BLASTX nr result
ID: Ziziphus21_contig00016329
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ziziphus21_contig00016329
(1803 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prun... 644 0.0
ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 639 e-180
ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 639 e-180
ref|XP_009373754.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 611 e-172
ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 607 e-171
ref|XP_008379468.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 605 e-170
ref|XP_009378288.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 602 e-169
ref|XP_010261422.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 586 e-164
ref|XP_010261414.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 586 e-164
ref|NP_001289520.1| DNA-directed RNA polymerase 2, chloroplastic... 561 e-157
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 559 e-156
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 558 e-156
ref|XP_009619460.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 557 e-155
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 553 e-154
ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 551 e-154
ref|XP_011467851.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 533 e-148
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 523 e-145
ref|XP_008459412.1| PREDICTED: DNA-directed RNA polymerase 2B, c... 514 e-142
ref|XP_004141596.2| PREDICTED: DNA-directed RNA polymerase 2, ch... 509 e-141
ref|XP_008783046.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 507 e-140
>ref|XP_007214918.1| hypothetical protein PRUPE_ppa000719mg [Prunus persica]
gi|462411068|gb|EMJ16117.1| hypothetical protein
PRUPE_ppa000719mg [Prunus persica]
Length = 1024
Score = 644 bits (1660), Expect = 0.0
Identities = 332/519 (63%), Positives = 387/519 (74%), Gaps = 1/519 (0%)
Frame = -3
Query: 1555 MSCAKTPSISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDSH 1376
MS ++TP A+ S+ + P I PS +ST +WRNFA+QA SR RF +S
Sbjct: 1 MSRSQTPLSPANISKNF----TFHSPLIFHKNPSMISTTVWRNFAKQAISRKQRFHINSQ 56
Query: 1375 SFSRACSFLGKTEHSE-KLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGYGFV 1199
SFSRA S LG + S F+ FELSSCSS FSE GF G ISS +D + + + V
Sbjct: 57 SFSRAYSLLGICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGAISSPEDCMCKPSFWSV 116
Query: 1198 RNQVAGNIGICPKGYASVAEAVSSTEVEDDISAGEEIQELLQQMNKEEKKEILNMRRNHQ 1019
RN + N G CPKGYASVAEAVSST+VE+++S +E+QELLQQM+ EEK+E +R Q
Sbjct: 117 RNPIWFN-GFCPKGYASVAEAVSSTDVEEEVSVVDEVQELLQQMSIEEKREAQYKQRTRQ 175
Query: 1018 KMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSLFLGWF 839
RGMG+ KY +L+RRQ+KIETEAWE+A KEY+EL+MDMCEQKLAPNLPYMKSLFLGWF
Sbjct: 176 NRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWF 235
Query: 838 EPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGTARVVP 659
EPLRNAI KEQ+LCR+GKNK AYAPY DQLPA+MM+VITMHKLMGLLMTGGEHGT RVV
Sbjct: 236 EPLRNAIDKEQDLCRKGKNKTAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVA 295
Query: 658 AACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXXXXXLR 479
AAC IG+AIEQEVRI +F + + L+
Sbjct: 296 AACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGESDAAKKEREKLNKKVTNLMKKQKLK 355
Query: 478 AVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAFLHTFR 299
AVR IV + D KSW +ARAKVGSRLIELLT+TA IQPPADQ ADGPPD+RPAF+HTFR
Sbjct: 356 AVRGIVSKHDASKSWSLEARAKVGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFR 415
Query: 298 TVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGHLYLPS 119
TV K+AKN RRYGVIECDPLVLKGL++TARHMVIPYMPMLVPP+NWTGYDKGG+ +LPS
Sbjct: 416 TVAKDAKNASRRYGVIECDPLVLKGLEKTARHMVIPYMPMLVPPLNWTGYDKGGYFFLPS 475
Query: 118 YVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
YVMR HGARQQREA+KR PREQLEPVF+ALDALGNT+WR
Sbjct: 476 YVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWR 514
>ref|XP_008230318.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
isoform X2 [Prunus mume]
Length = 862
Score = 639 bits (1648), Expect = e-180
Identities = 328/519 (63%), Positives = 385/519 (74%), Gaps = 1/519 (0%)
Frame = -3
Query: 1555 MSCAKTPSISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDSH 1376
MS ++TP A+ S+ + P I PS +ST +WRNFA+QA SR RF +S
Sbjct: 1 MSSSQTPLSPANISKNF----TFHSPLIFHKNPSMISTTVWRNFAKQAISRKQRFHINSQ 56
Query: 1375 SFSRACSFLGKTEHSE-KLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGYGFV 1199
SFSRA S L + S F+ FELSSCSS FSE GF G ISS +D + + + V
Sbjct: 57 SFSRAYSLLRICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGTISSPEDCMCKPSFWSV 116
Query: 1198 RNQVAGNIGICPKGYASVAEAVSSTEVEDDISAGEEIQELLQQMNKEEKKEILNMRRNHQ 1019
RN + N G CPKGYASVAEAVSST+VE+D+S +E+QELLQQM+ EEK+E +R Q
Sbjct: 117 RNPIGFN-GFCPKGYASVAEAVSSTDVEEDVSVVDEVQELLQQMSIEEKREAQYKQRTRQ 175
Query: 1018 KMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSLFLGWF 839
RGMG+ KY +L+RRQ+KIETEAWE+A KEY+EL+MDMCEQKLAPNLPYMKSLFLGWF
Sbjct: 176 NRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWF 235
Query: 838 EPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGTARVVP 659
EPLRNAI EQ+LCR+GK K AYAPY DQLPA+MM+VITMHKLMGLLMTGGEHGT RVV
Sbjct: 236 EPLRNAIDNEQDLCRKGKKKAAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVA 295
Query: 658 AACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXXXXXLR 479
AAC IG+AIEQEVRI +F M + + L+
Sbjct: 296 AACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGESDAAMKEREKLNKKVTNLMKKQKLK 355
Query: 478 AVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAFLHTFR 299
AVR IV + D KSW +ARAK+GSRLIELLT+TA IQPPADQ ADGPPD+RPAF+HTFR
Sbjct: 356 AVRGIVSKHDASKSWSLEARAKIGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFR 415
Query: 298 TVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGHLYLPS 119
TV K+AKN RRYGVIECDPLVLKGL++TARH++IPYMPMLVPP+NWTGYDKGG+ +LPS
Sbjct: 416 TVAKDAKNASRRYGVIECDPLVLKGLEKTARHVMIPYMPMLVPPLNWTGYDKGGYFFLPS 475
Query: 118 YVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
YVMR HGARQQREA+KR PREQLEPVF+ALDALGNT+WR
Sbjct: 476 YVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWR 514
>ref|XP_008230317.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
isoform X1 [Prunus mume]
Length = 1024
Score = 639 bits (1648), Expect = e-180
Identities = 328/519 (63%), Positives = 385/519 (74%), Gaps = 1/519 (0%)
Frame = -3
Query: 1555 MSCAKTPSISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDSH 1376
MS ++TP A+ S+ + P I PS +ST +WRNFA+QA SR RF +S
Sbjct: 1 MSSSQTPLSPANISKNF----TFHSPLIFHKNPSMISTTVWRNFAKQAISRKQRFHINSQ 56
Query: 1375 SFSRACSFLGKTEHSE-KLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGYGFV 1199
SFSRA S L + S F+ FELSSCSS FSE GF G ISS +D + + + V
Sbjct: 57 SFSRAYSLLRICQESVFPGNFKPFELSSCSSLRFSEVGFRGKGTISSPEDCMCKPSFWSV 116
Query: 1198 RNQVAGNIGICPKGYASVAEAVSSTEVEDDISAGEEIQELLQQMNKEEKKEILNMRRNHQ 1019
RN + N G CPKGYASVAEAVSST+VE+D+S +E+QELLQQM+ EEK+E +R Q
Sbjct: 117 RNPIGFN-GFCPKGYASVAEAVSSTDVEEDVSVVDEVQELLQQMSIEEKREAQYKQRTRQ 175
Query: 1018 KMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSLFLGWF 839
RGMG+ KY +L+RRQ+KIETEAWE+A KEY+EL+MDMCEQKLAPNLPYMKSLFLGWF
Sbjct: 176 NRARGMGQGKYHMLKRRQIKIETEAWERAAKEYRELMMDMCEQKLAPNLPYMKSLFLGWF 235
Query: 838 EPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGTARVVP 659
EPLRNAI EQ+LCR+GK K AYAPY DQLPA+MM+VITMHKLMGLLMTGGEHGT RVV
Sbjct: 236 EPLRNAIDNEQDLCRKGKKKAAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVA 295
Query: 658 AACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXXXXXLR 479
AAC IG+AIEQEVRI +F M + + L+
Sbjct: 296 AACTIGEAIEQEVRIHKFLEMTRKKKVDKDQENGESDAAMKEREKLNKKVTNLMKKQKLK 355
Query: 478 AVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAFLHTFR 299
AVR IV + D KSW +ARAK+GSRLIELLT+TA IQPPADQ ADGPPD+RPAF+HTFR
Sbjct: 356 AVRGIVSKHDASKSWSLEARAKIGSRLIELLTQTAFIQPPADQLADGPPDIRPAFVHTFR 415
Query: 298 TVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGHLYLPS 119
TV K+AKN RRYGVIECDPLVLKGL++TARH++IPYMPMLVPP+NWTGYDKGG+ +LPS
Sbjct: 416 TVAKDAKNASRRYGVIECDPLVLKGLEKTARHVMIPYMPMLVPPLNWTGYDKGGYFFLPS 475
Query: 118 YVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
YVMR HGARQQREA+KR PREQLEPVF+ALDALGNT+WR
Sbjct: 476 YVMRIHGARQQREAIKRTPREQLEPVFKALDALGNTRWR 514
>ref|XP_009373754.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Pyrus x bretschneideri]
Length = 1024
Score = 611 bits (1575), Expect = e-172
Identities = 314/520 (60%), Positives = 378/520 (72%), Gaps = 2/520 (0%)
Frame = -3
Query: 1555 MSCAKTPSISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDSH 1376
MSC +TP A+ ++ + ++ P + PS +ST +WRN A+QA S N R R S
Sbjct: 1 MSCIQTPFPPANTTK----NCAFQIPIVFHKSPSMISTSLWRNLAKQAISGNQRCRLSSQ 56
Query: 1375 SFSRACSFLGKTEHSE-KLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGYGFV 1199
S SRA S L + S KF+ FE SC GF E GFC GEISS + + G V
Sbjct: 57 SISRAYSLLRFSRESVFSEKFKPFETGSCLK-GFPEVGFCGKGEISSGESYMGNPSLGSV 115
Query: 1198 RNQVAGNIGICPKGYASVAEAVSSTEVEDDISAGEEIQELLQQMNKEEKKEILNMRRNHQ 1019
RN + N G CPKGYAS+AEAVSST+ E+D+S +E+QELLQQM+KE K++ + RR Q
Sbjct: 116 RNPIGFN-GFCPKGYASIAEAVSSTDAEEDVSVVDEVQELLQQMSKEGKRQTDHWRRMRQ 174
Query: 1018 KMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSLFLGWF 839
+ VRGMG+ KY L+RRQ+KIETEAWE+A KEY+EL+MDMCE KLAPNLPYMKSLFLGWF
Sbjct: 175 RRVRGMGQAKYLALKRRQIKIETEAWERAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWF 234
Query: 838 EPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGTARVVP 659
EPLRNAI EQ+LCR+GKNK AYAPYFDQLPA+MM+VITMHKLMGLLMTGGEHGT RVV
Sbjct: 235 EPLRNAIEHEQDLCRKGKNKAAYAPYFDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVA 294
Query: 658 AACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXXXXXLR 479
AAC IG+AIEQEVRI F M +++ LR
Sbjct: 295 AACTIGEAIEQEVRIHNFLEQTRKKKVNKDEENRESDDVMKEQEKLNKKVTKLMKKQKLR 354
Query: 478 AVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAFLHTFR 299
AVR IV++ D K W +A+AKVGSRLIELL +TA IQPPADQSAD PPD+RPAF+HT
Sbjct: 355 AVRHIVRKYDASKPWSLEAKAKVGSRLIELLIQTAFIQPPADQSADSPPDIRPAFVHTLM 414
Query: 298 TVVKNAKN-TGRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGHLYLP 122
TV K+ +N T RR+GVI+C+PLVLKGL++TA HMVIPYMPMLVPPVNW GYD+GG+ +LP
Sbjct: 415 TVTKDPRNTTSRRFGVIQCNPLVLKGLEKTASHMVIPYMPMLVPPVNWIGYDRGGYFFLP 474
Query: 121 SYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
SYVMRTHGA+QQREA+K+ PR+QLEPVF+ALD LGNT+WR
Sbjct: 475 SYVMRTHGAKQQREAIKKTPRQQLEPVFKALDTLGNTRWR 514
>ref|XP_010257888.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Nelumbo nucifera]
Length = 1031
Score = 607 bits (1566), Expect = e-171
Identities = 324/521 (62%), Positives = 373/521 (71%), Gaps = 3/521 (0%)
Frame = -3
Query: 1555 MSCAKTPSISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDSH 1376
MS T S + S + Q K + S +ST MWR+ AR+A +R DS
Sbjct: 1 MSSNATLISSTNLSNKFVYLIQVDKATFCPPNSSRISTAMWRHIARRASLTKVRLSRDSS 60
Query: 1375 SFSRACSFLGKTEHSE-KLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGYGFV 1199
S R F+G ++ S R FEL S S+ FSE F RNGE+ S +D + R G
Sbjct: 61 SILRTFGFMGFSQDSILNDTTRPFELKSSMSFRFSERSFLRNGELPSKEDELGRPILGCF 120
Query: 1198 RNQVAG-NIGICPKGYASVAEAVSSTEVEDDISAGEEIQELLQQMNKEEKKEILNMRRNH 1022
RN ++ + PKGYASVAEAV S + E+D+SA +EIQELL++M KEEKKE+ +
Sbjct: 121 RNPISPPRLSNHPKGYASVAEAVCSMDAEEDLSAIDEIQELLEEMGKEEKKELELRDQKQ 180
Query: 1021 QKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSLFLGW 842
K+V GMG+ KY +LRRRQVKIETEAWEQA KEY+ELLMDMCEQKLAPNLPYMKSLFLGW
Sbjct: 181 IKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYRELLMDMCEQKLAPNLPYMKSLFLGW 240
Query: 841 FEPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGTARVV 662
FEPLR+ I EQELCR+GKN+ AYAPYFDQLPAEMM+VITMHKLMGLLMTGGEHG+ RVV
Sbjct: 241 FEPLRDCIVAEQELCRKGKNRTAYAPYFDQLPAEMMSVITMHKLMGLLMTGGEHGSCRVV 300
Query: 661 PAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKE-QXXXXXXXXXXXXXX 485
AAC IG+AIE EVRI +F +IKE Q
Sbjct: 301 QAACQIGEAIENEVRIHKFLEKTRKKTDKDKKADGGESDPVIKEQQRLRKKVTDLMKKQK 360
Query: 484 LRAVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAFLHT 305
L+ VRQIVK QDD K WGQDA+AKVGSRLIELL +TA+IQPP DQ ADGPPD+RPAF H+
Sbjct: 361 LQQVRQIVKGQDDSKPWGQDAQAKVGSRLIELLMQTAYIQPPVDQLADGPPDIRPAFRHS 420
Query: 304 FRTVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGHLYL 125
+TV K A+ T RRYGVIECDPLV KGL+RTARHMVIPYMPMLVPPVNWTGYDKG +L+L
Sbjct: 421 LKTVTKEAQKTSRRYGVIECDPLVRKGLERTARHMVIPYMPMLVPPVNWTGYDKGAYLFL 480
Query: 124 PSYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
PSYVMRTHGARQQREAVKRAPR+QLEPVFEALD LGNTKWR
Sbjct: 481 PSYVMRTHGARQQREAVKRAPRKQLEPVFEALDTLGNTKWR 521
>ref|XP_008379468.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Malus domestica]
Length = 1025
Score = 605 bits (1561), Expect = e-170
Identities = 311/520 (59%), Positives = 376/520 (72%), Gaps = 2/520 (0%)
Frame = -3
Query: 1555 MSCAKTPSISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDSH 1376
MSCA+TP A+F++ +R P PS +ST +WRN A+QA RN R R +S
Sbjct: 1 MSCAQTPFSPANFTKNF----TFRIPIGFHKNPSMISTSLWRNLAKQAIPRNQRGRLNSQ 56
Query: 1375 SFSRACSFLGKTEHSEKLK-FRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGYGFV 1199
S SRA S L + S + F+ F+L S S+ GF E GF GEIS+ + + Y V
Sbjct: 57 SISRAYSLLCFSXESVSPQXFKPFQLGSYSNMGFPEVGFPGKGEISTSESYLGNPSYWSV 116
Query: 1198 RNQVAGNIGICPKGYASVAEAVSSTEVEDDISAGEEIQELLQQMNKEEKKEILNMRRNHQ 1019
R + N G C KGYASVAE VSST+ E+D+S +E+QELLQQM+KE K++ + RR
Sbjct: 117 RTPIGFN-GFCAKGYASVAEVVSSTDAEEDVSLVDEVQELLQQMSKEGKRQTDHWRRMRL 175
Query: 1018 KMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSLFLGWF 839
+ VRGMG+ KY L+RRQ+KIETEAWE+A KEY+EL+MDMCE KLAPNLPYMKSLFLGWF
Sbjct: 176 RRVRGMGQAKYLALKRRQIKIETEAWERAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWF 235
Query: 838 EPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGTARVVP 659
EP+RNAI KEQ+LCR+GKNK AYAPY DQLPA+MM+VITMHKLMGLLMT GEHGT RVV
Sbjct: 236 EPMRNAIEKEQDLCRKGKNKAAYAPYIDQLPADMMSVITMHKLMGLLMTXGEHGTCRVVA 295
Query: 658 AACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXXXXXLR 479
AAC IG+AIE EVRI F + +++ L+
Sbjct: 296 AACTIGEAIEHEVRIHNFLERTRKKKVNKDEENRVSDDVLKEQEKLNKKVTNLMKKQKLQ 355
Query: 478 AVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAFLHTFR 299
VR IV++ D K W QDARAKVGSRLIELL +TA IQPPADQ ADGPPD+RPAF+HTFR
Sbjct: 356 VVRHIVRKHDASKPWSQDARAKVGSRLIELLIQTAFIQPPADQLADGPPDIRPAFIHTFR 415
Query: 298 TVVKNAKNT-GRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGHLYLP 122
TV+K+ KNT RR+GVI+CDPLVLKG ++T H+VIPYMPMLVPPVNWTGYD+GG+ +LP
Sbjct: 416 TVMKDPKNTSSRRFGVIQCDPLVLKGFEKTGSHLVIPYMPMLVPPVNWTGYDRGGYFFLP 475
Query: 121 SYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
SYVMRTHGA+QQREA+KR PREQLEPVF+ALD LGNT+W+
Sbjct: 476 SYVMRTHGAKQQREAIKRTPREQLEPVFKALDTLGNTRWK 515
>ref|XP_009378288.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Pyrus x bretschneideri]
Length = 1025
Score = 602 bits (1551), Expect = e-169
Identities = 310/520 (59%), Positives = 373/520 (71%), Gaps = 2/520 (0%)
Frame = -3
Query: 1555 MSCAKTPSISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDSH 1376
MSCA+ P A+F++ +R P PS + T +WRN A+QA RN R R +S
Sbjct: 1 MSCAQIPFSPANFTKNF----TFRIPIGFHKNPSMIFTSLWRNLAKQAIPRNQRGRLNSQ 56
Query: 1375 SFSRACSFLGKTEHS-EKLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGYGFV 1199
S SRA S LG + S F+ F+L S S+ GF E GF GEIS+ + + Y V
Sbjct: 57 SISRAYSLLGFSRESVSPQSFKPFQLGSYSNMGFPEVGFPGKGEISTGESYMGNPSYWSV 116
Query: 1198 RNQVAGNIGICPKGYASVAEAVSSTEVEDDISAGEEIQELLQQMNKEEKKEILNMRRNHQ 1019
R + N G P+GYASVAE VSST+ E+D+S +E+QELLQQM+KE K++ + RR
Sbjct: 117 RTPIGFN-GFFPRGYASVAEVVSSTDAEEDVSLVDEVQELLQQMSKEGKRQTDHWRRMRL 175
Query: 1018 KMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSLFLGWF 839
+ VRGMG+ KY L+RRQ+KIETEAWE+A KEY+EL+MDMCE KLAPNLPYMKSLFLGWF
Sbjct: 176 RRVRGMGQAKYFALKRRQIKIETEAWERAAKEYRELMMDMCEHKLAPNLPYMKSLFLGWF 235
Query: 838 EPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGTARVVP 659
EP+RNAI KEQ+LCR+GKNK AYAPY DQLPA+MM+VITMHKLMGLLMTGGEHGT RVV
Sbjct: 236 EPMRNAIEKEQDLCRKGKNKAAYAPYIDQLPADMMSVITMHKLMGLLMTGGEHGTCRVVS 295
Query: 658 AACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXXXXXLR 479
AAC IG+AIE EVRI F + +++ L+
Sbjct: 296 AACTIGEAIEHEVRIHNFLERTRKKKFNKEEENRESGDVLKEQEKLNKKVTNLMKKQKLQ 355
Query: 478 AVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAFLHTFR 299
AVR IV++ D K W QDARAKVGSRLIELL +T+ IQPPADQ ADGPPD+RPAF+HTFR
Sbjct: 356 AVRHIVRKHDASKPWSQDARAKVGSRLIELLIQTSFIQPPADQLADGPPDLRPAFIHTFR 415
Query: 298 TVVKNAKNT-GRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGHLYLP 122
TV K+ KNT RR+GVI+CDPLVLKG ++T HMVIPYMPMLVPPVNWTGYD+GG+ +LP
Sbjct: 416 TVAKDPKNTSSRRFGVIQCDPLVLKGFEKTGSHMVIPYMPMLVPPVNWTGYDRGGYFFLP 475
Query: 121 SYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
SYVMR HGA+QQREA+KR P EQLEPVF+ALD LGNT+WR
Sbjct: 476 SYVMRIHGAKQQREAIKRTPSEQLEPVFKALDTLGNTRWR 515
>ref|XP_010261422.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like isoform X2 [Nelumbo
nucifera]
Length = 942
Score = 586 bits (1511), Expect = e-164
Identities = 306/482 (63%), Positives = 354/482 (73%), Gaps = 3/482 (0%)
Frame = -3
Query: 1438 MWRNFARQAFSRNLRFRPDSHSFSRACSFLGKTEHSE-KLKFRSFELSSCSSYGFSETGF 1262
MWRN +QA S N F DS S R +G +++ K R FE S + GFSE+ F
Sbjct: 1 MWRNIVKQACSTNF-FSRDSSSMLRTFGVVGYSQYPVFHDKARQFEFKSSINAGFSESCF 59
Query: 1261 CRNGEISSHDDPVSRLGYGFVRNQVA-GNIGICPKGYASVAEAVSSTEVEDDISAGEEIQ 1085
RNGE S +D + L +G RN + PKGYASVAE +SST+ E+D+S +EIQ
Sbjct: 60 LRNGESPSKEDDLGILSFGCFRNSMGLSRFSNHPKGYASVAEVLSSTDAEEDVSVVDEIQ 119
Query: 1084 ELLQQMNKEEKKEILNMRRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLM 905
ELL++M+KEEK E+ + K+V GMG+ KY +LRRRQVKIETEAWEQA KEYKELLM
Sbjct: 120 ELLEEMSKEEK-ELEFSHQKQTKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYKELLM 178
Query: 904 DMCEQKLAPNLPYMKSLFLGWFEPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVI 725
DMCEQKLAPNLPYMKSLFLGWFEPLR+ IA EQELCR+GKN+ AYAPYFDQLPAEMM+VI
Sbjct: 179 DMCEQKLAPNLPYMKSLFLGWFEPLRDCIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVI 238
Query: 724 TMHKLMGLLMTGGEHGTARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXX 545
TMHKL+GLLMTGGEHG+ARVV AAC+IG AIE EVRI +F
Sbjct: 239 TMHKLVGLLMTGGEHGSARVVQAACLIGQAIENEVRIYKFLEKTKKKTDKDKKAEGGESD 298
Query: 544 TMIKEQXXXXXXXXXXXXXXL-RAVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHI 368
IKEQ + VRQIVK QDD K WGQDA+AKVGS LIELL +TA+I
Sbjct: 299 PAIKEQQRLRKKVTDLMKKQKLQQVRQIVKSQDDSKPWGQDAQAKVGSHLIELLMQTAYI 358
Query: 367 QPPADQSADGPPDVRPAFLHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPY 188
Q PADQ ADGPPD+RPAF HT +T+ K ++ T RRYG+IECDPLV KGL+RTARHMVIPY
Sbjct: 359 QSPADQLADGPPDIRPAFRHTLKTITKESQKTSRRYGLIECDPLVRKGLERTARHMVIPY 418
Query: 187 MPMLVPPVNWTGYDKGGHLYLPSYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTK 8
MPMLVPP+NWTGYDKG +L+LPSYVMRTHGARQQREAVKR R+QLEP+FEALD LGNTK
Sbjct: 419 MPMLVPPLNWTGYDKGAYLFLPSYVMRTHGARQQREAVKRTSRKQLEPIFEALDTLGNTK 478
Query: 7 WR 2
WR
Sbjct: 479 WR 480
>ref|XP_010261414.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like isoform X1 [Nelumbo
nucifera]
Length = 990
Score = 586 bits (1511), Expect = e-164
Identities = 306/482 (63%), Positives = 354/482 (73%), Gaps = 3/482 (0%)
Frame = -3
Query: 1438 MWRNFARQAFSRNLRFRPDSHSFSRACSFLGKTEHSE-KLKFRSFELSSCSSYGFSETGF 1262
MWRN +QA S N F DS S R +G +++ K R FE S + GFSE+ F
Sbjct: 1 MWRNIVKQACSTNF-FSRDSSSMLRTFGVVGYSQYPVFHDKARQFEFKSSINAGFSESCF 59
Query: 1261 CRNGEISSHDDPVSRLGYGFVRNQVA-GNIGICPKGYASVAEAVSSTEVEDDISAGEEIQ 1085
RNGE S +D + L +G RN + PKGYASVAE +SST+ E+D+S +EIQ
Sbjct: 60 LRNGESPSKEDDLGILSFGCFRNSMGLSRFSNHPKGYASVAEVLSSTDAEEDVSVVDEIQ 119
Query: 1084 ELLQQMNKEEKKEILNMRRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLM 905
ELL++M+KEEK E+ + K+V GMG+ KY +LRRRQVKIETEAWEQA KEYKELLM
Sbjct: 120 ELLEEMSKEEK-ELEFSHQKQTKLVGGMGQGKYLLLRRRQVKIETEAWEQAAKEYKELLM 178
Query: 904 DMCEQKLAPNLPYMKSLFLGWFEPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVI 725
DMCEQKLAPNLPYMKSLFLGWFEPLR+ IA EQELCR+GKN+ AYAPYFDQLPAEMM+VI
Sbjct: 179 DMCEQKLAPNLPYMKSLFLGWFEPLRDCIAAEQELCRKGKNRAAYAPYFDQLPAEMMSVI 238
Query: 724 TMHKLMGLLMTGGEHGTARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXX 545
TMHKL+GLLMTGGEHG+ARVV AAC+IG AIE EVRI +F
Sbjct: 239 TMHKLVGLLMTGGEHGSARVVQAACLIGQAIENEVRIYKFLEKTKKKTDKDKKAEGGESD 298
Query: 544 TMIKEQXXXXXXXXXXXXXXL-RAVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHI 368
IKEQ + VRQIVK QDD K WGQDA+AKVGS LIELL +TA+I
Sbjct: 299 PAIKEQQRLRKKVTDLMKKQKLQQVRQIVKSQDDSKPWGQDAQAKVGSHLIELLMQTAYI 358
Query: 367 QPPADQSADGPPDVRPAFLHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPY 188
Q PADQ ADGPPD+RPAF HT +T+ K ++ T RRYG+IECDPLV KGL+RTARHMVIPY
Sbjct: 359 QSPADQLADGPPDIRPAFRHTLKTITKESQKTSRRYGLIECDPLVRKGLERTARHMVIPY 418
Query: 187 MPMLVPPVNWTGYDKGGHLYLPSYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTK 8
MPMLVPP+NWTGYDKG +L+LPSYVMRTHGARQQREAVKR R+QLEP+FEALD LGNTK
Sbjct: 419 MPMLVPPLNWTGYDKGAYLFLPSYVMRTHGARQQREAVKRTSRKQLEPIFEALDTLGNTK 478
Query: 7 WR 2
WR
Sbjct: 479 WR 480
>ref|NP_001289520.1| DNA-directed RNA polymerase 2, chloroplastic/mitochondrial [Nicotiana
sylvestris] gi|90111039|sp|Q8VWF8.2|RPOT2_NICSY RecName:
Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor [Nicotiana sylvestris]
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 561 bits (1446), Expect = e-157
Identities = 312/526 (59%), Positives = 360/526 (68%), Gaps = 8/526 (1%)
Frame = -3
Query: 1555 MSCAKTPSISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDSH 1376
MS KTP S I + KP+ + P S +MWRN +Q SR P
Sbjct: 1 MSSTKTP-----ISLTIKLNQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRT----PQKL 51
Query: 1375 SFS---RACSFLGKTEHS---EKLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRL 1214
FS R SFLG + S + KFRS SCS+ GF GE D+ +SR
Sbjct: 52 LFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVM---GFQNLGEYLPGDEFLSR- 107
Query: 1213 GYGFVRNQVAGNIGICPKGYASVAEAV--SSTEVEDDISAGEEIQELLQQMNKEEKKEIL 1040
++NQV N C K YASVAEAV SST+ E+D+S +E+ ELL ++ KEEKK+
Sbjct: 108 --PLIKNQVNNNF-CCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFA 164
Query: 1039 NMRRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMK 860
RR + + GMG +KYQ L+RRQVK+ETEAWEQA KEYKELL DMCEQKLAPNLPY+K
Sbjct: 165 FRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVK 224
Query: 859 SLFLGWFEPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEH 680
SLFLGWFEPLR+ IA+EQELC QGK+K AYA YF QLPA+MMAVITMHKLMGLLMTGG+H
Sbjct: 225 SLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDH 284
Query: 679 GTARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXX 500
GTARVV AA +IGDAIEQEVRI F +++
Sbjct: 285 GTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNL 344
Query: 499 XXXXXLRAVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRP 320
LRAV QIV+RQDD K WGQDARAKVGSRLI+LL +TA+IQPPA+Q A PPD+RP
Sbjct: 345 MKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRP 404
Query: 319 AFLHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKG 140
AF+H+ RTV K K+ RRYG+I+CD LV KGL+RTARHMVIPYMPMLVPPV WTGYDKG
Sbjct: 405 AFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKG 464
Query: 139 GHLYLPSYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
GHLYLPSYVMRTHGARQQREAVKRA R QL+PVFEALD LGNTKWR
Sbjct: 465 GHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWR 510
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
[Nicotiana tabacum] gi|21425665|emb|CAC95020.1|
mitochondrial and chloroplast RNA polymerase [Nicotiana
tabacum]
Length = 1021
Score = 559 bits (1441), Expect = e-156
Identities = 302/490 (61%), Positives = 347/490 (70%), Gaps = 8/490 (1%)
Frame = -3
Query: 1447 STLMWRNFARQAFSRNLRFRPDSHSFS---RACSFLGKTEHS---EKLKFRSFELSSCSS 1286
S +MWRN +Q SR P FS R SFLG + S + KFRS SCS+
Sbjct: 32 SPIMWRNIIKQLSSRT----PQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSN 87
Query: 1285 YGFSETGFCRNGEISSHDDPVSRLGYGFVRNQVAGNIGICPKGYASVAEAV--SSTEVED 1112
GF GE D+ +SR ++NQV N C K YASVAEAV SST+ E+
Sbjct: 88 IVM---GFQNLGEYLPGDEFLSR---PLLKNQVNSNDFCCRKSYASVAEAVAVSSTDAEE 141
Query: 1111 DISAGEEIQELLQQMNKEEKKEILNMRRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQA 932
D+S +E+QELL ++ KEEKK+ RR + + GMG +KYQ L+RRQVK+ETEAWEQA
Sbjct: 142 DVSVVDEVQELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQA 201
Query: 931 LKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIAKEQELCRQGKNKPAYAPYFDQ 752
KEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLR+ IA+EQELC QGK+K AYA Y Q
Sbjct: 202 AKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQ 261
Query: 751 LPAEMMAVITMHKLMGLLMTGGEHGTARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXX 572
LPA+MMAVITMHKLMGLLMTGG+HGTARVV AA +IGDAIEQEVRI F
Sbjct: 262 LPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEK 321
Query: 571 XXXXXXXXXTMIKEQXXXXXXXXXXXXXXLRAVRQIVKRQDDLKSWGQDARAKVGSRLIE 392
+++ LRAV QIV+RQDD K WGQDA+AKVGSRLIE
Sbjct: 322 DKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIE 381
Query: 391 LLTETAHIQPPADQSADGPPDVRPAFLHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRT 212
LL +TA+IQPPA+Q A PPD+RPAFLH+ RTV K K+ RRYG+I+CD LV KGL+RT
Sbjct: 382 LLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERT 441
Query: 211 ARHMVIPYMPMLVPPVNWTGYDKGGHLYLPSYVMRTHGARQQREAVKRAPREQLEPVFEA 32
ARHMVIPYMPMLVPPV WTGYDKGGHLYLPSYVMRTHGARQQREAVKRA R QL+PVFEA
Sbjct: 442 ARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEA 501
Query: 31 LDALGNTKWR 2
LD LG+TKWR
Sbjct: 502 LDTLGSTKWR 511
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 558 bits (1439), Expect = e-156
Identities = 311/526 (59%), Positives = 359/526 (68%), Gaps = 8/526 (1%)
Frame = -3
Query: 1555 MSCAKTPSISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDSH 1376
MS KTP S I + KP+ + P S +MWRN +Q SR P
Sbjct: 1 MSSTKTP-----ISLTIKLNQFTDKPTGLDINPYHNSPIMWRNIIKQLSSRT----PQKL 51
Query: 1375 SFS---RACSFLGKTEHS---EKLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRL 1214
FS R SFLG + S + KFRS SCS+ GF GE D+ +SR
Sbjct: 52 LFSSKNRTYSFLGFGQDSIFKDNTKFRSLIPISCSNIVM---GFQNLGEYLPGDEFLSR- 107
Query: 1213 GYGFVRNQVAGNIGICPKGYASVAEAV--SSTEVEDDISAGEEIQELLQQMNKEEKKEIL 1040
++NQV N C K YASVAEAV SST+ E+D+S +E+ ELL ++ KEEKK+
Sbjct: 108 --PLIKNQVNNNF-CCRKSYASVAEAVAVSSTDAEEDVSVVDEVHELLTELKKEEKKQFA 164
Query: 1039 NMRRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMK 860
RR + + GMG +KYQ L+RRQVK+ETEAWEQA KEYKELL DMCEQKLAPNLPY+K
Sbjct: 165 FRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVK 224
Query: 859 SLFLGWFEPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEH 680
SLFLGWFEPLR+ IA+EQELC QGK+K AYA YF QLPA+MMAVITMHKLMGLLMTGG+H
Sbjct: 225 SLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDH 284
Query: 679 GTARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXX 500
GTARVV AA +IGDAIEQEVRI F +++
Sbjct: 285 GTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNL 344
Query: 499 XXXXXLRAVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRP 320
LRAV QIV+RQDD K WGQDARAKVGSRLI+LL +TA+IQPPA+Q A PPD+ P
Sbjct: 345 MKKQKLRAVGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPP 404
Query: 319 AFLHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKG 140
AF+H+ RTV K K+ RRYG+I+CD LV KGL+RTARHMVIPYMPMLVPPV WTGYDKG
Sbjct: 405 AFVHSVRTVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKG 464
Query: 139 GHLYLPSYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
GHLYLPSYVMRTHGARQQREAVKRA R QL+PVFEALD LGNTKWR
Sbjct: 465 GHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWR 510
>ref|XP_009619460.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Nicotiana tomentosiformis]
Length = 1021
Score = 557 bits (1436), Expect = e-155
Identities = 301/490 (61%), Positives = 347/490 (70%), Gaps = 8/490 (1%)
Frame = -3
Query: 1447 STLMWRNFARQAFSRNLRFRPDSHSFS---RACSFLGKTEHS---EKLKFRSFELSSCSS 1286
S +MWRN +Q SR P FS R SFLG + S + KFRS SCS+
Sbjct: 32 SPIMWRNIIKQLSSRT----PQKLLFSSKNRTYSFLGFGQDSVFKDNTKFRSLIPISCSN 87
Query: 1285 YGFSETGFCRNGEISSHDDPVSRLGYGFVRNQVAGNIGICPKGYASVAEAV--SSTEVED 1112
GF GE D+ +SR +++QV N C K YASVAEAV SST+ E+
Sbjct: 88 IVM---GFQNLGEYLPGDEFLSR---PLLKSQVNSNDFCCRKSYASVAEAVAVSSTDAEE 141
Query: 1111 DISAGEEIQELLQQMNKEEKKEILNMRRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQA 932
D+S +E+QELL ++ KEEKK+ RR + + GMG +KYQ L+RRQVK+ETEAWEQA
Sbjct: 142 DVSVVDEVQELLTELKKEEKKQFAFRRRKQRMLTSGMGHRKYQTLKRRQVKVETEAWEQA 201
Query: 931 LKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIAKEQELCRQGKNKPAYAPYFDQ 752
KEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLR+ IA+EQELC QGK+K AYA Y Q
Sbjct: 202 AKEYKELLFDMCEQKLAPNLPYVKSLFLGWFEPLRDKIAEEQELCSQGKSKAAYAKYLYQ 261
Query: 751 LPAEMMAVITMHKLMGLLMTGGEHGTARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXX 572
LPA+MMAVITMHKLMGLLMTGG+HGTARVV AA +IGDAIEQEVRI F
Sbjct: 262 LPADMMAVITMHKLMGLLMTGGDHGTARVVQAALVIGDAIEQEVRIHNFLEKTKKQKAEK 321
Query: 571 XXXXXXXXXTMIKEQXXXXXXXXXXXXXXLRAVRQIVKRQDDLKSWGQDARAKVGSRLIE 392
+++ LRAV QIV+RQDD K WGQDA+AKVGSRLIE
Sbjct: 322 DKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRAVGQIVRRQDDSKPWGQDAKAKVGSRLIE 381
Query: 391 LLTETAHIQPPADQSADGPPDVRPAFLHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRT 212
LL +TA+IQPPA+Q A PPD+RPAFLH+ RTV K K+ RRYG+I+CD LV KGL+RT
Sbjct: 382 LLLQTAYIQPPANQLAVDPPDIRPAFLHSVRTVAKETKSASRRYGIIQCDELVFKGLERT 441
Query: 211 ARHMVIPYMPMLVPPVNWTGYDKGGHLYLPSYVMRTHGARQQREAVKRAPREQLEPVFEA 32
ARHMVIPYMPMLVPPV WTGYDKGGHLYLPSYVMRTHGARQQREAVKRA R QL+PVFEA
Sbjct: 442 ARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSYVMRTHGARQQREAVKRASRNQLQPVFEA 501
Query: 31 LDALGNTKWR 2
LD LG+TKWR
Sbjct: 502 LDTLGSTKWR 511
>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Solanum lycopersicum]
Length = 1022
Score = 553 bits (1424), Expect = e-154
Identities = 303/524 (57%), Positives = 358/524 (68%), Gaps = 6/524 (1%)
Frame = -3
Query: 1555 MSCAKTP-SISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDS 1379
MSC KTP S++ F Q + + T P +S +MWRN +Q FS +
Sbjct: 1 MSCTKTPISLTIRFDQF----------TDLETNPYHISPIMWRNIVKQ-FSTRTPQKILL 49
Query: 1378 HSFSRACSFLGKTEHS---EKLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGY 1208
S + A S+LG HS +K RSF SCS+ GF E GF GE D+ + R
Sbjct: 50 TSKNHAYSYLGFGLHSVFKDKRTLRSFIPVSCSNSGFLEMGFQNLGEFLPGDEFLRRPLL 109
Query: 1207 GFVRNQVAGNIGICPKGYASVAEAV--SSTEVEDDISAGEEIQELLQQMNKEEKKEILNM 1034
+++QV+ N IC K YASVAEAV SST+ E+D+S E+QELL ++ KEEKK+
Sbjct: 110 CAMKSQVSNN-DICRKNYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKEEKKQFTFR 168
Query: 1033 RRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSL 854
RR + + G+ +KY L RRQVKIET+AWEQA KEY+ELL DMCEQKLAPNLPY+KSL
Sbjct: 169 RRKQRMLTSGIDRRKYPALMRRQVKIETQAWEQAAKEYRELLFDMCEQKLAPNLPYVKSL 228
Query: 853 FLGWFEPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGT 674
FLGWFEPLR+ IA+EQELC QGK+K AY+ YF LPA+MMAVITMHKLMGLLMTGGEHG
Sbjct: 229 FLGWFEPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMMAVITMHKLMGLLMTGGEHGN 288
Query: 673 ARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXX 494
RVV AA IGDAIEQEVRI +F ++++
Sbjct: 289 VRVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRNMEDGEHATLEQKKLHKKVTSLMK 348
Query: 493 XXXLRAVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAF 314
LRAV QIV+ QDD K WGQDA+AKVGSRLIE L +TA+IQ PADQ A PPD+RPAF
Sbjct: 349 KQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTAYIQSPADQLAVDPPDIRPAF 408
Query: 313 LHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGH 134
+H+ RT+ K K+ RRYGVI+CD LV KGL+RTARHMVIPYMPMLVPPV WTGYDKGGH
Sbjct: 409 IHSTRTLAKETKSASRRYGVIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGH 468
Query: 133 LYLPSYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
LYLPSYVMRTHGARQQREAVKR R QL+PVFEALD LG+TKWR
Sbjct: 469 LYLPSYVMRTHGARQQREAVKRTSRNQLQPVFEALDTLGSTKWR 512
>ref|XP_006338320.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Solanum tuberosum]
Length = 1019
Score = 551 bits (1420), Expect = e-154
Identities = 306/524 (58%), Positives = 361/524 (68%), Gaps = 6/524 (1%)
Frame = -3
Query: 1555 MSCAKTP-SISADFSQGIYHSSQYRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRFRPDS 1379
MSC KTP S++ F+Q + + T P S +MWRN +Q SR + +
Sbjct: 1 MSCTKTPISLTIKFNQF----------TNLETNPYQNSPIMWRNIVKQFSSRTPQ-KILL 49
Query: 1378 HSFSRACSFLGKTEHS---EKLKFRSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGY 1208
S +R SFLG + S +K RSF SCS+ GF E GF GE D+ + R
Sbjct: 50 TSKNRTYSFLGFGQDSVFKDKRILRSFIPVSCSNSGFLEMGFQNLGEF---DEFLRRPLL 106
Query: 1207 GFVRNQVAGNIGICPKGYASVAEAV--SSTEVEDDISAGEEIQELLQQMNKEEKKEILNM 1034
+++QV+ N IC K YASVAEAV SST+ E+D+S E+QELL ++ KEEKK+
Sbjct: 107 CAMKSQVSNN-DICRKSYASVAEAVAVSSTDAEEDVSVVGEVQELLTELKKEEKKQFTFR 165
Query: 1033 RRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSL 854
RRN + + G+ +KY L+RRQVKIET+AWE A KEY+ELL DMCEQKLAPNLPY+KSL
Sbjct: 166 RRNQRLLTSGIDRRKYPALKRRQVKIETQAWELAAKEYRELLFDMCEQKLAPNLPYVKSL 225
Query: 853 FLGWFEPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGT 674
FLGWFEPLR+ IA+EQELC QGK+K AY+ YF LPA+MMAVITMHKLMGLLMTGGEHG
Sbjct: 226 FLGWFEPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMMAVITMHKLMGLLMTGGEHGN 285
Query: 673 ARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXX 494
ARVV AA IGDAIEQEVRI +F ++++
Sbjct: 286 ARVVQAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRKMEDGEHATLEQKKLHKKVTSLMK 345
Query: 493 XXXLRAVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAF 314
LRAV QIV+ QDD K WGQDA+AKVGSRLIE L +TA+IQ PADQ A PPD+RPAF
Sbjct: 346 KQKLRAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTAYIQSPADQLAVDPPDIRPAF 405
Query: 313 LHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGH 134
+H+ RTV K K+ RRYGVI+CD LV KGL+RTARHMVIPYMPMLVPPV WTGYDKGGH
Sbjct: 406 IHSTRTVAKETKSASRRYGVIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGH 465
Query: 133 LYLPSYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTKWR 2
LYLPSYVMRTHGARQQREAVKRA R QL PVFEALD LG+TKWR
Sbjct: 466 LYLPSYVMRTHGARQQREAVKRASRNQLRPVFEALDTLGSTKWR 509
>ref|XP_011467851.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Fragaria vesca subsp. vesca]
Length = 999
Score = 533 bits (1373), Expect = e-148
Identities = 290/504 (57%), Positives = 346/504 (68%), Gaps = 8/504 (1%)
Frame = -3
Query: 1489 YRKPSIVRTIPSTVSTLMWRNFARQAFSRNLRF--RPDSHSFSRACSFLGKTEHSEKLKF 1316
+ PSI PS +ST ++R+ +QA SR R +P LG + S+ +
Sbjct: 19 FANPSISPQNPSMISTTVFRSLTKQAISRTQRLPLKP----------LLGFCQRSDFFQ- 67
Query: 1315 RSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGYGFVRNQVAGNIGICPKGYASVAEA 1136
+SSCS+ G C+ D + R +GF CPKGYASVAEA
Sbjct: 68 HPILVSSCSTL----VGSCQI-------DHMQRPSFGFS--------DFCPKGYASVAEA 108
Query: 1135 VSSTEV------EDDISAGEEIQELLQQMNKEEKKEILNMRRNHQKMVRGMGEKKYQVLR 974
+SST+ E+++ +E+QE+L++M KE+K++ R Q VRGMGE KY +LR
Sbjct: 109 ISSTDASSSTDAEEEVCVVDELQEILKEMKKEDKRQSAYRWRIEQARVRGMGEGKYLMLR 168
Query: 973 RRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIAKEQELCR 794
RRQ+KIETEAWE+A EY+ELLMDMCEQKLAPNLPYMKSLFLGWFEPL NAI KEQ+LCR
Sbjct: 169 RRQIKIETEAWERAADEYRELLMDMCEQKLAPNLPYMKSLFLGWFEPLCNAITKEQDLCR 228
Query: 793 QGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGTARVVPAACIIGDAIEQEVRI 614
QGKNK AY PY D+LPA+MMAVITMHKLMGLLMT GEHG+ RVV AAC IG+AIEQEV+I
Sbjct: 229 QGKNKTAYGPYMDKLPADMMAVITMHKLMGLLMT-GEHGSCRVVSAACTIGEAIEQEVKI 287
Query: 613 QRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXXXXXLRAVRQIVKRQDDLKSW 434
F M + + L+AVR IV+ DD K+W
Sbjct: 288 HNFLERTKKKKVGKDQETGESDAAMKENEKLNKKVTNLIEKKKLQAVRHIVRGHDDSKAW 347
Query: 433 GQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAFLHTFRTVVKNAKNTGRRYGV 254
Q+A+AKVGSR+IELLT+TA IQPPADQ D D+RPAF+HTF+T V NAKNT RRYGV
Sbjct: 348 SQEAKAKVGSRMIELLTQTAFIQPPADQLGDSLVDIRPAFVHTFKT-VSNAKNTSRRYGV 406
Query: 253 IECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGHLYLPSYVMRTHGARQQREAV 74
IEC+PLVLKGL+RTARHMVIPYMPMLVPP+NWTGYDKGGH YLPSYVMR HGA+QQREAV
Sbjct: 407 IECNPLVLKGLERTARHMVIPYMPMLVPPLNWTGYDKGGHFYLPSYVMRIHGAKQQREAV 466
Query: 73 KRAPREQLEPVFEALDALGNTKWR 2
K PREQLEPVF+ALD LGNT+WR
Sbjct: 467 KSTPREQLEPVFKALDTLGNTRWR 490
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 523 bits (1346), Expect = e-145
Identities = 277/482 (57%), Positives = 337/482 (69%), Gaps = 3/482 (0%)
Frame = -3
Query: 1438 MWRNFARQAFSRNLRFRPDSHSFSRA-CSFLGKTEHSEKLKFRSFELSSCSSYGFSETGF 1262
MWRN A+ A++R L+ SFS + C+ + K R+ E + G
Sbjct: 1 MWRNLAKHAYTRRLQLSSQHSSFSPSNCT----SRFYFPDKARALESQDHVNSLRPVAGL 56
Query: 1261 CRNGEISSHDDPVSRLGYGFVRNQVA--GNIGICPKGYASVAEAVSSTEVEDDISAGEEI 1088
R G +S D + R G+G + V G G KGYAS AEA++S E+D+S +E+
Sbjct: 57 RRIGVLSFQQDELGRPGFGVTKTPVNFFGLFGY-QKGYASAAEAIAS---EEDMSGVDEV 112
Query: 1087 QELLQQMNKEEKKEILNMRRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEYKELL 908
QEL++++NK +K E K++ G+ + K+ VLRRRQ+K+ETEAWE+A KEY+ELL
Sbjct: 113 QELVEEVNKGDKLE------KQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELL 166
Query: 907 MDMCEQKLAPNLPYMKSLFLGWFEPLRNAIAKEQELCRQGKNKPAYAPYFDQLPAEMMAV 728
DMCEQKLAPNLPY+KSLFLGWFEPLR+ IA EQ+LC+QGKN+ AYAPYFD LPA+MMAV
Sbjct: 167 SDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAV 226
Query: 727 ITMHKLMGLLMTGGEHGTARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXXXXXXX 548
ITMHKLMGLLMTG +G+ARVV AAC IG+AIE EVRIQRF
Sbjct: 227 ITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSN 286
Query: 547 XTMIKEQXXXXXXXXXXXXXXLRAVRQIVKRQDDLKSWGQDARAKVGSRLIELLTETAHI 368
+++ L+ VRQIVKRQDD K WGQDA KVGSRLIELL ETA+I
Sbjct: 287 PVTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYI 346
Query: 367 QPPADQSADGPPDVRPAFLHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRTARHMVIPY 188
QPPADQ DGPPD+RPAF+HT +TV+K + RRYGVIECDPLV KGL++TARHMVIPY
Sbjct: 347 QPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPY 406
Query: 187 MPMLVPPVNWTGYDKGGHLYLPSYVMRTHGARQQREAVKRAPREQLEPVFEALDALGNTK 8
MPMLVPP+NWTGYDKG +L+LPSYVMR HGARQQREA+KRAPR+ LEP FEAL+ LGNTK
Sbjct: 407 MPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTK 466
Query: 7 WR 2
WR
Sbjct: 467 WR 468
>ref|XP_008459412.1| PREDICTED: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial [Cucumis melo]
Length = 987
Score = 514 bits (1323), Expect = e-142
Identities = 274/488 (56%), Positives = 337/488 (69%), Gaps = 5/488 (1%)
Frame = -3
Query: 1450 VSTLMWRNFARQAFSRNLRFRPDSHSFSRACSFLGKTEHS---EKLKFRSFELSSCSSYG 1280
+ST MW+ A++ RN +F PD FSR LG+ S +KL + SS +G
Sbjct: 2 ISTSMWKTIAKRGICRNRQFHPDWRCFSRFNGVLGRPNESLFRDKLISGNLVPSSLPKFG 61
Query: 1279 FSETGFCRNGEISSHDDPVSRLGYGFVRNQVAGNIGICPKGYASVAEAVSSTEVEDDISA 1100
F + G RN +S D SR +G + ++ N G+CPKGY+SVAEAVSST+V++D S
Sbjct: 62 FFQMGVGRNQILSQEDYYRSRFCFGSMGARIGLN-GLCPKGYSSVAEAVSSTDVDEDASL 120
Query: 1099 GEEIQELLQQMNKEEKKEILNMRRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEY 920
E+QELLQ+M+KEE + K V+GM KY +LRRRQV +E EAWE+A+KEY
Sbjct: 121 DGEVQELLQEMSKEETR---------LKTVKGMPHSKYLMLRRRQVTVEAEAWEKAVKEY 171
Query: 919 KELLMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIAKEQELCRQGKNKPA-YAPYFDQLPA 743
KELL DMC+QKLAPNLPY+KSLFLGWFEP + AI KEQEL ++GK A YAPYF QLPA
Sbjct: 172 KELLEDMCKQKLAPNLPYVKSLFLGWFEPFQEAINKEQELIQKGKKPRAPYAPYFVQLPA 231
Query: 742 EMMAVITMHKLMGLLMTGGEHGTARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXX 563
+ M+VITMHKLMG+LM G EHG +VV AAC IGDAIEQEVRI +F
Sbjct: 232 DKMSVITMHKLMGMLMKGCEHGNIKVVVAACAIGDAIEQEVRIHKFLEKKKEKKHNKNNE 291
Query: 562 XXXXXXTMIKEQXXXXXXXXXXXXXXL-RAVRQIVKRQDDLKSWGQDARAKVGSRLIELL 386
+ +KEQ +AV QI K DD + WG++A+AKVG+RLIELL
Sbjct: 292 NNYQPDSQVKEQERLRKTVANLIKKKKHQAVGQIAKGTDDSRPWGREAKAKVGARLIELL 351
Query: 385 TETAHIQPPADQSADGPPDVRPAFLHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRTAR 206
+TA+IQPPADQ ADGPPD+RPAF H+ +TVV + N+ R GVIECDPLV+KGLDRTAR
Sbjct: 352 IQTAYIQPPADQLADGPPDIRPAFWHSLKTVVTD--NSVGRLGVIECDPLVIKGLDRTAR 409
Query: 205 HMVIPYMPMLVPPVNWTGYDKGGHLYLPSYVMRTHGARQQREAVKRAPREQLEPVFEALD 26
+VIPYMPML+PPV W GYDKGGH+ LPS+ MRTHGA+QQR+A KR P+EQL PVF+ALD
Sbjct: 410 QIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKEQLTPVFQALD 469
Query: 25 ALGNTKWR 2
LGNTKWR
Sbjct: 470 TLGNTKWR 477
>ref|XP_004141596.2| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Cucumis sativus] gi|700197359|gb|KGN52536.1|
hypothetical protein Csa_5G642180 [Cucumis sativus]
Length = 989
Score = 509 bits (1312), Expect = e-141
Identities = 272/488 (55%), Positives = 333/488 (68%), Gaps = 5/488 (1%)
Frame = -3
Query: 1450 VSTLMWRNFARQAFSRNLRFRPDSHSFSRACSFLGKTEHS---EKLKFRSFELSSCSSYG 1280
+ST MW+ A++ RN +F PD SR LG+ S +KL +F SS +G
Sbjct: 2 ISTSMWKTIAKRGICRNRQFHPDWRWLSRFNGVLGRPNESLFRDKLISGNFVPSSLPKFG 61
Query: 1279 FSETGFCRNGEISSHDDPVSRLGYGFVRNQVAGNIGICPKGYASVAEAVSSTEVEDDISA 1100
E G R+ +S D SR +G + ++ N G+CPKGY+SVAEAVSST+V++D S
Sbjct: 62 SFEMGVGRSEILSQEDYYRSRFCFGSMGARIGLN-GLCPKGYSSVAEAVSSTDVDEDASV 120
Query: 1099 GEEIQELLQQMNKEEKKEILNMRRNHQKMVRGMGEKKYQVLRRRQVKIETEAWEQALKEY 920
++QE +Q+M+KEEK+ K V+GMG+ KY +LRRRQV IE EAWE A KEY
Sbjct: 121 DGKVQESVQEMSKEEKR---------LKPVKGMGQWKYNMLRRRQVTIEAEAWENAAKEY 171
Query: 919 KELLMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIAKEQELCRQGKNKPA-YAPYFDQLPA 743
+ELL+DMC+QKLAPNLPY+KSLFLGWFEP ++AI KEQEL ++GK A YAPYF QLPA
Sbjct: 172 RELLVDMCKQKLAPNLPYVKSLFLGWFEPFQDAIIKEQELIQEGKRSRAPYAPYFLQLPA 231
Query: 742 EMMAVITMHKLMGLLMTGGEHGTARVVPAACIIGDAIEQEVRIQRFXXXXXXXXXXXXXX 563
+ M+VITMHKLMGLLM G EHG+ RVV AAC IGDAIEQEVRI +F
Sbjct: 232 DKMSVITMHKLMGLLMRGSEHGSVRVVQAACAIGDAIEQEVRIHKFLEKKKERTHNKDNE 291
Query: 562 XXXXXXTMIKEQXXXXXXXXXXXXXXLR-AVRQIVKRQDDLKSWGQDARAKVGSRLIELL 386
KEQ A QI KR DD + WG++ +AKVG+RLIELL
Sbjct: 292 NNDQPDIERKEQERLRKKVTNLIKKKKHLAAGQIAKRADDSRPWGRELKAKVGARLIELL 351
Query: 385 TETAHIQPPADQSADGPPDVRPAFLHTFRTVVKNAKNTGRRYGVIECDPLVLKGLDRTAR 206
+TA+IQPPADQ ADGPPD RPAF+H+ +T VK+ N R GVIECDPLV+KGLD TAR
Sbjct: 352 IQTAYIQPPADQLADGPPDPRPAFVHSLKTSVKDGTNFMGRLGVIECDPLVVKGLDWTAR 411
Query: 205 HMVIPYMPMLVPPVNWTGYDKGGHLYLPSYVMRTHGARQQREAVKRAPREQLEPVFEALD 26
+VIPYMPML+PPV W GYDKGGH+ LPS+ MRTHGA+QQR+A KR P++QL PVFEALD
Sbjct: 412 QIVIPYMPMLMPPVKWRGYDKGGHILLPSFAMRTHGAKQQRDAFKRTPKQQLTPVFEALD 471
Query: 25 ALGNTKWR 2
LGNTKWR
Sbjct: 472 TLGNTKWR 479
>ref|XP_008783046.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Phoenix dactylifera]
Length = 1038
Score = 507 bits (1306), Expect = e-140
Identities = 289/510 (56%), Positives = 347/510 (68%), Gaps = 18/510 (3%)
Frame = -3
Query: 1477 SIVRTIPSTVSTLMWRNFARQAFS--RNLRF--RPDS-HSFSRACSFLGKTEHSEKL-KF 1316
S++ IP MWRN AR+A S R L F RP S + SFLG ++ S +
Sbjct: 29 SVLTPIPKE----MWRNLARKASSSSRYLDFAGRPSSVPAIPSISSFLGSSQDSICCERS 84
Query: 1315 RSFELSSCSSYGFSETGFCRNGEISSHDDPVSRLGYGFVRNQVAGNIGICPKGYASVAEA 1136
R +L + S+ S TG NG+ S P R F +++G +G + +ASVAEA
Sbjct: 85 RILDLGTPFSHRSSNTGVGHNGDSS----PFIRCP-NFSIGRISGRLGDS-RFFASVAEA 138
Query: 1135 VSSTEVEDDISAGEEIQELLQQMNKEEKKE-------ILNMRRNHQ----KMVRGMGEKK 989
VSST+V++D S+ EEIQ +L++M+K + +E + +R Q +MV GMG K
Sbjct: 139 VSSTDVDEDTSSIEEIQGMLEEMSKIDVREGSKIGGNLEEVRPKQQLGQPRMVCGMGSGK 198
Query: 988 YQVLRRRQVKIETEAWEQALKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRNAIAKE 809
Y +LRRRQ++IETEAWEQA KEYKELL DMCEQKLAPNLPY+KSLFLGWFEPLR+ IA E
Sbjct: 199 YAILRRRQIRIETEAWEQAAKEYKELLTDMCEQKLAPNLPYVKSLFLGWFEPLRDQIAAE 258
Query: 808 QELCRQGKNKPAYAPYFDQLPAEMMAVITMHKLMGLLMTGGEHGTARVVPAACIIGDAIE 629
QE CR + + ++ PYF QLPA+MMAVITMHKLM LLMTG G RVV AAC IG+AIE
Sbjct: 259 QEQCRDPRTRVSHGPYFYQLPADMMAVITMHKLMSLLMTGNGDGGIRVVQAACQIGEAIE 318
Query: 628 QEVRIQRFXXXXXXXXXXXXXXXXXXXXTMIKEQXXXXXXXXXXXXXXL-RAVRQIVKRQ 452
EVRI RF T+ KEQ VR+IVK Q
Sbjct: 319 HEVRIHRFLEKTRKKTDKDKKNEDVEGATLTKEQEFLRKKVTNLMKKQKVHQVRKIVKGQ 378
Query: 451 DDLKSWGQDARAKVGSRLIELLTETAHIQPPADQSADGPPDVRPAFLHTFRTVVKNAKNT 272
DD K WGQDA+AKVGSRLIELL ETA+IQPP QSADGPPD+RPAF H+ RTV K +
Sbjct: 379 DDSKPWGQDAQAKVGSRLIELLMETAYIQPPVSQSADGPPDIRPAFRHSLRTVTKEQQKH 438
Query: 271 GRRYGVIECDPLVLKGLDRTARHMVIPYMPMLVPPVNWTGYDKGGHLYLPSYVMRTHGAR 92
RRYGVIECDPLV +GLDRTARHMVIPYMPMLVPPVNWTGY+KGGHL+LPSY+MRTHGAR
Sbjct: 439 SRRYGVIECDPLVRQGLDRTARHMVIPYMPMLVPPVNWTGYEKGGHLFLPSYIMRTHGAR 498
Query: 91 QQREAVKRAPREQLEPVFEALDALGNTKWR 2
QQREAV+RAPR++++ VFEALD LG+TKWR
Sbjct: 499 QQREAVRRAPRKEMQAVFEALDTLGSTKWR 528