BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00005141
         (4563 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_008358064.1| PREDICTED: DNA-directed RNA polymerase III s...  2051   0.0  
ref|XP_008222562.1| PREDICTED: DNA-directed RNA polymerase III s...  2051   0.0  
ref|XP_008358068.1| PREDICTED: DNA-directed RNA polymerase III s...  2049   0.0  
ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III s...  2043   0.0  
ref|XP_008465290.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  2041   0.0  
ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao...  2011   0.0  
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...  2004   0.0  
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...  1988   0.0  
ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III s...  1975   0.0  
ref|XP_012471451.1| PREDICTED: DNA-directed RNA polymerase III s...  1967   0.0  
ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citr...  1949   0.0  
ref|XP_010033188.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...  1941   0.0  
ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III s...  1930   0.0  
ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III s...  1929   0.0  
ref|XP_014493454.1| PREDICTED: DNA-directed RNA polymerase III s...  1914   0.0  
ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phas...  1912   0.0  
ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III s...  1909   0.0  
gb|KOM50756.1| hypothetical protein LR48_Vigan08g158300 [Vigna a...  1894   0.0  
ref|XP_011081084.1| PREDICTED: DNA-directed RNA polymerase III s...  1893   0.0  
ref|XP_012064930.1| PREDICTED: DNA-directed RNA polymerase III s...  1887   0.0  

>ref|XP_008358064.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Malus domestica]
          Length = 1419

 Score = 2051 bits (5313), Expect = 0.0
 Identities = 1031/1420 (72%), Positives = 1198/1420 (84%), Gaps = 29/1420 (2%)
 Frame = -2

Query: 4451 NRDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIEN 4272
            NR Q ++I+FTKQ FIED G  R++  +F+ +S  EI K+AEVQ++KGQYYDSNRKPIE 
Sbjct: 2    NRGQAKTIIFTKQPFIEDEGHLRIEKWKFSAMSDKEIRKMAEVQIFKGQYYDSNRKPIEG 61

Query: 4271 GLLDPRMGPPNKNS-KCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNC 4095
            GLLDPR+GP N++S  CATC G+  +CPGH+GYL LALPV+NVGY+S+IVDILKCICK C
Sbjct: 62   GLLDPRLGPANRSSGACATCGGTTKDCPGHFGYLVLALPVFNVGYLSTIVDILKCICKLC 121

Query: 4094 SRILLEDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS-----NKAIKCYRCGYVNGKV 3930
            S ILLE+  R + LKKMR PKM+ +KK+ LMK IVK  +     N+ +KC +CG++NG V
Sbjct: 122  SGILLEEGMRIEFLKKMRRPKMEPMKKSELMKVIVKKCNSLTTNNRPVKCSKCGFINGSV 181

Query: 3929 KKSTASQGVKIFHDRSRLFDGLEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLD 3750
            KK+    G  I HDRS+    ++D++SAISH K+SK S + + H +NPA V  LFKRM+D
Sbjct: 182  KKAVGVLG--IIHDRSKFIGVMDDFRSAISHTKESKASFNPATHNLNPARVFSLFKRMVD 239

Query: 3749 EDCELLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQE 3570
            EDCELLYLSDRPE L+M NIAVPPIPIRPSVI DG +SNENDITERLKR++Q N+SL+Q+
Sbjct: 240  EDCELLYLSDRPENLIMTNIAVPPIPIRPSVIVDGSQSNENDITERLKRIIQSNSSLRQD 299

Query: 3569 LLEANCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNL 3393
            L+EA+ AA+ L+ W+ LQVEVAQYINSDVRG PF+MQ +KP+ GFVQRLKGK GRFRGNL
Sbjct: 300  LIEASSAAKCLASWEILQVEVAQYINSDVRGVPFSMQTSKPLAGFVQRLKGKGGRFRGNL 359

Query: 3392 SGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYP 3213
            SGKRVEYTGRTVISPDPNLKITEV IPI MA ILTYPERVS+HNIEKLRQCVSNGPDKYP
Sbjct: 360  SGKRVEYTGRTVISPDPNLKITEVGIPIKMATILTYPERVSHHNIEKLRQCVSNGPDKYP 419

Query: 3212 GARMLRRADGSQWNLNVARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRA 3033
            GAR+LR +DG++W L V RK  AD LKYGDIV+RHLEDGD+VLFNRQPSLHRMS+MCHRA
Sbjct: 420  GARVLRNSDGTEWVLKVNRKSIADSLKYGDIVERHLEDGDVVLFNRQPSLHRMSLMCHRA 479

Query: 3032 RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEIL 2853
            ++MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGE+L
Sbjct: 480  KIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGEVL 539

Query: 2852 VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLF 2673
            VASTQDFLTSSFLITRKDTFYDRA+FSLMCSYMGDG D IDLPTP+VIKP+ELWTGKQLF
Sbjct: 540  VASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGADTIDLPTPSVIKPIELWTGKQLF 599

Query: 2672 SILVRPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATL 2493
            S+LVRP++NVRV+LN TV EK+YTK   +GREIEA+CPNDGFVYFRNSELI+GQLGK TL
Sbjct: 600  SVLVRPNSNVRVYLNXTVTEKSYTK-TGDGREIEAMCPNDGFVYFRNSELIAGQLGKGTL 658

Query: 2492 GNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQE 2313
            GNGNKDGLY VLLRDYK HAAA+CMNRLAKLSARWIGNHGFSIGI DVQPS  L+D+K++
Sbjct: 659  GNGNKDGLYSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPSDSLYDEKEK 718

Query: 2312 LILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRN 2133
            LI EGY KC  +I LYNEG LP  PG +AAQ+LE  I+ +LN IRD TGKLCMQ+LHWRN
Sbjct: 719  LIKEGYDKCGGQIKLYNEGQLPLVPGFDAAQSLETGITSLLNNIRDQTGKLCMQKLHWRN 778

Query: 2132 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVA 1953
            SPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF R  K P AKGFVA
Sbjct: 779  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRFAKMPAAKGFVA 838

Query: 1952 NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASG 1773
            +SFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL K +EDL V YD+ VRN+SG
Sbjct: 839  SSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKILEDLSVQYDNTVRNSSG 898

Query: 1772 CIVQFRYGDDNMDPANMEGK-NGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRL 1596
             IVQF YGDD MDPA MEGK +GAPL+F RLFLKAKATCPAG ++ LS E+VSEIV SRL
Sbjct: 899  SIVQFCYGDDGMDPAMMEGKESGAPLDFNRLFLKAKATCPAGGSDTLSXEEVSEIVSSRL 958

Query: 1595 SQQDMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVLHIS 1416
            S+ DMTP+GGC+  FKTSL+ FLD++V   + T E F L ++ A  E   T++KIV +IS
Sbjct: 959  SKHDMTPDGGCAAGFKTSLEKFLDKFVKTFRETHETFVLDQNPAWKEKSATLDKIVQNIS 1018

Query: 1415 GVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASMNIT 1236
            GVT++QL+VFLDTCISRYH KK+E GTAIG IG  SIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1019 GVTSQQLKVFLDTCISRYHSKKVEAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1078

Query: 1235 QGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVMTNR 1056
             GVPRIKEIIN AKKISTP+ITA LE D N   AR+V GRIEKT L  VAK++KTVMT+R
Sbjct: 1079 LGVPRIKEIINGAKKISTPIITAVLEWDTNAKFARLVAGRIEKTNLGQVAKSIKTVMTSR 1138

Query: 1055 SAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEVDRS 876
            +A+IVITLDM MIQDA LSIDANVV+ESIL+TP+IKLK EHI+VL+++KLEILPQE DRS
Sbjct: 1139 AASIVITLDMVMIQDAHLSIDANVVKESILRTPRIKLKSEHIRVLDIRKLEILPQEADRS 1198

Query: 875  KIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQ--------MSKCKLLVEGTGLL 720
            +++F+L+YLKS+LP VIV+G+ T++RV+I +E+ KK +          K KL  EGTGLL
Sbjct: 1199 RLYFHLDYLKSMLPKVIVRGVGTVQRVVINEEKXKKEKNDIEVKGDEKKYKLFAEGTGLL 1258

Query: 719  DVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADV 540
             VMGTEG+DG  TTSN ++EV +TLGIEAAR CII EI++ MKSHGM+ID+RHM+ LADV
Sbjct: 1259 AVMGTEGIDGCKTTSNDVMEVQRTLGIEAARVCIIEEIKKVMKSHGMNIDDRHMIFLADV 1318

Query: 539  MTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPV 360
            MT+RGEVLGI RFG+  MDKS+LMLASFE+T D LFNASVNGRVD IEGVSESIIMG+P+
Sbjct: 1319 MTYRGEVLGITRFGVSKMDKSVLMLASFERTDDILFNASVNGRVDKIEGVSESIIMGIPM 1378

Query: 359  QIGTGLFKVKQRV----DVPSD---------LCYGPDPIL 279
            QIGTG+FKV+Q V    + P+D         L YGP  IL
Sbjct: 1379 QIGTGMFKVRQSVSSCLEQPTDLGLXRSDVQLDYGPQXIL 1418


>ref|XP_008222562.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Prunus mume]
          Length = 1425

 Score = 2051 bits (5313), Expect = 0.0
 Identities = 1029/1424 (72%), Positives = 1191/1424 (83%), Gaps = 33/1424 (2%)
 Frame = -2

Query: 4451 NRDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIEN 4272
            NR Q ++++FTKQ FIED G R+++  QF+T+S +EI  +AE Q++K  YYD N+KPIE 
Sbjct: 5    NRGQAKTLIFTKQPFIEDEGHRKIEKWQFSTMSDTEIVNMAETQIYKCNYYDPNQKPIEG 64

Query: 4271 GLLDPRMGPPNKNS-KCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNC 4095
            GLLDPR+GP NK+S +CATC     +CPGH+G+L LALPV NVGY+S+IVDILKCICK C
Sbjct: 65   GLLDPRLGPANKSSGECATCGAVMKDCPGHFGFLVLALPVLNVGYLSTIVDILKCICKLC 124

Query: 4094 SRILLEDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLSN-----KAIKCYRCGYVNGKV 3930
            S ILLE+  R   LKKMRSPKM+ L+KT LMK IVK  +N     + +KC +CG++NG V
Sbjct: 125  SGILLEEGMRNDFLKKMRSPKMEPLRKTELMKKIVKKCNNLTTNYRPVKCSKCGFINGSV 184

Query: 3929 KKSTASQGVKIFHDRSRLFDGLEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLD 3750
            KK+    G  I HDRS+L   ++D+++ +SH K+SK S +++ H++NPA ++ LFKRM+D
Sbjct: 185  KKAVGVLG--IIHDRSKLNGVMDDFRTTLSHTKESKASFNVATHMLNPARIYSLFKRMVD 242

Query: 3749 EDCELLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQE 3570
            EDCELL LS+RPE L+M NIAVPPI IRPSVI D   SNENDITERLKR++Q NA L+++
Sbjct: 243  EDCELLNLSNRPENLIMKNIAVPPIAIRPSVIVDRSLSNENDITERLKRIIQSNAILRRD 302

Query: 3569 LLEANCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNL 3393
            LLEA  A + L+ WD LQVEVAQYINSD+RG PF+MQ AKP+ GFVQRLKGK GRFRGNL
Sbjct: 303  LLEAKSAPKCLASWDILQVEVAQYINSDIRGVPFSMQTAKPLSGFVQRLKGKGGRFRGNL 362

Query: 3392 SGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYP 3213
            SGKRVEYTGRTVISPDPNLKITEV IPI MA+ILTYPERVS+HNIEKLRQCVSNGPDKYP
Sbjct: 363  SGKRVEYTGRTVISPDPNLKITEVGIPIKMAQILTYPERVSHHNIEKLRQCVSNGPDKYP 422

Query: 3212 GARMLRRADGSQWNLNVARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRA 3033
            GARMLR  DG++W+L V RK  AD LKYGDIV+RHLEDGDIVLFNRQPSLHRMSIMCHRA
Sbjct: 423  GARMLRNPDGTEWSLKVNRKNAADGLKYGDIVERHLEDGDIVLFNRQPSLHRMSIMCHRA 482

Query: 3032 RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEIL 2853
            +VMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+LLMGVQNNLCTPKNGE+L
Sbjct: 483  KVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVLLMGVQNNLCTPKNGEVL 542

Query: 2852 VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLF 2673
            VASTQDFLTSSFLITRKDTFYDRA+FSLMCSYMGDG D +DLPTPAVIKP+ELWTGKQLF
Sbjct: 543  VASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGTDPVDLPTPAVIKPIELWTGKQLF 602

Query: 2672 SILVRPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATL 2493
            S+LVRP++NVRV+LN TV EK+Y+K    G E  A+CPNDGFVYFRNSELI+GQLGK TL
Sbjct: 603  SVLVRPNSNVRVYLNFTVNEKSYSKTEDGGPE--AMCPNDGFVYFRNSELIAGQLGKGTL 660

Query: 2492 GNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQE 2313
            GNGNKDGLY VLLRDYK HAAA+CMNRLAKLSARWIGNHGFSIGI DVQPS  L+++K++
Sbjct: 661  GNGNKDGLYSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPSDNLYNEKEK 720

Query: 2312 LILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRN 2133
            +I EGY KC  KI LYNEG LP EPGC+AAQ+LE+ I++ILN IRD TGKLCMQ LHWRN
Sbjct: 721  IIKEGYNKCAGKIKLYNEGQLPLEPGCDAAQSLESGITKILNNIRDQTGKLCMQTLHWRN 780

Query: 2132 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVA 1953
            SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHF R  KTP AKGFVA
Sbjct: 781  SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKAKTPAAKGFVA 840

Query: 1952 NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASG 1773
            +SFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL K +EDL V YD+ VRNASG
Sbjct: 841  SSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKILEDLSVQYDNTVRNASG 900

Query: 1772 CIVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRLS 1593
            CIVQF YGDD MDPA MEG+ GAPL+F RLFLKAKATCPAGENE LS E+VSEIV+ RLS
Sbjct: 901  CIVQFCYGDDGMDPAMMEGEGGAPLDFRRLFLKAKATCPAGENESLSLEEVSEIVKDRLS 960

Query: 1592 QQDMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVLHISG 1413
            +QDMTP+ GCS  FK+SL+ FLD+Y   L++T + F L +S A  E   ++EKIV +ISG
Sbjct: 961  KQDMTPDRGCSAGFKSSLEEFLDKYAKELRKTHDTFVLDQSPAWKEKSASLEKIVQNISG 1020

Query: 1412 VTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASMNITQ 1233
            VT +QLEVFL+TCISRYH KK+E GTAIG IG  SIGEPGTQMTLKTFHFAGVASMN+T 
Sbjct: 1021 VTCKQLEVFLNTCISRYHSKKVEAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVTL 1080

Query: 1232 GVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVMTNRS 1053
            GVPRIKEIIN AKKISTP++TA LE ++N   ARVV GRIEKT L  V+K++K VMT+RS
Sbjct: 1081 GVPRIKEIINGAKKISTPIVTAILEHNNNAKFARVVAGRIEKTMLGQVSKSIKIVMTSRS 1140

Query: 1052 AAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEVDRSK 873
            A+IVITLDM MIQDA LSIDANVV+ESIL+TP+IKLKQEH+KVL+++KLEILPQE DRS+
Sbjct: 1141 ASIVITLDMVMIQDAHLSIDANVVKESILRTPRIKLKQEHVKVLDIRKLEILPQEADRSR 1200

Query: 872  IHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKT--------------QMSKCKLLVE 735
            +HFNL YLKS+LP VIV+GI T++RV+I  +E KK               +  + KL  E
Sbjct: 1201 LHFNLYYLKSVLPKVIVRGISTVQRVVIDAKEVKKNKKDLEVTCADGDKREEKEYKLFAE 1260

Query: 734  GTGLLDVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMM 555
            GTGLL VMGTEGVDG  TTSN ++EV +TLGIEAAR CII EI+ TMKSHGM+ID+RHM+
Sbjct: 1261 GTGLLSVMGTEGVDGCKTTSNDVMEVQRTLGIEAARVCIIEEIKHTMKSHGMNIDDRHMI 1320

Query: 554  LLADVMTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESII 375
             LADVMT+RGEVLGI RFG+Q MDKS+LM+ASFE+T D LFNA VNGRVD +EGVSESII
Sbjct: 1321 FLADVMTYRGEVLGITRFGVQKMDKSVLMMASFERTDDILFNACVNGRVDKVEGVSESII 1380

Query: 374  MGMPVQIGTGLFKVKQRV------------DVPSDLCYGPDPIL 279
            MG+P+QIGTG+FKV+QRV            +   +L YGP P L
Sbjct: 1381 MGIPMQIGTGIFKVRQRVSSDLRQPTYLGPNSDVELHYGPHPSL 1424


>ref|XP_008358068.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
            [Malus domestica]
          Length = 1390

 Score = 2049 bits (5308), Expect = 0.0
 Identities = 1023/1392 (73%), Positives = 1188/1392 (85%), Gaps = 16/1392 (1%)
 Frame = -2

Query: 4451 NRDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIEN 4272
            NR Q ++I+FTKQ FIED G  R++  +F+ +S  EI K+AEVQ++KGQYYDSNRKPIE 
Sbjct: 2    NRGQAKTIIFTKQPFIEDEGHLRIEKWKFSAMSDKEIRKMAEVQIFKGQYYDSNRKPIEG 61

Query: 4271 GLLDPRMGPPNKNS-KCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNC 4095
            GLLDPR+GP N++S  CATC G+  +CPGH+GYL LALPV+NVGY+S+IVDILKCICK C
Sbjct: 62   GLLDPRLGPANRSSGACATCGGTTKDCPGHFGYLVLALPVFNVGYLSTIVDILKCICKLC 121

Query: 4094 SRILLEDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS-----NKAIKCYRCGYVNGKV 3930
            S ILLE+  R + LKKMR PKM+ +KK+ LMK IVK  +     N+ +KC +CG++NG V
Sbjct: 122  SGILLEEGMRIEFLKKMRRPKMEPMKKSELMKVIVKKCNSLTTNNRPVKCSKCGFINGSV 181

Query: 3929 KKSTASQGVKIFHDRSRLFDGLEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLD 3750
            KK+    G  I HDRS+    ++D++SAISH K+SK S + + H +NPA V  LFKRM+D
Sbjct: 182  KKAVGVLG--IIHDRSKFIGVMDDFRSAISHTKESKASFNPATHNLNPARVFSLFKRMVD 239

Query: 3749 EDCELLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQE 3570
            EDCELLYLSDRPE L+M NIAVPPIPIRPSVI DG +SNENDITERLKR++Q N+SL+Q+
Sbjct: 240  EDCELLYLSDRPENLIMTNIAVPPIPIRPSVIVDGSQSNENDITERLKRIIQSNSSLRQD 299

Query: 3569 LLEANCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNL 3393
            L+EA+ AA+ L+ W+ LQVEVAQYINSDVRG PF+MQ +KP+ GFVQRLKGK GRFRGNL
Sbjct: 300  LIEASSAAKCLASWEILQVEVAQYINSDVRGVPFSMQTSKPLAGFVQRLKGKGGRFRGNL 359

Query: 3392 SGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYP 3213
            SGKRVEYTGRTVISPDPNLKITEV IPI MA ILTYPERVS+HNIEKLRQCVSNGPDKYP
Sbjct: 360  SGKRVEYTGRTVISPDPNLKITEVGIPIKMATILTYPERVSHHNIEKLRQCVSNGPDKYP 419

Query: 3212 GARMLRRADGSQWNLNVARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRA 3033
            GAR+LR +DG++W L V RK  AD LKYGDIV+RHLEDGD+VLFNRQPSLHRMS+MCHRA
Sbjct: 420  GARVLRNSDGTEWVLKVNRKSIADSLKYGDIVERHLEDGDVVLFNRQPSLHRMSLMCHRA 479

Query: 3032 RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEIL 2853
            ++MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+ LMGVQNNLCTPKNGE+L
Sbjct: 480  KIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALTLMGVQNNLCTPKNGEVL 539

Query: 2852 VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLF 2673
            VASTQDFLTSSFLITRKDTFYDRA+FSLMCSYMGDG D IDLPTP+VIKP+ELWTGKQLF
Sbjct: 540  VASTQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGADTIDLPTPSVIKPIELWTGKQLF 599

Query: 2672 SILVRPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATL 2493
            S+LVRP++NVRV+LN TV EK+YTK   +GREIEA+CPNDGFVYFRNSELI+GQLGK TL
Sbjct: 600  SVLVRPNSNVRVYLNXTVTEKSYTK-TGDGREIEAMCPNDGFVYFRNSELIAGQLGKGTL 658

Query: 2492 GNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQE 2313
            GNGNKDGLY VLLRDYK HAAA+CMNRLAKLSARWIGNHGFSIGI DVQPS  L+D+K++
Sbjct: 659  GNGNKDGLYSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGISDVQPSDSLYDEKEK 718

Query: 2312 LILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRN 2133
            LI EGY KC  +I LYNEG LP  PG +AAQ+LE  I+ +LN IRD TGKLCMQ+LHWRN
Sbjct: 719  LIKEGYDKCGGQIKLYNEGQLPLVPGFDAAQSLETGITSLLNNIRDQTGKLCMQKLHWRN 778

Query: 2132 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVA 1953
            SPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF R  K P AKGFVA
Sbjct: 779  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRFAKMPAAKGFVA 838

Query: 1952 NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASG 1773
            +SFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL K +EDL V YD+ VRN+SG
Sbjct: 839  SSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKILEDLSVQYDNTVRNSSG 898

Query: 1772 CIVQFRYGDDNMDPANMEGK-NGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRL 1596
             IVQF YGDD MDPA MEGK +GAPL+F RLFLKAKATCPAG ++ LS E+VSEIV SRL
Sbjct: 899  SIVQFCYGDDGMDPAMMEGKESGAPLDFNRLFLKAKATCPAGGSDTLSXEEVSEIVSSRL 958

Query: 1595 SQQDMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVLHIS 1416
            S+ DMTP+GGC+  FKTSL+ FLD++V   + T E F L ++ A  E   T++KIV +IS
Sbjct: 959  SKHDMTPDGGCAAGFKTSLEKFLDKFVKTFRETHETFVLDQNPAWKEKSATLDKIVQNIS 1018

Query: 1415 GVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASMNIT 1236
            GVT++QL+VFLDTCISRYH KK+E GTAIG IG  SIGEPGTQMTLKTFHFAGVASMN+T
Sbjct: 1019 GVTSQQLKVFLDTCISRYHSKKVEAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVT 1078

Query: 1235 QGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVMTNR 1056
             GVPRIKEIIN AKKISTP+ITA LE D N   AR+V GRIEKT L  VAK++KTVMT+R
Sbjct: 1079 LGVPRIKEIINGAKKISTPIITAVLEWDTNAKFARLVAGRIEKTNLGQVAKSIKTVMTSR 1138

Query: 1055 SAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEVDRS 876
            +A+IVITLDM MIQDA LSIDANVV+ESIL+TP+IKLK EHI+VL+++KLEILPQE DRS
Sbjct: 1139 AASIVITLDMVMIQDAHLSIDANVVKESILRTPRIKLKSEHIRVLDIRKLEILPQEADRS 1198

Query: 875  KIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQ--------MSKCKLLVEGTGLL 720
            +++F+L+YLKS+LP VIV+G+ T++RV+I +E+ KK +          K KL  EGTGLL
Sbjct: 1199 RLYFHLDYLKSMLPKVIVRGVGTVQRVVINEEKXKKEKNDIEVKGDEKKYKLFAEGTGLL 1258

Query: 719  DVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADV 540
             VMGTEG+DG  TTSN ++EV +TLGIEAAR CII EI++ MKSHGM+ID+RHM+ LADV
Sbjct: 1259 AVMGTEGIDGCKTTSNDVMEVQRTLGIEAARVCIIEEIKKVMKSHGMNIDDRHMIFLADV 1318

Query: 539  MTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPV 360
            MT+RGEVLGI RFG+  MDKS+LMLASFE+T D LFNASVNGRVD IEGVSESIIMG+P+
Sbjct: 1319 MTYRGEVLGITRFGVSKMDKSVLMLASFERTDDILFNASVNGRVDKIEGVSESIIMGIPM 1378

Query: 359  QIGTGLFKVKQR 324
            QIGTG+FKV+QR
Sbjct: 1379 QIGTGMFKVRQR 1390


>ref|XP_004148776.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Cucumis
            sativus]
          Length = 1400

 Score = 2043 bits (5294), Expect = 0.0
 Identities = 1016/1407 (72%), Positives = 1184/1407 (84%), Gaps = 16/1407 (1%)
 Frame = -2

Query: 4451 NRDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIEN 4272
            NR Q + +VFTKQ +IEDVGPR++KSMQFTT SG+EISKLAEVQV+KG YYD+ RKPI+ 
Sbjct: 2    NRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDG 61

Query: 4271 GLLDPRMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCS 4092
            GLLDPRMGP NK  KCATCH ++ +CPGHYGY+ LALPV+NVGY ++I++ILKCICK+CS
Sbjct: 62   GLLDPRMGPANKGCKCATCHANFGDCPGHYGYVNLALPVFNVGYFTTILEILKCICKSCS 121

Query: 4091 RILLEDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS-----NKAIKCYRCGYVNGKVK 3927
            RILLE++  +  L+KMR+PK++AL+K  L+K I+K  S     NK+ +C RCGY+NG VK
Sbjct: 122  RILLEEKLFKDFLRKMRNPKLEALRKVDLVKKIIKKCSTLTTGNKSTRCSRCGYLNGSVK 181

Query: 3926 KSTASQGVKIFHDRSRLFDGLEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDE 3747
            K+ +  G+  +  RS         K A    +D +   ++SN ++NP  V  LF+RM DE
Sbjct: 182  KAVSMLGILHYRARS---------KDAGVVSEDLRAPYNVSNDILNPFRVLCLFQRMSDE 232

Query: 3746 DCELLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQEL 3567
            DCELL+LS+RPEKL++ N+ VPPI IRPSVI DG +SNENDITERLKR++Q NAS+ QEL
Sbjct: 233  DCELLFLSNRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQEL 292

Query: 3566 LEANCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLS 3390
              +N  A+ L  WD LQ EVAQ INSDVRG PF+MQV+KP+ GFVQRLKGKQGRFRGNL 
Sbjct: 293  STSNSQAKCLESWDMLQSEVAQLINSDVRGIPFSMQVSKPLAGFVQRLKGKQGRFRGNLC 352

Query: 3389 GKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPG 3210
            GKRVE+TGRTVISPDPNLKITEVA+PIHMARILTYPERV+ HNIEKLRQCVSNGPDKYPG
Sbjct: 353  GKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTRHNIEKLRQCVSNGPDKYPG 412

Query: 3209 ARMLRRADGSQWNLNVA-RKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRA 3033
            ARMLR  DGS  +L ++ RKR ADELKYG+IV+RHLEDGD+VLFNRQPSLHRMSIMCHR 
Sbjct: 413  ARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRV 472

Query: 3032 RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEIL 2853
            RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEIL
Sbjct: 473  RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEIL 532

Query: 2852 VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLF 2673
            VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD +DLPTPA++KP+ELWTGKQLF
Sbjct: 533  VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPALVKPIELWTGKQLF 592

Query: 2672 SILVRPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATL 2493
            S+LVRP A+++V+LNLTV+EK+Y+K+  N +E E +CPNDGFVYFRNSELISGQ+GKATL
Sbjct: 593  SVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATL 652

Query: 2492 GNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQE 2313
            GNGNKDGLY VLLRDYK HAAA CMNRLAKLSARWIGNHGFSIGIDDVQP  +L  +KQ 
Sbjct: 653  GNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVKKKQT 712

Query: 2312 LILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRN 2133
             ILEGY  CD++I+L+N G+LPPE GC+AAQ+LE+KI+QILNGIR+AT  +CMQ LHWRN
Sbjct: 713  TILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLESKITQILNGIREATANVCMQNLHWRN 772

Query: 2132 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVA 1953
            SPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPDGFIDRSLPHF R  KTP AKGFVA
Sbjct: 773  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVA 832

Query: 1952 NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASG 1773
            NSFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KA+EDL +HYD +VRNA G
Sbjct: 833  NSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDSSVRNAGG 892

Query: 1772 CIVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRLS 1593
            CIVQF YGDD MDPA MEGK+GAPLNFERLFLKAKATCP+  N+ LSP + SE VE RLS
Sbjct: 893  CIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLS 952

Query: 1592 QQDMTPEGGCSLAFKTSLKCFLDEYVTALKRT------QERFGLIESLAAMENFETV--- 1440
            + D +PE GCS AF  SLK FL++YV A K++           + +S+ +  + + +   
Sbjct: 953  KDDASPECGCSPAFVGSLKIFLNKYVEAQKKSWGTLLADNESAVDKSIISSSDNDNIVIR 1012

Query: 1439 EKIVLHISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFA 1260
             K+V +I+GVT RQL+VFLDTC+SRYH KKIE GTAIGAIG  SIGEPGTQMTLKTFHFA
Sbjct: 1013 NKVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 1072

Query: 1259 GVASMNITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKT 1080
            GVASMN+T GVPRIKEIIN AK+ISTP++TA L  DDNVN+AR+V+ RIEKT L  +AK 
Sbjct: 1073 GVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKC 1132

Query: 1079 LKTVMTNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEI 900
            ++ VM++RSA I I LDM+ I+DA+L +DANVV+++IL TPK+KLK EHI VL+ +KL +
Sbjct: 1133 IQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRV 1192

Query: 899  LPQEVDRSKIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQMSKCKLLVEGTGLL 720
            LPQ+ DR+K+HFNL++LK++LP V+VKGIKT+ R +IK+E+DK     K  LLVEGTGL 
Sbjct: 1193 LPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQ 1252

Query: 719  DVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADV 540
             VMGTEGVDG NT SNHIIEV Q LGIEAARKCII EI+ TM+SHGMSID RHMMLL D+
Sbjct: 1253 AVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDL 1312

Query: 539  MTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPV 360
            MTFRGEVLGI RFGIQ MDKS+LMLASFEKTADHLFNASVNGR D IEGVSE +IMG+P+
Sbjct: 1313 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPM 1372

Query: 359  QIGTGLFKVKQRVDVPSDLCYGPDPIL 279
             +GTG+ KV+QRV VP  L YGP  IL
Sbjct: 1373 PLGTGMLKVRQRVSVPQQLPYGPPAIL 1399


>ref|XP_008465290.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit rpc1 [Cucumis melo]
          Length = 1400

 Score = 2041 bits (5287), Expect = 0.0
 Identities = 1018/1407 (72%), Positives = 1179/1407 (83%), Gaps = 16/1407 (1%)
 Frame = -2

Query: 4451 NRDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIEN 4272
            NR Q + +VFTKQ +IEDVGPR++KSMQFTT SG+EISKLAEVQV+KG YYD+ RKPI+ 
Sbjct: 2    NRAQVEGLVFTKQPYIEDVGPRKIKSMQFTTFSGAEISKLAEVQVYKGLYYDTTRKPIDG 61

Query: 4271 GLLDPRMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCS 4092
            GLLDPRMGP NK  KC+TCH ++ +CPGHYGY+ L+LPV+NVGY ++I++ILKCICK+CS
Sbjct: 62   GLLDPRMGPANKGCKCSTCHANFGDCPGHYGYVNLSLPVFNVGYFTTILEILKCICKSCS 121

Query: 4091 RILLEDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS-----NKAIKCYRCGYVNGKVK 3927
            RILLE++  +  L+KMR+PK++AL+K  L+K I+K  S     NK+ KC RCGY+NG VK
Sbjct: 122  RILLEEKLYKDFLRKMRNPKLEALRKCDLVKKIIKKCSTLTTGNKSTKCSRCGYLNGSVK 181

Query: 3926 KSTASQGVKIFHDRSRLFDGLEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDE 3747
            K+ +  G+  +  RS         K A    +D +   ++SN ++NP  V  LF+RM DE
Sbjct: 182  KAVSMLGILHYRARS---------KDAGVVSEDLRAPYNVSNDILNPFRVLCLFQRMSDE 232

Query: 3746 DCELLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQEL 3567
            DCELL+LSDRPEKL++ N+ VPPI IRPSVI DG +SNENDITERLKR++Q NAS+ QEL
Sbjct: 233  DCELLFLSDRPEKLIITNVLVPPIAIRPSVIMDGSQSNENDITERLKRIIQQNASVSQEL 292

Query: 3566 LEANCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLS 3390
              +N  A+ L  WD LQ EVAQ INSDVRG PF MQV+KP+ GFVQRLKGKQGRFRGNL 
Sbjct: 293  STSNSQAKCLESWDMLQSEVAQLINSDVRGIPFTMQVSKPLAGFVQRLKGKQGRFRGNLC 352

Query: 3389 GKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPG 3210
            GKRVE+TGRTVISPDPNLKITEVA+PIHMARILTYPERV+ HNIEKLRQCVSNGPDKYPG
Sbjct: 353  GKRVEFTGRTVISPDPNLKITEVAVPIHMARILTYPERVTSHNIEKLRQCVSNGPDKYPG 412

Query: 3209 ARMLRRADGSQWNLNVA-RKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRA 3033
            ARMLR  DGS  +L ++ RKR ADELKYG+IV+RHLEDGD+VLFNRQPSLHRMSIMCHR 
Sbjct: 413  ARMLRHLDGSMRSLMISGRKRLADELKYGEIVERHLEDGDVVLFNRQPSLHRMSIMCHRV 472

Query: 3032 RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEIL 2853
            RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEIL
Sbjct: 473  RVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEIL 532

Query: 2852 VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLF 2673
            VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD IDLPTPA+IKP+ELWTGKQLF
Sbjct: 533  VASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLIDLPTPALIKPIELWTGKQLF 592

Query: 2672 SILVRPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATL 2493
            S+LVRP A+++V+LNLTV+EK+Y+K+  N +E E +CPNDGFVYFRNSELISGQ+GKATL
Sbjct: 593  SVLVRPHASMKVYLNLTVKEKSYSKVKGNEKERETMCPNDGFVYFRNSELISGQVGKATL 652

Query: 2492 GNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQE 2313
            GNGNKDGLY VLLRDYK HAAA CMNRLAKLSARWIGNHGFSIGIDDVQP  +L  +KQ 
Sbjct: 653  GNGNKDGLYSVLLRDYKAHAAAVCMNRLAKLSARWIGNHGFSIGIDDVQPGDQLVXKKQT 712

Query: 2312 LILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRN 2133
             ILEGY  CD++I+L+N G+LPPE GC+AAQ+LEAKI+QILNGIR+AT  +CMQ LHWRN
Sbjct: 713  TILEGYRDCDKQINLFNTGNLPPEAGCDAAQSLEAKITQILNGIREATANVCMQNLHWRN 772

Query: 2132 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVA 1953
            SPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAPDGFIDRSLPHF R  KTP AKGFVA
Sbjct: 773  SPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPDGFIDRSLPHFRRKAKTPAAKGFVA 832

Query: 1952 NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASG 1773
            NSFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KA+EDL ++YD +VRNA G
Sbjct: 833  NSFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIYYDSSVRNAGG 892

Query: 1772 CIVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRLS 1593
            CIVQF YGDD MDPA MEGK+GAPLNFERLFLKAKATCP+  N+ LSP + SE VE RLS
Sbjct: 893  CIVQFCYGDDGMDPAQMEGKSGAPLNFERLFLKAKATCPSDGNKILSPSEFSETVEDRLS 952

Query: 1592 QQDMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERF---------GLIESLAAMENFETV 1440
            + D +PE GCS AF  SLK FL++Y+ A K++               I S +  +N    
Sbjct: 953  KDDASPECGCSPAFIGSLKIFLNKYIEAQKKSWSTLLADNETAVDKSIISSSDNDNIVIR 1012

Query: 1439 EKIVLHISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFA 1260
              +V +I+GVT RQL+VFLDTC+SRYH KKIE GTAIGAIG  SIGEPGTQMTLKTFHFA
Sbjct: 1013 NNVVQNIAGVTHRQLQVFLDTCLSRYHTKKIEAGTAIGAIGAQSIGEPGTQMTLKTFHFA 1072

Query: 1259 GVASMNITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKT 1080
            GVASMN+T GVPRIKEIIN AK+ISTP++TA L  DDNVN+AR+V+ RIEKT L  +AK 
Sbjct: 1073 GVASMNVTLGVPRIKEIINGAKRISTPIVTAALTHDDNVNIARMVKARIEKTNLGQIAKC 1132

Query: 1079 LKTVMTNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEI 900
            ++ VM++RSA I I LDM+ I+DA+L +DANVV+++IL TPK+KLK EHI VL+ +KL +
Sbjct: 1133 IQIVMSSRSALIEIKLDMEKIRDAELYVDANVVKQAILVTPKLKLKHEHINVLDDRKLRV 1192

Query: 899  LPQEVDRSKIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQMSKCKLLVEGTGLL 720
            LPQ+ DR+K+HFNL++LK++LP V+VKGIKT+ R +IK+E+DK     K  LLVEGTGL 
Sbjct: 1193 LPQDADRNKLHFNLHFLKNMLPGVVVKGIKTVGRAVIKEEKDKARNAKKFSLLVEGTGLQ 1252

Query: 719  DVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADV 540
             VMGTEGVDG NT SNHIIEV Q LGIEAARKCII EI+ TM+SHGMSID RHMMLL D+
Sbjct: 1253 AVMGTEGVDGCNTKSNHIIEVQQVLGIEAARKCIIEEIKYTMESHGMSIDIRHMMLLGDL 1312

Query: 539  MTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPV 360
            MTFRGEVLGI RFGIQ MDKS+LMLASFEKTADHLFNASVNGR D IEGVSE +IMG+P+
Sbjct: 1313 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDKIEGVSECVIMGIPM 1372

Query: 359  QIGTGLFKVKQRVDVPSDLCYGPDPIL 279
             +GTG+ KV+QRV VP  L YGP  IL
Sbjct: 1373 PLGTGMLKVRQRVSVPRQLPYGPPAIL 1399


>ref|XP_007036220.1| DNA-directed RNA polymerase [Theobroma cacao]
            gi|508773465|gb|EOY20721.1| DNA-directed RNA polymerase
            [Theobroma cacao]
          Length = 1395

 Score = 2011 bits (5211), Expect = 0.0
 Identities = 1016/1400 (72%), Positives = 1181/1400 (84%), Gaps = 18/1400 (1%)
 Frame = -2

Query: 4424 FTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENGLLDPRMGP 4245
            FTK+ +IEDVGPR++KS+QF+ LS SEI+K AEVQV++  YYD   +PIE GLLDPRMGP
Sbjct: 5    FTKRPYIEDVGPRKIKSIQFSMLSDSEIAKAAEVQVYQALYYDPKSRPIEGGLLDPRMGP 64

Query: 4244 PNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSRILLEDERR 4065
             NK+ KCATCHG++A+CPGHYGYL LALPVYNVGY+S+I+DILKCICK+CSRI+L+++  
Sbjct: 65   ANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILDILKCICKSCSRIILDEKLC 124

Query: 4064 QKLLKKMRSPKMDALKKTRLMKDIVKDLS----NKAIKCYRCGYVNGKVKKSTASQGVKI 3897
            +  LK+MRSPK+DALKK  +MK IVK  S    +KA+KC+RCGYVNG VKK+ A  G  I
Sbjct: 125  KDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWRCGYVNGTVKKAVAMLG--I 182

Query: 3896 FHDRSRLFDG-LEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCELLYLSD 3720
             HDRS++ D  LE+++SAISH K+SK S +++ +V+NP  V  LFKRM D DCELLYLSD
Sbjct: 183  IHDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLSLFKRMTDLDCELLYLSD 242

Query: 3719 RPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELLEANCAAR- 3543
            RPEKL++ NIAVPPIPIRPSVI DG +SNENDITERLKR++Q NASL+QEL+E N A + 
Sbjct: 243  RPEKLIITNIAVPPIPIRPSVIMDGSQSNENDITERLKRIIQANASLRQELVETNAAFKC 302

Query: 3542 LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGKRVEYTGR 3363
            L GW+ LQVEVAQYINSDVRG PF+MQV+KP+ GFVQR+KGK GRFRGNLSGKRVEYTGR
Sbjct: 303  LGGWEMLQVEVAQYINSDVRGVPFSMQVSKPLSGFVQRIKGKHGRFRGNLSGKRVEYTGR 362

Query: 3362 TVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARMLRRADG 3183
            TVISPDPNLKITEVAIPIHMARILTYPERVS HNIEKLRQCV NGP KYPGARM+R  DG
Sbjct: 363  TVISPDPNLKITEVAIPIHMARILTYPERVSNHNIEKLRQCVRNGPSKYPGARMVRYPDG 422

Query: 3182 S-QWNLNVARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVMPWRTLR 3006
            S +  +   RKR ADELK+G +VDRHLEDGDIVLFNRQPSLHRMSIMCHRAR+MPWRTLR
Sbjct: 423  SARLLIGDYRKRLADELKFGCVVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIMPWRTLR 482

Query: 3005 FNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQDFLT 2826
            FNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQDFLT
Sbjct: 483  FNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQDFLT 542

Query: 2825 SSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSILVRPDAN 2646
            SSFLITRKD FYDRAAFSL+CSYMGDGMD IDLPTPA++KP+ELWTGKQLFS+L+RP A+
Sbjct: 543  SSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPALLKPIELWTGKQLFSVLLRPHAS 602

Query: 2645 VRVFLNLTVREKNYTKLLVNGR-----EIEALCPNDGFVYFRNSELISGQLGKATLGNGN 2481
            VRV+LNL V+E+NY+K ++        E+E +CP+DGFVY RNSELI GQLGKATLGNGN
Sbjct: 603  VRVYLNLIVKERNYSKKIIKRIGNKEIEVETMCPDDGFVYIRNSELICGQLGKATLGNGN 662

Query: 2480 KDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQELILE 2301
            KDGLY VLLRDY  HAAAACMNRLAKLSARWIGNHGFSIGIDDVQP KRL+D+K   I  
Sbjct: 663  KDGLYSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGKRLNDEKALTISG 722

Query: 2300 GYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNSPLI 2121
             Y KCDE+I  +NEG L P+PG +AAQTLEA ++ ILN IRD TGK+CM+ELHWRNSPLI
Sbjct: 723  DYKKCDEEIQTFNEGKLKPKPGYDAAQTLEANVTAILNNIRDKTGKVCMKELHWRNSPLI 782

Query: 2120 MSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVANSFY 1941
            MSQCGSKGS INISQMIACVGQQSVGGRRAP+GFIDRSLPHFHR  KTP AKGFVANSFY
Sbjct: 783  MSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAKGFVANSFY 842

Query: 1940 SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGCIVQ 1761
            SGL+ATEFFFHTM GREGLVDTAVKTA+TGYMSRRL+KA+EDL +HYD+ VRNASGCIVQ
Sbjct: 843  SGLTATEFFFHTMAGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTVRNASGCIVQ 902

Query: 1760 FRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRLSQQDM 1581
            F YGDD MDPA MEGK+G PLNF+RL +K KATCP  E + L    + +++E +L++ D 
Sbjct: 903  FIYGDDGMDPACMEGKSGFPLNFDRLLMKVKATCPPIEQKCLHVGSIMQMLEEQLAKHD- 961

Query: 1580 TPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVLHISGVTAR 1401
             P G CS AFK SLK FL      L R  +   L+ + A  +  E +EK+   ISG++ R
Sbjct: 962  -PAGVCSEAFKKSLKGFLKSQTNELDRVMK---LVNNCA--QKSEILEKVGHKISGISDR 1015

Query: 1400 QLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1221
            QLEVF+ TCISRY  K IE GTAIGAIG  SIGEPGTQMTLKTFHFAGVASMNITQGVPR
Sbjct: 1016 QLEVFVSTCISRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPR 1075

Query: 1220 IKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVMTNRSAAIV 1041
            IKEIINAAK+ISTPVITA LE DDN N+A++V+GRIEKT L  VAK++K V+T+RSA++V
Sbjct: 1076 IKEIINAAKRISTPVITAELEFDDNPNIAQIVKGRIEKTVLGQVAKSIKIVITSRSASVV 1135

Query: 1040 ITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEVDRSKIHFN 861
            ITLDM++I DA+L IDAN+V+ESIL+TPKIKLK++H+KVL+ +KLE++P   DRS+IHF 
Sbjct: 1136 ITLDMEIILDAELYIDANIVKESILQTPKIKLKEQHVKVLDGRKLEVVP-PADRSQIHFE 1194

Query: 860  LNYLKSILPTVIVKGIKTIER-VIIKKEEDKKTQMSK-----CKLLVEGTGLLDVMGTEG 699
            L+ LK++LP V+VKGIKT+ER V+  K ++KK Q  +      +LLVEGTGL  VMG EG
Sbjct: 1195 LHSLKNLLPLVVVKGIKTVERTVVYDKNKEKKNQKEEETTKHFQLLVEGTGLQAVMGIEG 1254

Query: 698  VDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADVMTFRGEV 519
            +DGR T SNH++E+ Q LGIEAARKCII+EI +TM+ HGM+ID RHMMLLADVMTFRGEV
Sbjct: 1255 IDGRRTWSNHVMEMEQILGIEAARKCIIDEIAQTMEHHGMTIDRRHMMLLADVMTFRGEV 1314

Query: 518  LGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPVQIGTGLF 339
            LGI RFGIQ MDKSILMLASFE+TADHLFNA+VNGR D IEGV+E IIMG+P+QIGTG+ 
Sbjct: 1315 LGITRFGIQKMDKSILMLASFERTADHLFNAAVNGRDDKIEGVTECIIMGIPMQIGTGIL 1374

Query: 338  KVKQRVDVPSDLCYGPDPIL 279
            KV QRVD P  L YGPDP+L
Sbjct: 1375 KVIQRVDPPPMLRYGPDPVL 1394


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like isoform
            X1 [Citrus sinensis] gi|568870034|ref|XP_006488217.1|
            PREDICTED: DNA-directed RNA polymerase III subunit
            rpc1-like isoform X2 [Citrus sinensis]
          Length = 1404

 Score = 2004 bits (5192), Expect = 0.0
 Identities = 1012/1407 (71%), Positives = 1170/1407 (83%), Gaps = 17/1407 (1%)
 Frame = -2

Query: 4448 RDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENG 4269
            + ++QSI FTKQ +IEDVGPR+++S+QF+ +S SEI K AEVQV+KGQYY SNR PIE G
Sbjct: 6    QQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGG 65

Query: 4268 LLDPRMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSR 4089
            LLDPRMGP NK+  CATCHG ++ CPGHYGYL LALPVYNVGY+S+I+DILKCICK CSR
Sbjct: 66   LLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILDILKCICKYCSR 125

Query: 4088 ILLEDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS---NKAIKCYRCGYVNGKVKKST 3918
            +LLE++  +  LKKMR+PKM+AL+KT LMK IVK  S   +KA+KC RCGY+NG VKK+ 
Sbjct: 126  LLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRCGYINGMVKKAV 185

Query: 3917 ASQGVKIFHDRSRLFDGLEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCE 3738
            A  G  I HDRS++ + L+++ SAI+H K+SK +++++ +++NP  V FLFKRM D DCE
Sbjct: 186  AVLG--IIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPVNVLFLFKRMTDTDCE 243

Query: 3737 LLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELLEA 3558
            +LYLS+RPEKL++ NIAVPPI IRPSVI DG +SNENDITERLKR++Q NASLQQEL+EA
Sbjct: 244  VLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKRIIQTNASLQQELVEA 303

Query: 3557 NCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGKR 3381
            N A + L+GW+ LQVEVAQYINSDVRG PF+MQVA+P+ GFVQRLKGKQGRFRGNLSGKR
Sbjct: 304  NSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRLKGKQGRFRGNLSGKR 363

Query: 3380 VEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARM 3201
            VEYTGRTVISPDPNLKITEVAIPI MARILTYPERVS HNIEKLRQC+ NGPDKYPGARM
Sbjct: 364  VEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLRQCIQNGPDKYPGARM 423

Query: 3200 LRRADGSQWNL-NVARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVM 3024
            +R  DG+   L    R + A ELK G IVDRHLEDGD+VLFNRQPSLHRMSIMCHRAR+M
Sbjct: 424  IRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIM 483

Query: 3023 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 2844
            PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+LLMGVQNNLCTPKNGEILVAS
Sbjct: 484  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAS 543

Query: 2843 TQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSIL 2664
            TQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD +DLPTPA++KPVELWTGKQLFS+L
Sbjct: 544  TQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAILKPVELWTGKQLFSVL 603

Query: 2663 VRPDANVRVFLNLTVREKNYTKLLVNGR-----EIEALCPNDGFVYFRNSELISGQLGKA 2499
            +RP AN+RV++NLTV+EK Y+  L+         IE +CPNDGFVYFRNSELISGQLGKA
Sbjct: 604  IRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFVYFRNSELISGQLGKA 663

Query: 2498 TLGNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQK 2319
            TLGNGNKDGLY VLLRDY  HA + CMNRLAKLSARWIGNHGFSIGIDDVQP K L D+K
Sbjct: 664  TLGNGNKDGLYSVLLRDYGAHATSGCMNRLAKLSARWIGNHGFSIGIDDVQPKKELSDKK 723

Query: 2318 QELILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHW 2139
             +LI E Y  C+ KI  YNEG L  +PGC+AAQTLEA I+ ILN IR+  GK CM  L W
Sbjct: 724  GKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNRIREDAGKACMGSLPW 783

Query: 2138 RNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGF 1959
            RNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSLPHF R  K P AKGF
Sbjct: 784  RNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKAKEPAAKGF 843

Query: 1958 VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNA 1779
            VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KA+EDL + YD++VRNA
Sbjct: 844  VANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIQYDNSVRNA 903

Query: 1778 SGCIVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESR 1599
             GCIVQF YGDD MDPANMEGK+G PLNF+RL +K KATCP      LSP++VSEIVE +
Sbjct: 904  GGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQRYLSPQQVSEIVEKQ 963

Query: 1598 LSQQDMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVLHI 1419
            L+      +  CS AF  SL+ F +     L    ++   +E +   +  + +E++    
Sbjct: 964  LAAYG---KESCSEAFLNSLRKFFEGQQDKL---DKKIKFVEDIGWDDKSQILEEVTHKT 1017

Query: 1418 SGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASMNI 1239
            SG+T +QLEVF+ TC SRYH+K++E GTAIGAIG  SIGEPGTQMTLKTFHFAGVASMNI
Sbjct: 1018 SGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNI 1077

Query: 1238 TQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVMTN 1059
            TQGVPRIKEIIN AK+ISTP+ITA LEC+DN N ARVV+GRIEKT L  VAK++K VMT+
Sbjct: 1078 TQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKTLLGQVAKSIKIVMTS 1137

Query: 1058 RSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEVDR 879
            R A+IVI LDM+ IQDA L I+A++V+ESI++TPKIKLKQ+HIKVL+ +KLEI P  VD+
Sbjct: 1138 RLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKVLDFRKLEIFP-PVDK 1196

Query: 878  SKIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQM------SKCKLLVEGTGLLD 717
            SKIHF L  LK++LP VIVKGIKT+ERV+I ++E +K ++       K +LLVEGTGL  
Sbjct: 1197 SKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGEKKKYRLLVEGTGLQA 1256

Query: 716  VMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADVM 537
            VMG EG+DG  T SNHI EV QTLGIEAAR CII+EI ETMK+HGMSID RHMMLLAD+M
Sbjct: 1257 VMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHGMSIDKRHMMLLADLM 1316

Query: 536  TFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPVQ 357
            TFRGEVLGI RFGIQ MDKS+LMLASFEKTADHLFNASVNGR D IEGVSE IIMG+P+ 
Sbjct: 1317 TFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDRIEGVSECIIMGIPMP 1376

Query: 356  IGTGLFKVKQRVDVPSDLCYG-PDPIL 279
            +GTG+ K++QR  VP  L YG PDPI+
Sbjct: 1377 LGTGILKIRQRDAVPPMLKYGAPDPIM 1403


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Vitis
            vinifera]
          Length = 1383

 Score = 1988 bits (5149), Expect = 0.0
 Identities = 1010/1393 (72%), Positives = 1162/1393 (83%), Gaps = 9/1393 (0%)
 Frame = -2

Query: 4430 IVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENGLLDPRM 4251
            I FTK+ +IEDVGPR+++S++F   S SEISK AEVQVW+G YYD+NRKPIENGLLDPRM
Sbjct: 5    IQFTKEPYIEDVGPRKIESIRFALFSESEISKAAEVQVWRGVYYDANRKPIENGLLDPRM 64

Query: 4250 GPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSRILLEDE 4071
            GP NKN  CATC G++ +CPGH GYL LALPVYNVGY+S+IVDILKCICK+CSR+LL+++
Sbjct: 65   GPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVDILKCICKSCSRVLLDEK 124

Query: 4070 RRQKLLKKMRSPKMDALKKTRLMKDIVKDL-----SNKAIKCYRCGYVNGKVKKSTASQG 3906
              +  LKKMRS KM+ALKK  LMK IV+       S KA+KC RCGY+NG VKK+ +  G
Sbjct: 125  ASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCSRCGYMNGIVKKAVSVLG 184

Query: 3905 VKIFHDRSRLFDG-LEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCELLY 3729
              I HDRS++ DG LE+  SAISH K+SK S  + + ++NP  V  LFKRM+DEDC+LL 
Sbjct: 185  --IIHDRSKIADGSLEECSSAISHTKESKASFSVVD-ILNPVKVLSLFKRMMDEDCDLLN 241

Query: 3728 LSDRPEKLMMVNIAVPPIPIRPSVIADGD-RSNENDITERLKRVVQVNASLQQELLEANC 3552
            L++RPEKL++ NI VPPI IRPSV  DG  +SNEND+TERLKR++Q NASL QEL +   
Sbjct: 242  LAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLKRIIQANASLHQELQDTGS 301

Query: 3551 AAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGKRVE 3375
             ++ L+GWD LQ+EVAQYINSDVRG P AMQ A+P+ GFVQRLKGKQGRFRGNLSGKRVE
Sbjct: 302  TSKCLAGWDYLQIEVAQYINSDVRGVPLAMQAARPLSGFVQRLKGKQGRFRGNLSGKRVE 361

Query: 3374 YTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARMLR 3195
            YTGRTVISPDPNLKITEVAIPI MA+IL+YPERVS+HNIEKLRQC+ NGP KYPGA+++R
Sbjct: 362  YTGRTVISPDPNLKITEVAIPILMAKILSYPERVSHHNIEKLRQCILNGPFKYPGAKLIR 421

Query: 3194 RADGSQWNLNVA-RKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVMPW 3018
              DGS  +L  + RKR ADELKYG IV+RHLEDGD+VLFNRQPSLHRMSIMCHRAR+MPW
Sbjct: 422  YPDGSMRSLMFSGRKRFADELKYGYIVERHLEDGDVVLFNRQPSLHRMSIMCHRARIMPW 481

Query: 3017 RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVASTQ 2838
            RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPKNGEILVASTQ
Sbjct: 482  RTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVASTQ 541

Query: 2837 DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSILVR 2658
            DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMD +DLPTPA+IKPVELWTGKQLF++L+R
Sbjct: 542  DFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDLVDLPTPAIIKPVELWTGKQLFNVLLR 601

Query: 2657 PDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATLGNGNK 2478
            P ANVRV+LNLTV EK Y K     R  E +CP+DGFVYFRNSELISGQLGKATLGNGNK
Sbjct: 602  PHANVRVYLNLTVMEKTYNKR----RGKETMCPSDGFVYFRNSELISGQLGKATLGNGNK 657

Query: 2477 DGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQELILEG 2298
            DGL+ VLLRDY  HAAAACMNRLAKLSARWIGNHGFSIGIDDVQP   L+DQK + I EG
Sbjct: 658  DGLFSVLLRDYNAHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPGGLLNDQKSKRIEEG 717

Query: 2297 YGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNSPLIM 2118
            Y  C E I  YN+G L  +PGCNAAQTLEA+I+ +LN IR+ T  +CM+ELHWRNSPLIM
Sbjct: 718  YENCHELIQQYNKGKLKLQPGCNAAQTLEAEITGVLNKIRETTANVCMEELHWRNSPLIM 777

Query: 2117 SQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVANSFYS 1938
            SQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDR+LPHF R  KTP AKGFVA+SFY+
Sbjct: 778  SQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRTLPHFPRKSKTPDAKGFVASSFYT 837

Query: 1937 GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGCIVQF 1758
            GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKA+EDL + YD+ VRNA+G IVQF
Sbjct: 838  GLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSIQYDETVRNANGSIVQF 897

Query: 1757 RYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRLSQQDMT 1578
             YGDD MDPA MEGK+G PLNF RLFLK KATCPAGEN  LS  ++ E V+ RL + + +
Sbjct: 898  LYGDDGMDPARMEGKDGFPLNFNRLFLKVKATCPAGENASLSALQIEETVK-RLKEHNTS 956

Query: 1577 PEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVLHISGVTARQ 1398
             E GCS AFKT+L  FL+E     K T+E  GL       EN +  EK   +ISG+T++Q
Sbjct: 957  AE-GCSDAFKTNLSGFLEECKEKFKNTREALGLHGEHVGEENLDIQEKFAKNISGITSKQ 1015

Query: 1397 LEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASMNITQGVPRI 1218
            L+VFLDTCISRY +K+IE GTAIGAIG HSIGEPGTQMTLKTFHFAGVASMN+T GVPRI
Sbjct: 1016 LQVFLDTCISRYQLKRIEAGTAIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRI 1075

Query: 1217 KEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVMTNRSAAIVI 1038
            KEIIN AK+ISTP+ITA LEC++NV  AR+V+GRIE+T L  VAK++K V+T+R A I +
Sbjct: 1076 KEIINGAKRISTPIITAALECNNNVKTARMVKGRIERTTLGQVAKSIKIVLTSRLALIAV 1135

Query: 1037 TLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEVDRSKIHFNL 858
             LDM+ IQ +QLSID+N+V+ESIL+  +IKLKQ+HIKVL+  KLE+ PQ  DRS IHF L
Sbjct: 1136 ALDMEGIQASQLSIDSNIVRESILRNRRIKLKQQHIKVLDAGKLEVHPQG-DRSTIHFEL 1194

Query: 857  NYLKSILPTVIVKGIKTIERVIIKKEEDKKTQMSKCKLLVEGTGLLDVMGTEGVDGRNTT 678
            + LK++LPTV+VKGI+T+ER +I K  D K    K  LLVEGTGL  VMGTEGV GR TT
Sbjct: 1195 HALKNLLPTVVVKGIETVERAVINK--DNKV---KYNLLVEGTGLQTVMGTEGVIGRETT 1249

Query: 677  SNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADVMTFRGEVLGINRFG 498
            SNHIIEV QTLGIEAARKCIINEI+ TM SHGMSID RHMMLLAD+MTFRGEVLGI RFG
Sbjct: 1250 SNHIIEVQQTLGIEAARKCIINEIQYTMASHGMSIDIRHMMLLADLMTFRGEVLGITRFG 1309

Query: 497  IQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPVQIGTGLFKVKQRVD 318
            IQ MDKS+LMLASFEKTADHLFNASV+GR D IEGVSE IIMG+P+Q+GTG+ KV+QR+ 
Sbjct: 1310 IQKMDKSVLMLASFEKTADHLFNASVSGRDDKIEGVSECIIMGIPMQLGTGILKVRQRLQ 1369

Query: 317  VPSDLCYGPDPIL 279
               +L YG DPI+
Sbjct: 1370 QVPELSYGLDPII 1382


>ref|XP_012471450.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X1
            [Gossypium raimondii] gi|763752836|gb|KJB20224.1|
            hypothetical protein B456_003G139100 [Gossypium
            raimondii]
          Length = 1398

 Score = 1975 bits (5116), Expect = 0.0
 Identities = 999/1407 (71%), Positives = 1166/1407 (82%), Gaps = 17/1407 (1%)
 Frame = -2

Query: 4448 RDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENG 4269
            + ++Q IVFTK+ +IEDVGPRR+KS++F+  S SEI+K AEVQV+KG YYD   +PIE G
Sbjct: 2    QQRSQDIVFTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDLQSRPIEGG 61

Query: 4268 LLDPRMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSR 4089
            LLDPRMGPPNK+ KCATC GS+ +CPGHYGYL L LPVYNVGY+S+I+DILKCICK+CSR
Sbjct: 62   LLDPRMGPPNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCSR 121

Query: 4088 ILLEDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS----NKAIKCYRCGYVNGKVKKS 3921
            ILL+D+  +  LKKMR+PK + LKK  +MK +VK  +     KA+KC RCGY+NG VKK+
Sbjct: 122  ILLDDKLAKDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVKKA 181

Query: 3920 TASQGVKIFHDRSRLFDG-LEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDED 3744
                GV  FHDRS++ D  LE+ KSAISH K+SK S++ S+ V+NP  V  LFKRM D D
Sbjct: 182  PKMIGV--FHDRSKVNDNSLEELKSAISHTKESKSSINTSS-VLNPVKVLSLFKRMTDVD 238

Query: 3743 CELLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELL 3564
            CELLYLSDRPEK ++ NIAVPP  IRPSV  DG +SNENDITERLKR++Q N+SL+Q+L+
Sbjct: 239  CELLYLSDRPEKFIITNIAVPPTAIRPSVPVDGSQSNENDITERLKRIIQANSSLRQQLV 298

Query: 3563 EANCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSG 3387
            ++N A   L+GWD LQV+VAQYINSDVRG P  MQ A+P+ GF+QRLKGKQGRFRGNLSG
Sbjct: 299  DSNAAFHCLNGWDLLQVDVAQYINSDVRGVPTEMQPARPLSGFLQRLKGKQGRFRGNLSG 358

Query: 3386 KRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGA 3207
            KRVE+TGRTVISPDPNLKITEVAIPIHMARIL+YPERVS HNIEKLRQCV NGP KYPGA
Sbjct: 359  KRVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSSHNIEKLRQCVRNGPSKYPGA 418

Query: 3206 RMLRRADGS-QWNLNVARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR 3030
              +R  DGS +  +   RKR ADELK+G IVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR
Sbjct: 419  VKVRYPDGSARLLIGDYRKRLADELKFGCIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR 478

Query: 3029 VMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILV 2850
            +MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPKNGE+LV
Sbjct: 479  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEVLV 538

Query: 2849 ASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFS 2670
            ASTQDFLTSSFLITR+DTFYDRA FSL+CSYMGD MD IDLPTP ++KPVELWTGKQLF+
Sbjct: 539  ASTQDFLTSSFLITRRDTFYDRATFSLICSYMGDAMDLIDLPTPTLLKPVELWTGKQLFN 598

Query: 2669 ILVRPDANVRVFLNLTVREKNYTKLLVNGR-----EIEALCPNDGFVYFRNSELISGQLG 2505
            +L+RP A+VRV+LNLTV+E+NY++ +         E+E +CPNDGFVY RNSEL+ GQLG
Sbjct: 599  VLLRPHASVRVYLNLTVKERNYSRKIAKRIGDKEIEVETMCPNDGFVYIRNSELLCGQLG 658

Query: 2504 KATLGNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHD 2325
            KATLGNGNKDGLY +LLRDY  HAAA CMNRLAK+SARWIGNHGFSIGIDDVQP KRL+D
Sbjct: 659  KATLGNGNKDGLYSILLRDYNAHAAATCMNRLAKMSARWIGNHGFSIGIDDVQPGKRLND 718

Query: 2324 QKQELILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQEL 2145
             K   +   Y KCDE+I ++NEG L  +PGC+AAQTLEA I+++LN IRD TGK+CM+EL
Sbjct: 719  AKGVTLSGNYKKCDEQIQMFNEGKLQLKPGCDAAQTLEANITEVLNKIRDETGKVCMREL 778

Query: 2144 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAK 1965
            HWRNSPLIMSQCGSKGS INISQMIACVGQQSVGGRRAP+GFIDRSLPHFHR  KTP AK
Sbjct: 779  HWRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAK 838

Query: 1964 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVR 1785
            GFVANSFYSGL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KA+EDL +HYD+  R
Sbjct: 839  GFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTCR 898

Query: 1784 NASGCIVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVE 1605
            NASGCIVQF YGDD MDPA+MEGK+G PLNF+RL +K KATCP  + + L  + + +++E
Sbjct: 899  NASGCIVQFIYGDDGMDPASMEGKSGFPLNFDRLLMKVKATCPPVDQKYLPADAIPQMLE 958

Query: 1604 SRLSQQDMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVL 1425
             ++ + D  P+G CS AFK SLK FL+     LKR  +   L+ + A  +  E +E +  
Sbjct: 959  EQVVKHD--PDGVCSEAFKKSLKGFLEGQKNELKRVMQ---LVSNSA--QKSEILEDVSH 1011

Query: 1424 HISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASM 1245
             I G+T RQLEVF+  CI RY  K IE GTAIGAIG  SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1012 KICGITDRQLEVFIRICIGRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 1071

Query: 1244 NITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVM 1065
            NITQGVPRIKEIINAAKKISTP+ITA LE D NVNVAR+V+GRIEKT L  VAK++K VM
Sbjct: 1072 NITQGVPRIKEIINAAKKISTPIITAELEFDSNVNVARMVKGRIEKTVLGQVAKSIKIVM 1131

Query: 1064 TNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEV 885
            T+R A++VI+LDM+ IQDAQL IDANVV+ESIL+TPK+KLK++H+KVL+VKKLE++P   
Sbjct: 1132 TSRLASVVISLDMERIQDAQLHIDANVVKESILQTPKLKLKEQHVKVLDVKKLEVVP-PA 1190

Query: 884  DRSKIHFNLNYLKSILPTVIVKGIKTIERVII-KKEEDKKTQMSKCK----LLVEGTGLL 720
            DRS+IHF L+ LK++LP V+VKGIKT+ERV+I +K++D K+Q  + K    L VEG GL 
Sbjct: 1191 DRSRIHFELHSLKNLLPLVVVKGIKTVERVVIAEKKKDNKSQNKEAKKLYQLFVEGMGLQ 1250

Query: 719  DVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADV 540
             VMG EG+DGR T SNH++E+ Q LGIEAAR CIINEI  TM SHGMSID RHMMLL DV
Sbjct: 1251 TVMGVEGIDGRKTMSNHVMEMLQILGIEAARSCIINEIAATMASHGMSIDIRHMMLLGDV 1310

Query: 539  MTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPV 360
            MTFRGEVLGI RFGIQ MDKSILMLASFEKT DHLFNASVNGR D IEGV+E IIMG+P+
Sbjct: 1311 MTFRGEVLGITRFGIQKMDKSILMLASFEKTGDHLFNASVNGRDDKIEGVTECIIMGIPM 1370

Query: 359  QIGTGLFKVKQRVDVPSDLCYGPDPIL 279
            Q+GTG+ KV QRVD    L YG DP+L
Sbjct: 1371 QLGTGILKVMQRVDPLPLLQYGADPVL 1397


>ref|XP_012471451.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 isoform X2
            [Gossypium raimondii]
          Length = 1395

 Score = 1967 bits (5097), Expect = 0.0
 Identities = 998/1407 (70%), Positives = 1164/1407 (82%), Gaps = 17/1407 (1%)
 Frame = -2

Query: 4448 RDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENG 4269
            + ++Q IVFTK+ +IEDVGPRR+KS++F+  S SEI+K AEVQV+KG YYD   +PIE G
Sbjct: 2    QQRSQDIVFTKRPYIEDVGPRRIKSIKFSMFSDSEIAKAAEVQVYKGVYYDLQSRPIEGG 61

Query: 4268 LLDPRMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSR 4089
            LLDPRMGPPNK+ KCATC GS+ +CPGHYGYL L LPVYNVGY+S+I+DILKCICK+CSR
Sbjct: 62   LLDPRMGPPNKSGKCATCDGSFGDCPGHYGYLPLVLPVYNVGYLSTILDILKCICKSCSR 121

Query: 4088 ILLEDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS----NKAIKCYRCGYVNGKVKKS 3921
            ILL+D+  +  LKKMR+PK + LKK  +MK +VK  +     KA+KC RCGY+NG VKK+
Sbjct: 122  ILLDDKLAKDYLKKMRAPKTEPLKKAEIMKSVVKKCTAMAGGKAVKCSRCGYLNGTVKKA 181

Query: 3920 TASQGVKIFHDRSRLFDG-LEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDED 3744
                GV  FHDRS++ D  LE+ KSAISH K+SK S++ S+ V+NP  V  LFKRM D D
Sbjct: 182  PKMIGV--FHDRSKVNDNSLEELKSAISHTKESKSSINTSS-VLNPVKVLSLFKRMTDVD 238

Query: 3743 CELLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELL 3564
            CELLYLSDRPEK ++ NIAVPP  IRPSV  DG   NENDITERLKR++Q N+SL+Q+L+
Sbjct: 239  CELLYLSDRPEKFIITNIAVPPTAIRPSVPVDG---NENDITERLKRIIQANSSLRQQLV 295

Query: 3563 EANCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSG 3387
            ++N A   L+GWD LQV+VAQYINSDVRG P  MQ A+P+ GF+QRLKGKQGRFRGNLSG
Sbjct: 296  DSNAAFHCLNGWDLLQVDVAQYINSDVRGVPTEMQPARPLSGFLQRLKGKQGRFRGNLSG 355

Query: 3386 KRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGA 3207
            KRVE+TGRTVISPDPNLKITEVAIPIHMARIL+YPERVS HNIEKLRQCV NGP KYPGA
Sbjct: 356  KRVEFTGRTVISPDPNLKITEVAIPIHMARILSYPERVSSHNIEKLRQCVRNGPSKYPGA 415

Query: 3206 RMLRRADGS-QWNLNVARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR 3030
              +R  DGS +  +   RKR ADELK+G IVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR
Sbjct: 416  VKVRYPDGSARLLIGDYRKRLADELKFGCIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR 475

Query: 3029 VMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILV 2850
            +MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPKNGE+LV
Sbjct: 476  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEVLV 535

Query: 2849 ASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFS 2670
            ASTQDFLTSSFLITR+DTFYDRA FSL+CSYMGD MD IDLPTP ++KPVELWTGKQLF+
Sbjct: 536  ASTQDFLTSSFLITRRDTFYDRATFSLICSYMGDAMDLIDLPTPTLLKPVELWTGKQLFN 595

Query: 2669 ILVRPDANVRVFLNLTVREKNYTKLLVNGR-----EIEALCPNDGFVYFRNSELISGQLG 2505
            +L+RP A+VRV+LNLTV+E+NY++ +         E+E +CPNDGFVY RNSEL+ GQLG
Sbjct: 596  VLLRPHASVRVYLNLTVKERNYSRKIAKRIGDKEIEVETMCPNDGFVYIRNSELLCGQLG 655

Query: 2504 KATLGNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHD 2325
            KATLGNGNKDGLY +LLRDY  HAAA CMNRLAK+SARWIGNHGFSIGIDDVQP KRL+D
Sbjct: 656  KATLGNGNKDGLYSILLRDYNAHAAATCMNRLAKMSARWIGNHGFSIGIDDVQPGKRLND 715

Query: 2324 QKQELILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQEL 2145
             K   +   Y KCDE+I ++NEG L  +PGC+AAQTLEA I+++LN IRD TGK+CM+EL
Sbjct: 716  AKGVTLSGNYKKCDEQIQMFNEGKLQLKPGCDAAQTLEANITEVLNKIRDETGKVCMREL 775

Query: 2144 HWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAK 1965
            HWRNSPLIMSQCGSKGS INISQMIACVGQQSVGGRRAP+GFIDRSLPHFHR  KTP AK
Sbjct: 776  HWRNSPLIMSQCGSKGSAINISQMIACVGQQSVGGRRAPNGFIDRSLPHFHRGSKTPAAK 835

Query: 1964 GFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVR 1785
            GFVANSFYSGL+ATEFFFHTMGGREGLVDTAVKTA+TGYMSRRL+KA+EDL +HYD+  R
Sbjct: 836  GFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTAETGYMSRRLIKALEDLSIHYDNTCR 895

Query: 1784 NASGCIVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVE 1605
            NASGCIVQF YGDD MDPA+MEGK+G PLNF+RL +K KATCP  + + L  + + +++E
Sbjct: 896  NASGCIVQFIYGDDGMDPASMEGKSGFPLNFDRLLMKVKATCPPVDQKYLPADAIPQMLE 955

Query: 1604 SRLSQQDMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVL 1425
             ++ + D  P+G CS AFK SLK FL+     LKR  +   L+ + A  +  E +E +  
Sbjct: 956  EQVVKHD--PDGVCSEAFKKSLKGFLEGQKNELKRVMQ---LVSNSA--QKSEILEDVSH 1008

Query: 1424 HISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASM 1245
             I G+T RQLEVF+  CI RY  K IE GTAIGAIG  SIGEPGTQMTLKTFHFAGVASM
Sbjct: 1009 KICGITDRQLEVFIRICIGRYRSKVIEAGTAIGAIGAQSIGEPGTQMTLKTFHFAGVASM 1068

Query: 1244 NITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVM 1065
            NITQGVPRIKEIINAAKKISTP+ITA LE D NVNVAR+V+GRIEKT L  VAK++K VM
Sbjct: 1069 NITQGVPRIKEIINAAKKISTPIITAELEFDSNVNVARMVKGRIEKTVLGQVAKSIKIVM 1128

Query: 1064 TNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEV 885
            T+R A++VI+LDM+ IQDAQL IDANVV+ESIL+TPK+KLK++H+KVL+VKKLE++P   
Sbjct: 1129 TSRLASVVISLDMERIQDAQLHIDANVVKESILQTPKLKLKEQHVKVLDVKKLEVVP-PA 1187

Query: 884  DRSKIHFNLNYLKSILPTVIVKGIKTIERVII-KKEEDKKTQMSKCK----LLVEGTGLL 720
            DRS+IHF L+ LK++LP V+VKGIKT+ERV+I +K++D K+Q  + K    L VEG GL 
Sbjct: 1188 DRSRIHFELHSLKNLLPLVVVKGIKTVERVVIAEKKKDNKSQNKEAKKLYQLFVEGMGLQ 1247

Query: 719  DVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADV 540
             VMG EG+DGR T SNH++E+ Q LGIEAAR CIINEI  TM SHGMSID RHMMLL DV
Sbjct: 1248 TVMGVEGIDGRKTMSNHVMEMLQILGIEAARSCIINEIAATMASHGMSIDIRHMMLLGDV 1307

Query: 539  MTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPV 360
            MTFRGEVLGI RFGIQ MDKSILMLASFEKT DHLFNASVNGR D IEGV+E IIMG+P+
Sbjct: 1308 MTFRGEVLGITRFGIQKMDKSILMLASFEKTGDHLFNASVNGRDDKIEGVTECIIMGIPM 1367

Query: 359  QIGTGLFKVKQRVDVPSDLCYGPDPIL 279
            Q+GTG+ KV QRVD    L YG DP+L
Sbjct: 1368 QLGTGILKVMQRVDPLPLLQYGADPVL 1394


>ref|XP_006424701.1| hypothetical protein CICLE_v10027681mg [Citrus clementina]
            gi|557526635|gb|ESR37941.1| hypothetical protein
            CICLE_v10027681mg [Citrus clementina]
          Length = 1397

 Score = 1949 bits (5048), Expect = 0.0
 Identities = 996/1422 (70%), Positives = 1153/1422 (81%), Gaps = 32/1422 (2%)
 Frame = -2

Query: 4448 RDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENG 4269
            + ++QSI FTKQ +IEDVGPR+++S+QF+ +S SEI K AEVQV+KGQYY SNR PIE G
Sbjct: 6    QQKSQSIAFTKQPYIEDVGPRKIESIQFSMMSDSEIMKAAEVQVYKGQYYSSNRVPIEGG 65

Query: 4268 LLDPRM---------------GPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYIS 4134
            LLDPRM               GP NK+  CATCHG ++ CPGHYGYL LALPVYNVGY+S
Sbjct: 66   LLDPRMEKIIFLQRLFFHGFQGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLS 125

Query: 4133 SIVDILKCICKNCSRILLEDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS---NKAIK 3963
            +I+DILKCICK CSR+LLE++  +  LKKMR+PKM+AL+KT LMK IVK  S   +KA+K
Sbjct: 126  TILDILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVK 185

Query: 3962 CYRCGYVNGKVKKSTASQGVKIFHDRSRLFDGLEDYKSAISHIKDSKISLDMSNHVINPA 3783
            C RCGY+NG VKK+ A  G  I HDRS++ + L+++ SAI+H K+SK +++++ +++NP 
Sbjct: 186  CPRCGYINGMVKKAVAVLG--IIHDRSKVTESLQEFASAITHTKESKAAVNVATYILNPV 243

Query: 3782 MVHFLFKRMLDEDCELLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKR 3603
             V FLFKRM D DCE+LYLS+RPEKL++ NIAVPPI IRPSVI DG +SNENDITERLKR
Sbjct: 244  NVLFLFKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMDGSQSNENDITERLKR 303

Query: 3602 VVQVNASLQQELLEANCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRL 3426
            ++Q NASLQQEL+EAN A + L+GW+ LQVEVAQYINSDVRG PF+MQVA+P+ GFVQRL
Sbjct: 304  IIQTNASLQQELVEANSAFKSLAGWETLQVEVAQYINSDVRGVPFSMQVARPLSGFVQRL 363

Query: 3425 KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLR 3246
            KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPI MARILTYPERVS HNIEKLR
Sbjct: 364  KGKQGRFRGNLSGKRVEYTGRTVISPDPNLKITEVAIPIRMARILTYPERVSDHNIEKLR 423

Query: 3245 QCVSNGPDKYPGARMLRRADGSQWNL-NVARKRRADELKYGDIVDRHLEDGDIVLFNRQP 3069
            QC+ NGPDKYPGARM+R  DG+   L    R + A ELK G IVDRHLEDGD+VLFNRQP
Sbjct: 424  QCIQNGPDKYPGARMIRYPDGTARVLYGKFRNQLAVELKSGCIVDRHLEDGDVVLFNRQP 483

Query: 3068 SLHRMSIMCHRARVMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQ 2889
            SLHRMSIMCHRAR+MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+LLMGVQ
Sbjct: 484  SLHRMSIMCHRARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQ 543

Query: 2888 NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVI 2709
            NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMC YMGDGMD +DLPTPA++
Sbjct: 544  NNLCTPKNGEILVASTQDFLTSSFLITRKDTFYDRAAFSLMCCYMGDGMDRVDLPTPAIL 603

Query: 2708 KPVELWTGKQLFSILVRPDANVRVFLNLTVREKNYTKLLVNGR-----EIEALCPNDGFV 2544
            KPVELWTGKQLFS+L+RP AN+RV++NLTV+EK Y+  L+         IE +CPNDGFV
Sbjct: 604  KPVELWTGKQLFSVLIRPHANMRVYVNLTVKEKTYSNKLIRTEGDEEIRIETMCPNDGFV 663

Query: 2543 YFRNSELISGQLGKATLGNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSI 2364
            YFRNSELISGQLGKATLG                      CMNRLAKLSARWIGNHGFSI
Sbjct: 664  YFRNSELISGQLGKATLG----------------------CMNRLAKLSARWIGNHGFSI 701

Query: 2363 GIDDVQPSKRLHDQKQELILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNG 2184
            GIDDVQP K L D+K +LI E Y  C+ KI  YNEG L  +PGC+AAQTLEA I+ ILN 
Sbjct: 702  GIDDVQPKKELSDKKGKLISENYEVCNVKIKEYNEGKLQLKPGCDAAQTLEAVITDILNR 761

Query: 2183 IRDATGKLCMQELHWRNSPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSL 2004
            IR+  GK CM  L WRNSPLIMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GFIDRSL
Sbjct: 762  IREDAGKACMGSLPWRNSPLIMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFIDRSL 821

Query: 2003 PHFHRNQKTPGAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKA 1824
            PHF R  K P AKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KA
Sbjct: 822  PHFPRKAKEPAAKGFVANSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKA 881

Query: 1823 MEDLCVHYDDAVRNASGCIVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGEN 1644
            +EDL + YD++VRNA GCIVQF YGDD MDPANMEGK+G PLNF+RL +K KATCP    
Sbjct: 882  LEDLSIQYDNSVRNAGGCIVQFLYGDDGMDPANMEGKSGEPLNFDRLLMKVKATCPPAGQ 941

Query: 1643 EKLSPEKVSEIVESRLSQQDMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLA 1464
              LSP++VSEIVE +L+      +  CS AF  SL+ F +     L    ++   +E + 
Sbjct: 942  RYLSPQQVSEIVEKQLAAYG---KESCSEAFLNSLRKFFEGQQDKL---DKKIKFVEDIG 995

Query: 1463 AMENFETVEKIVLHISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQM 1284
              +  + +E++    SG+T +QLEVF+ TC SRYH+K++E GTAIGAIG  SIGEPGTQM
Sbjct: 996  WDDKSQILEEVTHKTSGITEKQLEVFIQTCFSRYHVKRVEAGTAIGAIGAQSIGEPGTQM 1055

Query: 1283 TLKTFHFAGVASMNITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKT 1104
            TLKTFHFAGVASMNITQGVPRIKEIIN AK+ISTP+ITA LEC+DN N ARVV+GRIEKT
Sbjct: 1056 TLKTFHFAGVASMNITQGVPRIKEIINGAKRISTPIITAELECNDNENAARVVKGRIEKT 1115

Query: 1103 RLCDVAKTLKTVMTNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKV 924
             L  VAK++K VMT+R A+IVI LDM+ IQDA L I+A++V+ESI++TPKIKLKQ+HIKV
Sbjct: 1116 LLGQVAKSIKIVMTSRLASIVIALDMETIQDAHLCINADIVKESIVQTPKIKLKQQHIKV 1175

Query: 923  LEVKKLEILPQEVDRSKIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQM----- 759
            L+ +KLEI P  VD+SKIHF L  LK++LP VIVKGIKT+ERV+I ++E +K ++     
Sbjct: 1176 LDFRKLEIFP-PVDKSKIHFELYSLKNVLPMVIVKGIKTVERVVIAEKEKEKRKVKENGE 1234

Query: 758  -SKCKLLVEGTGLLDVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHG 582
              K +LLVEGTGL  VMG EG+DG  T SNHI EV QTLGIEAAR CII+EI ETMK+HG
Sbjct: 1235 KKKYRLLVEGTGLQAVMGAEGIDGCKTKSNHIFEVQQTLGIEAARICIIDEINETMKAHG 1294

Query: 581  MSIDNRHMMLLADVMTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDN 402
            MSID RHMMLLAD+MTFRGEVLGI RFGIQ MDKS+LMLASFEKTADHLFNASVNGR D 
Sbjct: 1295 MSIDKRHMMLLADLMTFRGEVLGITRFGIQKMDKSVLMLASFEKTADHLFNASVNGRDDR 1354

Query: 401  IEGVSESIIMGMPVQIGTGLFKVKQRVDVPSDLCYG-PDPIL 279
            IEGVSE IIMG+P+ +GTG+ K++QR  VP  L YG PDPI+
Sbjct: 1355 IEGVSECIIMGIPMPLGTGILKIRQRDAVPPMLKYGAPDPIM 1396


>ref|XP_010033188.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
            subunit rpc1 [Eucalyptus grandis]
          Length = 1402

 Score = 1941 bits (5028), Expect = 0.0
 Identities = 980/1407 (69%), Positives = 1151/1407 (81%), Gaps = 22/1407 (1%)
 Frame = -2

Query: 4433 SIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENGLLDPR 4254
            S VFTK+ ++E+VGPRR+KS+ F+  S SEI  +AEVQV+KG YYD  RKP+E GLLDPR
Sbjct: 5    SHVFTKEPYVENVGPRRIKSIHFSMFSASEIGNVAEVQVYKGVYYDGTRKPLEGGLLDPR 64

Query: 4253 MGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSRILLED 4074
            MGP NK+ +C+TCHG + +CPGHYGYL LALPVYNVG++  I+++LK +CK+CSRILL++
Sbjct: 65   MGPANKSCRCSTCHGDFKDCPGHYGYLTLALPVYNVGFLDKILEVLKSLCKSCSRILLDE 124

Query: 4073 ERRQKLLKKMRSPKMDALKKTRLMKDIVKDLSNKAIKCYRCGYVNGKVKKSTASQGVKIF 3894
            E R+K L+K+R PK DAL K  L K  V     K  +C  CGY+NG VKK+  +  +   
Sbjct: 125  ESRRKELEKIRHPKRDALNKAELAKKTVSKC--KPGRCAHCGYINGTVKKAIGA--ISYI 180

Query: 3893 HDRSRLFD-GLEDYKSAISHIKDSKISLDMSNHVINPAM---------VHFLFKRMLDED 3744
            HDRS+  D  LE+ KSAISH K+SK SL +++++INP M         V  LF+RM DED
Sbjct: 181  HDRSKTSDRSLEECKSAISHTKESKGSLSVASNIINPGMFCNIINPRDVLSLFERMSDED 240

Query: 3743 CELLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELL 3564
            CELL ++DRPEK M+  IAVPPI IRPSV+ +G +SNENDITERLKR++QVNASLQQEL 
Sbjct: 241  CELLNIADRPEKFMITTIAVPPIAIRPSVMMEGSQSNENDITERLKRIIQVNASLQQELQ 300

Query: 3563 EANCAARLSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGK 3384
            +      ++ WD LQ EV  YINSDVRG P+  QVAKP+ GF+QRLKGKQGRFRGNLSGK
Sbjct: 301  DMK---NMAAWDHLQAEVGLYINSDVRGVPYPFQVAKPLAGFIQRLKGKQGRFRGNLSGK 357

Query: 3383 RVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGAR 3204
            RVEYTGRTVISPDPNLKITEVAIPI MARILTYPERV+ +NIEKLRQCV NGP KYPGAR
Sbjct: 358  RVEYTGRTVISPDPNLKITEVAIPIQMARILTYPERVNQYNIEKLRQCVRNGPYKYPGAR 417

Query: 3203 MLRRADGSQWNLNVA-RKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARV 3027
            M+R  DG    L  + RKR ADEL +G IVDRHLEDGD+VLFNRQPSLHRMSIMCHRARV
Sbjct: 418  MIRYPDGEMRLLMGSFRKRLADELGFGVIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARV 477

Query: 3026 MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVA 2847
            MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEAR EA++LMGVQNNLCTPKNGEILVA
Sbjct: 478  MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARAEALMLMGVQNNLCTPKNGEILVA 537

Query: 2846 STQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSI 2667
            STQDFLTSSFLITRKD FYDRAAFSL+CSYMGDGMD IDLPTPA+IKP+ELWTGKQ+FS+
Sbjct: 538  STQDFLTSSFLITRKDIFYDRAAFSLICSYMGDGMDLIDLPTPAIIKPIELWTGKQIFSV 597

Query: 2666 LVRPDANVRVFLNLTVREKNYTKLL-VNGREIEALCPNDGFVYFRNSELISGQLGKATLG 2490
            L+RP+A +RVF+NLT++EKNY+K    + RE+E +CPNDGFVYFRNSELISGQLGKATLG
Sbjct: 598  LLRPNARMRVFVNLTLKEKNYSKPKNASERELETMCPNDGFVYFRNSELISGQLGKATLG 657

Query: 2489 NGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQEL 2310
            NGNKDGLY +LLRDY  HAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP   L+++K+E 
Sbjct: 658  NGNKDGLYSILLRDYNAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPDNDLNERKRET 717

Query: 2309 ILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNS 2130
            IL GY  CDEKI LYN+G L  +PGC+AAQTLEA I+ ILN IR+ TG++CM++LHWRNS
Sbjct: 718  ILNGYNSCDEKIELYNKGKLDLQPGCDAAQTLEAVITGILNQIRNETGQVCMKKLHWRNS 777

Query: 2129 PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVAN 1950
            PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHF R  KTP AKGFVAN
Sbjct: 778  PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRQSKTPAAKGFVAN 837

Query: 1949 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGC 1770
            SFYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KA+EDL +HYD+ VRNASGC
Sbjct: 838  SFYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLSIHYDNTVRNASGC 897

Query: 1769 IVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRLSQ 1590
            IVQF YGDD MDPA MEGKNG PLNF+RLF+K KATCP+ E++ LSP ++S ++E +L +
Sbjct: 898  IVQFLYGDDGMDPALMEGKNGFPLNFDRLFMKVKATCPSREHKYLSPVEISALIEQKLPE 957

Query: 1589 QDMTPEGG---CSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVLHI 1419
             + TP+GG    S AFK S+K FL E          +FG     A +EN ETV ++   I
Sbjct: 958  SESTPDGGLSDASKAFKKSVKAFLLEEHEKGSEIIMKFG---EDATVENQETVIRVAQKI 1014

Query: 1418 SGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASMNI 1239
             G+T  QL  F+DTC+SRYH+K+IE G+AIGAIG  SIGEPGTQMTLKTFHFAGVASMN+
Sbjct: 1015 GGITEGQLRAFIDTCMSRYHLKRIEAGSAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNV 1074

Query: 1238 TQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVMTN 1059
            T GVPRIKEIIN AKKI TP+ITA L+ DDNVN+AR+V+ RI+KT L  +AK++KTVMT+
Sbjct: 1075 TLGVPRIKEIINGAKKILTPIITAELDRDDNVNIARMVKARIDKTVLGQIAKSIKTVMTS 1134

Query: 1058 RSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEVDR 879
            R  +IVITLDM+ I+D+QL IDAN V+ESI++TPKIK KQ  I VL+V KLE++P  VDR
Sbjct: 1135 RLGSIVITLDMNRIEDSQLCIDANTVRESIMQTPKIKPKQLQINVLDVTKLEVVPL-VDR 1193

Query: 878  SKIHFNLNYLKSILPTVIVKGIKTIERVIIKK-------EEDKKTQMSKCKLLVEGTGLL 720
             K+HF L+ LK++LP VIVKGIKT+ER ++ K       +E K  +  K  L+VEGTGL 
Sbjct: 1194 GKLHFELHSLKNMLPNVIVKGIKTVERAVVNKGKEKYKDKEGKVKEREKYSLVVEGTGLQ 1253

Query: 719  DVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADV 540
            +VMGTEGVDGR T SNHIIE+ QTLGIEAAR CII EI+  M +HGMSID RHMMLLAD+
Sbjct: 1254 EVMGTEGVDGRKTKSNHIIEIQQTLGIEAARWCIIEEIQFIMSNHGMSIDIRHMMLLADL 1313

Query: 539  MTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPV 360
            MTFRGEVLGI RFGIQ MDKS+LMLASFEKT+DHLF+AS +G+ D IEGVSE IIMG+P+
Sbjct: 1314 MTFRGEVLGITRFGIQKMDKSVLMLASFEKTSDHLFHASASGKADKIEGVSECIIMGVPM 1373

Query: 359  QIGTGLFKVKQRVDVPSDLCYGPDPIL 279
            Q+GTG+ KV QR + P +L Y  DPI+
Sbjct: 1374 QLGTGILKVIQRDEKP-ELTYASDPII 1399


>ref|XP_003539102.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Glycine
            max] gi|947038807|gb|KRG88695.1| hypothetical protein
            GLYMA_U034000 [Glycine max]
          Length = 1391

 Score = 1930 bits (5001), Expect = 0.0
 Identities = 977/1407 (69%), Positives = 1155/1407 (82%), Gaps = 16/1407 (1%)
 Frame = -2

Query: 4451 NRDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIEN 4272
            NR +T+ I FTK+ F+ED GPR++K+M+F+TLS SEISK+AEVQVWKG YYDS +KPI  
Sbjct: 2    NRARTEGITFTKEPFMEDTGPRKIKNMKFSTLSESEISKIAEVQVWKGSYYDSFKKPIHG 61

Query: 4271 GLLDPRMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCS 4092
            GLLDPRMGP NK+  CATC G++ +CPGHYGYL LALPV+NVGY+S+IV+ILKCICK C+
Sbjct: 62   GLLDPRMGPANKSLVCATCDGNFHDCPGHYGYLNLALPVFNVGYLSTIVEILKCICKGCA 121

Query: 4091 RILLEDERRQKLLKKMRSPKMDALKKTRLMK-DIVKDLSNKAIKCYRCGYVNGKVKKSTA 3915
            RILL+++ R+K LKKMRS K   L K   +K  ++KD S K + C RCGY+NG VKK  A
Sbjct: 122  RILLDEDTRKKHLKKMRSSKKSELDKIDFVKVRVIKDCS-KVVNCPRCGYINGSVKKLPA 180

Query: 3914 SQGVKIFHDRSRLFDGL-EDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCE 3738
            S  + I HD S+  + + E+  SA+S +KDS+ + ++SN ++NP  V  LFKRMLDEDCE
Sbjct: 181  S--LTIIHDCSKCRNYIVEELDSALSRMKDSRATTNVSNRILNPFQVLSLFKRMLDEDCE 238

Query: 3737 LLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELLEA 3558
            LLY+++RPEKL+M N+ VPPI IRPSV+ D   SNENDITERLK ++Q NA L+QEL E+
Sbjct: 239  LLYVAERPEKLIMTNVVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQES 298

Query: 3557 NCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGKR 3381
              +++ L GWD LQ EVAQ+INSDVRG PF MQ  K + GFVQRLKGK GRFRGNLSGKR
Sbjct: 299  TFSSKFLDGWDILQNEVAQFINSDVRGIPFYMQPTKQLAGFVQRLKGKHGRFRGNLSGKR 358

Query: 3380 VEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARM 3201
            VEYTGRTVISPDPNLKI+EVAIPIHMARILTYPERV++HNIEKLRQCV NGPDKYPGARM
Sbjct: 359  VEYTGRTVISPDPNLKISEVAIPIHMARILTYPERVTHHNIEKLRQCVRNGPDKYPGARM 418

Query: 3200 LRRADGSQWNLNV-ARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVM 3024
            LRR  G  W+L V  RKR ADEL+ GDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR+M
Sbjct: 419  LRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIM 478

Query: 3023 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 2844
            PWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAILLMGV+NNLCTPKNGEILVAS
Sbjct: 479  PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVENNLCTPKNGEILVAS 538

Query: 2843 TQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSIL 2664
            TQDFLTSSFLITRKDTFYDR+ FSL+CSY+GDGMD IDLPTPA++KPVELW+GKQLFSI+
Sbjct: 539  TQDFLTSSFLITRKDTFYDRSTFSLICSYIGDGMDPIDLPTPAIVKPVELWSGKQLFSII 598

Query: 2663 VRPDANVRVFLNLTVREKNYTK-LLVNGREIE--ALCPNDGFVYFRNSELISGQLGKATL 2493
            +RP AN+RV++NLTV+E+NYT+   +  ++IE   LCPNDGFVYFRNSELISGQ+GK TL
Sbjct: 599  LRPHANMRVYVNLTVKERNYTEDKKIKDKKIEWKTLCPNDGFVYFRNSELISGQVGKVTL 658

Query: 2492 GNGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQE 2313
            GNGNKDGL+ VLLRDY+ HAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP + L ++K E
Sbjct: 659  GNGNKDGLFSVLLRDYRAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILINKKDE 718

Query: 2312 LILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRN 2133
             I EGY +CD+ I  +N+G L    GC+AAQTLE +I+ +LNG+RD  GK+CMQ LHWRN
Sbjct: 719  TISEGYRECDKHIEAFNKGKLELLAGCDAAQTLETRITGVLNGLRDTAGKVCMQTLHWRN 778

Query: 2132 SPLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVA 1953
            SPLIMSQCGSKGS INISQM+ACVGQQSVGGRR P+GFIDRSLPHF R  KTP AKGFVA
Sbjct: 779  SPLIMSQCGSKGSSINISQMVACVGQQSVGGRRTPNGFIDRSLPHFPRKSKTPAAKGFVA 838

Query: 1952 NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASG 1773
            NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR+LMK++EDL +HYD  VRNA G
Sbjct: 839  NSFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSLEDLFLHYDYTVRNAGG 898

Query: 1772 CIVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEK-LSPEKVSEIVESRL 1596
             IVQF YGDD MDPA MEGKNG PLNFERLFLK+KA CP  E+++ LS   VS++V  +L
Sbjct: 899  SIVQFCYGDDGMDPAGMEGKNGKPLNFERLFLKSKAICPNDEDDEILSSSDVSKVVHEKL 958

Query: 1595 SQQDMTP-------EGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVE 1437
            S+ DM+        E G S  F  SL+ F+ +     K T+E F         E+ + ++
Sbjct: 959  SEFDMSRLAEKGVFEVGFSADFVESLQSFIKDNA---KLTEEGF-------TDEHSQNLK 1008

Query: 1436 KIVLHISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAG 1257
            K    ISG+T +QL+VFL+ C+SRYH KK+E G  +GA G HSIGEPGTQMTLKTFHFAG
Sbjct: 1009 KFGQRISGITRKQLDVFLNICLSRYHSKKMEAGAPVGATGAHSIGEPGTQMTLKTFHFAG 1068

Query: 1256 VASMNITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTL 1077
            VASMN+T GVPR+KEI+N  KKISTP+ITA LE DDN N AR+V+GRIEKT L  VAK++
Sbjct: 1069 VASMNVTLGVPRVKEIMNGNKKISTPIITAILERDDNANTARIVKGRIEKTNLGQVAKSI 1128

Query: 1076 KTVMTNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEIL 897
            K VMT+RSA++VITLDM  IQDA L+IDAN+V+ESIL+T K KLK EHIK+L++KKLE++
Sbjct: 1129 KVVMTSRSASVVITLDMKRIQDAHLNIDANIVKESILRTKKTKLKPEHIKILDIKKLEVV 1188

Query: 896  PQEVDRSKIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQMSKCKLLVEGTGLLD 717
            PQ+VDRSKIHF L+YLK++LPTV+VKGIKT++RV+I K+    T+  K +LLVEGTG  +
Sbjct: 1189 PQDVDRSKIHFQLHYLKNLLPTVVVKGIKTVDRVVISKD----TKAEKFRLLVEGTGFRE 1244

Query: 716  VMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETM-KSHGMSIDNRHMMLLADV 540
            VMG EG+DGR T SNHI EV  TLGIEAAR+ I+ EI+ TM  +HGM+ID RHMMLLAD+
Sbjct: 1245 VMGVEGIDGRKTVSNHIHEVRDTLGIEAARESIVKEIKYTMVDTHGMNIDIRHMMLLADM 1304

Query: 539  MTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPV 360
            MT  G +LGINRFGI  M KS+LMLASFE+TAD LF ASV GR D+I GVSESIIMG+P+
Sbjct: 1305 MTATGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPI 1364

Query: 359  QIGTGLFKVKQRVDVPSDLCYGPDPIL 279
            QIGTG+ KVKQR+D P +L +G  PIL
Sbjct: 1365 QIGTGMIKVKQRLD-PPELPHGTSPIL 1390


>ref|XP_010265589.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Nelumbo
            nucifera]
          Length = 1392

 Score = 1929 bits (4996), Expect = 0.0
 Identities = 983/1399 (70%), Positives = 1140/1399 (81%), Gaps = 15/1399 (1%)
 Frame = -2

Query: 4430 IVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENGLLDPRM 4251
            ++FTK+ +IEDVGPR++KS++F+  SG EI K AEVQVW+  YYD NRKPI++GLLD RM
Sbjct: 8    MLFTKEPYIEDVGPRKIKSIRFSMFSGDEIRKAAEVQVWRSVYYDVNRKPIDDGLLDSRM 67

Query: 4250 GPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSRILLEDE 4071
            GP +K+  C TC GS+ +CPGH+GYL LALPV+NVGY S+I+DILKCICK+C+RILLE+E
Sbjct: 68   GPASKSGICTTCDGSFTDCPGHFGYLNLALPVFNVGYFSTILDILKCICKSCARILLEEE 127

Query: 4070 RRQKLLKKMRSPKMDALKKTRLMKDIVKDL-----SNKAIKCYRCGYVNGKVKKSTASQG 3906
            +R+  LKKMRS K DAL+K  LMK IVK       S KA+KC RCGY+NG VKK  +  G
Sbjct: 128  KRKDYLKKMRSSKADALQKNNLMKQIVKKCTTMLSSKKALKCTRCGYINGFVKKGASISG 187

Query: 3905 ----VKIFHDRSRLFD-GLEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDC 3741
                + I HDRS++ D  LE+  SAISH K+SK S  +  HV+NP  +  LFKRM+DEDC
Sbjct: 188  TGSTLGIVHDRSKVNDESLEECSSAISHKKESKASFRVV-HVLNPVRILALFKRMVDEDC 246

Query: 3740 ELLYLSDRPEKLMMVNIAVPPIPIRPSVIAD-GDRSNENDITERLKRVVQVNASLQQELL 3564
            ELLYL DRPEKL++ +IAVPPI IRPSV  D G  SNE+DIT +L  +++ NA L+Q+L 
Sbjct: 247  ELLYLYDRPEKLIITDIAVPPIAIRPSVFMDAGTMSNEDDITSKLSAIIRANAPLRQDLQ 306

Query: 3563 EANCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSG 3387
             AN  ++ L  WD LQ+EVAQYINSDVRG P +MQ +KP+ GFVQRLKGKQGRFRGNLSG
Sbjct: 307  GANPKSKCLLDWDQLQIEVAQYINSDVRGIPTSMQPSKPLRGFVQRLKGKQGRFRGNLSG 366

Query: 3386 KRVEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGA 3207
            KRVEYTGRTVISPDPNLKITEVAIPI MA+ILTYPERVS+HNIEKLRQCV NG  KYPGA
Sbjct: 367  KRVEYTGRTVISPDPNLKITEVAIPILMAQILTYPERVSHHNIEKLRQCVRNGSQKYPGA 426

Query: 3206 RMLRRADGSQWNLNV-ARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR 3030
              +R  DGS  NL   ARKR ADELKYG IV+RHLEDGDIVLFNRQPSLHRMSIM HRAR
Sbjct: 427  NFIRYPDGSIMNLRFSARKRAADELKYGYIVERHLEDGDIVLFNRQPSLHRMSIMSHRAR 486

Query: 3029 VMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILV 2850
            +MPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPKNG ILV
Sbjct: 487  IMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGAILV 546

Query: 2849 ASTQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFS 2670
            ASTQDFLTS+FLITRKDTFYDRAAFSLMCSYMGDGMD +DLPTPA+IKP+ELWTGKQLFS
Sbjct: 547  ASTQDFLTSAFLITRKDTFYDRAAFSLMCSYMGDGMDPVDLPTPALIKPIELWTGKQLFS 606

Query: 2669 ILVRPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATLG 2490
            +LVRP A++RV+LNLTV EKN  K      + E +CPNDGFVYFRNSELI GQLGKATLG
Sbjct: 607  VLVRPHAHMRVYLNLTVLEKNCVK------QKETMCPNDGFVYFRNSELICGQLGKATLG 660

Query: 2489 NGNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQEL 2310
            NGNKDGL+ VLLRDY  HAAA+CMNR+AKLSARWIGNHGFSIGIDDVQP + L D+K+E 
Sbjct: 661  NGNKDGLFSVLLRDYNAHAAASCMNRIAKLSARWIGNHGFSIGIDDVQPGELLKDKKKET 720

Query: 2309 ILEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNS 2130
            I +GY  CDE IH YN+G+L  EPGC+AAQTLEA+I++ LN IR+ T  +CMQELHWRNS
Sbjct: 721  IEDGYKACDELIHSYNKGNLELEPGCDAAQTLEAQITRKLNEIREETAAVCMQELHWRNS 780

Query: 2129 PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVAN 1950
            PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAP+GFIDRSLPHF R  KTP AKGFVAN
Sbjct: 781  PLIMSQCGSKGSPINISQMIACVGQQSVGGRRAPNGFIDRSLPHFPRKSKTPAAKGFVAN 840

Query: 1949 SFYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGC 1770
            SFY+GL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+KA+EDL V+YDD VRNASG 
Sbjct: 841  SFYTGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKALEDLAVYYDDTVRNASGG 900

Query: 1769 IVQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRLSQ 1590
            +VQF YGDD +DPANMEGK G PLN ER++LK KATCP+G N  L P ++ +I++ R+S+
Sbjct: 901  VVQFLYGDDGLDPANMEGKKGIPLNLERVYLKTKATCPSGTNASLCPSEIVKILDDRISR 960

Query: 1589 QDMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVLHISGV 1410
             DMTP+GGCS AFK  L  F+   ++ L+ T++  GL E  A  +N + +E I  +ISG+
Sbjct: 961  YDMTPDGGCSSAFKKLLVDFIQNRISILRNTRKALGLDEEYAKKDNSDILEHIAANISGI 1020

Query: 1409 TARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASMNITQG 1230
            T +QL+VFL+TCISRYH+K+IE G AIGAIG  SIGEPGTQMTLKTFHFAGVASMN+T G
Sbjct: 1021 TTQQLKVFLETCISRYHLKRIEAGAAIGAIGAQSIGEPGTQMTLKTFHFAGVASMNVTLG 1080

Query: 1229 VPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVMTNRSA 1050
            VPRIKEIIN AK ISTP+ITATLECDDNV  AR+V+G IEKT L +VAK++K VMT R A
Sbjct: 1081 VPRIKEIINGAKNISTPIITATLECDDNVKSARIVKGCIEKTVLGEVAKSIKIVMTQRQA 1140

Query: 1049 AIVITLDMDMIQDAQLSIDANVVQESILK--TPKIKLKQEHIKVLEVKKLEILPQEVDRS 876
            +IVI+LDM  I+ AQL I A+ V+ESILK   PK K K   I V +  KL ++P E DRS
Sbjct: 1141 SIVISLDMARIEAAQLKISADSVKESILKHLNPKFKPK---IVVDKGYKLIVIPTESDRS 1197

Query: 875  KIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQMSKCKLLVEGTGLLDVMGTEGV 696
            K+HF L+ LK++LP VIVKGI T++R +I K +D      K  LLVEGT LL VMGT GV
Sbjct: 1198 KLHFELHNLKAVLPQVIVKGISTVQRAVINKSKD-----GKYNLLVEGTNLLGVMGTPGV 1252

Query: 695  DGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADVMTFRGEVL 516
            DG  TTSNHIIEV  TLGIEAAR+CII+EI+ TM  HGM ID RHMMLLAD+MT++GEVL
Sbjct: 1253 DGCKTTSNHIIEVQGTLGIEAARRCIIDEIQYTMGKHGMDIDIRHMMLLADLMTYKGEVL 1312

Query: 515  GINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPVQIGTGLFK 336
            GI R GIQ M +S+LMLASFEKTADHLFNASVNGR D IEGVSE II+G+P+QIGTG+ K
Sbjct: 1313 GITRTGIQKMKESVLMLASFEKTADHLFNASVNGRDDKIEGVSECIILGIPMQIGTGILK 1372

Query: 335  VKQRVDVPSDLCYGPDPIL 279
            V QR      L Y PDPI+
Sbjct: 1373 VIQRYPQVPQLSYKPDPII 1391


>ref|XP_014493454.1| PREDICTED: DNA-directed RNA polymerase III subunit 1 [Vigna radiata
            var. radiata]
          Length = 1392

 Score = 1914 bits (4959), Expect = 0.0
 Identities = 958/1404 (68%), Positives = 1146/1404 (81%), Gaps = 13/1404 (0%)
 Frame = -2

Query: 4451 NRDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIEN 4272
            NR +T+ I FTK+ F+ED GPR++K+M+F+TLS ++ISKL EVQVWKG YYDS +KPI  
Sbjct: 2    NRGRTEGITFTKEPFMEDAGPRKIKNMEFSTLSDTDISKLGEVQVWKGSYYDSFKKPIHG 61

Query: 4271 GLLDPRMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCS 4092
            GLLDPRMGP NK+  CATCHG++ +CPGHYGYL LALPV+NVGY+SSIV+ILKCICK C+
Sbjct: 62   GLLDPRMGPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLSSIVEILKCICKGCA 121

Query: 4091 RILLEDERRQKLLKKMRSPKMDALKKTRLMK-DIVKDLSNKAIKCYRCGYVNGKVKKSTA 3915
            RILL+++ R++ LKKMRS K   L K   +K  ++KD S K + C RCGY+NG VKK  A
Sbjct: 122  RILLDEDTRKRHLKKMRSTKNSELDKIDFVKVHVIKDCS-KVVNCPRCGYINGSVKKLPA 180

Query: 3914 SQGVKIFHDRSRLFDGL-EDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCE 3738
            S  + I HD S+  + + ++ +S +S IKD + + ++SN ++NP  V  LFK+MLDEDCE
Sbjct: 181  S--LTIMHDCSKCNNNIVKELESTLSRIKDFRATTNVSNRILNPFEVLSLFKKMLDEDCE 238

Query: 3737 LLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELLEA 3558
            LLY+++RPEKL++ NI VPPI IRPSV+ D   SNENDITERLK ++Q NA L+QEL E+
Sbjct: 239  LLYVAERPEKLIITNIIVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQES 298

Query: 3557 NCAARL-SGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGKR 3381
            + +++L  GWD LQ+EVAQ+INS+VRG PF MQ  K + GFVQRLKGK GRFRGNLSGKR
Sbjct: 299  SVSSKLLDGWDILQIEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKR 358

Query: 3380 VEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARM 3201
            VEYTGRTVISPDPNLKI+EVAIPI MA ILTYPERV++HNIEKLRQCV NGPDKYPGARM
Sbjct: 359  VEYTGRTVISPDPNLKISEVAIPILMAHILTYPERVTHHNIEKLRQCVRNGPDKYPGARM 418

Query: 3200 LRRADGSQWNLNV-ARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVM 3024
            LRR  G  W+L V  RKR ADEL+ GDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR+M
Sbjct: 419  LRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIM 478

Query: 3023 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 2844
            PWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS
Sbjct: 479  PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 538

Query: 2843 TQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSIL 2664
            TQDFLTSSFLITRKD FYDR+ F+ +CSY+GDG+D IDLPTPA++KP+ELW+GKQLFS+L
Sbjct: 539  TQDFLTSSFLITRKDMFYDRSVFTNICSYLGDGLDPIDLPTPAIVKPIELWSGKQLFSLL 598

Query: 2663 VRPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATLGNG 2484
            +RP ANV+V++NLTV+EK YTKL    RE++ LCPNDGFVYFRN+ELISGQ+GK TLGNG
Sbjct: 599  LRPHANVKVYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNG 658

Query: 2483 NKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQELIL 2304
            NKDGL+ VLLRDYK HAA +CMNR+AK SARWIGNHGF+IGIDDV+P + L ++K E +L
Sbjct: 659  NKDGLFSVLLRDYKAHAAGSCMNRVAKFSARWIGNHGFTIGIDDVEPKEILINKKDETLL 718

Query: 2303 EGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNSPL 2124
            EGY KCD  I  +N+G L    GC+AAQTLE +I+ +LNG+RD  GK+CMQ LHWRNSPL
Sbjct: 719  EGYKKCDNHIQAFNKGKLELLAGCDAAQTLETRITGVLNGLRDMAGKVCMQTLHWRNSPL 778

Query: 2123 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVANSF 1944
            IMSQCGSKGSPINISQM+A VGQQSVGGRRAP+GF+DRSLPHF  N KTP AKGFVANSF
Sbjct: 779  IMSQCGSKGSPINISQMVALVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSF 838

Query: 1943 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGCIV 1764
            Y+GLSATEFFFHTMGGREGLVDTAVKTADTGYMSR+LMK+MEDL +HYD  VRNASG +V
Sbjct: 839  YTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNASGSVV 898

Query: 1763 QFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCP-AGENEKLSPEKVSEIVESRLSQQ 1587
            QF YGDD MDP+ MEGKNG PLNFER+FLK+KA CP   ++E LS   V ++V+ +LS+ 
Sbjct: 899  QFCYGDDGMDPSGMEGKNGKPLNFERMFLKSKAICPIKDDDEILSSSTVCQVVQEKLSEF 958

Query: 1586 DMTP-------EGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIV 1428
             M+        E G S  F  SL+ F+     + K T+E F         +N + ++K  
Sbjct: 959  GMSREVEKGVLEVGFSADFVESLQSFIK---GSTKLTEEAF-------TDDNSQILKKFG 1008

Query: 1427 LHISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVAS 1248
              ISG+T RQLEVFL+ C+SRYH KK++ G  +GA G HSIGEPGTQMTLKTFHFAGVAS
Sbjct: 1009 QRISGITRRQLEVFLNICLSRYHSKKMDAGAPVGATGAHSIGEPGTQMTLKTFHFAGVAS 1068

Query: 1247 MNITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTV 1068
            MN+T GVPR+KEI+N  KKISTP+ITA LE DD+ N AR+V+ RIEKT L  VAK++K V
Sbjct: 1069 MNVTLGVPRVKEIMNGNKKISTPIITAILERDDSANTARIVKDRIEKTNLGQVAKSIKVV 1128

Query: 1067 MTNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQE 888
            +T++ A++ ITLDM+ IQDA L+IDAN+V+ESIL+T K KLK EHIK+L++KKL ++PQ+
Sbjct: 1129 LTSKLASVAITLDMERIQDAHLNIDANIVKESILQTKKTKLKPEHIKILDIKKLLVVPQD 1188

Query: 887  VDRSKIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQMSKCKLLVEGTGLLDVMG 708
             DRSK+HF L+YLK +LPTV+VKGIKT +RV+I KEEDK T+  K KLLVEG G  +V+G
Sbjct: 1189 ADRSKLHFQLHYLKKLLPTVVVKGIKTADRVVISKEEDKITKAEKFKLLVEGMGFREVIG 1248

Query: 707  TEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETM-KSHGMSIDNRHMMLLADVMTF 531
             EGVDGR T SNHI+EV  TLGIEAAR+CI+ EI+ TM  +HGM+ID RHMMLLADVMT 
Sbjct: 1249 VEGVDGRYTLSNHILEVRDTLGIEAARECIVKEIKYTMVDTHGMNIDTRHMMLLADVMTS 1308

Query: 530  RGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPVQIG 351
             G +LGINRFGI  M KS+LMLASFE+TAD LF ASV GR D+I GVSESIIMG+P+ IG
Sbjct: 1309 TGNILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIG 1368

Query: 350  TGLFKVKQRVDVPSDLCYGPDPIL 279
            TG+ KVKQR+D P DL +G  PIL
Sbjct: 1369 TGMIKVKQRLD-PPDLPHGASPIL 1391


>ref|XP_007132141.1| hypothetical protein PHAVU_011G070100g [Phaseolus vulgaris]
            gi|561005141|gb|ESW04135.1| hypothetical protein
            PHAVU_011G070100g [Phaseolus vulgaris]
          Length = 1392

 Score = 1912 bits (4953), Expect = 0.0
 Identities = 967/1404 (68%), Positives = 1141/1404 (81%), Gaps = 13/1404 (0%)
 Frame = -2

Query: 4451 NRDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIEN 4272
            NR +T+ I FTK+ F+ED GPR++K+M+F+ LS SEISKL EVQVWKG YYDS +KPI  
Sbjct: 2    NRGRTEGITFTKEPFMEDAGPRKIKNMKFSMLSDSEISKLGEVQVWKGSYYDSFKKPIHG 61

Query: 4271 GLLDPRMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCS 4092
            GLLDPRMGP NK+  CATCHG++ +CPGHYGYL LALPV+NVGY+ SIV+ILKCICK C+
Sbjct: 62   GLLDPRMGPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLGSIVEILKCICKGCA 121

Query: 4091 RILLEDERRQKLLKKMRSPKMDALKKTRLMK-DIVKDLSNKAIKCYRCGYVNGKVKKSTA 3915
            RILL+++ R+K LKKMRS K   L K   +K  I+KD S K + C RCGY+NG VKK  A
Sbjct: 122  RILLDEDTRKKHLKKMRSSKKSELDKMDFVKVRIIKDCS-KVVNCPRCGYINGSVKKLPA 180

Query: 3914 SQGVKIFHDRSRLFDGL-EDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCE 3738
            S  + I HD S+  + + E+ +S +S IKDSK + ++SN ++NP  V  LF++MLDEDCE
Sbjct: 181  S--LIIMHDCSKCKNNIVEELESTLSRIKDSKATANVSNRILNPFQVLSLFRKMLDEDCE 238

Query: 3737 LLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELLEA 3558
            LLY+++RPEKL++ NI VPPI IRPSV+ D   SNENDITERLK ++Q NA L+QEL E+
Sbjct: 239  LLYVAERPEKLIITNIVVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQES 298

Query: 3557 NCAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGKR 3381
            + +++ L GW+ LQ EVAQ+INS+VRG PF MQ  K + GFVQRLKGK GRFRGNLSGKR
Sbjct: 299  SVSSKFLDGWEILQNEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKR 358

Query: 3380 VEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARM 3201
            VEYTGRTVISPDPNLKI+EVAIPI MA ILTYPERV++HNIEKLRQCV NGPDKYPGARM
Sbjct: 359  VEYTGRTVISPDPNLKISEVAIPILMASILTYPERVTHHNIEKLRQCVRNGPDKYPGARM 418

Query: 3200 LRRADGSQWNLNV-ARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVM 3024
            LRR  G  W+L V  RKR ADEL+ GDIVDRHLEDGDIVLFNRQPSLHRMSIM HRAR+M
Sbjct: 419  LRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIM 478

Query: 3023 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 2844
            PWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS
Sbjct: 479  PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 538

Query: 2843 TQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSIL 2664
            TQDFLTSSFL+TRKDTFYDR+AF+ +C+++GDG+D IDLPTPA++KPVELW+GKQLFS+L
Sbjct: 539  TQDFLTSSFLVTRKDTFYDRSAFTNICTFIGDGLDLIDLPTPAIVKPVELWSGKQLFSLL 598

Query: 2663 VRPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATLGNG 2484
            +RP AN +V++NLTV+EK YTKL    RE++ LCPNDGFVYFRN+ELISGQ+GK TLGNG
Sbjct: 599  LRPHANFKVYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNTELISGQIGKVTLGNG 658

Query: 2483 NKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQELIL 2304
            NKDGL+ VLLRDYK HAAA+CMNRLAKLSARWIGNHGFSIGIDDVQP + L  +K E + 
Sbjct: 659  NKDGLFSVLLRDYKAHAAASCMNRLAKLSARWIGNHGFSIGIDDVQPKEILIKKKDETLS 718

Query: 2303 EGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNSPL 2124
            EGY KCD  I  +N+G L    GC+A QTLE +I+ +LNG+RD  GK+CMQ LHWRNSPL
Sbjct: 719  EGYKKCDNHIQAFNKGKLELLAGCDAPQTLETQITGVLNGLRDMAGKVCMQTLHWRNSPL 778

Query: 2123 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVANSF 1944
            IMSQCGSKGSPINISQM+ACVGQQSVGGRRAP+GF+DRSLPHF  N KTP AKGFVANSF
Sbjct: 779  IMSQCGSKGSPINISQMVACVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSF 838

Query: 1943 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGCIV 1764
            YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSR+LMK+MEDL +HYD  VRNA G IV
Sbjct: 839  YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNAGGSIV 898

Query: 1763 QFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCP-AGENEKLSPEKVSEIVESRLSQQ 1587
            QF YGDD MDP  MEGKNG PLNFERLFLK+KA CP   ++E LS   V ++V+ +LS+ 
Sbjct: 899  QFCYGDDGMDPGGMEGKNGKPLNFERLFLKSKAICPNKDDDEVLSSSDVCKVVQEKLSEF 958

Query: 1586 DMTP-------EGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIV 1428
             ++        E G S  F  SL+ F+ +     K T+E F         +N + ++K  
Sbjct: 959  GVSREVEKGVLEVGFSADFVQSLQSFIKDNT---KLTEETF-------TDDNSQILKKFG 1008

Query: 1427 LHISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVAS 1248
              ISG+T  QLEVFL+ C+SRYH KKIE G  +GA G HSIGEPGTQMTLKTFHFAGVAS
Sbjct: 1009 ERISGITRAQLEVFLNICLSRYHSKKIEAGAPVGATGAHSIGEPGTQMTLKTFHFAGVAS 1068

Query: 1247 MNITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTV 1068
            MN+T GVPR+KEI+N  KKISTP+ITA LE  D  N AR+V+GRIEKT L  VAK++K V
Sbjct: 1069 MNVTLGVPRVKEIMNGNKKISTPIITAILERTDCANTARIVKGRIEKTNLGQVAKSIKVV 1128

Query: 1067 MTNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQE 888
            +T+R A++VITLDM+ IQDA L+IDAN+V+ESIL+T K KLK EHIK+L+VKKL ++PQ+
Sbjct: 1129 VTSRLASVVITLDMERIQDAHLNIDANIVKESILQTKKAKLKPEHIKILDVKKLRVVPQD 1188

Query: 887  VDRSKIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQMSKCKLLVEGTGLLDVMG 708
             DRSK+HF LNYLK++LP+V+VKGIKT +RV+I KEEDK T+  K KLLVEGTG  +VMG
Sbjct: 1189 GDRSKLHFQLNYLKNLLPSVVVKGIKTADRVVISKEEDKITKAEKFKLLVEGTGFREVMG 1248

Query: 707  TEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETM-KSHGMSIDNRHMMLLADVMTF 531
             EGVDG  T SNHI EV  TLGIEAAR+CI+ EI+  M  +HGM+ID RHMMLLADVMT 
Sbjct: 1249 VEGVDGCKTVSNHIHEVRDTLGIEAARECIVKEIKYVMVDTHGMNIDTRHMMLLADVMTA 1308

Query: 530  RGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPVQIG 351
             G +LGINRFGI  M KS+LMLASFE+TAD LF ASV GR D+I GVSESIIMG+P+ IG
Sbjct: 1309 TGHILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIG 1368

Query: 350  TGLFKVKQRVDVPSDLCYGPDPIL 279
            TG+ KVKQR+++P DL +G  PIL
Sbjct: 1369 TGMIKVKQRLELP-DLPHGASPIL 1391


>ref|XP_004294640.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Fragaria
            vesca subsp. vesca]
          Length = 1390

 Score = 1909 bits (4944), Expect = 0.0
 Identities = 962/1391 (69%), Positives = 1132/1391 (81%), Gaps = 19/1391 (1%)
 Frame = -2

Query: 4436 QSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENGLLDP 4257
            ++I FTK+ FIE+ G  R+   QF  +S SEISK+A  Q++ G+YYDSN+KPI  GLLD 
Sbjct: 8    KTIAFTKEPFIEEEGHCRIAQWQFNAMSQSEISKMAATQIFLGRYYDSNQKPIRGGLLDA 67

Query: 4256 RMGPPNKN-SKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSRILL 4080
            R+GP NK    C TC    ++CPGH+GYL LA+PV+NVGY+S++VD+LKCICK+CSRI+L
Sbjct: 68   RLGPANKQCGDCETCGAKLSDCPGHFGYLVLAVPVFNVGYLSTVVDVLKCICKSCSRIIL 127

Query: 4079 EDERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS-----NKAIKCYRCGYVNGKVKKSTA 3915
            +D+ R + L  +R PK D   K+  MK IVK  +     N+++KC +CGY+NG VK++  
Sbjct: 128  DDKSRSRFLNVVRDPKKD---KSVTMKLIVKKCTSMSSNNRSVKCPKCGYMNGSVKRAQG 184

Query: 3914 SQGVKIFHDRSRLFDGLEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCEL 3735
               +        +   ++D+KS    +KD K S+++  H++NP  V  LFKRMLDEDCEL
Sbjct: 185  MLAI--------VHGAVDDFKSVNPVMKDPKASINLQPHMLNPVKVFSLFKRMLDEDCEL 236

Query: 3734 LYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELLEAN 3555
            L L  RPE L+M  IAVPPI IRPSV+ DG +SNENDITERLK+++Q NA +QQ+L E +
Sbjct: 237  LNLKSRPENLIMTTIAVPPIAIRPSVLVDGSQSNENDITERLKKIIQTNACVQQDLSEGS 296

Query: 3554 CAARLSGWDDLQVEVAQYINSDVRGGPFAMQV-AKPMGGFVQRLKGKQGRFRGNLSGKRV 3378
                LS W+ LQ EVA YINSDVRG P+ M   AKP+ G VQRLKGK GRFRGNL GKRV
Sbjct: 297  TTRFLSNWEILQAEVALYINSDVRGVPYHMTANAKPLNGLVQRLKGKTGRFRGNLCGKRV 356

Query: 3377 EYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARML 3198
            EYTGRTVISPDPNLKITEV IPI MA+IL+YPERVS HNIEKLR+CV+NGP KYPGA +L
Sbjct: 357  EYTGRTVISPDPNLKITEVGIPIQMAQILSYPERVSDHNIEKLRRCVANGPFKYPGALVL 416

Query: 3197 RRADGSQWNLNVARKR--RADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVM 3024
            +  +G +W+L   +KR   AD LK GDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR+M
Sbjct: 417  KCQNGEEWSLKAGQKRMSHADNLKPGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIM 476

Query: 3023 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 2844
            PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPKNGEILVAS
Sbjct: 477  PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAVMLMGVQNNLCTPKNGEILVAS 536

Query: 2843 TQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSIL 2664
            TQDFLTSSFLITRKDTFYDRA+FSLMCSYMGDG +H+DLPTPAV+KP+ELWTGKQL+S+L
Sbjct: 537  TQDFLTSSFLITRKDTFYDRASFSLMCSYMGDGTEHVDLPTPAVVKPIELWTGKQLYSVL 596

Query: 2663 VRPDANVRVFLNLTVREKNYT-KLLVNGREIEALCPNDGFVYFRNSELISGQLGKATLGN 2487
            VRP++NVRV+LNLTVREK+Y+ +   +GREIEA+CPNDGFVYFRNSEL+SGQLGK TLGN
Sbjct: 597  VRPNSNVRVYLNLTVREKSYSNRKTEDGREIEAMCPNDGFVYFRNSELLSGQLGKGTLGN 656

Query: 2486 GNKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQELI 2307
            GNKDGL+ VLLRDYK HAAA+CMNR+AKLSARWIGNHGFSIGI DVQPS  L+ +K+++I
Sbjct: 657  GNKDGLFSVLLRDYKAHAAASCMNRVAKLSARWIGNHGFSIGISDVQPSDILYGEKEKII 716

Query: 2306 LEGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNSP 2127
             +GY KCD++I LY EG L   PGC+AAQ+LE+ I+ +LN IRD TGKLCMQ LHWRNSP
Sbjct: 717  KKGYDKCDDQIKLYKEGQLRLAPGCDAAQSLESGITAVLNDIRDQTGKLCMQTLHWRNSP 776

Query: 2126 LIMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVANS 1947
            LIMSQCGSKGS INISQM+ACVGQQSVGGRRAP+GFIDRSLPHF R   TP AKGFVA+S
Sbjct: 777  LIMSQCGSKGSAINISQMVACVGQQSVGGRRAPNGFIDRSLPHFPRKVNTPAAKGFVASS 836

Query: 1946 FYSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGCI 1767
            FYSGL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL K +EDL V YD  VR A+G I
Sbjct: 837  FYSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLSKVLEDLSVQYDKTVRAANGGI 896

Query: 1766 VQFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRLSQQ 1587
            VQF YGDD MDPA MEGK+GAPL+F RLF +AKATCPAGE+E LSP++VSEIV SRLS+Q
Sbjct: 897  VQFCYGDDGMDPAMMEGKSGAPLDFYRLFFRAKATCPAGESESLSPDEVSEIVRSRLSEQ 956

Query: 1586 DMTPEGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIVLHISGVT 1407
            DMTP+GGCS+ FK+S++ FLDEYV AL++TQE F L +S        T++ IV +ISGVT
Sbjct: 957  DMTPDGGCSMGFKSSIEQFLDEYVKALRKTQEAFLLNQSPGWEVKSATLQNIVQNISGVT 1016

Query: 1406 ARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVASMNITQGV 1227
             RQL+VFLDTCISRYH KK++ GTAIG IG  SIGEPGTQMTLKTFHFAGVASMN+T GV
Sbjct: 1017 PRQLKVFLDTCISRYHSKKVDAGTAIGVIGAQSIGEPGTQMTLKTFHFAGVASMNVTLGV 1076

Query: 1226 PRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTVMTNRSAA 1047
            PRIKEIIN AK I TP+IT  LECD+N  +AR+V GRIEKT L  VA+ ++ VM+ R+A 
Sbjct: 1077 PRIKEIINGAKNIHTPIITTVLECDNNPMIARMVAGRIEKTNLGQVAECIEIVMSPRAAY 1136

Query: 1046 IVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQEVDRSKIH 867
            + + LDM +IQDA LSIDANVV++SIL TP+IKLK EHI+V + + +E+   E DR K+H
Sbjct: 1137 VEVKLDMAVIQDAHLSIDANVVKQSILGTPRIKLKHEHIRVPDNQTVEVHSHEKDRRKLH 1196

Query: 866  FNLNYLKSILPTVIVKGIKTIERVIIKKEE---DKKTQMSKC------KLLVEGTGLLDV 714
            F+L YLKSILP VIV+GIKTIERV+I +E+   DKK    KC      KL  EG GLL V
Sbjct: 1197 FHLYYLKSILPNVIVRGIKTIERVVIDEEKVKRDKKDIDIKCGDEKKYKLFAEGKGLLAV 1256

Query: 713  MGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLADVMT 534
            M T+GVDG  TTSN IIEV QTLGIEAAR CII EI+ TMKSHGM+ID+RHMMLLADVMT
Sbjct: 1257 MSTKGVDGCKTTSNDIIEVQQTLGIEAARTCIIEEIKYTMKSHGMNIDDRHMMLLADVMT 1316

Query: 533  FRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPVQI 354
            FRG VLGI RFG+Q M KS+LMLASFE+T DHLFNASV G VD IEGVSESIIMG+P+ I
Sbjct: 1317 FRGLVLGITRFGVQQMGKSVLMLASFERTDDHLFNASVQGTVDKIEGVSESIIMGIPMPI 1376

Query: 353  GTGLFKVKQRV 321
            GTG+FK+KQR+
Sbjct: 1377 GTGMFKIKQRL 1387


>gb|KOM50756.1| hypothetical protein LR48_Vigan08g158300 [Vigna angularis]
          Length = 1405

 Score = 1894 bits (4907), Expect = 0.0
 Identities = 952/1380 (68%), Positives = 1127/1380 (81%), Gaps = 13/1380 (0%)
 Frame = -2

Query: 4451 NRDQTQSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIEN 4272
            NR +T+ I FTK+ F+ED GPR++K+M F+TLS S+ISKL EVQVWKG YYDS +KPI  
Sbjct: 2    NRGRTEGITFTKEPFMEDAGPRKIKNMMFSTLSDSDISKLGEVQVWKGSYYDSFKKPIHG 61

Query: 4271 GLLDPRMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCS 4092
            GLLDPRMGP NK+  CATCHG++ +CPGHYGYL LALPV+NVGY+SSIV+ILKCICK C+
Sbjct: 62   GLLDPRMGPANKSLGCATCHGNFHDCPGHYGYLNLALPVFNVGYLSSIVEILKCICKGCA 121

Query: 4091 RILLEDERRQKLLKKMRSPKMDALKKTRLMK-DIVKDLSNKAIKCYRCGYVNGKVKKSTA 3915
            RILL+++ R+K LKKMRS K   L K   +K  ++KD S K + C RCGY+NG VKK  A
Sbjct: 122  RILLDEDTRKKHLKKMRSTKKSELDKIDFVKVHVIKDCS-KVVNCPRCGYINGSVKKLPA 180

Query: 3914 SQGVKIFHDRSRLFDGL-EDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCE 3738
            S  + I HD S+  + + E+ +S +S IKDS+ + ++SN ++NP  V  LFK++LDEDCE
Sbjct: 181  S--LTIMHDCSKCNNNIVEELESTLSRIKDSRATTNVSNRILNPFQVLSLFKKILDEDCE 238

Query: 3737 LLYLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELLEA 3558
            LLY+++RPEKL++ NI VPPI IRPSV+ D   SNENDITERLK ++Q NA L+QEL E+
Sbjct: 239  LLYVAERPEKLIITNIIVPPIAIRPSVVMDESLSNENDITERLKNIIQANAVLRQELQES 298

Query: 3557 NCAARL-SGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGKR 3381
            + +++L  GWD LQ+EVAQ+INS+VRG PF MQ  K + GFVQRLKGK GRFRGNLSGKR
Sbjct: 299  SVSSKLLDGWDILQMEVAQFINSEVRGIPFYMQSTKQLAGFVQRLKGKHGRFRGNLSGKR 358

Query: 3380 VEYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARM 3201
            VEYTGRTVISPDPNLKI  VAIPI MA ILTYPERV++HNI KLRQCV NGPDKYPGARM
Sbjct: 359  VEYTGRTVISPDPNLKI--VAIPILMAHILTYPERVTHHNIHKLRQCVRNGPDKYPGARM 416

Query: 3200 LRRADGSQWNLNV-ARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVM 3024
            LRR  G  W+L V  RKR ADEL+ GDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRAR+M
Sbjct: 417  LRRDGGHSWSLKVLCRKRAADELRIGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARIM 476

Query: 3023 PWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 2844
            PWRTLRFNESVCNPYNADFDGDEMN+HVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS
Sbjct: 477  PWRTLRFNESVCNPYNADFDGDEMNLHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAS 536

Query: 2843 TQDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSIL 2664
            TQDFLTSSFLITRKDTFYDR+ F+ +CSY+GDG+D IDLPTPA++KP+ELW+GKQLFS+L
Sbjct: 537  TQDFLTSSFLITRKDTFYDRSVFTNICSYLGDGLDPIDLPTPAIVKPIELWSGKQLFSLL 596

Query: 2663 VRPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATLGNG 2484
            +RP ANV+V++NLTV+EK YTKL    RE++ LCPNDGFVYFRNSELISGQ+GK TLGNG
Sbjct: 597  LRPHANVKVYVNLTVKEKTYTKLDDKKRELKTLCPNDGFVYFRNSELISGQIGKVTLGNG 656

Query: 2483 NKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQELIL 2304
            NKDGL+ VLLRDYKTHAA +CMNR+AK SARWIGNHGF+IGIDDVQP + L  +K E +L
Sbjct: 657  NKDGLFSVLLRDYKTHAAGSCMNRVAKFSARWIGNHGFTIGIDDVQPKEILIKKKDETLL 716

Query: 2303 EGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNSPL 2124
            EGY KCD  I  +N+G L    GC+AAQTLE +I+ +LNG+RD  GK+CMQ LHWRNSPL
Sbjct: 717  EGYTKCDNHIQAFNKGKLELLAGCDAAQTLETRITGVLNGLRDMAGKVCMQTLHWRNSPL 776

Query: 2123 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVANSF 1944
            IMSQCGSKGSPINISQM+A VGQQSVGGRRAP+GF+DRSLPHF  N KTP AKGFVANSF
Sbjct: 777  IMSQCGSKGSPINISQMVALVGQQSVGGRRAPNGFLDRSLPHFPLNAKTPAAKGFVANSF 836

Query: 1943 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGCIV 1764
            Y+GLSATEFFFHTMGGREGLVDTAVKTADTGYMSR+LMK+MEDL +HYD  VRNASG IV
Sbjct: 837  YTGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRQLMKSMEDLFLHYDYTVRNASGSIV 896

Query: 1763 QFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCP-AGENEKLSPEKVSEIVESRLSQQ 1587
            QF YGDD MDP+ MEGKNG PLNFER+FLK+KA CP   ++E LS   V ++V+ +LS+ 
Sbjct: 897  QFCYGDDGMDPSGMEGKNGKPLNFERMFLKSKAICPIKDDDEILSSSTVCKVVQEKLSEF 956

Query: 1586 DMTP-------EGGCSLAFKTSLKCFLDEYVTALKRTQERFGLIESLAAMENFETVEKIV 1428
             ++        E G S  F  SL+ F+     + K T+E F         EN + ++K  
Sbjct: 957  GVSREVEKGVLEVGFSAEFVESLQSFIK---GSTKLTEEAF-------TDENSQILKKFG 1006

Query: 1427 LHISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVAS 1248
              ISG+T RQLEVFL+ C+SRYH KK++ G  +GA G HSIGEPGTQMTLKTFHFAGVAS
Sbjct: 1007 QRISGITRRQLEVFLNICLSRYHSKKMDAGAPVGATGAHSIGEPGTQMTLKTFHFAGVAS 1066

Query: 1247 MNITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKTV 1068
            MN+T GVPR+KEI+N  KKISTP+ITA LE DD+ N AR+V+GRIEKT L  VAK++K V
Sbjct: 1067 MNVTLGVPRVKEIMNGNKKISTPIITAILERDDSANTARIVKGRIEKTNLGQVAKSIKVV 1126

Query: 1067 MTNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQE 888
            +T+R A++VITLDM+ IQDA L+IDAN V+ESIL+T K KLK EHIK+L++KKL ++PQ+
Sbjct: 1127 LTSRLASVVITLDMERIQDAHLNIDANTVKESILQTKKTKLKPEHIKILDIKKLRVVPQD 1186

Query: 887  VDRSKIHFNLNYLKSILPTVIVKGIKTIERVIIKKEEDKKTQMSKCKLLVEGTGLLDVMG 708
             DRSK+HF L+YLK++LPTV+VKGIKT +RV+I KEEDK T+  K KLLVEG G  +VMG
Sbjct: 1187 ADRSKLHFQLHYLKNLLPTVVVKGIKTADRVVISKEEDKITKAEKFKLLVEGMGFREVMG 1246

Query: 707  TEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETM-KSHGMSIDNRHMMLLADVMTF 531
             EGVDG  T SNHI+EV  TLGIEAAR+CI+ EI+ TM  +HGM+ID RHMMLLADVMT 
Sbjct: 1247 VEGVDGCRTLSNHILEVRDTLGIEAARECIVKEIKYTMVDTHGMNIDTRHMMLLADVMTS 1306

Query: 530  RGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMPVQIG 351
             G +LGINRFGI  M KS+LMLASFE+TAD LF ASV GR D+I GVSESIIMG+P+ IG
Sbjct: 1307 TGNILGINRFGISKMGKSVLMLASFERTADILFQASVRGRDDSIGGVSESIIMGIPITIG 1366


>ref|XP_011081084.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Sesamum
            indicum]
          Length = 1405

 Score = 1893 bits (4904), Expect = 0.0
 Identities = 969/1414 (68%), Positives = 1147/1414 (81%), Gaps = 29/1414 (2%)
 Frame = -2

Query: 4433 SIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENGLLDPR 4254
            ++ F+KQ +IEDVGPRR++S+QF+T SG+E+ K AEV+V +G YYDS +KPI+NGLLDP 
Sbjct: 7    TLQFSKQPYIEDVGPRRIESIQFSTFSGTEVLKTAEVEVSRGVYYDSTKKPIDNGLLDPH 66

Query: 4253 MGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSRILLED 4074
            MGPPNKN  C TC+G++ ECPGH GYL LALPVYNVGY+S+I+DILKCICK C+R+LLE+
Sbjct: 67   MGPPNKNGFCKTCYGNFRECPGHCGYLALALPVYNVGYLSTIIDILKCICKKCARVLLEE 126

Query: 4073 ERRQKLLKKMRSPKMDALKKTRLMKDIVKDL-----SNKAIKCYRCGYVNGKVKKSTASQ 3909
            + RQ+ LKKMR+PK++ LKK  ++K +VK       S +A+KC RCGY+NG VKK     
Sbjct: 127  KERQEFLKKMRNPKLEPLKKNEILKKVVKRCNAMAGSKRAVKCSRCGYINGMVKKGP--- 183

Query: 3908 GVKIFHDRSRLFDG-LEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCELL 3732
             +KI HDR+++ D  LE+ +SA+SH KDSK +++ S+ +I+P +V+ L + MLDEDCELL
Sbjct: 184  -LKIQHDRAKIVDSDLEECQSAVSHTKDSKGNVNFSS-IIDPKLVYQLLRNMLDEDCELL 241

Query: 3731 YLSDRPEKLMMVNIAVPPIPIRPSVIADGD-RSNENDITERLKRVVQVNASLQQELLEAN 3555
            YL+DRPEKLM+ NI VPPI IRPSV  DG  +SNENDITERLKR++Q NASL+QELLE N
Sbjct: 242  YLNDRPEKLMVTNILVPPIAIRPSVFVDGGTQSNENDITERLKRIIQANASLRQELLETN 301

Query: 3554 CAAR-LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGKRV 3378
               + L+ WDDLQ+EVAQYINSDVRG PF M  AKP+ GFVQRLKGKQGRFRGNLSGKRV
Sbjct: 302  LYNKNLTSWDDLQMEVAQYINSDVRGLPFHMTTAKPLSGFVQRLKGKQGRFRGNLSGKRV 361

Query: 3377 EYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARML 3198
            EYTGRTVISPDPNLKI+EVAIPI MARILTYPERVS+HNIEKLRQCV NGP+KYPGA+ +
Sbjct: 362  EYTGRTVISPDPNLKISEVAIPILMARILTYPERVSHHNIEKLRQCVRNGPNKYPGAKFI 421

Query: 3197 RRADGSQWNLNVA-RKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVMP 3021
            R+ DG++ +L  + RKR ADELKYG IVDRHLEDGDIVLFNRQPSLHRMSIM HRAR+MP
Sbjct: 422  RQPDGTEISLMFSSRKRHADELKYGYIVDRHLEDGDIVLFNRQPSLHRMSIMSHRARIMP 481

Query: 3020 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAST 2841
            WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA++LMGVQNNLCTPKNGEILVAST
Sbjct: 482  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALMLMGVQNNLCTPKNGEILVAST 541

Query: 2840 QDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSILV 2661
            QDFLTSSFLITRKDTFYDRA+FSLMCSYMGD MD IDLPTPA++KPVELWTGKQLFS+L+
Sbjct: 542  QDFLTSSFLITRKDTFYDRASFSLMCSYMGDAMDPIDLPTPALVKPVELWTGKQLFSVLL 601

Query: 2660 RPDANVRVFLNLTVREKNYTKLLVNGREIEALCPNDGFVYFRNSELISGQLGKATLGNGN 2481
            RP A +RV+LNLTV EK+Y      G+  E +CP DGFVY RNSELISGQLGKAT+GNG+
Sbjct: 602  RPHAKMRVYLNLTVAEKSY------GKSRETMCPKDGFVYIRNSELISGQLGKATVGNGS 655

Query: 2480 KDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQELILE 2301
            KDGLY VLLRDY  HAAA CMNRLAKLSARWIGNHGFSIGI+DV P   L+ +K+  I +
Sbjct: 656  KDGLYSVLLRDYSAHAAATCMNRLAKLSARWIGNHGFSIGINDVTPGDVLNKEKKLTIDK 715

Query: 2300 GYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNSPLI 2121
             YG+C + I  YN G L   PGCN A+TLEAKI+  LN IR+ T  +CM+ L+WRNSPLI
Sbjct: 716  EYGQCTDYIESYNSGKLELLPGCNRAETLEAKITGTLNNIRERTANVCMKNLNWRNSPLI 775

Query: 2120 MSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVANSFY 1941
            MSQCGSKGSPINI QMIACVGQQSVGGRRAP+GF+DR+LPHF R  K P AKGFV NSFY
Sbjct: 776  MSQCGSKGSPINICQMIACVGQQSVGGRRAPNGFVDRTLPHFERGAKDPDAKGFVQNSFY 835

Query: 1940 SGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGCIVQ 1761
            +GLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKA+EDL V YD+ VRNASG IVQ
Sbjct: 836  TGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKALEDLSVQYDNTVRNASGSIVQ 895

Query: 1760 FRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEK----VSEIVESRLS 1593
            F YG D MDPA ME K+G PLNFERLF+KAKATCPA E + L+ E+    V+E++E RL 
Sbjct: 896  FVYGGDGMDPAQMEEKSGLPLNFERLFMKAKATCPAAEEKSLNTEEIKKIVNEMIEERLP 955

Query: 1592 QQDMTPEGGCSL---------------AFKTSLKCFLDEYVTALKRTQERFGLIESLAAM 1458
            +  M  E  C                  F  SLK F+++   +   +     L E   + 
Sbjct: 956  KSTMDLEEECLKDPPPSDTPSKKETLETFDKSLKSFIEKKHPS---SDLMLKLNEGGYSG 1012

Query: 1457 ENFETVEKIVLHISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTL 1278
            E+  ++EK+  ++SG+T  QL VFL+TCI+RY+ KKIE GTAIGAIG  SIGEPGTQMTL
Sbjct: 1013 EDQVSLEKLASNVSGITRNQLVVFLETCITRYNSKKIEAGTAIGAIGAQSIGEPGTQMTL 1072

Query: 1277 KTFHFAGVASMNITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRL 1098
            KTFHFAGVASMN+T GVPRIKEIINAAK+I+TP+IT  L+ +DN  +A++V+GRIEKT L
Sbjct: 1073 KTFHFAGVASMNVTLGVPRIKEIINAAKRINTPIITTALQSNDNDIIAKLVKGRIEKTLL 1132

Query: 1097 CDVAKTLKTVMTNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLE 918
              VAK++KT   +RSA+IVITLDM  IQ AQLSIDA  V+ES+L+TP++KLK++ +KVL 
Sbjct: 1133 EQVAKSIKTSQASRSASIVITLDMKRIQGAQLSIDAYTVKESVLQTPRMKLKEQQVKVLN 1192

Query: 917  VKKLEILPQEVDRSKIHFNLNYLKSILPTVIVKGIKTIERVIIKKE-EDKKTQMSKCKLL 741
             +KLE++ Q  DRSK+HF ++ +K+ L  V+VKGI ++ERVII  E ++K     K KLL
Sbjct: 1193 PRKLEVVLQ-ADRSKLHFEVHAIKNKLSKVVVKGINSVERVIIVNEAKEKDPTRKKLKLL 1251

Query: 740  VEGTGLLDVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRH 561
            VEGTGLL VMGT+GVDG+NTTSNHIIEV QTLGIEAARK II EI  TM SHGM+ID RH
Sbjct: 1252 VEGTGLLSVMGTDGVDGKNTTSNHIIEVQQTLGIEAARKKIIEEIHFTMSSHGMTIDIRH 1311

Query: 560  MMLLADVMTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSES 381
            MMLLAD+MTF+GEVLGI R G+Q M  S+LMLASFEKTADHLFNASV+GRVD IEGVSE 
Sbjct: 1312 MMLLADLMTFKGEVLGITRHGVQRMRDSVLMLASFEKTADHLFNASVSGRVDRIEGVSEC 1371

Query: 380  IIMGMPVQIGTGLFKVKQRVDVPSDLCYGPDPIL 279
            IIMG+P+QIGTG+ KV+Q V  P +L YGPDPI+
Sbjct: 1372 IIMGIPMQIGTGMLKVRQSVQ-PVELNYGPDPII 1404


>ref|XP_012064930.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1 [Jatropha
            curcas]
          Length = 1413

 Score = 1887 bits (4887), Expect = 0.0
 Identities = 955/1408 (67%), Positives = 1134/1408 (80%), Gaps = 22/1408 (1%)
 Frame = -2

Query: 4436 QSIVFTKQLFIEDVGPRRLKSMQFTTLSGSEISKLAEVQVWKGQYYDSNRKPIENGLLDP 4257
            Q IV+TK  +IEDVGPR++KS+QF+ +SG EI K AE QV+ GQYYD+NRKP++ GLLD 
Sbjct: 9    QDIVYTKHPYIEDVGPRKIKSIQFSLMSGHEIVKAAECQVYLGQYYDTNRKPVQGGLLDT 68

Query: 4256 RMGPPNKNSKCATCHGSYAECPGHYGYLKLALPVYNVGYISSIVDILKCICKNCSRILLE 4077
             MGP NKNS C TC  ++ +CPGH+GYL L LPV+NVGY+++I+DILKCICK+CSRIL +
Sbjct: 69   HMGPANKNSMCQTCGANFNDCPGHFGYLNLVLPVFNVGYMTNILDILKCICKSCSRILFD 128

Query: 4076 DERRQKLLKKMRSPKMDALKKTRLMKDIVKDLS----NKAIKCYRCGYVNGKVKKSTASQ 3909
            +++ +  LKKMRS  ++ LK+T L+K IVK  S    NKA++C RCG +NG VKK  A  
Sbjct: 129  EKQCKAHLKKMRSRNLEHLKRTDLVKKIVKKCSAMASNKAVRCMRCGDMNGMVKK--AGS 186

Query: 3908 GVKIFHDRSRLFDG-LEDYKSAISHIKDSKISLDMSNHVINPAMVHFLFKRMLDEDCELL 3732
             + I HDR +L DG LE+ KSAISH K+ +  +  + +++NPA V  LF+R+ +EDCE+L
Sbjct: 187  ALSIIHDRGKLIDGYLEECKSAISHTKEFRAPISPATYILNPARVLSLFERIPEEDCEVL 246

Query: 3731 YLSDRPEKLMMVNIAVPPIPIRPSVIADGDRSNENDITERLKRVVQVNASLQQELLEANC 3552
             L DRPEKL++ NIAVPP+ IRPSV+    +SNENDITERLK+++Q NASL+ ELLE   
Sbjct: 247  GLRDRPEKLIITNIAVPPLSIRPSVVMGETQSNENDITERLKQIIQANASLRMELLEGRR 306

Query: 3551 AAR--LSGWDDLQVEVAQYINSDVRGGPFAMQVAKPMGGFVQRLKGKQGRFRGNLSGKRV 3378
            +A   L  WD LQ  VA Y+NSDVR  P  ++V KP+ GFVQRLKGK GRFRGNL GKRV
Sbjct: 307  SANKYLDSWDGLQAAVALYVNSDVRV-PNNVEVGKPLSGFVQRLKGKTGRFRGNLCGKRV 365

Query: 3377 EYTGRTVISPDPNLKITEVAIPIHMARILTYPERVSYHNIEKLRQCVSNGPDKYPGARML 3198
            EYTGRTVISPDPNLKITEVA+PIHMA+IL+YPERVS HNIEKLRQCV NG +KYPGA+M+
Sbjct: 366  EYTGRTVISPDPNLKITEVAVPIHMAKILSYPERVSNHNIEKLRQCVRNGSNKYPGAKMV 425

Query: 3197 RRADGSQWNL-NVARKRRADELKYGDIVDRHLEDGDIVLFNRQPSLHRMSIMCHRARVMP 3021
            R  DGSQ  L    RKR A+ELK G IVDRHLEDGD+VLFNRQPSLHRMSIMCHRAR+MP
Sbjct: 426  RYPDGSQKVLIGNYRKRVAEELKIGCIVDRHLEDGDVVLFNRQPSLHRMSIMCHRARIMP 485

Query: 3020 WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAILLMGVQNNLCTPKNGEILVAST 2841
            WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEA+LLMGVQNNLCTPKNGEILVAST
Sbjct: 486  WRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEALLLMGVQNNLCTPKNGEILVAST 545

Query: 2840 QDFLTSSFLITRKDTFYDRAAFSLMCSYMGDGMDHIDLPTPAVIKPVELWTGKQLFSILV 2661
            QDFLTSSFLITRKDTFYDRAAFSLMCSYM DGMD IDLPTPA++KP+ELWTGKQLFS+L+
Sbjct: 546  QDFLTSSFLITRKDTFYDRAAFSLMCSYMNDGMDLIDLPTPAILKPIELWTGKQLFSVLL 605

Query: 2660 RPDANVRVFLNLTVREKNYTKLLVNG-REIEALCPNDGFVYFRNSELISGQLGKATLGNG 2484
            RP+ANVRV+LNLTV+EK Y+K      RE E +CPNDGFVY RNSELISGQLGKAT+GNG
Sbjct: 606  RPNANVRVYLNLTVKEKIYSKPKPGDKREKETMCPNDGFVYIRNSELISGQLGKATIGNG 665

Query: 2483 NKDGLYFVLLRDYKTHAAAACMNRLAKLSARWIGNHGFSIGIDDVQPSKRLHDQKQELIL 2304
            NKDGLY +LLRDY  HAAA CMNRLAKLSARWIGNHGFSIGIDDVQP K+L D+K + I 
Sbjct: 666  NKDGLYSILLRDYNPHAAAICMNRLAKLSARWIGNHGFSIGIDDVQPGKKLIDEKAKTIS 725

Query: 2303 EGYGKCDEKIHLYNEGSLPPEPGCNAAQTLEAKISQILNGIRDATGKLCMQELHWRNSPL 2124
             GY  CD+ I  YNEG L  +PGC+A QTLEA+I++ LN +R+  G +CM+ELHWRNSPL
Sbjct: 726  NGYQHCDKLIQEYNEGKLALKPGCDAIQTLEAEITETLNKLREQAGDVCMKELHWRNSPL 785

Query: 2123 IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFIDRSLPHFHRNQKTPGAKGFVANSF 1944
            IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGF+DRSLPHF R  KTP AKGFVANSF
Sbjct: 786  IMSQCGSKGSPINISQMIACVGQQSVGGRRAPDGFMDRSLPHFPRKSKTPAAKGFVANSF 845

Query: 1943 YSGLSATEFFFHTMGGREGLVDTAVKTADTGYMSRRLMKAMEDLCVHYDDAVRNASGCIV 1764
            YSGL+ATEFFFHTMGGREGLVDTAVKTADTGYMSRRL+K +EDL + YD+ V +A+G +V
Sbjct: 846  YSGLTATEFFFHTMGGREGLVDTAVKTADTGYMSRRLIKGLEDLFIDYDNKVLSANGSVV 905

Query: 1763 QFRYGDDNMDPANMEGKNGAPLNFERLFLKAKATCPAGENEKLSPEKVSEIVESRLSQQD 1584
            QF YGDD +DPA MEGK G PLN +RLF+K KATCPAGE + LSP  +S  V++ L   D
Sbjct: 906  QFVYGDDGLDPAKMEGKGGVPLNLDRLFMKVKATCPAGEGDYLSPSDISSWVKTLLDDYD 965

Query: 1583 MTPEGGCSLAFKTSLKCFLDEYVTALK---------RTQERFGLIESLAAMENFETVEKI 1431
               +  CS AFK +L  FL  +V  L+           Q    + E      N   +EK+
Sbjct: 966  KAFDSVCSEAFKQNLSFFLGNHVKRLETMLKLDNGVEEQNSENMEEVGGVRGNTTNIEKL 1025

Query: 1430 VLHISGVTARQLEVFLDTCISRYHMKKIEPGTAIGAIGGHSIGEPGTQMTLKTFHFAGVA 1251
               I G+T RQLEVFL TCI RY  K+IEPGTAIGAIG  SIGEPGTQMTLKTFHFAGVA
Sbjct: 1026 AHKIYGITKRQLEVFLKTCIVRYLWKRIEPGTAIGAIGAQSIGEPGTQMTLKTFHFAGVA 1085

Query: 1250 SMNITQGVPRIKEIINAAKKISTPVITATLECDDNVNVARVVRGRIEKTRLCDVAKTLKT 1071
            SMNITQGVPRIKEIIN AKKISTP+IT  LE + NVN AR+V+ RIEKT L  +AK++K 
Sbjct: 1086 SMNITQGVPRIKEIINGAKKISTPIITTELENNTNVNAARIVKTRIEKTVLGQIAKSIKI 1145

Query: 1070 VMTNRSAAIVITLDMDMIQDAQLSIDANVVQESILKTPKIKLKQEHIKVLEVKKLEILPQ 891
            VMT+RSA++V+TLDM  IQ+AQLS+DAN V+ESIL+TP+ KLK ++IKVL+++KLE++P 
Sbjct: 1146 VMTSRSASVVVTLDMKTIQEAQLSLDANTVRESILQTPRTKLKPQNIKVLDIRKLEVIPL 1205

Query: 890  EVDRSKIHFNLNYLKSILPTVIVKGIKTIERVII--KKEEDKKT--QMSKCKLLVEGTGL 723
              DR K+HF L+ LK++LP++ VKGIKT+ER +I  KK E K +  ++    + VEG GL
Sbjct: 1206 G-DREKVHFELHSLKNMLPSITVKGIKTVERAVIAQKKREGKASIQELPTYNMFVEGMGL 1264

Query: 722  LDVMGTEGVDGRNTTSNHIIEVYQTLGIEAARKCIINEIEETMKSHGMSIDNRHMMLLAD 543
             +VMGTEGVDGR TTSNH++E+++ LGIEAARKCII+EI+  M+ HGMSID RHMMLLAD
Sbjct: 1265 QEVMGTEGVDGRKTTSNHVMEIFKYLGIEAARKCIIDEIKNVMEGHGMSIDTRHMMLLAD 1324

Query: 542  VMTFRGEVLGINRFGIQNMDKSILMLASFEKTADHLFNASVNGRVDNIEGVSESIIMGMP 363
            +MTF+GEVLGI RFGIQ MDKS+LMLASFEKT+DHL+ A+V+GR D IEGVSE IIMG+P
Sbjct: 1325 LMTFKGEVLGITRFGIQKMDKSVLMLASFEKTSDHLYTAAVHGRDDRIEGVSECIIMGIP 1384

Query: 362  VQIGTGLFKVKQRVDVPSDLCYGPDPIL 279
            +++GTG+ KV+QRVD    L  G DPI+
Sbjct: 1385 MRLGTGILKVQQRVDPRPMLTKGLDPIM 1412