BLASTX nr result
ID: Ziziphus21_contig00002548
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Ziziphus21_contig00002548
(2771 letters)
Database: ./nr
77,306,371 sequences; 28,104,191,420 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_009344822.1| PREDICTED: DNA-directed RNA polymerase II su... 1002 0.0
ref|XP_009337078.1| PREDICTED: DNA-directed RNA polymerase II su... 1002 0.0
ref|XP_009363439.1| PREDICTED: DNA-directed RNA polymerase II su... 1002 0.0
ref|XP_008337428.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 999 0.0
ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prun... 999 0.0
ref|XP_010113285.1| DNA-directed RNA polymerase II subunit rpb1 ... 998 0.0
ref|XP_008242006.1| PREDICTED: DNA-directed RNA polymerase II su... 996 0.0
ref|XP_008361350.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 996 0.0
ref|XP_008448514.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 996 0.0
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 993 0.0
ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II su... 992 0.0
ref|XP_004146161.2| PREDICTED: DNA-directed RNA polymerase II su... 992 0.0
ref|XP_008337964.1| PREDICTED: DNA-directed RNA polymerase II su... 989 0.0
ref|XP_010266907.1| PREDICTED: DNA-directed RNA polymerase II su... 987 0.0
ref|XP_010029631.1| PREDICTED: DNA-directed RNA polymerase II su... 984 0.0
ref|XP_007046588.1| DNA-directed RNA polymerase II subunit RPB1 ... 978 0.0
ref|XP_007046587.1| DNA-directed RNA polymerase II subunit RPB1 ... 978 0.0
ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 ... 978 0.0
ref|XP_012491472.1| PREDICTED: DNA-directed RNA polymerase II su... 976 0.0
gb|KJB43259.1| hypothetical protein B456_007G190500 [Gossypium r... 976 0.0
>ref|XP_009344822.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Pyrus x
bretschneideri]
Length = 1820
Score = 1002 bits (2591), Expect = 0.0
Identities = 498/524 (95%), Positives = 517/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDD LSVEAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDQLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTST+IEED+DFV++
Sbjct: 1132 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTVIEEDIDFVKA 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMN E+PKG+M DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1252 KLILRIRIMNAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FD+ EGFK E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRRSLLDE
Sbjct: 1312 FDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAV+AE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYMDGLDFGMTP
Sbjct: 1432 AAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1492 SRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_009337078.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Pyrus x
bretschneideri]
Length = 1820
Score = 1002 bits (2591), Expect = 0.0
Identities = 498/524 (95%), Positives = 517/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDP+PTST+I+ED+DFVR+
Sbjct: 1132 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPEPTSTIIDEDIDFVRA 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMN E+PKG+M DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1252 KLILRIRIMNAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FD EGFK E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRRSLLDE
Sbjct: 1312 FDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAV+AE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYMDGLDFGMTP
Sbjct: 1432 AAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1492 SRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_009363439.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Pyrus x
bretschneideri]
Length = 1820
Score = 1002 bits (2591), Expect = 0.0
Identities = 498/524 (95%), Positives = 517/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDP+PTST+I+ED+DFVR+
Sbjct: 1132 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPEPTSTIIDEDIDFVRA 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMN E+PKG+M DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1252 KLILRIRIMNAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FD EGFK E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRRSLLDE
Sbjct: 1312 FDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAV+AE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYMDGLDFGMTP
Sbjct: 1432 AAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1492 SRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_008337428.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit 1-like [Malus domestica]
Length = 1763
Score = 999 bits (2584), Expect = 0.0
Identities = 497/524 (94%), Positives = 516/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDD LSVEAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDXLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLK EANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTST+IEED+DFV++
Sbjct: 1132 TPSLSVYLKXEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTVIEEDIDFVKA 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMN E+PKG+M DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1252 KLILRIRIMNAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FD+ EGFK E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRRSLLDE
Sbjct: 1312 FDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAV+AE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYMDGLDFGMTP
Sbjct: 1432 AAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1492 SRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_007203058.1| hypothetical protein PRUPE_ppa000093mg [Prunus persica]
gi|462398589|gb|EMJ04257.1| hypothetical protein
PRUPE_ppa000093mg [Prunus persica]
Length = 1844
Score = 999 bits (2583), Expect = 0.0
Identities = 498/524 (95%), Positives = 515/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDDLLSVEAQKNATLFF+ILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDP ST+IEEDVDFV S
Sbjct: 1132 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNS 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMN E+PKG++ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1252 KLILRIRIMNAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FD EGFK E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRRSLLDE
Sbjct: 1312 FDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAV+AE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYMDGLDFGMTP
Sbjct: 1432 AAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1492 SRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_010113285.1| DNA-directed RNA polymerase II subunit rpb1 [Morus notabilis]
gi|587949090|gb|EXC35292.1| DNA-directed RNA polymerase
II subunit rpb1 [Morus notabilis]
Length = 1866
Score = 998 bits (2581), Expect = 0.0
Identities = 498/524 (95%), Positives = 514/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPG+D LSVEAQKNATLFFNILLRSTFASKRVLEEYRLTRE FEWVIGEIESR
Sbjct: 1027 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREGFEWVIGEIESR 1086
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1087 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1146
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSV+LKPEA+KTKERAK VQCALEYTTLRSVTQATEVWYDPDP ST+I+EDVDFVRS
Sbjct: 1147 TPSLSVFLKPEASKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIDEDVDFVRS 1206
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKIN+EFDDDLTCIFNDDNAE
Sbjct: 1207 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINVEFDDDLTCIFNDDNAE 1266
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE+PKGD+ DE+AEDDVFLKKIESNMLTEM+LRGIPDINKVFIK+GKVNK
Sbjct: 1267 KLILRIRIMNDEAPKGDLTDEAAEDDVFLKKIESNMLTEMSLRGIPDINKVFIKHGKVNK 1326
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE +GFKPE EWMLDTEGVNLLAV+CHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDE
Sbjct: 1327 FDENDGFKPENEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDE 1386
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1387 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1446
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE DYLRGVTENIMLGQLAPIGTG C+LYLNDEMLKNAIELQLPSYMDGLDFGMTP
Sbjct: 1447 AAVYAETDYLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYMDGLDFGMTP 1506
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTPYHEG+MSP YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1507 SRSPVSGTPYHEGMMSPGYLLSPNLRLSPISDAQFSPYVGGMAF 1550
>ref|XP_008242006.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Prunus mume]
gi|645273710|ref|XP_008242007.1| PREDICTED: DNA-directed
RNA polymerase II subunit 1 [Prunus mume]
Length = 1844
Score = 996 bits (2576), Expect = 0.0
Identities = 497/524 (94%), Positives = 514/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDDLLSVEAQKNATLFF+ILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDLLSVEAQKNATLFFSILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLK EANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDP ST+IEEDVDFV S
Sbjct: 1132 TPSLSVYLKSEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVNS 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMN E+PKG++ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1252 KLILRIRIMNAEAPKGELVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FD EGFK E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRRSLLDE
Sbjct: 1312 FDPSEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAV+AE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYMDGLDFGMTP
Sbjct: 1432 AAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1492 SRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_008361350.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit 1-like [Malus domestica]
Length = 1712
Score = 996 bits (2575), Expect = 0.0
Identities = 496/524 (94%), Positives = 514/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDD LSVEAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 904 LQERLKVVPGDDXLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 963
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 964 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1023
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLK EANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTST+IEED+DFV++
Sbjct: 1024 TPSLSVYLKXEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTVIEEDIDFVKA 1083
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNA
Sbjct: 1084 YYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAX 1143
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMN E+PKG+M DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1144 KLILRIRIMNAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNK 1203
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FD EGFK E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRRSLLDE
Sbjct: 1204 FDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDE 1263
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1264 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1323
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAV+AE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYMDGLDFGMTP
Sbjct: 1324 AAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTP 1383
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1384 SRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1427
>ref|XP_008448514.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit 1 [Cucumis melo]
Length = 1837
Score = 996 bits (2574), Expect = 0.0
Identities = 498/524 (95%), Positives = 514/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPG+D LSVEAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKPEANKTKERAK VQCALEYTTLRSVTQATEVWYDPDP ST+IEED+DFV+S
Sbjct: 1132 TPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKS 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEEI P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE+PKG++ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNK
Sbjct: 1252 KLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE EGFKPE EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE
Sbjct: 1312 FDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE D+LRGVTENIMLGQLAPIGTG C+LYLNDEMLKNAIELQLPSY+DGLDFGMTP
Sbjct: 1432 AAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSP+SGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1492 SRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Vitis vinifera]
Length = 1848
Score = 993 bits (2568), Expect = 0.0
Identities = 491/524 (93%), Positives = 517/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDDL+S+EAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKP+ +KTKERAKNVQCALEYTTLRSVTQATEVWYDPDP ST+IEEDVDFV+S
Sbjct: 1132 TPSLSVYLKPDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKS 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE+PKG++ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1252 KLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE EGFKPE EWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE
Sbjct: 1312 FDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE D+LRGVTENIMLGQLAPIGTGDC+LYLND+ML++AIELQLPSYM+GLDFGMTP
Sbjct: 1432 AAVYAETDFLRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYMEGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSP++GTPYH+G+MSP+YLLSPNLRLSPI+DAQFSPYVGGMAF
Sbjct: 1492 SRSPITGTPYHDGMMSPNYLLSPNLRLSPITDAQFSPYVGGMAF 1535
>ref|XP_004287766.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Fragaria vesca
subsp. vesca] gi|764511805|ref|XP_011461993.1| PREDICTED:
DNA-directed RNA polymerase II subunit 1 [Fragaria vesca
subsp. vesca]
Length = 1842
Score = 992 bits (2565), Expect = 0.0
Identities = 493/524 (94%), Positives = 515/524 (98%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERL+VVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR
Sbjct: 1010 LQERLRVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 1069
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1070 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1129
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDP STLIEED+DFVRS
Sbjct: 1130 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTLIEEDLDFVRS 1189
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFD DLTCIFNDDNAE
Sbjct: 1190 YYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDGDLTCIFNDDNAE 1249
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMN+E+PKGD DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1250 KLILRIRIMNEETPKGDSQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNK 1309
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FD+ EGFK E EWMLDTEGVNLLAV+CH+DVDA+RTTSNHLIE+IEVLGIEAVRRSLLDE
Sbjct: 1310 FDQNEGFKAEQEWMLDTEGVNLLAVLCHDDVDAKRTTSNHLIEIIEVLGIEAVRRSLLDE 1369
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1370 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1429
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
A+V+AE D+LRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSY+DGLDFGMTP
Sbjct: 1430 ASVFAETDHLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYVDGLDFGMTP 1489
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTP+ +G+MSP+YLLSPN+R+SPISDAQFSPYVGGMAF
Sbjct: 1490 SRSPVSGTPFRDGMMSPNYLLSPNMRMSPISDAQFSPYVGGMAF 1533
>ref|XP_004146161.2| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Cucumis sativus]
gi|778674691|ref|XP_011650276.1| PREDICTED: DNA-directed
RNA polymerase II subunit 1 [Cucumis sativus]
gi|700200498|gb|KGN55631.1| hypothetical protein
Csa_3G002510 [Cucumis sativus]
Length = 1867
Score = 992 bits (2564), Expect = 0.0
Identities = 497/524 (94%), Positives = 513/524 (97%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPG+D LSVEAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKPEANKTKERAK VQCALEYTTLRSVTQATEVWYDPDP ST+IEED+DFV+S
Sbjct: 1132 TPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKS 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEEI P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE+PKG++ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVNK
Sbjct: 1252 KLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE EGFKPE EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE
Sbjct: 1312 FDENEGFKPEMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE D+LRGVTENIMLGQLAPIGTG C+LYLNDEMLKNAIELQLPSY+DGLDFGMTP
Sbjct: 1432 AAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSP+SGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1492 SRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_008337964.1| PREDICTED: DNA-directed RNA polymerase II subunit 1-like [Malus
domestica]
Length = 1820
Score = 989 bits (2558), Expect = 0.0
Identities = 494/524 (94%), Positives = 510/524 (97%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDD LSVEAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDXLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPS SVYLK EANKTKERAKNVQCALEYTTLRSVTQATEVWYDP PTST I ED+DFV +
Sbjct: 1132 TPSXSVYLKXEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPXPTSTXIXEDIDFVXA 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+NPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVNPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMN E+PKG+M DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1252 KLILRIRIMNAEAPKGEMVDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FD EGFK E EWMLDTEGVNLLAV+CH+DVDARRTTSNHLIE++E+LGIEAVRRSLLDE
Sbjct: 1312 FDPNEGFKAEQEWMLDTEGVNLLAVLCHDDVDARRTTSNHLIEILEILGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAV+AE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYMDGLDFGMTP
Sbjct: 1432 AAVFAETDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSPVSGTPYHEG+MSP+YLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1492 SRSPVSGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAF 1535
>ref|XP_010266907.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Nelumbo
nucifera]
Length = 1848
Score = 987 bits (2551), Expect = 0.0
Identities = 491/524 (93%), Positives = 511/524 (97%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPGDD LS+EAQKNATLFFNILLRSTFASKRVL+EYRLTREAFEWVIGEIESR
Sbjct: 1012 LQERLKVVPGDDFLSMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKPE NKTKERAKNVQCALEYTTLRSVTQATEVWYDPDP ST+IEEDVDFV+S
Sbjct: 1132 TPSLSVYLKPEVNKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKS 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1192 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE+PKG++ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+GKVNK
Sbjct: 1252 KLILRIRIMNDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE EGFKPE EWMLDTEGVNLLAVMCHEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDE
Sbjct: 1312 FDESEGFKPEVEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE D LRGVTENIMLGQLAPIGTGDC+LYLND+ML+ AIELQLPSYM+GLDFGMTP
Sbjct: 1432 AAVYAETDCLRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELQLPSYMEGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
SRSP+ GTPY+EG+MSPSYLLSPN RLSPI+DAQFSPYVGGMAF
Sbjct: 1492 SRSPIMGTPYNEGMMSPSYLLSPNARLSPITDAQFSPYVGGMAF 1535
>ref|XP_010029631.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 [Eucalyptus
grandis] gi|629090320|gb|KCW56573.1| hypothetical protein
EUGRSUZ_I02304 [Eucalyptus grandis]
Length = 1852
Score = 984 bits (2543), Expect = 0.0
Identities = 489/524 (93%), Positives = 511/524 (97%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPG+D LSVEAQKNATLFFNILLRSTFASKRVL+EYRLTREAF+WVIGEIESR
Sbjct: 1012 LQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFDWVIGEIESR 1071
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 1072 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1131
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYLKPE +KTKE AK VQCALEYTTLRSVTQATEVWYDPDPTST IEED+DFV+S
Sbjct: 1132 TPSLSVYLKPEVSKTKENAKTVQCALEYTTLRSVTQATEVWYDPDPTSTRIEEDIDFVKS 1191
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
Y EMPDEEI+P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDL CIFNDDNA+
Sbjct: 1192 YIEMPDEEISPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLNCIFNDDNAD 1251
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE PKG++NDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK
Sbjct: 1252 KLILRIRIMNDEVPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 1311
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
F+E +GFKPETEWMLDTEGVNLLAVMCHE VDA RTTSNHLIE+IEVLGIEAVRRSLLDE
Sbjct: 1312 FNENDGFKPETEWMLDTEGVNLLAVMCHEGVDATRTTSNHLIEIIEVLGIEAVRRSLLDE 1371
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLD
Sbjct: 1372 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLD 1431
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLK+AIELQLPSYMDGLDFGMTP
Sbjct: 1432 AAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKHAIELQLPSYMDGLDFGMTP 1491
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
+RSP+SGTPYHEG+MSPSYLLSPNLRLSP +DAQFSPYVGGMAF
Sbjct: 1492 ARSPISGTPYHEGMMSPSYLLSPNLRLSPTTDAQFSPYVGGMAF 1535
>ref|XP_007046588.1| DNA-directed RNA polymerase II subunit RPB1 isoform 5 [Theobroma
cacao] gi|508698849|gb|EOX90745.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 5 [Theobroma cacao]
Length = 1512
Score = 978 bits (2529), Expect = 0.0
Identities = 486/524 (92%), Positives = 510/524 (97%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPG D LSVEAQKNATLFF+ILLRST ASKRVL+EYRLT+EAFEWVIGEIESR
Sbjct: 663 LQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESR 722
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 723 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 782
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYL PEA+KTKE+AKNVQCALEYTTLRSVT ATEVWYDPDPTST+IEED+DFV+S
Sbjct: 783 TPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKS 842
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 843 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 902
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE PKG++NDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K +K
Sbjct: 903 KLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASK 962
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE +G+K EW+LDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE
Sbjct: 963 FDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1022
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1023 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1082
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYM+GL+FGMTP
Sbjct: 1083 AAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTP 1142
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
+RSPVSGTPYHEG+MSPSYLLSPNLRLSPI+DAQFSPYVGGMAF
Sbjct: 1143 ARSPVSGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1186
>ref|XP_007046587.1| DNA-directed RNA polymerase II subunit RPB1 isoform 4 [Theobroma
cacao] gi|508698848|gb|EOX90744.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 4 [Theobroma cacao]
Length = 1511
Score = 978 bits (2529), Expect = 0.0
Identities = 486/524 (92%), Positives = 510/524 (97%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPG D LSVEAQKNATLFF+ILLRST ASKRVL+EYRLT+EAFEWVIGEIESR
Sbjct: 663 LQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESR 722
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 723 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 782
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYL PEA+KTKE+AKNVQCALEYTTLRSVT ATEVWYDPDPTST+IEED+DFV+S
Sbjct: 783 TPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKS 842
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 843 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 902
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE PKG++NDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K +K
Sbjct: 903 KLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASK 962
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE +G+K EW+LDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE
Sbjct: 963 FDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1022
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1023 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1082
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYM+GL+FGMTP
Sbjct: 1083 AAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTP 1142
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
+RSPVSGTPYHEG+MSPSYLLSPNLRLSPI+DAQFSPYVGGMAF
Sbjct: 1143 ARSPVSGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1186
>ref|XP_007046584.1| DNA-directed RNA polymerase II subunit RPB1 isoform 1 [Theobroma
cacao] gi|590702281|ref|XP_007046585.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|590702285|ref|XP_007046586.1| DNA-directed RNA
polymerase II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698845|gb|EOX90741.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698846|gb|EOX90742.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
gi|508698847|gb|EOX90743.1| DNA-directed RNA polymerase
II subunit RPB1 isoform 1 [Theobroma cacao]
Length = 1861
Score = 978 bits (2529), Expect = 0.0
Identities = 486/524 (92%), Positives = 510/524 (97%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPG D LSVEAQKNATLFF+ILLRST ASKRVL+EYRLT+EAFEWVIGEIESR
Sbjct: 1013 LQERLKVVPGTDPLSVEAQKNATLFFSILLRSTLASKRVLQEYRLTKEAFEWVIGEIESR 1072
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 1073 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1132
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYL PEA+KTKE+AKNVQCALEYTTLRSVT ATEVWYDPDPTST+IEED+DFV+S
Sbjct: 1133 TPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPTSTIIEEDIDFVKS 1192
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1193 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1252
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE PKG++NDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K +K
Sbjct: 1253 KLILRIRIMNDEGPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASK 1312
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE +G+K EW+LDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE
Sbjct: 1313 FDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1372
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1373 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1432
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYM+GL+FGMTP
Sbjct: 1433 AAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTP 1492
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
+RSPVSGTPYHEG+MSPSYLLSPNLRLSPI+DAQFSPYVGGMAF
Sbjct: 1493 ARSPVSGTPYHEGMMSPSYLLSPNLRLSPITDAQFSPYVGGMAF 1536
>ref|XP_012491472.1| PREDICTED: DNA-directed RNA polymerase II subunit 1 isoform X2
[Gossypium raimondii]
Length = 1832
Score = 976 bits (2522), Expect = 0.0
Identities = 486/524 (92%), Positives = 509/524 (97%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPG D LSVEAQKNATLFF ILLRST ASKRVL+EYRLT+EAFEWVIGEIESR
Sbjct: 1013 LQERLKVVPGADPLSVEAQKNATLFFCILLRSTLASKRVLQEYRLTKEAFEWVIGEIESR 1072
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 1073 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1132
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYL PEA+KTKE+AKNVQCALEYTTLRSVT ATEVWYDPDP ST+IEED+DFV+S
Sbjct: 1133 TPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKS 1192
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1193 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1252
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE+PKG++NDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K +K
Sbjct: 1253 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASK 1312
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE +G+K EW+LDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE
Sbjct: 1313 FDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1372
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1373 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1432
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYM+GL+FGMTP
Sbjct: 1433 AAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTP 1492
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
+RSPVSGTPYHEG+MSPSYLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1493 ARSPVSGTPYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1536
>gb|KJB43259.1| hypothetical protein B456_007G190500 [Gossypium raimondii]
Length = 1809
Score = 976 bits (2522), Expect = 0.0
Identities = 486/524 (92%), Positives = 509/524 (97%)
Frame = +1
Query: 1 LQERLKVVPGDDLLSVEAQKNATLFFNILLRSTFASKRVLEEYRLTREAFEWVIGEIESR 180
LQERLKVVPG D LSVEAQKNATLFF ILLRST ASKRVL+EYRLT+EAFEWVIGEIESR
Sbjct: 1013 LQERLKVVPGADPLSVEAQKNATLFFCILLRSTLASKRVLQEYRLTKEAFEWVIGEIESR 1072
Query: 181 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIK 360
FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IK
Sbjct: 1073 FLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIK 1132
Query: 361 TPSLSVYLKPEANKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPTSTLIEEDVDFVRS 540
TPSLSVYL PEA+KTKE+AKNVQCALEYTTLRSVT ATEVWYDPDP ST+IEED+DFV+S
Sbjct: 1133 TPSLSVYLSPEASKTKEKAKNVQCALEYTTLRSVTHATEVWYDPDPMSTIIEEDIDFVKS 1192
Query: 541 YYEMPDEEINPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 720
YYEMPDEE+ P+KISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE
Sbjct: 1193 YYEMPDEEVAPEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAE 1252
Query: 721 KLILRIRIMNDESPKGDMNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKNGKVNK 900
KLILRIRIMNDE+PKG++NDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK+ K +K
Sbjct: 1253 KLILRIRIMNDEAPKGELNDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKHSKASK 1312
Query: 901 FDEIEGFKPETEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1080
FDE +G+K EW+LDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE
Sbjct: 1313 FDEADGYKTGEEWVLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDE 1372
Query: 1081 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1260
LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD
Sbjct: 1373 LRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLD 1432
Query: 1261 AAVYAERDYLRGVTENIMLGQLAPIGTGDCSLYLNDEMLKNAIELQLPSYMDGLDFGMTP 1440
AAVYAE DYLRGVTENIMLGQLAPIGTGDC+LYLNDEMLKNAIELQLPSYM+GL+FGMTP
Sbjct: 1433 AAVYAESDYLRGVTENIMLGQLAPIGTGDCALYLNDEMLKNAIELQLPSYMEGLEFGMTP 1492
Query: 1441 SRSPVSGTPYHEGLMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1572
+RSPVSGTPYHEG+MSPSYLLSPNLRLSPISDAQFSPYVGGMAF
Sbjct: 1493 ARSPVSGTPYHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAF 1536