BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00015287
         (1717 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267010.1| PREDICTED: RNA pseudouridine synthase 3, mit...   718   0.0  
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              712   0.0  
ref|XP_007023655.1| Pseudouridine synthase family protein [Theob...   709   0.0  
gb|KGN63094.1| hypothetical protein Csa_2G402020 [Cucumis sativus]    708   0.0  
ref|XP_010263262.1| PREDICTED: RNA pseudouridine synthase 3, mit...   707   0.0  
ref|XP_010094671.1| RNA pseudourine synthase 3 [Morus notabilis]...   704   0.0  
ref|XP_010111123.1| RNA pseudourine synthase 3 [Morus notabilis]...   703   0.0  
ref|XP_011649894.1| PREDICTED: RNA pseudouridine synthase 3, mit...   699   0.0  
ref|XP_004515176.1| PREDICTED: RNA pseudouridine synthase 3, mit...   699   0.0  
ref|XP_014502865.1| PREDICTED: RNA pseudouridine synthase 3, mit...   697   0.0  
ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phas...   697   0.0  
gb|KOM48901.1| hypothetical protein LR48_Vigan07g260500 [Vigna a...   696   0.0  
ref|XP_008441208.1| PREDICTED: RNA pseudouridine synthase 3, mit...   695   0.0  
ref|XP_013448024.1| RNA pseudouridine synthase [Medicago truncat...   695   0.0  
ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prun...   695   0.0  
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   693   0.0  
ref|XP_008239134.1| PREDICTED: RNA pseudouridine synthase 3, mit...   691   0.0  
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   691   0.0  
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   689   0.0  
ref|XP_012444478.1| PREDICTED: RNA pseudouridine synthase 3, mit...   688   0.0  

>ref|XP_002267010.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Vitis
            vinifera]
          Length = 479

 Score =  718 bits (1853), Expect = 0.0
 Identities = 346/464 (74%), Positives = 406/464 (87%), Gaps = 2/464 (0%)
 Frame = -1

Query: 1579 IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVP 1400
            +R YSRI+PP P +  PVIRVSNNVA+LG PKEGPKPRQLLS          GK++V V 
Sbjct: 16   VRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSLVNVS 75

Query: 1399 GRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMREVKPS 1220
            G   HVTAISW+KYYF  +   V+QSHFNKGLVH E SN+ +S +EKEGQ+KP+R++KP+
Sbjct: 76   GLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKPN 135

Query: 1219 EVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIVLNKPP 1040
            EVM+ G R++VPVSVAE+RIS+RFDTIPSGTL+PNADEI+YLQRLV Y+D AI+VLNKPP
Sbjct: 136  EVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILVLNKPP 195

Query: 1039 RLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNWLF 860
            ++P+KG+LP+HNSMDALAAAAL++ Y EGPKLVHRLDRESSGL++MGRTKES+ HL+WLF
Sbjct: 196  KVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLF 255

Query: 859  SNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVILAH 680
            S+  +  +  KAW+DACEAT Q+YWALVIGSPK+KEG+I APLSKVLLDDGKTERVILA+
Sbjct: 256  SDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILAN 315

Query: 679  QSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWF 500
            QSG E SQ+AITEYRVLGPMINGCSW+EL P TSRKHQLRVHCAEALGTPIVGDYKYGWF
Sbjct: 316  QSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWF 375

Query: 499  VHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLK 320
            VHRRWKQMPRVD+EPTTGKPYK+RRP+GLDVQKGSVLSKVPLLHLHCREL+LPNIAKFL 
Sbjct: 376  VHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLP 435

Query: 319  VFN--GKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            + +   K++ Q  ++SL+ D+LRFVASMP+HMKISWNLMSSYLV
Sbjct: 436  ILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 479


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  712 bits (1838), Expect = 0.0
 Identities = 345/466 (74%), Positives = 407/466 (87%), Gaps = 4/466 (0%)
 Frame = -1

Query: 1579 IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVP 1400
            +R YSRI+PP P +  PVIRVSNNVA+LG PKEGPKPRQLLS          GK++V V 
Sbjct: 16   VRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFPAHPLPGKSLVNVS 75

Query: 1399 GRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMREVKPS 1220
            G   HVTAISW+KYYF  +   V+QSHFNKGLVH E SN+ +S +EKEGQ+KP+R++KP+
Sbjct: 76   GLPTHVTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKPN 135

Query: 1219 EVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRL--VKYRDWAIIVLNK 1046
            EVM+ G R++VPVSVAE+RIS+RFDTIPSGTL+PNADEI+YLQRL  +K++D AI+VLNK
Sbjct: 136  EVMEAGTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAILVLNK 195

Query: 1045 PPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNW 866
            PP++P+KG+LP+HNSMDALAAAAL++ Y EGPKLVHRLDRESSGL++MGRTKES+ HL+W
Sbjct: 196  PPKVPLKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHW 255

Query: 865  LFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVIL 686
            LFS+  +  +  KAW+DACEAT Q+YWALVIGSPK+KEG+I APLSKVLLDDGKTERVIL
Sbjct: 256  LFSDINKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVIL 315

Query: 685  AHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYG 506
            A+QSG E SQ+AITEYRVLGPMINGCSW+EL P TSRKHQLRVHCAEALGTPIVGDYKYG
Sbjct: 316  ANQSGLEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYG 375

Query: 505  WFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKF 326
            WFVHRRWKQMPRVD+EPTTGKPYK+RRP+GLDVQKGSVLSKVPLLHLHCREL+LPNIAKF
Sbjct: 376  WFVHRRWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKF 435

Query: 325  LKVFN--GKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            L + +   K++ Q  ++SL+ D+LRFVASMP+HMKISWNLMSSYLV
Sbjct: 436  LPILDPKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 481


>ref|XP_007023655.1| Pseudouridine synthase family protein [Theobroma cacao]
            gi|508779021|gb|EOY26277.1| Pseudouridine synthase family
            protein [Theobroma cacao]
          Length = 471

 Score =  709 bits (1830), Expect = 0.0
 Identities = 343/462 (74%), Positives = 393/462 (85%)
 Frame = -1

Query: 1579 IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVP 1400
            +R YSR++PPPP    PV+RVSN+VA LG PK+GPKPRQLLS          GKN    P
Sbjct: 14   VRHYSRVAPPPPAYADPVLRVSNSVAYLGAPKQGPKPRQLLSLPPFPGYPLPGKN----P 69

Query: 1399 GRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMREVKPS 1220
            G +  VTAISW+KYYF  + D  IQSHFNKGLV  E SN G++ +E++G MKP+R++K +
Sbjct: 70   GGTARVTAISWLKYYFDEIPDSAIQSHFNKGLVQMESSNAGDTCIERDGLMKPLRKIKHN 129

Query: 1219 EVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIVLNKPP 1040
            EVM+VG RV VPVS+AE+RIS+RFD IPSGTLYPN DEI YLQRLVKY+D+AI+VLNKPP
Sbjct: 130  EVMEVGTRVWVPVSIAETRISKRFDCIPSGTLYPNKDEIDYLQRLVKYKDYAILVLNKPP 189

Query: 1039 RLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNWLF 860
            +LPVKG LP+HNSMDALAAAALSY ++EGPKLVHRLDRESSGL++MGRTKES+ HL+WLF
Sbjct: 190  KLPVKGSLPVHNSMDALAAAALSYDHDEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLF 249

Query: 859  SNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVILAH 680
            ++   V +  KAWNDAC+  YQ++WALVIG+PKEKEGLICAPLSK+LLDDGKTERVILA 
Sbjct: 250  NDLNTVKSSCKAWNDACDVKYQRFWALVIGTPKEKEGLICAPLSKILLDDGKTERVILAQ 309

Query: 679  QSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWF 500
              G E SQ+AITEYRVLGPMINGCSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGWF
Sbjct: 310  NVGLEASQEAITEYRVLGPMINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWF 369

Query: 499  VHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLK 320
            VHRRWKQMPRVDIEPTTGKPYKLRRP+GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFL 
Sbjct: 370  VHRRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLP 429

Query: 319  VFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            V N  +E     +S++ D+LRFVA+MP HMKISWNLMSSYLV
Sbjct: 430  VLNKNTETLPPALSMKPDLLRFVATMPKHMKISWNLMSSYLV 471


>gb|KGN63094.1| hypothetical protein Csa_2G402020 [Cucumis sativus]
          Length = 543

 Score =  708 bits (1828), Expect = 0.0
 Identities = 341/481 (70%), Positives = 398/481 (82%)
 Frame = -1

Query: 1636 FWFAYTMRKTIPKRPIWLSIRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLL 1457
            FW++Y + +   +R + L+ R YSRISPPPP   KP+IRVSNN+A+LG PKEGPK RQLL
Sbjct: 66   FWYSYKIMQRSMRRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLL 125

Query: 1456 SXXXXXXXXXXGKNMVTVPGRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMG 1277
            S          GKN V V G S HVTAI WVKYYF  ++D  IQSHF KGLV  EC  +G
Sbjct: 126  SLPPFPGYPLPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLG 185

Query: 1276 ESIVEKEGQMKPMREVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKY 1097
               ++++G +KPMR+++  E+M+ G R+H+PVSVAE +++RRFDTIPSGTLYPNADEIKY
Sbjct: 186  G--LDEKGNLKPMRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKY 243

Query: 1096 LQRLVKYRDWAIIVLNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESS 917
            LQRLVKY+D AIIVLNKPP+LPVKG LP+HNSMDALA AALSY Y++GPKLVHRLDRESS
Sbjct: 244  LQRLVKYKDSAIIVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESS 303

Query: 916  GLIIMGRTKESIDHLNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICA 737
            G+++MGRTKES+DHL WLFSN +      KAW +AC ATYQKYWALVIG P+E+EG+I A
Sbjct: 304  GILLMGRTKESVDHLQWLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGVISA 363

Query: 736  PLSKVLLDDGKTERVILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRV 557
            PLSKVLLDDGKTERV+LA+++  E SQ+AITEYRVLGP INGCSW+EL P TSRKHQLR+
Sbjct: 364  PLSKVLLDDGKTERVVLANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRI 423

Query: 556  HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVP 377
            HCAEALGTPIVGDYKYGWFVHRRWKQMPRVD+EP +G+PYKLRRP+GLDVQKGSVLSKVP
Sbjct: 424  HCAEALGTPIVGDYKYGWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVP 483

Query: 376  LLHLHCRELVLPNIAKFLKVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYL 197
            LLHLHCRELVLPNIAKFL VF GK   +    S + D+LRFVA MPSHM+ISWNLMSSYL
Sbjct: 484  LLHLHCRELVLPNIAKFLNVFYGKGPNRPVS-SFDSDLLRFVARMPSHMRISWNLMSSYL 542

Query: 196  V 194
            V
Sbjct: 543  V 543


>ref|XP_010263262.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Nelumbo
            nucifera]
          Length = 474

 Score =  707 bits (1824), Expect = 0.0
 Identities = 344/475 (72%), Positives = 400/475 (84%)
 Frame = -1

Query: 1618 MRKTIPKRPIWLSIRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXX 1439
            MRK    R I L++R YSR+SPP P     VIRVSNN+ARLGCPKE PKPRQLLS     
Sbjct: 1    MRKYHVFRVILLTVRHYSRVSPPSPARATSVIRVSNNIARLGCPKEDPKPRQLLSLPPFP 60

Query: 1438 XXXXXGKNMVTVPGRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEK 1259
                 GK+ V+V G+S HVTAISWVKYYF  +   VIQSHFNKGLV   C N G+ ++E+
Sbjct: 61   GHPLPGKSSVSVAGQSAHVTAISWVKYYFDDIPGPVIQSHFNKGLVKMACPNPGDLLMEE 120

Query: 1258 EGQMKPMREVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVK 1079
            +GQM+ ++++ P+EVM+VG R++VPVSV E++IS+RFDTIPSGTLYPNADEI+YLQRLV 
Sbjct: 121  QGQMQSLKKISPNEVMEVGSRIYVPVSVIETKISKRFDTIPSGTLYPNADEIEYLQRLVM 180

Query: 1078 YRDWAIIVLNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMG 899
            Y+D AIIVLNKPP+LPVKG+LP+HNSMDALA AALSYGY +GPKLVHRLDRESSGL++MG
Sbjct: 181  YKDSAIIVLNKPPKLPVKGNLPVHNSMDALAEAALSYGYEQGPKLVHRLDRESSGLLLMG 240

Query: 898  RTKESIDHLNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVL 719
            RTKESI  L+WLFS+  +  +P K WNDACE T Q+YWALVIGSP+EK+G ICAPLSKVL
Sbjct: 241  RTKESIARLHWLFSDVNKAKSPLKTWNDACETTTQRYWALVIGSPREKQGRICAPLSKVL 300

Query: 718  LDDGKTERVILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEAL 539
            L+DGKTERVILA+ SG E SQ+AIT++RVLGPMINGC+W+EL P T RKHQLRVHCAEAL
Sbjct: 301  LNDGKTERVILANPSGVEASQEAITDFRVLGPMINGCTWIELCPLTGRKHQLRVHCAEAL 360

Query: 538  GTPIVGDYKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHC 359
            GTPIVGDYKYGW+VH++WKQMPRVDIEPTTGKPYKLRRP+GLDVQKGSVLSKVPLLHLHC
Sbjct: 361  GTPIVGDYKYGWYVHKKWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHC 420

Query: 358  RELVLPNIAKFLKVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            REL+LPNIAKFL + + KS+    + S   DVLRFVA MPSHMKISWNLMSSYLV
Sbjct: 421  RELILPNIAKFLDILDRKSQ-NLPKFSSRPDVLRFVAPMPSHMKISWNLMSSYLV 474


>ref|XP_010094671.1| RNA pseudourine synthase 3 [Morus notabilis]
            gi|587955350|gb|EXC41018.1| RNA pseudourine synthase 3
            [Morus notabilis]
          Length = 449

 Score =  704 bits (1817), Expect = 0.0
 Identities = 353/462 (76%), Positives = 390/462 (84%)
 Frame = -1

Query: 1579 IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVP 1400
            IR+YSRI PP      PVIRVSNNVA+LG PKEGPKPRQLLS          GKN     
Sbjct: 6    IRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGLPLPGKN----- 60

Query: 1399 GRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMREVKPS 1220
              S  VTAISWVKYYF  V D+VIQSHFNK LV  ECSN G+ + E++ +MKPMR++KP+
Sbjct: 61   --SERVTAISWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMRKIKPN 118

Query: 1219 EVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIVLNKPP 1040
            EVM  G R++VPVSVAESRIS+RFD IPSGTL+PNADEI YLQRL    D AI+VLNKPP
Sbjct: 119  EVMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILVLNKPP 174

Query: 1039 RLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNWLF 860
            RLPVKGHLP+HNSMDALAAAALSY Y+EGPKLVHRLDR+SSGL++MGRTKESI HL WLF
Sbjct: 175  RLPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISHLEWLF 234

Query: 859  SNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVILAH 680
            SN K       AWNDACEA YQKYWALVIGSPKEKEG+ICAPLSKVLL+DGKTERVILAH
Sbjct: 235  SNIK-------AWNDACEAKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILAH 287

Query: 679  QSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWF 500
            Q+GF+ SQ+AITEYRVLGPMINGCSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGW 
Sbjct: 288  QTGFQASQEAITEYRVLGPMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWL 347

Query: 499  VHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLK 320
            VH+RWKQMP+V+IEPTTGKPYKLRRP+GLDVQKGSV+SKVPLLHL CRELVLPNIAKFL+
Sbjct: 348  VHKRWKQMPQVNIEPTTGKPYKLRRPEGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFLR 407

Query: 319  VFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            VF+ KSE Q   +  + D+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 408  VFDRKSENQDPALESKPDLLRFVARMPSHMKISWNLMSSYLV 449


>ref|XP_010111123.1| RNA pseudourine synthase 3 [Morus notabilis]
            gi|587974160|gb|EXC58952.1| RNA pseudourine synthase 3
            [Morus notabilis]
          Length = 449

 Score =  703 bits (1814), Expect = 0.0
 Identities = 351/463 (75%), Positives = 393/463 (84%), Gaps = 1/463 (0%)
 Frame = -1

Query: 1579 IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVP 1400
            IR+YSRI PP      PVIRVSNNVA+LG PKEGPKPRQLLS              + +P
Sbjct: 6    IRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPG--------LPLP 57

Query: 1399 GR-SPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMREVKP 1223
            G+ S  VTAI+WVKYYF  V D+VIQSHFNK LV  ECSN G+ + E++ +MKPMR++KP
Sbjct: 58   GKKSERVTAITWVKYYFEEVHDNVIQSHFNKSLVQMECSNFGDPLAERDRKMKPMRKIKP 117

Query: 1222 SEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIVLNKP 1043
            +EVM  G R++VPVSVAESRIS+RFD IPSGTL+PNADEI YLQRL    D AI+VLNKP
Sbjct: 118  NEVMVEGTRIYVPVSVAESRISKRFDVIPSGTLHPNADEIAYLQRL----DSAILVLNKP 173

Query: 1042 PRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNWL 863
            PRLPVKGHLP+HNSMDALAAAALSY Y+EGPKLVHRLDR+SSGL++MGRTKESI HL WL
Sbjct: 174  PRLPVKGHLPVHNSMDALAAAALSYDYSEGPKLVHRLDRDSSGLLLMGRTKESISHLEWL 233

Query: 862  FSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVILA 683
            FSN K       AWNDACEA YQKYWALVIGSPKEKEG+ICAPLSKVLL+DGKTERVILA
Sbjct: 234  FSNIK-------AWNDACEAKYQKYWALVIGSPKEKEGIICAPLSKVLLNDGKTERVILA 286

Query: 682  HQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYGW 503
            HQ+GF+ SQ+AITEYRVLGPMINGCSW+ELRP TSRKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 287  HQTGFQASQEAITEYRVLGPMINGCSWLELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW 346

Query: 502  FVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFL 323
            FVH+RWKQMP+V+IEPTTGKPYKLRRP+GLDVQKGSV+SKVPLLHL CRELVLPNIAKFL
Sbjct: 347  FVHKRWKQMPQVNIEPTTGKPYKLRRPEGLDVQKGSVMSKVPLLHLQCRELVLPNIAKFL 406

Query: 322  KVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            +VF+ KS+ Q   +  + D+LRFVA MPSHMKISWNLMSSYLV
Sbjct: 407  RVFDRKSQNQDPALESKPDLLRFVARMPSHMKISWNLMSSYLV 449


>ref|XP_011649894.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial isoform X1
            [Cucumis sativus]
          Length = 471

 Score =  699 bits (1805), Expect = 0.0
 Identities = 338/469 (72%), Positives = 391/469 (83%)
 Frame = -1

Query: 1600 KRPIWLSIRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXG 1421
            +R + L+ R YSRISPPPP   KP+IRVSNN+A+LG PKEGPK RQLLS          G
Sbjct: 6    RRHLLLATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPGYPLPG 65

Query: 1420 KNMVTVPGRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKP 1241
            KN V V G S HVTAI WVKYYF  ++D  IQSHF KGLV  EC  +G   ++++G +KP
Sbjct: 66   KNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHFRKGLVQVECPQLGG--LDEKGNLKP 123

Query: 1240 MREVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAI 1061
            MR+++  E+M+ G R+H+PVSVAE +++RRFDTIPSGTLYPNADEIKYLQRLVKY+D AI
Sbjct: 124  MRKIRSGEIMETGARIHLPVSVAEMKVARRFDTIPSGTLYPNADEIKYLQRLVKYKDSAI 183

Query: 1060 IVLNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESI 881
            IVLNKPP+LPVKG LP+HNSMDALA AALSY Y++GPKLVHRLDRESSG+++MGRTKES+
Sbjct: 184  IVLNKPPKLPVKGTLPVHNSMDALADAALSYDYDDGPKLVHRLDRESSGILLMGRTKESV 243

Query: 880  DHLNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKT 701
            DHL WLFSN +      KAW +AC ATYQKYWALVIG P+E+EG+I APLSKVLLDDGKT
Sbjct: 244  DHLQWLFSNIRNAKFTCKAWEEACNATYQKYWALVIGCPREREGVISAPLSKVLLDDGKT 303

Query: 700  ERVILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVG 521
            ERV+LA+++  E SQ+AITEYRVLGP INGCSW+EL P TSRKHQLR+HCAEALGTPIVG
Sbjct: 304  ERVVLANKASIEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEALGTPIVG 363

Query: 520  DYKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLP 341
            DYKYGWFVHRRWKQMPRVD+EP +G+PYKLRRP+GLDVQKGSVLSKVPLLHLHCRELVLP
Sbjct: 364  DYKYGWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLP 423

Query: 340  NIAKFLKVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            NIAKFL VF GK   +    S + D+LRFVA MPSHM+ISWNLMSSYLV
Sbjct: 424  NIAKFLNVFYGKGPNRPVS-SFDSDLLRFVARMPSHMRISWNLMSSYLV 471


>ref|XP_004515176.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Cicer
            arietinum]
          Length = 479

 Score =  699 bits (1804), Expect = 0.0
 Identities = 339/467 (72%), Positives = 391/467 (83%), Gaps = 2/467 (0%)
 Frame = -1

Query: 1588 WLS--IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKN 1415
            WLS  +R YSRI PP PV+V+ VIRVSNN+ARL  PKEGPKPRQLLS          GKN
Sbjct: 13   WLSSIVRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFPCHPLPGKN 72

Query: 1414 MVTVPGRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMR 1235
              + PG+  HVTA++W+KYYF G    VI+SHF +GLV  E   + +S  +K+  MKPMR
Sbjct: 73   STSAPGKRDHVTAVNWIKYYFKGTSGSVIESHFREGLVQMEDLIVDDSFKQKKELMKPMR 132

Query: 1234 EVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIV 1055
            +++P+EVMK G RVHV VS+AE++IS+RFD IPSGTL PNADEIKYLQRLV Y+D AII+
Sbjct: 133  KIRPNEVMKPGARVHVSVSMAETKISKRFDPIPSGTLCPNADEIKYLQRLVIYKDSAIIM 192

Query: 1054 LNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDH 875
            LNKPP+LPVKG+LP+HNSMDALAAAALSY Y++GPKLVHRLDRESSG++++GRTK+S+ H
Sbjct: 193  LNKPPKLPVKGNLPVHNSMDALAAAALSYDYDDGPKLVHRLDRESSGILLLGRTKDSVSH 252

Query: 874  LNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTER 695
            L WLFSN     +  KAWNDACE+TYQ+YWALVIG+PKEKEG+I APLSKVLL+DGKTER
Sbjct: 253  LQWLFSNINNTKSSCKAWNDACESTYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTER 312

Query: 694  VILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDY 515
            VILAH+S  EP Q+A+TEYRVLGP INGCSWVELRP T RKHQLRVHCAEALGTPIVGDY
Sbjct: 313  VILAHESSIEPHQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDY 372

Query: 514  KYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNI 335
            KYGWFVH RWKQMPRVDIEPTTGKPYKLRRP+GLDVQKGSVLSKVPLLHLHCREL LPNI
Sbjct: 373  KYGWFVHSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELALPNI 432

Query: 334  AKFLKVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            AKFL V    S+     +SL+ DVLRFVA+MP+HM+ISWNLMSSYLV
Sbjct: 433  AKFLNVLEKSSQQLDPSLSLQPDVLRFVATMPNHMRISWNLMSSYLV 479


>ref|XP_014502865.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Vigna radiata
            var. radiata]
          Length = 494

 Score =  697 bits (1798), Expect = 0.0
 Identities = 337/462 (72%), Positives = 386/462 (83%)
 Frame = -1

Query: 1579 IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVP 1400
            +R YSRI PP PV+VKPVIRVSNN+ARL  PKEGPKPRQLLS           K+  + P
Sbjct: 33   VRHYSRIQPPRPVSVKPVIRVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPAKSSNSGP 92

Query: 1399 GRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMREVKPS 1220
            G+  +VTA++W+KYYF G    VI+SHF +GLV  E     +S   KE  MK MR+++P+
Sbjct: 93   GQRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEGLVAADSYTRKETLMKSMRKIRPN 152

Query: 1219 EVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIVLNKPP 1040
            EVM+ G RVHVPVS+AE+RIS+R+D IP GTLYPNADEIKYLQRLV Y+D AIIVLNKPP
Sbjct: 153  EVMEHGARVHVPVSIAETRISKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPP 212

Query: 1039 RLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNWLF 860
            +LPVKG LP+HNSMDALAAAALSY Y+EGPKLVHRLDRE+SG++++GRTK+S  HL WLF
Sbjct: 213  KLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQWLF 272

Query: 859  SNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVILAH 680
            +N     +  KAWNDACEATYQ+YWALVIG+PKEKEG+I APLSKVLL+DGKTER+ILAH
Sbjct: 273  TNINNAKSSCKAWNDACEATYQRYWALVIGTPKEKEGVIHAPLSKVLLNDGKTERIILAH 332

Query: 679  QSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWF 500
             S  EP Q+A+TEYRVLGP INGCSWVELRP T RKHQLRVHCAEALGTPIVGDYKYGWF
Sbjct: 333  HSSVEPRQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWF 392

Query: 499  VHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLK 320
            VH RWKQMPR+DIEPTTGKPYKLRRP+GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFL+
Sbjct: 393  VHSRWKQMPRIDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLQ 452

Query: 319  VFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            V N  SE   + +S + DVLRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 453  VLNNSSEELHSSLSQQPDVLRFVATMPSHMRISWNLMSSYLV 494


>ref|XP_007160970.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
            gi|561034434|gb|ESW32964.1| hypothetical protein
            PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  697 bits (1798), Expect = 0.0
 Identities = 334/462 (72%), Positives = 388/462 (83%)
 Frame = -1

Query: 1579 IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVP 1400
            +R YSRI PP PV+V+PVIRVSNNVARL  PKEGPKPRQLLS           K+  + P
Sbjct: 19   VRHYSRIQPPRPVSVEPVIRVSNNVARLDAPKEGPKPRQLLSLPPFPGHPLPAKSSTSDP 78

Query: 1399 GRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMREVKPS 1220
            G+  +VTA++W+KYYF G    VI+SHF +GLV  E     +S  +KE  MKPMR+++P+
Sbjct: 79   GQRDYVTAVNWIKYYFKGAWGSVIESHFREGLVQMEDEVTADSYTQKENLMKPMRKIRPN 138

Query: 1219 EVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIVLNKPP 1040
            EVMK G RVHVPVS+AE+R+S+R+D IP GTLYPNADEIKYLQRLV Y+D AIIVLNKPP
Sbjct: 139  EVMKHGARVHVPVSIAETRVSKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPP 198

Query: 1039 RLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNWLF 860
            +LPVKG+LP+HNSMDALAAAALSY Y+EGPKLVHRLDRE+SG++++GRTK+S  HL WLF
Sbjct: 199  KLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQWLF 258

Query: 859  SNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVILAH 680
            +N     +  KAWNDACEATYQ+YWALVIG+PKEKEG+I APLSKVLL+DGKTER+ILA+
Sbjct: 259  TNINNAKSSCKAWNDACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAN 318

Query: 679  QSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWF 500
             S  EP Q+A+TE+RVLGP INGCSWVELRP T RKHQLRVHCAEALGTPIVGDYKYGWF
Sbjct: 319  HSSVEPRQEAVTEFRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWF 378

Query: 499  VHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLK 320
            VH RWKQMPR+DIEPTTGKPYKLRRP+GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFL 
Sbjct: 379  VHSRWKQMPRIDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLH 438

Query: 319  VFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            V N  SE   + ++ + +VLRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 439  VLNNSSEELHSSLNQQPEVLRFVATMPSHMRISWNLMSSYLV 480


>gb|KOM48901.1| hypothetical protein LR48_Vigan07g260500 [Vigna angularis]
          Length = 494

 Score =  696 bits (1795), Expect = 0.0
 Identities = 335/462 (72%), Positives = 387/462 (83%)
 Frame = -1

Query: 1579 IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVP 1400
            +R YSRI PP PV+VKPVIRVSNN+ARL  PK+GPKPRQLLS           K+  + P
Sbjct: 33   VRHYSRIQPPRPVSVKPVIRVSNNIARLDAPKKGPKPRQLLSLPPFPGHPLPAKSSNSGP 92

Query: 1399 GRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMREVKPS 1220
            G+  +VTA++W+KYYF G+   VI+SHF +GLV  E     +S   K+  MK MR+++P+
Sbjct: 93   GQRDYVTAVNWIKYYFKGIWGSVIESHFREGLVQMEGLVAADSYTRKDTLMKSMRKIRPN 152

Query: 1219 EVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIVLNKPP 1040
            EVM+ G RVHVPVS+AE+RIS+R+D IP GTLYPNADEIKYLQRLV Y+D AIIVLNKPP
Sbjct: 153  EVMEHGARVHVPVSIAETRISKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPP 212

Query: 1039 RLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNWLF 860
            +LPVKG LP+HNSMDALAAAALSY Y+EGPKLVHRLDRE+SG++++GRTK+S  HL WLF
Sbjct: 213  KLPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQWLF 272

Query: 859  SNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVILAH 680
            +N     +  KAWNDACEATYQ+YWALVIG+PKEKEG+I APLSKVLL+DGKTER+ILAH
Sbjct: 273  TNINNAKSSCKAWNDACEATYQRYWALVIGTPKEKEGVIHAPLSKVLLNDGKTERIILAH 332

Query: 679  QSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWF 500
             S  EP Q+A+TEYRVLGP INGCSWVELRP T RKHQLRVHCAEALGTPIVGDYKYGWF
Sbjct: 333  HSSVEPRQEAVTEYRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWF 392

Query: 499  VHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLK 320
            VH RWKQMPR+DIEPTTGKPYKLRRP+GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFL+
Sbjct: 393  VHSRWKQMPRIDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLQ 452

Query: 319  VFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            V N  SE   + +S + DVLRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 453  VLNNSSEELQSSLSQQPDVLRFVATMPSHMRISWNLMSSYLV 494


>ref|XP_008441208.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Cucumis melo]
          Length = 473

 Score =  695 bits (1794), Expect = 0.0
 Identities = 342/476 (71%), Positives = 393/476 (82%), Gaps = 1/476 (0%)
 Frame = -1

Query: 1618 MRKTIPKRPIWLSIRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXX 1439
            M+++I +R + L+ R YSRISPPPP   KP+IRVSNN+A+LG PKEGPK RQLLS     
Sbjct: 1    MQRSI-RRHLLLATRYYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFP 59

Query: 1438 XXXXXGKNMVTVPGRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEK 1259
                 GKN V V G S HVTAI WVKYYF  ++D  IQS F KGLV  EC  +G    ++
Sbjct: 60   GHPLPGKNQVGVSGESTHVTAIRWVKYYFDEIQDSQIQSLFRKGLVQVECPQLGG--FDE 117

Query: 1258 EGQMKPMREVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVK 1079
             G +KPMR+++  E+M++G R+H+PVSVAE ++SRRFDTIPSGTLYPNADEIKYLQRLVK
Sbjct: 118  NGNLKPMRKIRSGEIMEIGARIHLPVSVAEMKVSRRFDTIPSGTLYPNADEIKYLQRLVK 177

Query: 1078 YRDWAIIVLNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMG 899
            Y+D AIIVLNKPP+LPVKG LP+HNSMDALAAAALSY Y+ GPKLVHRLDRESSG+++MG
Sbjct: 178  YKDSAIIVLNKPPKLPVKGTLPVHNSMDALAAAALSYDYDYGPKLVHRLDRESSGILLMG 237

Query: 898  RTKESIDHLNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVL 719
            RTKES+DHL WLFSN +      KAW +AC ATYQKYWALVIG P+E+EGLI APLSKVL
Sbjct: 238  RTKESVDHLQWLFSNIRNGKFTCKAWEEACNATYQKYWALVIGRPREREGLISAPLSKVL 297

Query: 718  LDDGKTERVILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEAL 539
            LDDGKTERV+LA+++  E SQ+AITEYRVLGP INGCSW+EL P TSRKHQLR+HCAEAL
Sbjct: 298  LDDGKTERVVLANKASLEASQEAITEYRVLGPTINGCSWIELCPRTSRKHQLRIHCAEAL 357

Query: 538  GTPIVGDYKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHC 359
            GTPIVGDYKYGWFVHRRWKQMPRVD+EP +G+PYKLRRP+GLDVQKGSVLSKVPLLHLHC
Sbjct: 358  GTPIVGDYKYGWFVHRRWKQMPRVDVEPISGRPYKLRRPEGLDVQKGSVLSKVPLLHLHC 417

Query: 358  RELVLPNIAKFLKVFNGKSEYQSTEV-SLERDVLRFVASMPSHMKISWNLMSSYLV 194
            RELVLPNIAKFL VF  K       V S + D+LRFVA MPSHM+ISWNLMSSYLV
Sbjct: 418  RELVLPNIAKFLNVFYDKGPISHRPVSSFDFDLLRFVARMPSHMRISWNLMSSYLV 473


>ref|XP_013448024.1| RNA pseudouridine synthase [Medicago truncatula]
            gi|657377131|gb|KEH22051.1| RNA pseudouridine synthase
            [Medicago truncatula]
          Length = 534

 Score =  695 bits (1794), Expect = 0.0
 Identities = 335/467 (71%), Positives = 390/467 (83%), Gaps = 2/467 (0%)
 Frame = -1

Query: 1588 WLS--IRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKN 1415
            WLS  +R YSR+ PP PV+V  VIRVSNN+ARL  PK+GPKPRQLLS          GKN
Sbjct: 68   WLSSLVRYYSRVRPPRPVSVDKVIRVSNNIARLDVPKDGPKPRQLLSLPPFPSHPLPGKN 127

Query: 1414 MVTVPGRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMR 1235
              + PG    VTA++W+KYYF GV   VI+SHF +GLV  E    G+S ++ +  +KPMR
Sbjct: 128  STSAPGERDRVTAVNWIKYYFKGVPSSVIESHFREGLVQMEDLIAGDSFIQNKELLKPMR 187

Query: 1234 EVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIV 1055
            ++KP++VMK G RVHVPVS+AE+RISRR+D IPSGTLYPNADEIKYLQRLV Y+D+AIIV
Sbjct: 188  KIKPNDVMKPGSRVHVPVSIAETRISRRYDAIPSGTLYPNADEIKYLQRLVMYKDFAIIV 247

Query: 1054 LNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDH 875
            LNKPP+LPVKG+LP+HNSMDALAAAALSY Y+EGPKLVHRLDRE+SG+++MGRTK+S+ H
Sbjct: 248  LNKPPKLPVKGNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLMGRTKDSVSH 307

Query: 874  LNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTER 695
            L WLFSN     +  KAWNDACEAT+Q+YWALVIG+PKEKEG+I APLSKVL++D KTER
Sbjct: 308  LQWLFSNTNNAKSSCKAWNDACEATHQRYWALVIGTPKEKEGVIHAPLSKVLMNDRKTER 367

Query: 694  VILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDY 515
            V+LAH S  EP Q+A+TEYRVLGPMINGCSW+ELRP T RKHQLRVHCAEALGTPIVGDY
Sbjct: 368  VMLAHHSSIEPHQEAVTEYRVLGPMINGCSWIELRPLTYRKHQLRVHCAEALGTPIVGDY 427

Query: 514  KYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNI 335
            KYGW VH RWKQM RVD+EPTTGKPYKLRRP+GLDVQKGSVLSKVPLLHL+CRELVLPNI
Sbjct: 428  KYGWLVHSRWKQMARVDMEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLNCRELVLPNI 487

Query: 334  AKFLKVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            AKFL V    SE     +SL+ D+LRFVA+MP+HM+ISWNLMSSYLV
Sbjct: 488  AKFLHVLGKSSEELHPSLSLQPDILRFVATMPNHMRISWNLMSSYLV 534


>ref|XP_007209989.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
            gi|462405724|gb|EMJ11188.1| hypothetical protein
            PRUPE_ppa005240mg [Prunus persica]
          Length = 471

 Score =  695 bits (1794), Expect = 0.0
 Identities = 345/468 (73%), Positives = 390/468 (83%), Gaps = 7/468 (1%)
 Frame = -1

Query: 1576 RKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVPG 1397
            R+YSR+ PPP  +  P+IRVSN+VARLG PKEGPKPRQLLS                +PG
Sbjct: 16   REYSRVCPPPAKSAGPLIRVSNHVARLGPPKEGPKPRQLLSLPPFPGHP--------LPG 67

Query: 1396 RSPH-------VTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPM 1238
            +  H       VTA+SWVKYYF G+ D  IQSHF +GLV  EC  M    +EKEGQMKPM
Sbjct: 68   KRSHEGGVVSRVTAVSWVKYYFDGIYDSTIQSHFKQGLVQMECPGM----IEKEGQMKPM 123

Query: 1237 REVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAII 1058
            R+++PSEVM+VG RV+VPVSV ESR+SRRFD IPSGTLYPNADEI+Y+QR VKY+D AII
Sbjct: 124  RKIRPSEVMEVGARVYVPVSVVESRVSRRFDCIPSGTLYPNADEIEYMQRRVKYKDSAII 183

Query: 1057 VLNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESID 878
            VLNKPP+LPVKG+LP+HNSMDALAAAALSYG N+GPKLVHRLDRESSGL +MGRTKES+ 
Sbjct: 184  VLNKPPKLPVKGNLPVHNSMDALAAAALSYGNNKGPKLVHRLDRESSGLHLMGRTKESVS 243

Query: 877  HLNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTE 698
             L WL++++ +  +  +AW+DACEA YQ+YWALVIGSPKEKEGLICAPLSKVLLD+GKTE
Sbjct: 244  LLQWLYTDFNKGKSSCQAWDDACEARYQRYWALVIGSPKEKEGLICAPLSKVLLDNGKTE 303

Query: 697  RVILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGD 518
            RVILAHQSG E SQKAIT+YRVLGP INGCSW+ELRP TSRKHQLRVHCAEALGTPIVGD
Sbjct: 304  RVILAHQSGLEASQKAITQYRVLGPTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGD 363

Query: 517  YKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPN 338
            YKYGWFVHRRWKQMP VD+EPT+G PYKLRRP GLDVQKGSVLSKVPLLHLHCRELVLPN
Sbjct: 364  YKYGWFVHRRWKQMPHVDVEPTSGLPYKLRRPAGLDVQKGSVLSKVPLLHLHCRELVLPN 423

Query: 337  IAKFLKVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            IAKFL + + K +     VS + D+LRFVASMPSHMKISWNLMSSYLV
Sbjct: 424  IAKFLLILDQKLDSLHPAVSSKPDILRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 468

 Score =  693 bits (1789), Expect = 0.0
 Identities = 351/475 (73%), Positives = 391/475 (82%)
 Frame = -1

Query: 1618 MRKTIPKRPIWLSIRKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXX 1439
            M K I  R +    R YSRI+PPPP    PVIRVSNNVA LG PK+GPKPRQLLS     
Sbjct: 1    MWKNIYCRRVVSQGRSYSRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFP 60

Query: 1438 XXXXXGKNMVTVPGRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEK 1259
                 G+N +     + HVTAISWVKYYF  + D  IQSHFNKGL H EC N G   +E 
Sbjct: 61   GLPLPGRNSM-----ASHVTAISWVKYYFDEILDSAIQSHFNKGLAHIECPN-GSGSIEY 114

Query: 1258 EGQMKPMREVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVK 1079
             GQM  +R++K +++M+ G RVHV VSVAE+RIS+RFDTIPSGTLYPNADEI+YLQRLVK
Sbjct: 115  GGQMS-LRKIKHNDIMEAGARVHVAVSVAETRISKRFDTIPSGTLYPNADEIQYLQRLVK 173

Query: 1078 YRDWAIIVLNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMG 899
            Y+D AIIVLNKPPRLPVKG+LP+HNSMDALAAAALSY Y+EGPKLV RLDRESSGL++MG
Sbjct: 174  YKDSAIIVLNKPPRLPVKGNLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLLMG 233

Query: 898  RTKESIDHLNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVL 719
            RTKESIDHL WLFS+  + N+  KAWNDAC+ATYQ+YWALVIGSPKEKEGLI APLSKVL
Sbjct: 234  RTKESIDHLQWLFSDVNKSNSRCKAWNDACKATYQRYWALVIGSPKEKEGLIRAPLSKVL 293

Query: 718  LDDGKTERVILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEAL 539
            L+DGKTERV+LA  SG E SQ+A+TEYRVLGP INGCSW+ELRP TSRKHQLRVHCAEAL
Sbjct: 294  LNDGKTERVVLAQHSGLEASQEALTEYRVLGPRINGCSWIELRPLTSRKHQLRVHCAEAL 353

Query: 538  GTPIVGDYKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHC 359
            GTPIVGDYKYGW VH+RWKQMPRVDIEP +GKPYKLRRP GLDVQKGSVLSKVPLLHLHC
Sbjct: 354  GTPIVGDYKYGWCVHQRWKQMPRVDIEPFSGKPYKLRRPAGLDVQKGSVLSKVPLLHLHC 413

Query: 358  RELVLPNIAKFLKVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            RE VLPNIAKFL V N KSE     +  + D+LRFVASMP+HMKISWNLMSSYLV
Sbjct: 414  REFVLPNIAKFLAVLNEKSENIHPALDAKPDLLRFVASMPTHMKISWNLMSSYLV 468


>ref|XP_008239134.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Prunus mume]
          Length = 471

 Score =  691 bits (1784), Expect = 0.0
 Identities = 345/468 (73%), Positives = 389/468 (83%), Gaps = 7/468 (1%)
 Frame = -1

Query: 1576 RKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVPG 1397
            R+YSR+ PPP  +   +IRVSN+VARLG PKEGPKPRQLLS                +PG
Sbjct: 16   REYSRVCPPPAKSAGTLIRVSNHVARLGPPKEGPKPRQLLSLPPFPGHP--------LPG 67

Query: 1396 RSPH-------VTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPM 1238
            +  H       VTA+SWVKYYF G+ D  IQSHF +GLV  EC  +    +EKEGQMKPM
Sbjct: 68   KRSHEDGVVSRVTAVSWVKYYFDGIYDSTIQSHFKQGLVQMECPGL----IEKEGQMKPM 123

Query: 1237 REVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAII 1058
            R+++PSEVM+VG RV+VPVSVAESR+SRRFD IPSGTLYPNADEI+YLQR VKY+D AII
Sbjct: 124  RKIRPSEVMEVGARVYVPVSVAESRVSRRFDCIPSGTLYPNADEIEYLQRRVKYKDSAII 183

Query: 1057 VLNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESID 878
            VLNKPP+LPVKG+LP+HNSMDALAAAALSYG NEGPKLVHRLDRESSGL +MGRTKES+ 
Sbjct: 184  VLNKPPKLPVKGNLPVHNSMDALAAAALSYGNNEGPKLVHRLDRESSGLHLMGRTKESVS 243

Query: 877  HLNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTE 698
             L WL++++ +  +  +AW+DACEA YQ+YWALVIGSPKEKEGLICAPLSKVLLD+GKTE
Sbjct: 244  LLQWLYTDFNKGKSSCQAWDDACEARYQRYWALVIGSPKEKEGLICAPLSKVLLDNGKTE 303

Query: 697  RVILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGD 518
            RVILAHQSG E SQKAIT+YRVLGP I+GCSW+ELRP TSRKHQLRVHCAEALGTPIVGD
Sbjct: 304  RVILAHQSGLEASQKAITQYRVLGPTIHGCSWIELRPLTSRKHQLRVHCAEALGTPIVGD 363

Query: 517  YKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPN 338
            YKYGWFVHRRWKQMP VDIEPT+G PYKLRRP GLDVQKGSVLSKVPLLHLHCRELVLPN
Sbjct: 364  YKYGWFVHRRWKQMPHVDIEPTSGLPYKLRRPAGLDVQKGSVLSKVPLLHLHCRELVLPN 423

Query: 337  IAKFLKVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
            IAKFL + + K +     V  + D+LRFVASMPSHMKISWNLMSSYLV
Sbjct: 424  IAKFLLILDQKLDNLHPAVCSKPDILRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X1 [Glycine max] gi|947056077|gb|KRH05530.1| hypothetical
            protein GLYMA_17G232000 [Glycine max]
          Length = 476

 Score =  691 bits (1784), Expect = 0.0
 Identities = 335/461 (72%), Positives = 383/461 (83%)
 Frame = -1

Query: 1576 RKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVPG 1397
            R YSRI PP PV+V+PVI VSNN+ARL  PKEGPKPRQLLS           K+ ++   
Sbjct: 19   RHYSRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPGHPLPDKSSISGSR 78

Query: 1396 RSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPMREVKPSE 1217
            +  +VTA++W+KYYF G    VI+SHF +GLV  E     +S  +KE QMKPMR+++P+E
Sbjct: 79   QRDYVTAVNWIKYYFKGTWGSVIESHFREGLVQMEAD---DSSTQKEEQMKPMRKIRPNE 135

Query: 1216 VMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIVLNKPPR 1037
            VMK G RVHVPVS+ E+RIS+R+D IPSGTLYPNADEIKYLQRLV Y+D AIIVLNKPP+
Sbjct: 136  VMKRGARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPK 195

Query: 1036 LPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNWLFS 857
            LPVKG LP+HNSMDALAAAALSY Y+EGPKLVHRLDRESSG++++GRTK+S+ HL WLFS
Sbjct: 196  LPVKGSLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFS 255

Query: 856  NYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVILAHQ 677
            N     +  K WN+ACEATYQ+YWALVIG+PKEKEG+I APLSKVLL+DGKTER+ILAH 
Sbjct: 256  NINNAKSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHH 315

Query: 676  SGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYGWFV 497
            S  EP Q+A+TEYRVLGP INGCSWVELRP T RKHQLRVHCAEALGTPIVGDYKYGWFV
Sbjct: 316  SSVEPRQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFV 375

Query: 496  HRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLKV 317
            H RWKQMPRVDIEPTTGKPYKLRRP+GLDVQKGSVLSKVPLLHLHCRELVLPNI KF+ V
Sbjct: 376  HSRWKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHV 435

Query: 316  FNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
             N  SE   T +  + DVLRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 436  LNNSSEELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 476


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
            gi|557538602|gb|ESR49646.1| hypothetical protein
            CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  689 bits (1779), Expect = 0.0
 Identities = 352/471 (74%), Positives = 392/471 (83%), Gaps = 5/471 (1%)
 Frame = -1

Query: 1591 IWLS-IRKYSRISPPPPVNVKPVIRVSNN-VARLGCPKEGPKPRQLLSXXXXXXXXXXGK 1418
            IWLS IR YSRISPP P     VIRVS   VA LG PK GPKPRQLLS          GK
Sbjct: 10   IWLSSIRHYSRISPPRPA----VIRVSEKKVAHLGPPKAGPKPRQLLSLPPFPGHNLPGK 65

Query: 1417 NMVTVPGRSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSNMGESIVEKEGQMKPM 1238
            +     GR  HVTA+SWVKYYF  V+D VIQSHFNKGLV  EC+NMG+S VE +GQMKP+
Sbjct: 66   HW----GRQCHVTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVE-QGQMKPI 120

Query: 1237 REVKPSEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAII 1058
            R++K +EVM+ G R+ +PVS+ E RIS+R+DTIPSGTL PNADEI YL+RLVKYRD AI+
Sbjct: 121  RKIKTNEVMEPGARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAIL 180

Query: 1057 VLNKPPRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESID 878
            VLNKPP++P+KGHLP+HNSMDALAAAALSY YNEGPKLVHRLDRESSGL++MGRTKES+ 
Sbjct: 181  VLNKPPKVPLKGHLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVS 240

Query: 877  HLNWLFSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTE 698
             L WLFS+  +  +  KAWNDACEA YQ+YWALVIGSPKEK+G+I APLSKVLLDDGKTE
Sbjct: 241  LLTWLFSDVNKSKSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTE 300

Query: 697  RVILAHQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGD 518
            R+ILA  SG E SQ+A+TEYRVLGPMINGCSW+ELRP T RKHQLRVHCAEALGTPIVGD
Sbjct: 301  RIILAQNSGLEASQEAVTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGD 360

Query: 517  YKYGWFVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPN 338
            YKYGWFVHRRWKQMPRVDIEPT+GKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPN
Sbjct: 361  YKYGWFVHRRWKQMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPN 420

Query: 337  IAKFLKVFNGKSEYQSTEVSLE---RDVLRFVASMPSHMKISWNLMSSYLV 194
            IAKF  V N KS+     +S +    D+LRFVASMPSHMKISWNLMSSYLV
Sbjct: 421  IAKFRNVLNQKSDNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_012444478.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial [Gossypium
            raimondii] gi|823223472|ref|XP_012444479.1| PREDICTED:
            RNA pseudouridine synthase 3, mitochondrial [Gossypium
            raimondii] gi|763789432|gb|KJB56428.1| hypothetical
            protein B456_009G119600 [Gossypium raimondii]
          Length = 472

 Score =  688 bits (1775), Expect = 0.0
 Identities = 341/463 (73%), Positives = 390/463 (84%), Gaps = 2/463 (0%)
 Frame = -1

Query: 1576 RKYSRISPPPPVNVKPVIRVSNNVARLGCPKEGPKPRQLLSXXXXXXXXXXGKNMVTVPG 1397
            R YSR++PPPP    PVIRVSNNVA LG PK+GPKPRQLLS          GKN  T  G
Sbjct: 15   RHYSRVAPPPPAYADPVIRVSNNVAYLGSPKQGPKPRQLLSLPPFPGHHLPGKNSAT--G 72

Query: 1396 RSPHVTAISWVKYYFYGVKDDVIQSHFNKGLVHRECSN--MGESIVEKEGQMKPMREVKP 1223
            R   VTAISW+KYYF  + D  IQSHFNKGLV  E SN    +S +E++GQMK +R++K 
Sbjct: 73   R---VTAISWLKYYFDEISDSAIQSHFNKGLVEIESSNPNAADSFIERDGQMKSLRKIKH 129

Query: 1222 SEVMKVGDRVHVPVSVAESRISRRFDTIPSGTLYPNADEIKYLQRLVKYRDWAIIVLNKP 1043
            +EVM+VG RV VPVS+AE+R+S+RFD IPSGTL+PNADEI YL+RLVKY+D+AI+VLNKP
Sbjct: 130  NEVMEVGARVWVPVSIAETRVSKRFDCIPSGTLHPNADEIDYLRRLVKYKDYAILVLNKP 189

Query: 1042 PRLPVKGHLPIHNSMDALAAAALSYGYNEGPKLVHRLDRESSGLIIMGRTKESIDHLNWL 863
            P+LPVKG LP+HNSMDALAAAALSY Y+EGPKLVHRLDRESSGL++MGRTKESI+HL+WL
Sbjct: 190  PKLPVKGSLPVHNSMDALAAAALSYYYDEGPKLVHRLDRESSGLLLMGRTKESINHLHWL 249

Query: 862  FSNYKEVNTPHKAWNDACEATYQKYWALVIGSPKEKEGLICAPLSKVLLDDGKTERVILA 683
            F++     +  KAWNDAC+A +Q+YWALVIG+PKE EGLI +PLSK+LLDDGKTERVILA
Sbjct: 250  FNDINPAKSSCKAWNDACDAKFQRYWALVIGTPKENEGLIRSPLSKILLDDGKTERVILA 309

Query: 682  HQSGFEPSQKAITEYRVLGPMINGCSWVELRPHTSRKHQLRVHCAEALGTPIVGDYKYGW 503
               G EPSQ+A+TEYRVLGPMINGCSWVELRP TSRKHQLRVHCAEALGTPIVGDYKYGW
Sbjct: 310  QNVGLEPSQEAVTEYRVLGPMINGCSWVELRPLTSRKHQLRVHCAEALGTPIVGDYKYGW 369

Query: 502  FVHRRWKQMPRVDIEPTTGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFL 323
            FVHR+WKQMPRVDIE  TGKPYKLRRP+GLDVQKGSVLSKVPLLHLHCRELVLPNIAKFL
Sbjct: 370  FVHRKWKQMPRVDIEQRTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFL 429

Query: 322  KVFNGKSEYQSTEVSLERDVLRFVASMPSHMKISWNLMSSYLV 194
             + +  +E  S  +S + D+LRFVASMP HMKISWNLMSSYLV
Sbjct: 430  PLLSNNAETLSPGLSGKPDLLRFVASMPKHMKISWNLMSSYLV 472