSINPLCCSPFRGDFDGDCLHGYIPQSVDSRVELSELVALNRQLINRQSGR 489
Query: 623 NLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQL 444
NLLS SQDSL+AAHL+MED VLLNLF+MQQLEMFC +Q PAIIKAP LD VWTGKQL
Sbjct: 490 NLLSLSQDSLSAAHLVMEDGVLLNLFQMQQLEMFCPYQLQSPAIIKAPLLDTQVWTGKQL 549
Query: 443 FSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHA 264
FSMLLP GF+YV NGV I +GEL+S S+GS+WLRDIDGNLF SL+K C G LD L+A
Sbjct: 550 FSMLLPPGFNYVFPLNGVRISDGELISSSDGSAWLRDIDGNLFSSLVKDCQGKALDFLYA 609
Query: 263 AQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKR-LVNYFQE 87
AQEVLCEWLSMRGLSVSL+D+YL++DS SR+ M+DE+F GL AEQTC FK+ LV+ Q
Sbjct: 610 AQEVLCEWLSMRGLSVSLSDIYLSSDSISRKNMIDEVFCGLLVAEQTCHFKQLLVDSSQN 669
Query: 86 FLIENNTEDNQRNVSIQMEYLLYKRQTS 3
FLI + E+NQ V ++ L Y+RQ S
Sbjct: 670 FLI-GSGENNQNGVVPDVQSLWYERQGS 696
>ref|XP_008448971.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase IV
subunit 1 [Cucumis melo]
Length = 1489
Score = 732 bits (1890), Expect = 0.0
Identities = 365/569 (64%), Positives = 447/569 (78%), Gaps = 10/569 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKST-------DDFWDFIPKDAQQEESCMKPNK 1521
M+FK+S+ D+F +S I VEV + + +K++ D+WDFIPKD QQEES +PN+
Sbjct: 155 MRFKLSTTDMFKKSMIMVEVKENMSKKYQKRVAKGGLPSDYWDFIPKDEQQEESYCRPNR 214
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
++L+HAQVHYLL IDP F+KK+V DSLFLN FPVTPNSHRVTE +SFSNGQRLIFD
Sbjct: 215 KILTHAQVHYLLKDIDPKFLKKFVPAIDSLFLNSFPVTPNSHRVTEMAHSFSNGQRLIFD 274
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKL--SIGPNPSKDLVIG-QQKSIRDSPSKT 1170
ERTRAYKK+VDFRG AN+LGSRVLDCLKISK I P G K I+D+ + +
Sbjct: 275 ERTRAYKKVVDFRGTANELGSRVLDCLKISKAIYKIFPREVTKXRFGLPAKKIKDTATSS 334
Query: 1169 CGLRWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDG 990
GLRWIKDV+LGKRSDHCFRMVVVGDPNI+L+EIGIPCH+AER+ +SE L+ WN+ K
Sbjct: 335 SGLRWIKDVVLGKRSDHCFRMVVVGDPNIELSEIGIPCHVAERLQISEHLSSWNMKKLST 394
Query: 989 CWNLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIA 810
L L+EKGEIYVRR +LVRVR EL++GDTIYRPL+DGD++L+NRPPSIHQHSLIA
Sbjct: 395 SCYLHLVEKGEIYVRREGRLVRVRNVLELNMGDTIYRPLADGDVVLVNRPPSIHQHSLIA 454
Query: 809 LSVKVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQS 630
LSVK+LP+++V+S+NP+CCSPFR DFDGDCLHGYVPQS++ RVE+RELV+LDRQL N QS
Sbjct: 455 LSVKLLPVSAVLSLNPLCCSPFRGDFDGDCLHGYVPQSLEARVEVRELVSLDRQLINGQS 514
Query: 629 GRNLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGK 450
GRNLLS S DSLTAAHLI+ED V LNLF+MQQL+M LHQ + PAI+K+P L WTGK
Sbjct: 515 GRNLLSLSHDSLTAAHLILEDGVSLNLFQMQQLQMLTLHQLLPPAIVKSPLLRNCAWTGK 574
Query: 449 QLFSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDIL 270
QLFS+LLP F+Y S+ V I GEL+S SEGS WLRD NLFQ+LI++C G LD L
Sbjct: 575 QLFSILLPPDFEYSSPSHNVFIEKGELIS-SEGSYWLRDSGRNLFQALIEHCEGKTLDYL 633
Query: 269 HAAQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRLVNYFQ 90
AQ VLCEWLSMRGLSVSL+DLYL+ DS+S + MMD+IF GLQEAE+TC K+L+
Sbjct: 634 RDAQGVLCEWLSMRGLSVSLSDLYLSVDSYSHKNMMDDIFCGLQEAEETCNLKQLMVDSH 693
Query: 89 EFLIENNTEDNQRNVSIQMEYLLYKRQTS 3
+ ++ N EDNQ +SI +E+L+Y++Q S
Sbjct: 694 KEILTGNDEDNQHLLSIAVEHLIYEKQKS 722
>ref|XP_007040111.1| DNA-directed RNA polymerase II subunit RPB1-B, putative [Theobroma
cacao] gi|508777356|gb|EOY24612.1| DNA-directed RNA
polymerase II subunit RPB1-B, putative [Theobroma cacao]
Length = 1484
Score = 731 bits (1887), Expect = 0.0
Identities = 365/567 (64%), Positives = 451/567 (79%), Gaps = 8/567 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKST------DDFWDFIPKDAQQEESCMKPNKR 1518
M FK+SSKDLF +S I VEV++K K + D+WDFIPKD QQEES ++PN+R
Sbjct: 142 MNFKISSKDLFRKSAIIVEVSEKSSMKVRKRGKQALPSDYWDFIPKDEQQEESLIRPNRR 201
Query: 1517 VLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFDE 1338
VLSH+QV YLL +DP+FIKK+V DS+FLNCFPVTPNSHRVTE +++ SNGQRLIFD+
Sbjct: 202 VLSHSQVRYLLKDVDPEFIKKFVLSMDSIFLNCFPVTPNSHRVTEIMHASSNGQRLIFDQ 261
Query: 1337 RTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIG-PNPSKDLVIGQQKSIRDSPSKTCGL 1161
RTR YKKL DFRG AN+L S VL+CLKISKL + P+ + ++ QK +DS S GL
Sbjct: 262 RTRVYKKLADFRGIANELSSHVLECLKISKLHLEKPSNEESALVLAQKRNKDSASNMSGL 321
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
R++KDVILGKR+DHCFRMV+ G+PN+KL+EI IPCH+AER+ ++E+LN WN ++ C +
Sbjct: 322 RYMKDVILGKRNDHCFRMVLTGNPNLKLSEISIPCHVAERLQIAEQLNNWNEERLKACCD 381
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
LRL+EKGEI+VRR +LVR+R ++L +GDTI+RPL++GDI+LINRPPSIHQHSLIALSV
Sbjct: 382 LRLLEKGEIHVRREGRLVRIRHNEKLQVGDTIFRPLNNGDIILINRPPSIHQHSLIALSV 441
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
KVLP++SVVSINP+ CSPFR DFDGDCLHGYVPQS+ RVEL ELV+L+RQL N QSGRN
Sbjct: 442 KVLPVSSVVSINPLICSPFRGDFDGDCLHGYVPQSIKARVELIELVSLNRQLINGQSGRN 501
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLS S DSLTAA+L+ ED VLLNLF+MQQLEMFC + PAI+KAP L VWTGKQL
Sbjct: 502 LLSLSHDSLTAAYLVKEDGVLLNLFQMQQLEMFCPNHSPFPAIVKAPLLRSSVWTGKQLL 561
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
SML P FDY N V IRNGEL+S SEGS+WLRD DGNLFQSLIK+ G VLD L+AA
Sbjct: 562 SMLFPLEFDYDFTPNDVVIRNGELISSSEGSTWLRDADGNLFQSLIKHYQGKVLDFLYAA 621
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRL-VNYFQEF 84
QEVLCEWLSMRGLSVSL+DLYL++DS+S++ MMDEIF GLQE EQTC FK+L V+ +F
Sbjct: 622 QEVLCEWLSMRGLSVSLSDLYLSSDSNSQKNMMDEIFCGLQEIEQTCNFKQLMVDSNHDF 681
Query: 83 LIENNTEDNQRNVSIQMEYLLYKRQTS 3
L+ + E+ +++ +E + Y++Q S
Sbjct: 682 LV-GHDEEVDSFMALDVEQMCYEKQRS 707
>ref|XP_002509696.1| DNA-directed RNA polymerase, putative [Ricinus communis]
gi|223549595|gb|EEF51083.1| DNA-directed RNA polymerase,
putative [Ricinus communis]
Length = 1475
Score = 716 bits (1848), Expect = 0.0
Identities = 363/567 (64%), Positives = 444/567 (78%), Gaps = 8/567 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKF-------KSTDDFWDFIPKDAQQEESCMKPNK 1521
MKF VSS+++F ++ I + +++ K K D+WD IPKD QQEE+ +PN+
Sbjct: 134 MKFSVSSEEIFRKNVIIAKFSERPTNKSQKRGFKKKLAADYWDIIPKDEQQEENITRPNQ 193
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
RVLSHAQV +LL IDP+FI+K+V + DS+FLNCF VTPN HRVTE ++FSNGQRL+FD
Sbjct: 194 RVLSHAQVIHLLENIDPNFIRKFVLKRDSIFLNCFSVTPNCHRVTEVTHAFSNGQRLVFD 253
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGL 1161
+RTRAYKK+VDFRG A +L RVLDCLK SK++ + + D + Q+ + DS S + GL
Sbjct: 254 DRTRAYKKMVDFRGIAKELSFRVLDCLKTSKINPDKSVNNDDYMALQRKMNDSSSSSSGL 313
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
RWIKDV+LGKR+D+ FRMVVVGDPNIK +EIGIPC IAER+ +SE L WN DK + C
Sbjct: 314 RWIKDVVLGKRNDNSFRMVVVGDPNIKFSEIGIPCPIAERLQISEHLTTWNWDKLNTCCE 373
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
+RL+EKG+++VRR KLVRVR T EL IGD IYRPL+DGD +LINRPPSIHQHSLIALSV
Sbjct: 374 VRLLEKGDMHVRREGKLVRVRRTKELRIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSV 433
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
KVLP TSV++INP+ C+PFR DFDGDCLHGYVPQSVDTRVELRELVALD+QL N Q+GRN
Sbjct: 434 KVLPATSVLAINPLICAPFRGDFDGDCLHGYVPQSVDTRVELRELVALDKQLINVQNGRN 493
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLSFSQDSL AAHL+MED VLL+L +MQQL+MFC HQ PA+ KAPSL+G WTGKQL
Sbjct: 494 LLSFSQDSLVAAHLVMEDGVLLSLQQMQQLQMFCPHQLFSPAVRKAPSLNGCAWTGKQLI 553
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
SMLLP GFD+ S+ V IR+GEL+S SEGS WLRD DGNLFQSLIK C VLD L+ A
Sbjct: 554 SMLLPRGFDHECPSSDVYIRDGELIS-SEGSFWLRDTDGNLFQSLIKQCQDQVLDFLYIA 612
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKR-LVNYFQEF 84
QEVLCEWLSMRGLSVSL+DLYL DS SRE MMDE+ FGLQ+A+ TC K+ +V+ ++F
Sbjct: 613 QEVLCEWLSMRGLSVSLSDLYLCPDSDSRENMMDEVLFGLQDAKGTCNMKQFMVDSCRDF 672
Query: 83 LIENNTEDNQRNVSIQMEYLLYKRQTS 3
L + ED Q +V+ +E+L +++Q S
Sbjct: 673 LASID-EDEQYSVNFDVEHLCHEKQRS 698
>ref|XP_012087018.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1 [Jatropha curcas]
Length = 1453
Score = 713 bits (1841), Expect = 0.0
Identities = 357/567 (62%), Positives = 442/567 (77%), Gaps = 8/567 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVND-------KLLEKFKSTDDFWDFIPKDAQQEESCMKPNK 1521
MKF VSS+++F ++ I ++++ K K + D+WD IPKD QQEE+ ++PN+
Sbjct: 137 MKFSVSSEEIFRKNVIIAKISERPPQNSHKRGRKKRLAADYWDIIPKDEQQEENTLRPNQ 196
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
RVL+HAQV +LL +DP+FIKK+V +TDS+FLNCFPVTPN HRVTE ++FSNGQRL+FD
Sbjct: 197 RVLTHAQVRHLLKDVDPNFIKKFVLKTDSIFLNCFPVTPNCHRVTEVTHAFSNGQRLVFD 256
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGPNPSKDLVIGQQKSIRDSPSKTCGL 1161
ERTRAYKKLVDFRG A +L RVLDCLK SKL+ + + D + Q+ I DS S + GL
Sbjct: 257 ERTRAYKKLVDFRGTAKELSFRVLDCLKTSKLNPDNSVNNDDMYALQRKINDSASNSSGL 316
Query: 1160 RWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGCWN 981
RW+KDV+LGKR+D+ FRMVVVGDPNIKL+EIGIPCHIAER+ VSE L +WN ++ C
Sbjct: 317 RWVKDVVLGKRNDNSFRMVVVGDPNIKLSEIGIPCHIAERLQVSEHLTKWNRERLTTCCE 376
Query: 980 LRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIALSV 801
+RL+EKGE++VRR LVRVR T +L IGD IYRPL+DGD +LINRPPSIHQHSLIALSV
Sbjct: 377 VRLLEKGEMHVRREGNLVRVRRTKDLRIGDIIYRPLNDGDTVLINRPPSIHQHSLIALSV 436
Query: 800 KVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSGRN 621
KVLP + ++INP+CC PFR DFDGDCLHGYVPQSVDTR EL ELVALD+QLTN QSGRN
Sbjct: 437 KVLPAAAALAINPLCCPPFRGDFDGDCLHGYVPQSVDTRAELCELVALDKQLTNVQSGRN 496
Query: 620 LLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQLF 441
LLS +QDSL AAHL+MED V L+LFEMQQL+MFC Q + PAI+KAP + WTGKQL
Sbjct: 497 LLSLNQDSLVAAHLVMEDGVFLSLFEMQQLQMFCPRQLLSPAIVKAPLPNDCAWTGKQLV 556
Query: 440 SMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILHAA 261
SMLLP GFD+ SN V IR+GEL+S SEGS WLRD DGNLFQSLIK+C VLD L A
Sbjct: 557 SMLLPRGFDHDFPSNNVYIRDGELIS-SEGSFWLRDTDGNLFQSLIKHCQSQVLDFLCTA 615
Query: 260 QEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKR-LVNYFQEF 84
QEVLCEWLSMRGLSVSL+DLYL DS++ + MM E+ +GLQ+A+ TC K+ +V+ ++F
Sbjct: 616 QEVLCEWLSMRGLSVSLSDLYLCPDSYAWKNMMCEVSYGLQDADHTCNIKQFMVDSCRDF 675
Query: 83 LIENNTEDNQRNVSIQMEYLLYKRQTS 3
L N ED++ + + +E+L Y++Q S
Sbjct: 676 L-AGNGEDDEHPMGLDVEHLCYEKQRS 701
>ref|XP_012488706.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Gossypium
raimondii]
Length = 1485
Score = 704 bits (1816), Expect = 0.0
Identities = 355/569 (62%), Positives = 438/569 (76%), Gaps = 10/569 (1%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD------DFWDFIPKDAQQEES-CMKPNK 1521
M FK+SSK+L +STI VEV++ L + D+WDFIPKD Q+EE MKP +
Sbjct: 147 MTFKISSKELSKKSTIVVEVSEDSLMMVRKRGRQALPADYWDFIPKDQQEEEDGLMKPRR 206
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
RVLSHAQVHYLL +DP+FIKK++ DS+FLNCFPVTPNSHRVTE + SN QRLIFD
Sbjct: 207 RVLSHAQVHYLLKDVDPEFIKKFIQNVDSIFLNCFPVTPNSHRVTEITHRSSNSQRLIFD 266
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKL--SIGPNPSKDLVIGQQKSIRDSPSKTC 1167
ERTR YK+LVDFRG AN+L S VL+CLKISKL N +L++ ++ +D S
Sbjct: 267 ERTRLYKRLVDFRGVANELSSHVLECLKISKLFQEKPSNEDNELILALTRN-KDPVSNMS 325
Query: 1166 GLRWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSERLNRWNLDKSDGC 987
GLR++K+V+LGKR+DHCFRMV+ G+P++KL+EIGIPC +AER+ ++E+LN+WN ++ C
Sbjct: 326 GLRYMKNVLLGKRNDHCFRMVLTGNPSLKLSEIGIPCPVAERLQIAEQLNKWNEERLKAC 385
Query: 986 WNLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINRPPSIHQHSLIAL 807
NLR++EKGEI +RR LVR+ +++ +GD IYRPL++GDI+LINRPPSIHQHS IAL
Sbjct: 386 CNLRILEKGEICIRREGTLVRIHHNEKIRLGDIIYRPLNNGDIVLINRPPSIHQHSFIAL 445
Query: 806 SVKVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELVALDRQLTNRQSG 627
SVKVLP++S VSINP+ CSPFR DFDGDCLHGYVPQS++TRVEL ELV+L+RQL N QSG
Sbjct: 446 SVKVLPVSSSVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELVSLNRQLINGQSG 505
Query: 626 RNLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKAPSLDGPVWTGKQ 447
RNLLS S DSL+AA+L+ D VLLNL+EMQQLEMFC ++ PAIIKAP L PVWTGKQ
Sbjct: 506 RNLLSLSHDSLSAAYLVNGDGVLLNLYEMQQLEMFCPNRSPSPAIIKAPLLSNPVWTGKQ 565
Query: 446 LFSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLIKYCHGHVLDILH 267
LFSML P DY + + + IRNGEL++ SEGSSW RD DGNLF+SLIK C G VLD LH
Sbjct: 566 LFSMLFPPELDYGFSPSDLVIRNGELITSSEGSSWFRDADGNLFESLIKNCRGKVLDFLH 625
Query: 266 AAQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQTCAFKRL-VNYFQ 90
AQEVLCEWLSMRG+SVSL DLYLT DS+SR+ MMDEIF+GLQE E TC FK+L V+ F
Sbjct: 626 GAQEVLCEWLSMRGMSVSLLDLYLTPDSNSRKNMMDEIFYGLQETELTCNFKQLMVDSFC 685
Query: 89 EFLIENNTEDNQRNVSIQMEYLLYKRQTS 3
+FL NN E+ V E + Y++Q S
Sbjct: 686 DFLAGNN-EEIDGFVGFDFERMCYEKQRS 713
>gb|KJB39621.1| hypothetical protein B456_007G022200 [Gossypium raimondii]
Length = 1397
Score = 700 bits (1807), Expect = 0.0
Identities = 355/581 (61%), Positives = 438/581 (75%), Gaps = 22/581 (3%)
Frame = -2
Query: 1679 MKFKVSSKDLFSRSTITVEVNDKLLEKFKSTD------DFWDFIPKDAQQEES-CMKPNK 1521
M FK+SSK+L +STI VEV++ L + D+WDFIPKD Q+EE MKP +
Sbjct: 47 MTFKISSKELSKKSTIVVEVSEDSLMMVRKRGRQALPADYWDFIPKDQQEEEDGLMKPRR 106
Query: 1520 RVLSHAQVHYLLNAIDPDFIKKYVARTDSLFLNCFPVTPNSHRVTEFINSFSNGQRLIFD 1341
RVLSHAQVHYLL +DP+FIKK++ DS+FLNCFPVTPNSHRVTE + SN QRLIFD
Sbjct: 107 RVLSHAQVHYLLKDVDPEFIKKFIQNVDSIFLNCFPVTPNSHRVTEITHRSSNSQRLIFD 166
Query: 1340 ERTRAYKKLVDFRGAANDLGSRVLDCLKISKLSIGP--------------NPSKDLVIGQ 1203
ERTR YK+LVDFRG AN+L S VL+CLKISK S N +L++
Sbjct: 167 ERTRLYKRLVDFRGVANELSSHVLECLKISKASYSALFSFLYLLFQEKPSNEDNELILAL 226
Query: 1202 QKSIRDSPSKTCGLRWIKDVILGKRSDHCFRMVVVGDPNIKLNEIGIPCHIAERMHVSER 1023
++ +D S GLR++K+V+LGKR+DHCFRMV+ G+P++KL+EIGIPC +AER+ ++E+
Sbjct: 227 TRN-KDPVSNMSGLRYMKNVLLGKRNDHCFRMVLTGNPSLKLSEIGIPCPVAERLQIAEQ 285
Query: 1022 LNRWNLDKSDGCWNLRLIEKGEIYVRRNNKLVRVRPTDELHIGDTIYRPLSDGDILLINR 843
LN+WN ++ C NLR++EKGEI +RR LVR+ +++ +GD IYRPL++GDI+LINR
Sbjct: 286 LNKWNEERLKACCNLRILEKGEICIRREGTLVRIHHNEKIRLGDIIYRPLNNGDIVLINR 345
Query: 842 PPSIHQHSLIALSVKVLPITSVVSINPICCSPFRSDFDGDCLHGYVPQSVDTRVELRELV 663
PPSIHQHS IALSVKVLP++S VSINP+ CSPFR DFDGDCLHGYVPQS++TRVEL ELV
Sbjct: 346 PPSIHQHSFIALSVKVLPVSSSVSINPLICSPFRGDFDGDCLHGYVPQSINTRVELSELV 405
Query: 662 ALDRQLTNRQSGRNLLSFSQDSLTAAHLIMEDSVLLNLFEMQQLEMFCLHQRMLPAIIKA 483
+L+RQL N QSGRNLLS S DSL+AA+L+ D VLLNL+EMQQLEMFC ++ PAIIKA
Sbjct: 406 SLNRQLINGQSGRNLLSLSHDSLSAAYLVNGDGVLLNLYEMQQLEMFCPNRSPSPAIIKA 465
Query: 482 PSLDGPVWTGKQLFSMLLPSGFDYVDASNGVCIRNGELVSFSEGSSWLRDIDGNLFQSLI 303
P L PVWTGKQLFSML P DY + + + IRNGEL++ SEGSSW RD DGNLF+SLI
Sbjct: 466 PLLSNPVWTGKQLFSMLFPPELDYGFSPSDLVIRNGELITSSEGSSWFRDADGNLFESLI 525
Query: 302 KYCHGHVLDILHAAQEVLCEWLSMRGLSVSLADLYLTADSHSREKMMDEIFFGLQEAEQT 123
K C G VLD LH AQEVLCEWLSMRG+SVSL DLYLT DS+SR+ MMDEIF+GLQE E T
Sbjct: 526 KNCRGKVLDFLHGAQEVLCEWLSMRGMSVSLLDLYLTPDSNSRKNMMDEIFYGLQETELT 585
Query: 122 CAFKRL-VNYFQEFLIENNTEDNQRNVSIQMEYLLYKRQTS 3
C FK+L V+ F +FL NN E+ V E + Y++Q S
Sbjct: 586 CNFKQLMVDSFCDFLAGNN-EEIDGFVGFDFERMCYEKQRS 625