BLASTX nr result
ID: Ziziphus21_contig00018752
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ziziphus21_contig00018752
(334 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|YP_008963385.1| RNA polymerase beta (chloroplast) [Sedum sar... 156 5e-36
ref|YP_009164491.1| RNA polymerase beta (chloroplast) [Sedum ory... 155 1e-35
prf||1211235Q rpoC-like ORF 548 154 2e-35
ref|YP_009175996.1| RNA polymerase beta (chloroplast) [Ficus rac... 153 4e-35
ref|XP_006360368.1| PREDICTED: DNA-directed RNA polymerase subun... 153 4e-35
gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedice... 152 1e-34
ref|YP_009115673.1| RNA polymerase beta [Lysimachia coreana] gi|... 146 7e-33
ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea ca... 145 9e-33
ref|YP_007890364.1| RNA polymerase beta' subunit (chloroplast) [... 145 1e-32
gb|AII17896.1| RNA polymerase beta subunit, partial (chloroplast... 144 2e-32
gb|AII17895.1| RNA polymerase beta subunit, partial (chloroplast... 144 2e-32
gb|AII17892.1| RNA polymerase beta subunit, partial (chloroplast... 144 2e-32
gb|AII17885.1| RNA polymerase beta subunit, partial (chloroplast... 144 2e-32
gb|AII17883.1| RNA polymerase beta subunit, partial (chloroplast... 144 2e-32
gb|AII17881.1| RNA polymerase beta subunit, partial (chloroplast... 144 2e-32
gb|AII17880.1| RNA polymerase beta subunit, partial (chloroplast... 144 2e-32
gb|AII17878.1| RNA polymerase beta subunit, partial (chloroplast... 144 2e-32
gb|AII17877.1| RNA polymerase beta subunit, partial (chloroplast... 144 2e-32
ref|YP_009048101.1| DNA-directed RNA polymerase beta' chain (chl... 144 3e-32
gb|AHE41649.1| RNA polymerase beta' subunit protein, partial (ch... 144 3e-32
>ref|YP_008963385.1| RNA polymerase beta (chloroplast) [Sedum sarmentosum]
gi|402797520|gb|AFQ99052.1| RNA polymerase beta
(chloroplast) [Sedum sarmentosum]
Length = 552
Score = 156 bits (395), Expect = 5e-36
Identities = 74/82 (90%), Positives = 78/82 (95%)
Frame = +1
Query: 88 ILRGGDPIGSYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNRE 267
IL+GGDP GSYPNFSFARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGF+TFRNRE
Sbjct: 2 ILKGGDPTGSYPNFSFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNRE 61
Query: 268 ISTGASAIREQLADLDLRIVID 333
ISTGA AIREQLADLDLR++ID
Sbjct: 62 ISTGAGAIREQLADLDLRLIID 83
>ref|YP_009164491.1| RNA polymerase beta (chloroplast) [Sedum oryzifolium]
gi|744672538|gb|AJD00142.1| RNA polymerase beta
(chloroplast) [Sedum oryzifolium]
Length = 697
Score = 155 bits (392), Expect = 1e-35
Identities = 73/83 (87%), Positives = 77/83 (92%)
Frame = +1
Query: 85 PILRGGDPIGSYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNR 264
PIL+GGDP GSYPNF FARPI KKPTFLRLRG FEYEIQSWKYSIPLFFTTQGF+TFRNR
Sbjct: 146 PILKGGDPTGSYPNFYFARPIAKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNR 205
Query: 265 EISTGASAIREQLADLDLRIVID 333
EISTGA AIREQL DLDLR++ID
Sbjct: 206 EISTGAGAIREQLVDLDLRLIID 228
>prf||1211235Q rpoC-like ORF 548
Length = 548
Score = 154 bits (390), Expect = 2e-35
Identities = 74/80 (92%), Positives = 77/80 (96%)
Frame = +1
Query: 94 RGGDPIGSYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREIS 273
RGGDPI SYPNFSFARPITKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGF+TFRNREIS
Sbjct: 1 RGGDPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREIS 60
Query: 274 TGASAIREQLADLDLRIVID 333
TGA AIREQLADLDLRI+I+
Sbjct: 61 TGAGAIREQLADLDLRIIIE 80
>ref|YP_009175996.1| RNA polymerase beta (chloroplast) [Ficus racemosa]
gi|937500934|gb|ALI30693.1| RNA polymerase beta
(chloroplast) [Ficus racemosa]
Length = 703
Score = 153 bits (387), Expect = 4e-35
Identities = 73/82 (89%), Positives = 76/82 (92%)
Frame = +1
Query: 88 ILRGGDPIGSYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNRE 267
IL+GGDP GSYPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+ FRNRE
Sbjct: 153 ILKGGDPTGSYPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDAFRNRE 212
Query: 268 ISTGASAIREQLADLDLRIVID 333
ISTGA AI EQL DLDLRI+ID
Sbjct: 213 ISTGAGAILEQLTDLDLRIIID 234
>ref|XP_006360368.1| PREDICTED: DNA-directed RNA polymerase subunit beta'-like [Solanum
tuberosum]
Length = 581
Score = 153 bits (387), Expect = 4e-35
Identities = 74/86 (86%), Positives = 79/86 (91%)
Frame = +1
Query: 76 LSRPILRGGDPIGSYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETF 255
+S +GGDPI SYPNFSFARPITKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGF+TF
Sbjct: 28 ISNSHAQGGDPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTF 87
Query: 256 RNREISTGASAIREQLADLDLRIVID 333
RNREISTGA AIREQLADLDLRI+I+
Sbjct: 88 RNREISTGAGAIREQLADLDLRIIIE 113
>gb|AGW97687.1| RNA polymerase beta (chloroplast) [Ipomoea pedicellaris]
Length = 718
Score = 152 bits (383), Expect = 1e-34
Identities = 74/80 (92%), Positives = 76/80 (95%)
Frame = +1
Query: 94 RGGDPIGSYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREIS 273
RGG PI SYPNFSFARPITKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGF+TFRNREIS
Sbjct: 172 RGGAPIESYPNFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFDTFRNREIS 231
Query: 274 TGASAIREQLADLDLRIVID 333
TGA AIREQLADLDLRIVI+
Sbjct: 232 TGAGAIREQLADLDLRIVIE 251
>ref|YP_009115673.1| RNA polymerase beta [Lysimachia coreana]
gi|743182456|gb|AJC00261.1| RNA polymerase beta
[Lysimachia coreana]
Length = 686
Score = 146 bits (368), Expect = 7e-33
Identities = 70/72 (97%), Positives = 72/72 (100%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGASAIRE
Sbjct: 146 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 205
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 206 QLADLDLRIIID 217
>ref|YP_006665771.1| RNA polymerase beta (chloroplast) [Elodea canadensis]
gi|374094587|gb|AEY84643.1| RNA polymerase beta
(chloroplast) [Elodea canadensis]
Length = 688
Score = 145 bits (367), Expect = 9e-33
Identities = 70/75 (93%), Positives = 73/75 (97%)
Frame = +1
Query: 109 IGSYPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASA 288
IG+YP+FSFARPITKKPTFLRLRG FEYEIQSWKYSIPLFFTTQGFETFRNREISTGA A
Sbjct: 145 IGTYPDFSFARPITKKPTFLRLRGLFEYEIQSWKYSIPLFFTTQGFETFRNREISTGAEA 204
Query: 289 IREQLADLDLRIVID 333
IREQLADLDLRI+ID
Sbjct: 205 IREQLADLDLRIIID 219
>ref|YP_007890364.1| RNA polymerase beta' subunit (chloroplast) [Ardisia polysticta]
gi|456367961|gb|AGG36875.1| RNA polymerase beta' subunit
(chloroplast) [Ardisia polysticta]
Length = 686
Score = 145 bits (366), Expect = 1e-32
Identities = 70/72 (97%), Positives = 72/72 (100%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGASAIRE
Sbjct: 146 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 205
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 206 QLADLDLRILID 217
>gb|AII17896.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum tinus]
Length = 540
Score = 144 bits (364), Expect = 2e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 61 QLADLDLRIIID 72
>gb|AII17895.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
taiwanianum]
Length = 540
Score = 144 bits (364), Expect = 2e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 61 QLADLDLRIIID 72
>gb|AII17892.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
plicatum]
Length = 540
Score = 144 bits (364), Expect = 2e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 61 QLADLDLRIIID 72
>gb|AII17885.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
erubescens] gi|669215633|gb|AII17886.1| RNA polymerase
beta subunit, partial (chloroplast) [Viburnum
grandiflorum] gi|669215639|gb|AII17889.1| RNA polymerase
beta subunit, partial (chloroplast) [Viburnum lutescens]
gi|669215649|gb|AII17894.1| RNA polymerase beta subunit,
partial (chloroplast) [Viburnum sieboldii]
Length = 540
Score = 144 bits (364), Expect = 2e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 61 QLADLDLRIIID 72
>gb|AII17883.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
dentatum] gi|669215641|gb|AII17890.1| RNA polymerase
beta subunit, partial (chloroplast) [Viburnum molle]
gi|669215655|gb|AII17897.1| RNA polymerase beta subunit,
partial (chloroplast) [Viburnum triphyllum]
Length = 540
Score = 144 bits (364), Expect = 2e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 61 QLADLDLRIIID 72
>gb|AII17881.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
clemensae]
Length = 540
Score = 144 bits (364), Expect = 2e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 61 QLADLDLRIIID 72
>gb|AII17880.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
cassinoides] gi|669215637|gb|AII17888.1| RNA polymerase
beta subunit, partial (chloroplast) [Viburnum lentago]
gi|669215647|gb|AII17893.1| RNA polymerase beta subunit,
partial (chloroplast) [Viburnum punctatum]
Length = 540
Score = 144 bits (364), Expect = 2e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 61 QLADLDLRIIID 72
>gb|AII17878.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
amplificatum]
Length = 540
Score = 144 bits (364), Expect = 2e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 61 QLADLDLRIIID 72
>gb|AII17877.1| RNA polymerase beta subunit, partial (chloroplast) [Viburnum
acerifolium] gi|669215625|gb|AII17882.1| RNA polymerase
beta subunit, partial (chloroplast) [Viburnum
cylindricum] gi|669215629|gb|AII17884.1| RNA polymerase
beta subunit, partial (chloroplast) [Viburnum dilatatum]
gi|669215635|gb|AII17887.1| RNA polymerase beta subunit,
partial (chloroplast) [Viburnum lantanoides]
gi|669215643|gb|AII17891.1| RNA polymerase beta subunit,
partial (chloroplast) [Viburnum opulus]
Length = 540
Score = 144 bits (364), Expect = 2e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGA AIRE
Sbjct: 1 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGAGAIRE 60
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 61 QLADLDLRIIID 72
>ref|YP_009048101.1| DNA-directed RNA polymerase beta' chain (chloroplast) [Primula
poissonii] gi|573015151|gb|AHF71733.1| DNA-directed RNA
polymerase beta' chain (chloroplast) [Primula poissonii]
Length = 686
Score = 144 bits (363), Expect = 3e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGASAIRE
Sbjct: 146 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 205
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 206 QLADLDLRIIID 217
>gb|AHE41649.1| RNA polymerase beta' subunit protein, partial (chloroplast)
[Rhodoleia championii]
Length = 639
Score = 144 bits (363), Expect = 3e-32
Identities = 69/72 (95%), Positives = 71/72 (98%)
Frame = +1
Query: 118 YPNFSFARPITKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFETFRNREISTGASAIRE 297
YPNFSFARPI KKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGF+TFRNREISTGASAIRE
Sbjct: 124 YPNFSFARPIAKKPTFLRLRGSFEYEIQSWKYSIPLFFTTQGFDTFRNREISTGASAIRE 183
Query: 298 QLADLDLRIVID 333
QLADLDLRI+ID
Sbjct: 184 QLADLDLRIIID 195