BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Ziziphus21_contig00002024
         (4787 letters)

Database: ./nr 
           77,306,371 sequences; 28,104,191,420 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_010100046.1| RNA polymerase II C-terminal domain phosphat...  1382   0.0  
ref|XP_008390185.1| PREDICTED: RNA polymerase II C-terminal doma...  1238   0.0  
ref|XP_009378819.1| PREDICTED: RNA polymerase II C-terminal doma...  1236   0.0  
ref|XP_007043830.1| RNA polymerase II C-terminal domain phosphat...  1222   0.0  
ref|XP_009359893.1| PREDICTED: RNA polymerase II C-terminal doma...  1216   0.0  
ref|XP_008369646.1| PREDICTED: RNA polymerase II C-terminal doma...  1207   0.0  
ref|XP_011020855.1| PREDICTED: RNA polymerase II C-terminal doma...  1199   0.0  
ref|XP_012088736.1| PREDICTED: RNA polymerase II C-terminal doma...  1194   0.0  
ref|XP_012459417.1| PREDICTED: RNA polymerase II C-terminal doma...  1178   0.0  
ref|XP_010656786.1| PREDICTED: RNA polymerase II C-terminal doma...  1177   0.0  
ref|XP_002304648.2| hypothetical protein POPTR_0003s16280g [Popu...  1176   0.0  
gb|KDO83165.1| hypothetical protein CISIN_1g000897mg [Citrus sin...  1176   0.0  
ref|XP_006438860.1| hypothetical protein CICLE_v10030535mg [Citr...  1176   0.0  
gb|KDO83166.1| hypothetical protein CISIN_1g000897mg [Citrus sin...  1172   0.0  
ref|XP_010656789.1| PREDICTED: RNA polymerase II C-terminal doma...  1171   0.0  
ref|XP_010656784.1| PREDICTED: RNA polymerase II C-terminal doma...  1170   0.0  
ref|XP_012459418.1| PREDICTED: RNA polymerase II C-terminal doma...  1170   0.0  
ref|XP_004310239.2| PREDICTED: RNA polymerase II C-terminal doma...  1154   0.0  
ref|XP_008222368.1| PREDICTED: RNA polymerase II C-terminal doma...  1153   0.0  
ref|XP_011656791.1| PREDICTED: RNA polymerase II C-terminal doma...  1142   0.0  

>ref|XP_010100046.1| RNA polymerase II C-terminal domain phosphatase-like 3 [Morus
            notabilis] gi|587892642|gb|EXB81217.1| RNA polymerase II
            C-terminal domain phosphatase-like 3 [Morus notabilis]
          Length = 1301

 Score = 1382 bits (3576), Expect = 0.0
 Identities = 772/1252 (61%), Positives = 871/1252 (69%), Gaps = 15/1252 (1%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLY-NYSGYGRYNT 4141
            ASVEEISEEDFNKQ+     S       +S        D RVWTMRDLY NY G+  Y T
Sbjct: 22   ASVEEISEEDFNKQEGNGTGSGKVMSVSDSNSKESKFGDSRVWTMRDLYANYPGFRGYTT 81

Query: 4140 GLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXS--GRDESVNA----KEVDK 3979
            GLYNLAWAQAVQNKPLNEIFVM                     GR E  N     ++V+K
Sbjct: 82   GLYNLAWAQAVQNKPLNEIFVMDVDADDSSRVVLSSASPAVNSGRREGKNGVKEVEKVEK 141

Query: 3978 VVIDDSGXXXXXXXXXXXXXXXXXXXXXXEPVQK-AAQEPKEVALDCDPMNVGELDFDSR 3802
            VVIDDS                        P QK A +E K+  L+C+  NVG L+ DSR
Sbjct: 142  VVIDDSADEMEEGELEEGEIDLESE-----PTQKPAGEEAKDGDLNCEAENVGGLEVDSR 196

Query: 3801 NRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHS--EKQALVQ 3628
              +LEKRV  I E L SV+V +AEKSFE+VCS LQ  LE L GVL +   S   K  ++Q
Sbjct: 197  RDELEKRVDLIWETLGSVNVVNAEKSFEEVCSRLQRTLESLRGVLSEKEFSFPTKDVVIQ 256

Query: 3627 LSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSLGL 3448
            +S  AIQ VNS FCSM+ N+KEQ+K++LSRL  +VKN      SP Q KEIE MISSL  
Sbjct: 257  MSITAIQVVNSVFCSMSVNQKEQKKETLSRLFCSVKNCGTPLFSPEQTKEIELMISSLNP 316

Query: 3447 LSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTY--TKFALGSVSMASMDHGHAG 3274
            L+VLPS+  SDK+KE Q I+ + E DS     N  N +   T   L    +AS+ H +  
Sbjct: 317  LNVLPSSGASDKEKETQIIERLHEMDSNLTNANAENASIERTSVKLPQDCVASVVHSNPI 376

Query: 3273 TLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKS 3094
            TLP+ LR G    K RG+               LPSPTREAPSCFPV+K L V DG  K 
Sbjct: 377  TLPELLRPGTLAFKGRGLLLPLLDLHKDHDADSLPSPTREAPSCFPVYKPLGVADGIIKP 436

Query: 3093 GFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDAD 2914
              +T KVAP AEESRLH YETDALKAVS+YQQKFGR +  M+DRLPSPTPSEE +  D D
Sbjct: 437  VSTTAKVAPGAEESRLHRYETDALKAVSTYQQKFGRGSFLMSDRLPSPTPSEECDEED-D 495

Query: 2913 TNGEVSSSFTLSNLRTASTPILGQPVFSSPTLVNSASMQGPITTKNAAPVSSVSNPTVKA 2734
             N EVSSS T  NLRT + PIL   V +S   V+S +MQGPI  KNAAPV S SN T+KA
Sbjct: 496  INQEVSSSLTSGNLRTPAIPILRPSVVTSSVPVSSPTMQGPIAAKNAAPVGSGSNSTMKA 555

Query: 2733 SAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVNSRKQRTFDEPNMDGHLTK 2554
            SA++RDPRLRFANSD GALDLNQR L  VH+ PKVEP  P +SRKQR  +EPN+DG   K
Sbjct: 556  SARSRDPRLRFANSDAGALDLNQRPLTAVHNGPKVEPGDPTSSRKQRIVEEPNLDGPALK 615

Query: 2553 KQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDSRTPVSVVSCP- 2377
            +QR     ++I  D+KT +G GGWLED+   GPQ+ NKN  +ENAE D R  + +V+ P 
Sbjct: 616  RQRHAFVSAKI--DVKTASGVGGWLEDNGTTGPQIMNKNQLVENAEADPRKSIHLVNGPI 673

Query: 2376 -TNSPNVGNEQASVASTSTIASLPAILKDIAVNPTMLLNIL-KLGQQQRLAAEQQKSADP 2203
              N PN+G EQ  V  TST  +LPAILKDIAVNPT+ ++IL KLGQQQ LAA+ Q+ +D 
Sbjct: 674  MNNGPNIGKEQVPVTGTSTPDALPAILKDIAVNPTIFMDILNKLGQQQLLAADAQQKSDS 733

Query: 2202 ATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIASISPQDELNKIRMKP 2023
            +    H           PLVN A S AS ILQ PA +    SQ+A+ S QDEL KIRMKP
Sbjct: 734  SKNTTHPPGTNSILGAAPLVNVAPSKASGILQTPAVSLPTTSQVATASMQDELGKIRMKP 793

Query: 2022 RDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQEGQADKISALSQSVA 1843
            RDPRRVLHG+ LQKS S+GH+QFK IV   S T  NKDN NG  QEGQADK    SQ V 
Sbjct: 794  RDPRRVLHGNMLQKSWSLGHEQFKPIVSSVSCTPGNKDNLNGPVQEGQADKKQVPSQLVV 853

Query: 1842 PPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQRGDVRASVSNSEEQQ 1663
             PDI RQFTKNL+NIADLMSVSQAST P  VSQNLS+Q +PVK  RGDV+A V NSE+Q 
Sbjct: 854  QPDIARQFTKNLRNIADLMSVSQASTSPATVSQNLSSQPLPVKPDRGDVKAVVPNSEDQH 913

Query: 1662 SGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXXXXXEQKKMFAARKXX 1483
            SGT S P+  +A  SR+P+ WGDVEHLFEGYDD QK            EQKKMF A K  
Sbjct: 914  SGTNSTPETTLAVPSRTPNAWGDVEHLFEGYDDEQKAAIQRERARRLEEQKKMFDAHKLC 973

Query: 1482 XXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLAHMGMWTKLRPGIWNF 1303
                     LNSAKFVEVD VHDEILRKKEEQDREKPQRHL+R  HMGMWTKLRPG+WNF
Sbjct: 974  LVLDLDHTLLNSAKFVEVDSVHDEILRKKEEQDREKPQRHLFRFPHMGMWTKLRPGVWNF 1033

Query: 1302 LEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDDGDLVDGDERVPKSKD 1123
            LEKASKLYELHLYTMGNKLYATEMAK+LDP G LFSGRVIS+GDDGD  DGDERVPKSKD
Sbjct: 1034 LEKASKLYELHLYTMGNKLYATEMAKVLDPMGTLFSGRVISRGDDGDPFDGDERVPKSKD 1093

Query: 1122 LEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFSLPGLSLLEIDHDERA 943
            LEGVLGMES+VVIIDDSV+VWPHNKLNLIVVERY YFPCSRRQF LPG SLLEIDHDER 
Sbjct: 1094 LEGVLGMESSVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERP 1153

Query: 942  EDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGCRIVFSRVFPVDEVNP 763
            E GTLASSLAVIE+IHQNFFSH  LDEVDVRNILASEQ+KILAGCRIVFSRVFPV EVNP
Sbjct: 1154 EQGTLASSLAVIEKIHQNFFSHHSLDEVDVRNILASEQRKILAGCRIVFSRVFPVSEVNP 1213

Query: 762  HLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGRFVVHPGW 607
            HL+  WQTAEQFGAVCT QIDDQVTHVVA S GTDKVNWAL+ G+F VHPGW
Sbjct: 1214 HLHPLWQTAEQFGAVCTTQIDDQVTHVVANSPGTDKVNWALANGKFAVHPGW 1265


>ref|XP_008390185.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Malus domestica]
          Length = 1293

 Score = 1238 bits (3204), Expect = 0.0
 Identities = 729/1283 (56%), Positives = 855/1283 (66%), Gaps = 27/1283 (2%)
 Frame = -3

Query: 4314 SVEEISEEDFNKQD------VVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLYNYSGYG 4153
            SVEEISEEDF KQ+      VV  +     D  +S     GG D RVWTMRD+YNY G+ 
Sbjct: 46   SVEEISEEDFVKQEKQQEVKVVVPLPPPPKDQSKSN----GGDDARVWTMRDIYNYPGFR 101

Query: 4152 RYNTGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDKVV 3973
             Y +GL NLAWAQAVQNKPLN++  +                  S R    NAKEVD VV
Sbjct: 102  GYRSGLVNLAWAQAVQNKPLNQLLQVNDPDEKLKRSSSSPSLISSERS---NAKEVDGVV 158

Query: 3972 IDDSGXXXXXXXXXXXXXXXXXXXXXXEPVQK---AAQEPKEVALDCDPMNVGELDFDSR 3802
            I DSG                          +   AA+E ++  L CD M+V     D+ 
Sbjct: 159  IVDSGDEMDAEKEEGELEEGEIDLDSEPADGENTAAAEEARDGVLVCDDMDV-----DNS 213

Query: 3801 NRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQALVQLS 3622
               L+KRV SIREAL SV+V +AEKSF  VC  L N LE L GVL +   S K+ALVQ S
Sbjct: 214  ETGLKKRVSSIREALESVTVNEAEKSFGDVCLQLLNTLESLRGVLSETNVSTKEALVQPS 273

Query: 3621 FVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSLGLLS 3442
            F A+QA++S FCSM  ++KEQ KD +SR+LS+VKN     L+P Q+KEI  MISS+    
Sbjct: 274  FTAVQAISSVFCSMRPDQKEQNKDIISRVLSSVKNDP-PLLAPEQIKEIGVMISSVDSPD 332

Query: 3441 VLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAGTLPD 3262
            V   TR +    E+Q I GV  ++S  +    S      FA  S ++ S  + +   L +
Sbjct: 333  VFLQTRAAITDNEIQVIGGVNNKNSEAVHAGSS----ANFA--SDTVVSGVYSNPFVLSE 386

Query: 3261 ALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKSGFST 3082
              R G+  +K R V               LPSPTRE+PSCFPV  TL V D   K    T
Sbjct: 387  VPRPGVSILKGRRVVLPLLDTHKDHDADSLPSPTRESPSCFPVQNTLVVTDRMVKPQPDT 446

Query: 3081 PKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDADTNGE 2902
             +V P+A  S LH Y+TDALKAVS+YQQ   R++  M++RLPSPTPSE+ +NGD DT GE
Sbjct: 447  SRVTPNAGGSGLHPYDTDALKAVSTYQQ-INRTSFFMSERLPSPTPSEDGDNGDDDTVGE 505

Query: 2901 VSSSFTLSNLRTASTPILGQPVFSS-PTLVNSASMQGPITTKNAAPVSSVSNPTVKASAK 2725
            +SSS   SNLRT   PI GQ V S  P  V S+SMQ   T K+AAP SS SN T+KA  +
Sbjct: 506  ISSSCA-SNLRTGP-PISGQQVVSPFPIPVGSSSMQERFTGKSAAPASSGSNITIKAPTR 563

Query: 2724 NRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVNSRKQRTFDEPNMDGHLTKKQR 2545
            NRDPRLR +NSD+GAL+LN + L  VHSAPKV+ ++ ++SRKQ+  ++   DG   K+QR
Sbjct: 564  NRDPRLRLSNSDMGALNLNPQPLT-VHSAPKVDSVITLSSRKQKPLEDSKFDGPALKRQR 622

Query: 2544 MGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDSRTPVSVVSCPT--- 2374
              L+ S  V D KT +GSGGWLED   +GP L +KN  +EN + D R  V+ VS  +   
Sbjct: 623  NTLDNSGFVKDPKTASGSGGWLEDIGGVGPHLISKNQTVENTQSDPRQVVNDVSSSSTAD 682

Query: 2373 ---NSPNVGNEQASVASTSTIASLPA----------ILKDIAVNPTMLLNILKLGQQQRL 2233
               N PN  NE  SV   ST ASLPA          I KDIAVNPTMLLNILKLGQQQRL
Sbjct: 683  GNSNGPNSSNEPLSVMDLST-ASLPALVKDIAVNSAIFKDIAVNPTMLLNILKLGQQQRL 741

Query: 2232 AAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIASISP 2056
            AAE QQK+ADP     +             V+   S  + +LQ  AGT  V SQ A   P
Sbjct: 742  AAEAQQKAADPEKSMTNPISSSSILRSNASVS-VPSKTTAMLQTLAGTLPVSSQKA---P 797

Query: 2055 QDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQEGQA 1876
             DE  K+RMKPRDPRRVLH + LQK+GS+G +QF+NIV P S ++ NKDN NGQ  +GQA
Sbjct: 798  TDESGKVRMKPRDPRRVLHANALQKNGSLGQEQFRNIVTPLSSSQGNKDNLNGQXHDGQA 857

Query: 1875 DKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQRGDV 1696
            D     SQSV  PDI RQFTKNLKNIAD+MSVS  ST P I SQ++S+Q VP+K++R D 
Sbjct: 858  DMKLVTSQSVEAPDIARQFTKNLKNIADIMSVSNGSTSPAIASQSVSSQPVPIKNERIDP 917

Query: 1695 RASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXXXXXE 1516
            +     +EEQ +G+ISA + A A  S S   WGDVEHLFEGYDD QK            E
Sbjct: 918  K-----TEEQGTGSISASEAAAACPSPSAPMWGDVEHLFEGYDDQQKAAIQRERARRIEE 972

Query: 1515 QKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLAHMGM 1336
            QKKMFAARK           LNSAKF+EVDPVHDEILRKKEEQDREKPQRHL+R  HMGM
Sbjct: 973  QKKMFAARKLCLVLDLDHTLLNSAKFIEVDPVHDEILRKKEEQDREKPQRHLFRFHHMGM 1032

Query: 1335 WTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDDGDLV 1156
            WTKLRPG+WNFLE+AS+L+ELHLYTMGNKLYATEMAK+LDP G LF+GRVIS+GDDGD  
Sbjct: 1033 WTKLRPGVWNFLERASQLFELHLYTMGNKLYATEMAKVLDPTGVLFAGRVISRGDDGDPD 1092

Query: 1155 DGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFSLPGL 976
            DGD   PKSKDLEGVLGMESAVVIIDDSV+VWPHNK+NLIVVERY YFPCSRRQF L G 
Sbjct: 1093 DGD--APKSKDLEGVLGMESAVVIIDDSVRVWPHNKMNLIVVERYTYFPCSRRQFGLLGP 1150

Query: 975  SLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGCRIVF 796
            SLLEIDHDER EDGTLASSL+VIE++HQ FFSH  LDE DVRNILASEQ+KIL GCRIVF
Sbjct: 1151 SLLEIDHDERQEDGTLASSLSVIEKMHQIFFSHPSLDEADVRNILASEQRKILNGCRIVF 1210

Query: 795  SRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGRFVVH 616
            SRVFPV EVNPHL+  WQTAEQFGAVCTN IDDQVTHVVA SLGTDKVNWA+S+G+FVVH
Sbjct: 1211 SRVFPVGEVNPHLHPLWQTAEQFGAVCTNYIDDQVTHVVANSLGTDKVNWAISSGKFVVH 1270

Query: 615  PGWLEASALLYRRANEQDFAIKP 547
            PGW+EASALLYRRANEQDFAIKP
Sbjct: 1271 PGWVEASALLYRRANEQDFAIKP 1293


>ref|XP_009378819.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Pyrus x bretschneideri]
          Length = 1294

 Score = 1236 bits (3199), Expect = 0.0
 Identities = 731/1283 (56%), Positives = 856/1283 (66%), Gaps = 27/1283 (2%)
 Frame = -3

Query: 4314 SVEEISEEDFNKQDVVTKVSKDSSDYKESKPISK--GGSDGRVWTMRDLYNYSGYGRYNT 4141
            SVEEISEEDF KQ+   +V          K  SK  GG D RVWTMRD+YNY G+  Y +
Sbjct: 46   SVEEISEEDFVKQEKQQEVKVVVPPPPPPKDQSKSNGGDDARVWTMRDIYNYPGFRGYRS 105

Query: 4140 GLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDKVVIDDS 3961
            GL NLAWAQAVQNKPLN++  +                  S R    NAKEVD VVI DS
Sbjct: 106  GLVNLAWAQAVQNKPLNQLLQVNDPDEKLKRSSSSPSVISSERS---NAKEVDGVVIVDS 162

Query: 3960 GXXXXXXXXXXXXXXXXXXXXXXEPVQK---AAQEPKEVALDCDPMNVGELDFDSRNRKL 3790
            G                          +    A+E ++  L CD M+V     D+    L
Sbjct: 163  GDEMDAEKEEGELEEGEIDLDSEPADGENTATAEEARDGVLVCDDMDV-----DNSETGL 217

Query: 3789 EKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQALVQLSFVAI 3610
            + RV SIREAL SV+V +AEKSF  VC  L N LE L GVL +   S K+ALVQLSF A+
Sbjct: 218  KMRVSSIREALESVTVNEAEKSFGDVCLQLLNTLEILRGVLSETNVSTKEALVQLSFTAV 277

Query: 3609 QAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSLGLLSVLPS 3430
            QA++S FCSM  ++KEQ KD +SR+LS+VKN     L+  Q+KEI  MISSL    V   
Sbjct: 278  QAISSVFCSMRPDQKEQNKDIISRVLSSVKNDP-PLLASEQIKEIGVMISSLDSPDVFLQ 336

Query: 3429 TRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAGTLPDALRT 3250
            TR      E+Q I GV   +S  +    S      FA  S ++ S  + +        + 
Sbjct: 337  TRAGITDNEIQVIGGVNNTNSEAVNAGSS----ANFA--SDTVVSGVYSNPFMFSKVPKP 390

Query: 3249 GMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKSGFSTPKVA 3070
            G+  +K R V               LPSPTRE+PSCFPV  TL V D   K    T +V 
Sbjct: 391  GVSILKGRRVVLPLLDTHKDHDADSLPSPTRESPSCFPVQNTLVVTDRMVKPRPDTSRVT 450

Query: 3069 PDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDADTNGEVSSS 2890
            P+A  S LH Y+TDA+KAVS+YQQ   R++  M++RLPSPTPSE+ +NGD DT GEVSSS
Sbjct: 451  PNAGGSGLHPYDTDAIKAVSTYQQ-INRTSFFMSERLPSPTPSEDGDNGDDDTVGEVSSS 509

Query: 2889 FTLSNLRTASTPILGQPVFS-SPTLVNSASMQGPITTKNAAPVSSVSNPTVKASAKNRDP 2713
             + SNLR++  PILGQ V S SP  V S+SMQ   T K+AAP SS SN T+KA  +NRDP
Sbjct: 510  -SASNLRSSVPPILGQQVVSPSPIPVVSSSMQERFTGKSAAPGSSGSNITIKAPTRNRDP 568

Query: 2712 RLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVNSRKQRTFDEPNMDGHLTKKQRMGLE 2533
            RLRF+NSD+GAL+ N + L  VH+APKV+ ++ ++SRKQ+  ++   DG   K+QR  L+
Sbjct: 569  RLRFSNSDMGALNPNPQPLT-VHNAPKVDSVITLSSRKQKPLEDSKFDGPALKRQRNTLD 627

Query: 2532 KSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDSRTPVS-VVSCPT-----N 2371
             S  V D KT +GSGGWLED   +GP L +KN  +EN   D R  V+ V SC T     N
Sbjct: 628  NSGFVKDPKTASGSGGWLEDIGGVGPHLISKNQTVENTVSDPRQVVNDVSSCSTADGNSN 687

Query: 2370 SPNVGNEQASVASTSTIASLPA----------ILKDIAVNPTMLLNILKLGQQQRLAAE- 2224
              N  NE  SV   ST ASLPA          I KDIAVNPTMLLNILKLGQQQRLAAE 
Sbjct: 688  GANSSNEHLSVTDLST-ASLPALVKDIAVNSAIFKDIAVNPTMLLNILKLGQQQRLAAEA 746

Query: 2223 QQKSADPATIAIHXXXXXXXXXXXPLVNNAS----SMASKILQIPAGTPAVPSQIASISP 2056
            QQKSADP     +            L +NAS    S  + +LQ  AGT  V SQ A   P
Sbjct: 747  QQKSADPEKSMTNPISSSSI-----LRSNASVDIPSKTTAMLQTLAGTLPVSSQKA---P 798

Query: 2055 QDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQEGQA 1876
             DE  K+RMKPRDPRRVLHG+ LQKSGS+G +QF+NIV P S ++ NKDN NGQK +GQ 
Sbjct: 799  TDESGKVRMKPRDPRRVLHGNALQKSGSLGQEQFRNIVTPLSSSQGNKDNLNGQKHDGQV 858

Query: 1875 DKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQRGDV 1696
            D     SQSV  PDI RQFTKNLKNIAD++SVS  ST PT+ SQ++S+Q VP+K++R D 
Sbjct: 859  DMKLVTSQSVEAPDIARQFTKNLKNIADIISVSNGSTSPTLASQSVSSQPVPIKTERIDP 918

Query: 1695 RASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXXXXXE 1516
            +     +EEQ +G+ISA + A AG   S   WGDVEHLFEGYDD QK            E
Sbjct: 919  K-----TEEQGTGSISASEAAAAGPPHSAPMWGDVEHLFEGYDDQQKAAIQRERARRIEE 973

Query: 1515 QKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLAHMGM 1336
            QKKMFAARK           LNSAKF+EVDPVHDEILRKKEEQDREKPQRHL+R  HMGM
Sbjct: 974  QKKMFAARKLCLVLDLDHTLLNSAKFIEVDPVHDEILRKKEEQDREKPQRHLFRFHHMGM 1033

Query: 1335 WTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDDGDLV 1156
            WTKLRPG+WNFLE+AS+L+ELHLYTMGNKLYATEMAK+LDP G LF+GRVIS+GDDGD  
Sbjct: 1034 WTKLRPGVWNFLERASQLFELHLYTMGNKLYATEMAKVLDPTGVLFAGRVISRGDDGDPD 1093

Query: 1155 DGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFSLPGL 976
            DGD   PKSKDLEGVLGMESAVVIIDDSV+VWPHNK+NLIVVERY YFPCSRRQF L G 
Sbjct: 1094 DGD--APKSKDLEGVLGMESAVVIIDDSVRVWPHNKMNLIVVERYTYFPCSRRQFGLLGP 1151

Query: 975  SLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGCRIVF 796
            SLLEIDHDER EDGTLASSL+VIE++HQ FFSH  LDE DVRNILASEQ+KIL GCRI+F
Sbjct: 1152 SLLEIDHDERQEDGTLASSLSVIEKMHQIFFSHPSLDEADVRNILASEQRKILNGCRILF 1211

Query: 795  SRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGRFVVH 616
            SRVFPV EVNPHL+  WQTAEQFGAVCTN IDDQVTHVVA SLGTDKVNWA+S+G+FVVH
Sbjct: 1212 SRVFPVGEVNPHLHPLWQTAEQFGAVCTNYIDDQVTHVVANSLGTDKVNWAISSGKFVVH 1271

Query: 615  PGWLEASALLYRRANEQDFAIKP 547
            PGW+EASALLYRRANEQDFAIKP
Sbjct: 1272 PGWVEASALLYRRANEQDFAIKP 1294


>ref|XP_007043830.1| RNA polymerase II C-terminal domain phosphatase-like 3, putative
            [Theobroma cacao] gi|508707765|gb|EOX99661.1| RNA
            polymerase II C-terminal domain phosphatase-like 3,
            putative [Theobroma cacao]
          Length = 1290

 Score = 1222 bits (3163), Expect = 0.0
 Identities = 730/1328 (54%), Positives = 856/1328 (64%), Gaps = 30/1328 (2%)
 Frame = -3

Query: 4440 VSWSGIIIKEIEETPSMMGKXXXXXXXXXXXXXXXXXXXXSASVEEISEEDFNKQDVVTK 4261
            + WS +  K+ EET   MGK                     AS+EEISEEDFNKQDV  K
Sbjct: 9    IEWSKL--KKNEETLGEMGKDETKVEDVEEGEISDS-----ASIEEISEEDFNKQDV--K 59

Query: 4260 VSKDSSDYKESKPISKGG---SDGRVWTMRDLYNYSGYGR-YNTGLYNLAWAQAVQNKPL 4093
            + K+S         SKGG   S+ RVWTM+DL  Y    R Y +GLYN AWAQAVQNKPL
Sbjct: 60   ILKESKS-------SKGGEANSNSRVWTMQDLCKYPSVIRGYASGLYNFAWAQAVQNKPL 112

Query: 4092 NEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKE--------VDKVVIDDSGXXXXXXX 3937
            NEIFV                   S    SVN+KE          KVVIDD         
Sbjct: 113  NEIFVKDFEQPQQDENKNSKRSSPSSSVASVNSKEEKGSSGNLAVKVVIDDDSEDEMEED 172

Query: 3936 XXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDPMNVGELDFDSRNRKLEKRVHSIREAL 3757
                           E       EPKE  L  +  NVG  D      +LEKR + IR  L
Sbjct: 173  KVVNLDKEEGELEEGE--IDLDSEPKEKVLSSEDGNVGNSD------ELEKRANLIRGVL 224

Query: 3756 VSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQALVQLSFVAIQAVNSAFCSMN 3577
              V+V +AEKSFE VCS L N LE L  ++L+     K AL+QL+F    A+NSAF ++N
Sbjct: 225  EGVTVIEAEKSFEGVCSRLHNALESLRALILECSVPAKDALIQLAF---GAINSAFVALN 281

Query: 3576 QNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSLGLLSVLPSTRVSDKQKELQ 3397
             N KEQ    LSRLLS VK        P +MKEI+ M     L+S+    R  D +K+++
Sbjct: 282  CNSKEQNVAILSRLLSIVKGHDPSLFPPDKMKEIDVM-----LISLNSPARAIDTEKDMK 336

Query: 3396 DIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAGTLPDALRTGMPGVKSRGVX 3217
             +DGV ++D   + EN  +       L S S   + +     L + L+ G+P  ++RG+ 
Sbjct: 337  VVDGVNKKDPDALPENICHDLTVTNKLPS-SAKFVINNKPNALTETLKPGVPNFRNRGIS 395

Query: 3216 XXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKSGFSTPKVAPDAEESRLHHY 3037
                          LPSPTRE   C PV K L  GD   KSGF T K + DAE  +LH Y
Sbjct: 396  LPLLDLHKDHDADSLPSPTRETTPCLPVNKPLTSGDVMVKSGFMTGKGSHDAEGDKLHPY 455

Query: 3036 ETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDADTNGEVSSSFTLSNLRTAST 2857
            ETDALKA S+YQQKFG+ +   +DRLPSPTPSEE  +   D  GEVSSS ++ N +  + 
Sbjct: 456  ETDALKAFSTYQQKFGQGSFFSSDRLPSPTPSEESGDEGGDNGGEVSSSSSIGNFK-PNL 514

Query: 2856 PILGQPVFSSPTLVNSA--SMQGPITTKNAAPVSSVSNPTVKASAKNRDPRLRFANSDVG 2683
            PILG P+ SS  LV+SA  S+QG ITT+NA P+SSVSN   K+ AK+RDPRL FANS+  
Sbjct: 515  PILGHPIVSSAPLVDSASSSLQGQITTRNATPMSSVSNIVSKSLAKSRDPRLWFANSNAS 574

Query: 2682 ALDLNQRTLPMVHSAPKVEPIVPV-NSRKQRTFDEPNMDGHLTKKQRMGLEKSRIVSDIK 2506
            ALDLN+R   ++H+A KV P+  + +SRK+++ +EP +D    K+QR  LE   +  D++
Sbjct: 575  ALDLNER---LLHNASKVAPVGGIMDSRKKKSVEEPILDSPALKRQRNELENLGVARDVQ 631

Query: 2505 TVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDSR------TPVSVVSCPTNSPNVGNEQA 2344
            TV+G GGWLED+  +G Q++N+N   EN E +SR      T  S +S  TN     NEQ 
Sbjct: 632  TVSGIGGWLEDTDAIGSQITNRNQTAENLESNSRKMDNGVTSSSTLSGKTNITVGTNEQV 691

Query: 2343 SVASTSTIASLPAILKDIAVNPTMLLNILKLGQQQRLAAE-QQKSADPATIAIH------ 2185
             V STST  SLPA+LKDIAVNPTML+NILK+GQQQRL AE QQKS DP     H      
Sbjct: 692  PVTSTST-PSLPALLKDIAVNPTMLINILKMGQQQRLGAEAQQKSPDPVKSTFHQPSSNS 750

Query: 2184 --XXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIASISPQDELNKIRMKPRDPR 2011
                         P VNN  S++S I   PAG   VPS        DE  KIRMKPRDPR
Sbjct: 751  LLGVVSSTNVIPSPSVNNVPSISSGISSKPAGNLQVPS-------PDESGKIRMKPRDPR 803

Query: 2010 RVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQEGQADKISALSQSVAPPDI 1831
            RVLHG++LQ+SGSMG DQ K     +S T+ +KDN N QK + Q +     SQ V PPDI
Sbjct: 804  RVLHGNSLQRSGSMGLDQLKTNGALTSSTQGSKDNLNAQKLDSQTESKPMQSQLVPPPDI 863

Query: 1830 TRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQRGDVRASVSNSEEQQSGTI 1651
            T+QFT NLKNIAD+MSVSQA T    VS NL  Q V +KS   D++A VSNSE+QQ+G  
Sbjct: 864  TQQFTNNLKNIADIMSVSQALTSLPPVSHNLVPQPVLIKSDSMDMKALVSNSEDQQTGAG 923

Query: 1650 SAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXXXXXEQKKMFAARKXXXXXX 1471
             AP+    G  RS + WGDVEHLFE YDD QK            EQKKMF+ARK      
Sbjct: 924  LAPEAGATG-PRSQNAWGDVEHLFERYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLD 982

Query: 1470 XXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLAHMGMWTKLRPGIWNFLEKA 1291
                 LNSAKF+EVDPVH+EILRKKEEQDREKP+RHL+R  HMGMWTKLRPGIWNFLEKA
Sbjct: 983  LDHTLLNSAKFIEVDPVHEEILRKKEEQDREKPERHLFRFHHMGMWTKLRPGIWNFLEKA 1042

Query: 1290 SKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDDGDLVDGDERVPKSKDLEGV 1111
            SKLYELHLYTMGNKLYATEMAK+LDP G LF+GRVIS+GDDGD  DGDERVP+SKDLEGV
Sbjct: 1043 SKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPFDGDERVPRSKDLEGV 1102

Query: 1110 LGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFSLPGLSLLEIDHDERAEDGT 931
            LGMESAVVIIDDSV+VWPHNKLNLIVVERY YFPCSRRQF L G SLLEIDHDER EDGT
Sbjct: 1103 LGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDERPEDGT 1162

Query: 930  LASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGCRIVFSRVFPVDEVNPHLNH 751
            LASSLAVIERIHQ+FFSHQ LD+VDVRNILASEQ+KILAGCRIVFSRVFPV E NPHL+ 
Sbjct: 1163 LASSLAVIERIHQDFFSHQNLDDVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHP 1222

Query: 750  YWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGRFVVHPGWLEASALLYRRAN 571
             WQTAEQFGAVCTNQID+ VTHVVA SLGTDKVNWALSTG+FVVHPGW+EASALLYRRAN
Sbjct: 1223 LWQTAEQFGAVCTNQIDEHVTHVVANSLGTDKVNWALSTGKFVVHPGWVEASALLYRRAN 1282

Query: 570  EQDFAIKP 547
            E DFAIKP
Sbjct: 1283 EVDFAIKP 1290


>ref|XP_009359893.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Pyrus x bretschneideri]
          Length = 1278

 Score = 1216 bits (3147), Expect = 0.0
 Identities = 710/1275 (55%), Positives = 832/1275 (65%), Gaps = 19/1275 (1%)
 Frame = -3

Query: 4314 SVEEISEEDFNKQDV---VTKVSKDSSDYKESKPISKGGSDGRVWTMRDLYNYSGYGRYN 4144
            SVEEISEEDF KQ+    V  V        +SK  S GG D RVWTMRD+YN+ G+  Y 
Sbjct: 43   SVEEISEEDFIKQEKQHEVKVVVPRPPPNDQSK--SNGGDDARVWTMRDIYNHPGFRGYR 100

Query: 4143 TGLYNLAWAQAVQNKPLNEIFV---MXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDKVV 3973
             GL +LAWAQAVQNKPLN+  +   +                      E  NAKEVD+VV
Sbjct: 101  PGLVSLAWAQAVQNKPLNQKPLNQFLQMNVDPDEKLKRSSSLPSVNSPERSNAKEVDRVV 160

Query: 3972 IDDSGXXXXXXXXXXXXXXXXXXXXXXEPVQK-----AAQEPKEVALDCDPMNVGELDFD 3808
            I DSG                          +      A E  +  LDC  MN+   +  
Sbjct: 161  IVDSGDEMDAEKEEGELEEGEIDLDSEASGDEKAAAGVADEAGDGVLDCGNMNIDNPETG 220

Query: 3807 SRNRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQALVQ 3628
             +N KLEKRV SIR+AL SV+  +AEKSF  VC  L N L  L GVL +   S K+ALV 
Sbjct: 221  LKNEKLEKRVSSIRKALASVTRNEAEKSFVDVCLQLLNTLVSLRGVLSETNVSTKEALVH 280

Query: 3627 LSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSLGL 3448
            LSF A+QA+ S FCSM   +KEQ +D +SRLLS+VKN      +P Q+KEI  + S +  
Sbjct: 281  LSFTAVQAITSVFCSMRPVQKEQNEDIISRLLSSVKNDP-PLFTPEQIKEIGVLTSLVDS 339

Query: 3447 LSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAGTL 3268
              V   T+   K  E+Q I    +   A+     S+  Y+   +               L
Sbjct: 340  PDVFLQTKAGIKDDEIQVIGFNNKNSDASAVNATSSANYSNPIM---------------L 384

Query: 3267 PDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKSGF 3088
             +  R+G+  +K R V               LPSPTRE+PSCFPV  TL   D   K   
Sbjct: 385  SEVPRSGVSSLKGRRVVLPLLDTHKDHDADSLPSPTRESPSCFPVQNTLVFTDRMVKPEP 444

Query: 3087 STPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDADTN 2908
             T + AP AE S LH Y+TDALKAVS+YQ    RS+  M++RLPSPTPSE+ + GD DT 
Sbjct: 445  DTSR-APSAEGSGLHPYDTDALKAVSTYQH-INRSSFFMSERLPSPTPSEDGDKGDDDTV 502

Query: 2907 GEVSSSFTLSNLRTASTPILGQPVFSS-PTLVNSASMQGPITTKNAAPVSSVSNPTVKAS 2731
            GEVSSS + SNLRT+  PILGQ V S  P  V S+SMQG  T K+AAP SS SN T+KA 
Sbjct: 503  GEVSSSSSASNLRTSVPPILGQQVVSPFPIPVGSSSMQGRFTGKSAAPASSGSNITIKAP 562

Query: 2730 AKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVNSRKQRTFDEPNMDGHLTKK 2551
             +NRDPRLRF+NSDVG L+ N + L  VHSAPK++ ++ ++SRKQ+  ++   DG   K+
Sbjct: 563  TRNRDPRLRFSNSDVGVLNHNPQPLT-VHSAPKIDSVITLSSRKQKPIEDSKFDGPALKR 621

Query: 2550 QRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDSRTPVSVVSCPT- 2374
            QR  L  S  V D KT +GS GWLED  + GP L + N  +EN   D R  V+VVS P+ 
Sbjct: 622  QRNTLGNSGFVKDPKTASGSCGWLEDIGDFGPHLISNNQTVENTLSDPRKVVNVVSSPST 681

Query: 2373 -----NSPNVGNEQASVASTSTIASLPAILKDIAVNPTMLLNILKLGQQQRLAAEQQ-KS 2212
                 N PN  NE  ++   ST ASLPA+LK  AVNPTMLLNILKLGQQQRLAAE Q KS
Sbjct: 682  VDGNSNGPNSSNEHVALTDLST-ASLPALLK--AVNPTMLLNILKLGQQQRLAAEAQPKS 738

Query: 2211 ADPATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIASISPQDELNKIR 2032
            A P     H             VN  S  A+ +  +P     + SQ A   P DE  K+R
Sbjct: 739  AYPEKSMTHPISSNSIPGSDASVNVPSKTAAMLQTLP-----ISSQKA---PMDESGKVR 790

Query: 2031 MKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQEGQADKISALSQ 1852
            MKPRDPRR+LHG+ LQKSGS+G +QF+NIV P   ++ NKDN  G+KQ+GQ+D     SQ
Sbjct: 791  MKPRDPRRILHGNVLQKSGSLGQEQFRNIVTPLPSSQGNKDNLTGEKQDGQSDMKLVTSQ 850

Query: 1851 SVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQRGDVRASVSNSE 1672
            SV  PDI RQFTKNLKNIAD+MSVS   T P I SQ++ +Q VP+ S+R D     S +E
Sbjct: 851  SVEAPDIARQFTKNLKNIADMMSVSNGLTSPAIASQSVPSQPVPINSERID-----SKAE 905

Query: 1671 EQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXXXXXEQKKMFAAR 1492
            EQ++G+ SA + A AG SRS   WGDVEHLFEGYDD QK            EQKKMFAAR
Sbjct: 906  EQRTGSSSAFEAAAAGPSRSAPMWGDVEHLFEGYDDQQKVAIQRERARRIEEQKKMFAAR 965

Query: 1491 KXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLAHMGMWTKLRPGI 1312
            K           LNSAKF+EVDPVHDEILRKKEEQDREKPQRHL+R  HMGMWTKLRPG+
Sbjct: 966  KLCLVLDLDHTLLNSAKFIEVDPVHDEILRKKEEQDREKPQRHLFRFHHMGMWTKLRPGV 1025

Query: 1311 WNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDDGDLVDGDERVPK 1132
            WNFLE+AS+L+ELHLYTMGNKLYATEMAK+LDP G LF+GRVIS+GDDGD  DGD   PK
Sbjct: 1026 WNFLERASQLFELHLYTMGNKLYATEMAKVLDPTGVLFAGRVISRGDDGDSDDGD--APK 1083

Query: 1131 SKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFSLPGLSLLEIDHD 952
            SKDLEGVLGMESAVVIIDDSV+VWPHNKLNLIVVERY YFPCSRRQF L G SLLEIDHD
Sbjct: 1084 SKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHD 1143

Query: 951  ERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGCRIVFSRVFPVDE 772
            ER EDGTLASSL+VIE+IHQ FFSH  LDE DVRNILASEQ++IL GCRIVFSRVFPV E
Sbjct: 1144 ERQEDGTLASSLSVIEKIHQIFFSHTSLDEADVRNILASEQRRILNGCRIVFSRVFPVGE 1203

Query: 771  VNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGRFVVHPGWLEASA 592
            VNPHL+  WQTAEQFGAVCTN IDDQVTHVVA SLGTDKVNWA+S G+FVVHPGW+EASA
Sbjct: 1204 VNPHLHPLWQTAEQFGAVCTNHIDDQVTHVVANSLGTDKVNWAISLGKFVVHPGWVEASA 1263

Query: 591  LLYRRANEQDFAIKP 547
            LLYRRANEQDFAIKP
Sbjct: 1264 LLYRRANEQDFAIKP 1278


>ref|XP_008369646.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Malus domestica]
          Length = 1278

 Score = 1207 bits (3124), Expect = 0.0
 Identities = 708/1275 (55%), Positives = 829/1275 (65%), Gaps = 19/1275 (1%)
 Frame = -3

Query: 4314 SVEEISEEDF---NKQDVVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLYNYSGYGRYN 4144
            SVEEISEEDF    KQ  V  V        +SK  S GG D RVWTMRD+YN+ G   Y 
Sbjct: 43   SVEEISEEDFVKQEKQQEVKVVVPPPPPKDQSK--SNGGDDARVWTMRDMYNHPGLRGYR 100

Query: 4143 TGLYNLAWAQAVQNKPLNEIFV---MXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDKVV 3973
            +GL +LAWAQAVQNKPLN+  +   +                      E  NAKEVD VV
Sbjct: 101  SGLVSLAWAQAVQNKPLNQKPLNQFLQMNVDPDEKLKRSSSSPSVNSPERSNAKEVDGVV 160

Query: 3972 IDDSGXXXXXXXXXXXXXXXXXXXXXXEPVQK-----AAQEPKEVALDCDPMNVGELDFD 3808
            I DSG                          +      A E  +  LDCD MN+   +  
Sbjct: 161  IVDSGDEMDAEKEEGELEEGEIDLDSEASADEKAAAGVADEAGDGVLDCDNMNLDNPETG 220

Query: 3807 SRNRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQALVQ 3628
             +N +LEKRV  IR+AL SV+  +AEKSF  VC  L N L  L GVL +   S K+ALV 
Sbjct: 221  LKNEELEKRVSLIRKALASVTRNEAEKSFVDVCLQLLNTLVSLRGVLSETNVSTKEALVH 280

Query: 3627 LSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSLGL 3448
            LSF A+QA++S FCSM   +KEQ KD +SRLLS+VKN      +P Q+KEI  + S +  
Sbjct: 281  LSFTAVQAISSVFCSMRPVQKEQNKDIISRLLSSVKNDP-PLFTPEQIKEIGVLTSFVDS 339

Query: 3447 LSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAGTL 3268
              V   T+   K  E+Q I    +   A+     S+  Y+   +               L
Sbjct: 340  PDVFLQTKAGIKDDEIQVIGFNNKNSDASAVNATSSANYSNPIM---------------L 384

Query: 3267 PDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKSGF 3088
             +  R G+  +K R V               LPSPTRE+PSCFPV  TL   D   K   
Sbjct: 385  SEVPRPGVSSLKGRRVVLPLLDTHKDHDADSLPSPTRESPSCFPVQNTLVFTDRMVKPEP 444

Query: 3087 STPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDADTN 2908
             T + AP+AE S LH Y+TDALKAVS+YQ    RS+  M++RLPSPTPSE+ + GDADT 
Sbjct: 445  DTSR-APNAEGSGLHPYDTDALKAVSTYQH-INRSSFFMSERLPSPTPSEDGDKGDADTV 502

Query: 2907 GEVSSSFTLSNLRTASTPILGQPVFSS-PTLVNSASMQGPITTKNAAPVSSVSNPTVKAS 2731
            GEVSSS + SNLRT+  PILGQ V S  P  V S+SMQ   T K+AAP SS S  T+KA 
Sbjct: 503  GEVSSSSSASNLRTSGPPILGQQVVSPFPIPVGSSSMQERFTGKSAAPASSGSKITIKAP 562

Query: 2730 AKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVNSRKQRTFDEPNMDGHLTKK 2551
             +NRDPRLRF+NSDVG L+ N + L  VHSAPK++ ++ ++SRKQ+  ++  +DG   K+
Sbjct: 563  TRNRDPRLRFSNSDVGVLNHNPQPLT-VHSAPKIDSVITLSSRKQKPLEDSKLDGPALKR 621

Query: 2550 QRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDSRTPVSVVSCPT- 2374
            QR  L  S  V D KT +GS GWLED   +GP L + N  +EN + D R  V+VVS P+ 
Sbjct: 622  QRNTLGNSGFVKDPKTASGSCGWLEDIGGVGPHLISNNQTVENTQSDPRKVVNVVSSPST 681

Query: 2373 -----NSPNVGNEQASVASTSTIASLPAILKDIAVNPTMLLNILKLGQQQRLAAEQQ-KS 2212
                 N PN  NE  S+   ST ASLPA+LK  AVNPTMLLNILKLGQQQRLAAE Q KS
Sbjct: 682  VDGNSNGPNSSNEHVSLTDLST-ASLPALLK--AVNPTMLLNILKLGQQQRLAAEAQPKS 738

Query: 2211 ADPATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIASISPQDELNKIR 2032
            A P     H             VN  S   + +  +P     V SQ A +   DE  K+ 
Sbjct: 739  AYPEKSMTHPISSNSIPGSDASVNVPSKTTAMLQTLP-----VSSQKALM---DESGKVC 790

Query: 2031 MKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQEGQADKISALSQ 1852
            MKPRDPRR+LHG+ LQKS S+G +QF+NIV P   ++ NKDN  G+KQ+GQ+D     SQ
Sbjct: 791  MKPRDPRRILHGNALQKSRSLGQEQFRNIVTPLPSSQGNKDNLTGEKQDGQSDMKLVTSQ 850

Query: 1851 SVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQRGDVRASVSNSE 1672
            SV  PDI RQFTKNLKNIAD+MSVS   T P I SQ++ +Q VP+ S+R D +A     E
Sbjct: 851  SVEAPDIARQFTKNLKNIADMMSVSNGLTSPAIASQSVPSQPVPINSERIDPKA-----E 905

Query: 1671 EQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXXXXXEQKKMFAAR 1492
            EQ++G+ SA + A AG SRS   WGDVEHLFEGYDD QK            EQKKMFAAR
Sbjct: 906  EQRTGSSSAFEAAAAGPSRSAPMWGDVEHLFEGYDDQQKVAIQRERSRRIEEQKKMFAAR 965

Query: 1491 KXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLAHMGMWTKLRPGI 1312
            K           LNSAKF+EVDPVHDEILRKKEEQDREKPQRHL+R  HMGMWTKLRPG+
Sbjct: 966  KLCLVLDLDHTLLNSAKFIEVDPVHDEILRKKEEQDREKPQRHLFRFHHMGMWTKLRPGV 1025

Query: 1311 WNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDDGDLVDGDERVPK 1132
            WNFLE+AS+L+ELHLYTMGNKLYATEMAK+LDP G LF+GRVIS+GDDGD  DGD   PK
Sbjct: 1026 WNFLERASQLFELHLYTMGNKLYATEMAKVLDPTGVLFAGRVISRGDDGDSDDGD--APK 1083

Query: 1131 SKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFSLPGLSLLEIDHD 952
            SKDLEGVLGMESAVVIIDDSV+VWPHNKLNLIVVERY YFPCSRRQF L G SLLEIDHD
Sbjct: 1084 SKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFGLLGPSLLEIDHD 1143

Query: 951  ERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGCRIVFSRVFPVDE 772
            ER EDGTLASSL+VIE+IHQ FFSH  LDE DVRNILASEQ+KIL GCRIVFSRVFPV E
Sbjct: 1144 ERQEDGTLASSLSVIEKIHQIFFSHPSLDEADVRNILASEQRKILNGCRIVFSRVFPVGE 1203

Query: 771  VNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGRFVVHPGWLEASA 592
            VNPHL+  WQTAEQFGAVCTN IDDQVTHVVA SLGTDKVNWA+S G+FVVHPGW+EASA
Sbjct: 1204 VNPHLHPLWQTAEQFGAVCTNHIDDQVTHVVANSLGTDKVNWAISLGKFVVHPGWVEASA 1263

Query: 591  LLYRRANEQDFAIKP 547
            LLYRRANEQDFAIKP
Sbjct: 1264 LLYRRANEQDFAIKP 1278


>ref|XP_011020855.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Populus euphratica]
          Length = 1271

 Score = 1199 bits (3101), Expect = 0.0
 Identities = 710/1300 (54%), Positives = 835/1300 (64%), Gaps = 43/1300 (3%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLYNYSGYGRYNTG 4138
            ASVEEISE+DFNKQ+VV      SS        +   S  +VWT+RDLY Y   G Y +G
Sbjct: 29   ASVEEISEDDFNKQEVVVVKETPSS-------ATNNNSKQKVWTVRDLYKYQVGGGYMSG 81

Query: 4137 LYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDK--VVIDD 3964
            LYNLAWAQAVQNKPLNE+FV                        SVN+ + DK  VVIDD
Sbjct: 82   LYNLAWAQAVQNKPLNELFV----------EVEVDDSSKKSSVSSVNSSKEDKSTVVIDD 131

Query: 3963 SGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDPMNVGELDFDSRNRK--- 3793
            SG                        V K     KE       +  GE+D DS  +    
Sbjct: 132  SG--------------------DEMDVVKVIDIEKEEG----ELEEGEIDLDSEGKSEGG 167

Query: 3792 -----LEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDL--LGVLLDIGHSEKQAL 3634
                  EKRV SIRE L SVS    EKSFE VC  L N LE L  L  + + G   K +L
Sbjct: 168  MVSVDTEKRVKSIREDLESVSAIKDEKSFEAVCLKLHNALESLKELVRVNENGFPSKDSL 227

Query: 3633 VQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSL 3454
            V+L F AI AVNS F SMNQ  KEQ K    R LS V +      SP   KEIE M+SSL
Sbjct: 228  VRLLFTAIGAVNSYFSSMNQKLKEQNKGVFMRFLSLVNSHDPSFFSPEHTKEIELMVSSL 287

Query: 3453 GLLSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAG 3274
                +L S+   + ++E Q    V ERD+ ++ +N      T   L S +  S  H    
Sbjct: 288  DSHDILSSSSAGE-ERETQVSGKVNERDNDSLSKNAGYDLTTMNRLPSAA-ESFVHNKPN 345

Query: 3273 TLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKS 3094
               +  + G+P  +SRGV               LPSPTRE    FPV + LP+GDG   S
Sbjct: 346  FSIEPPKPGVPSFRSRGVLLPLLDLKKFHDEDSLPSPTRETAPSFPVQRLLPIGDGMISS 405

Query: 3093 GFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDAD 2914
            G   PKVA   EE R+H YETDALKAVSSYQQKF R++   N+ LPSPTPSEE  NGD D
Sbjct: 406  GLPVPKVASITEEPRVHPYETDALKAVSSYQQKFNRNSFFTNE-LPSPTPSEESGNGDGD 464

Query: 2913 TNGEVSSSFTLSNLRTASTPILGQ-----------PVFSSPTLVNSASMQGPITTKNAAP 2767
              GEVSSS T +N RT + P+  +           P    P  +N++ ++  I T+++AP
Sbjct: 465  IAGEVSSSLT-ANYRTVNPPVSERKSASPSPPPPPPPPPPPPHLNNSCIRVVIPTRDSAP 523

Query: 2766 VSSVSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVNSRKQRTF 2587
            VSS ++ T KASAK+RDPRLR+ N+DV ALD NQRTL MV++ P+ EP   +   +++  
Sbjct: 524  VSSGTSSTAKASAKSRDPRLRYVNTDVSALDQNQRTLLMVNNPPRAEPSGAIAGSRKQKI 583

Query: 2586 DEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDS 2407
            +E  +DG   K+QR   +    V DI+++ G+GGWLED+    PQ  NKN   ENAE   
Sbjct: 584  EEDVLDGTSLKRQRNSFDNFGGVRDIRSMTGTGGWLEDTDMAEPQTVNKNQRAENAEPGQ 643

Query: 2406 R-----------TPVSVVSCPTN--------SPNVGNEQASVASTSTIASLPAILKDIAV 2284
            R           + +S V+C  N        +   G+EQA V ST+T ASLP +LKDI V
Sbjct: 644  RINNGVVRPSTGSVMSNVNCSGNVQVPVMGINTVAGSEQAPVTSTTT-ASLPDLLKDITV 702

Query: 2283 NPTMLLNILKLGQQQRLAAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMASKILQ 2107
            NPT+L+NILK+GQQQRLA + QQK ADPA    H           P VN  SS  S IL 
Sbjct: 703  NPTLLINILKMGQQQRLALDGQQKLADPAKSTSHPPSSSSVPGATPEVNAVSSQPSGILP 762

Query: 2106 IPAGTPAVPSQIASISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSI 1927
              AG   VPSQ+A+    DE  KIRMKPRDPRRVLH + LQ++GS+G +QFK     +S 
Sbjct: 763  RSAGKAQVPSQVAT---TDESGKIRMKPRDPRRVLHNNALQRAGSLGSEQFKT-TTLTST 818

Query: 1926 TRANKDNPNGQKQEGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVS 1747
            T+  KDN N QKQEG A+        V PPDI+  FTK+L+NIAD++SVSQ  T P  VS
Sbjct: 819  TQGTKDNQNLQKQEGLAE-----LNPVVPPDISSSFTKSLQNIADIVSVSQTCTTPPFVS 873

Query: 1746 QNLSTQSVPVKSQRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYD 1567
            QN+++Q V +KS R D +   SNS +Q+ G  S+P+V VA SS S +TW DVEHLFEGYD
Sbjct: 874  QNVASQPVQIKSDRVDGKTGTSNS-DQKMGPASSPEV-VAASSLSQNTWEDVEHLFEGYD 931

Query: 1566 DHQKXXXXXXXXXXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQ 1387
            D QK            EQKK+FAARK           LNSAKFVEVDPVHDEILRKKEEQ
Sbjct: 932  DQQKAAIQRERARRIEEQKKLFAARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQ 991

Query: 1386 DREKPQRHLYRLAHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNG 1207
            DREKP RHL+R  HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK+LDP G
Sbjct: 992  DREKPYRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKG 1051

Query: 1206 ALFSGRVISKGDDGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVE 1027
             LF+GRV+S+GDDGDL+DGDERVPKSKDLEGVLGMES VVIIDDS++VWPHNKLNLIVVE
Sbjct: 1052 VLFAGRVVSRGDDGDLLDGDERVPKSKDLEGVLGMESGVVIIDDSLRVWPHNKLNLIVVE 1111

Query: 1026 RYIYFPCSRRQFSLPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRN 847
            RYIYFPCSRRQF LPG SLLEIDHD+R EDGTLA SLAVIERIHQNFF+H  LDE DVRN
Sbjct: 1112 RYIYFPCSRRQFGLPGPSLLEIDHDQRPEDGTLACSLAVIERIHQNFFTHHSLDEADVRN 1171

Query: 846  ILASEQQKILAGCRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSL 667
            IL+SEQ+KILAGCR+VFSRVFPV EVNPHL+  WQTAEQFGAVCTNQID+QVTHVVA SL
Sbjct: 1172 ILSSEQRKILAGCRVVFSRVFPVGEVNPHLHPLWQTAEQFGAVCTNQIDEQVTHVVANSL 1231

Query: 666  GTDKVNWALSTGRFVVHPGWLEASALLYRRANEQDFAIKP 547
            GTDKVNWALSTGRFVVHPGW+EASALLYRRANEQ+FAIKP
Sbjct: 1232 GTDKVNWALSTGRFVVHPGWVEASALLYRRANEQEFAIKP 1271


>ref|XP_012088736.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Jatropha curcas] gi|643708360|gb|KDP23276.1|
            hypothetical protein JCGZ_23109 [Jatropha curcas]
          Length = 1283

 Score = 1194 bits (3090), Expect = 0.0
 Identities = 705/1288 (54%), Positives = 834/1288 (64%), Gaps = 31/1288 (2%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLYNYSGYGRYNTG 4138
            ASVEEISEEDFNKQ+V           KESKP    GS GR WTM+DLY Y   G Y +G
Sbjct: 45   ASVEEISEEDFNKQEVKV--------VKESKPKENDGSSGRFWTMKDLYKYQMGGGYVSG 96

Query: 4137 LYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKE----VDKVVI 3970
            LYNLAWAQAVQNKPLN++FV                      + + N +E    V+KVVI
Sbjct: 97   LYNLAWAQAVQNKPLNDLFVEVEPDENSKRSSPSSSVASVNSNSNSNKEEEKKKVEKVVI 156

Query: 3969 DDSGXXXXXXXXXXXXXXXXXXXXXXE----PVQKAAQEPKEVALDCDPMNVGELDFDSR 3802
            DDSG                      +    P +KA  E KE  L+ D M++   +  S+
Sbjct: 157  DDSGDEMDVKIVDFEKEEGELEEGEIDLDSDPAEKAIDEGKERFLNNDEMDIDVSETKSK 216

Query: 3801 NRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQALVQLS 3622
            ++ LEK+V  IREAL +++V ++ KSFE  CS+L N L+ L  V+       K  L+QLS
Sbjct: 217  DKDLEKKVKFIREALEALTVTESNKSFETACSMLGNTLKSLREVIGKNNIPTKDNLLQLS 276

Query: 3621 FVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSLGLLS 3442
              A+Q+VNS F SMN   +EQ KDS SR LS V + +   LSP  +KEIE M SSL  +S
Sbjct: 277  SNAVQSVNSVFTSMNHKLREQNKDSFSRFLSVVNSHVPSLLSPELIKEIEVMTSSLSSIS 336

Query: 3441 VLPSTRVSDKQKE--LQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAGTL 3268
                    +K+KE  +   +G ++ D +      S  T  K +  + S AS     +   
Sbjct: 337  -------GEKEKESLIFSDEGNKKDDMSAKSSGHSLTTAKKLSSFAGSFASNKPNMSLEA 389

Query: 3267 PDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKSGF 3088
            P   + G+   KSR                 LPSPTREA    PV +             
Sbjct: 390  P---KMGVSTFKSRAGLLPLLDLHKDHDADSLPSPTREAAPPLPVRRV------------ 434

Query: 3087 STPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDADTN 2908
            STPKVA D E++++H YETDALKAVSSYQQKF RS+ ++NDRLPSPTPSEE  NGD D  
Sbjct: 435  STPKVALDNEDTKMHPYETDALKAVSSYQQKFNRSSFAVNDRLPSPTPSEESGNGDGDVG 494

Query: 2907 GEVSSSFTLSNLRTASTPILGQPVFSSPTLVNSASMQGPITTKNAAPVSSVSNPTVKASA 2728
            GEVSSS  +   R A+ P  GQ + S+     S++MQG +  KNA PVSS S+ TVKASA
Sbjct: 495  GEVSSSSAVGQFRPANPPNSGQSIVSTSPHPESSNMQGVVPAKNAGPVSSGSSLTVKASA 554

Query: 2727 KNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIV-PVNSRKQRTFDEPNMDGHLTKK 2551
            K+RDPRLRF NSD  ALD N   LP+V++ PKVE +  P+N +KQ++ D+  +DG   K+
Sbjct: 555  KSRDPRLRFVNSDANALDQNH-VLPLVNNTPKVEYLGGPMNLKKQKSVDDSVLDGPSLKR 613

Query: 2550 QRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDSRTPVSVVSCPTN 2371
            QR  LE S  V ++KT+  SGGWLED+  + PQ  N+N  +EN+  D R   + V+CP+ 
Sbjct: 614  QRNVLEHSGGVGNVKTMIASGGWLEDTDMVRPQTMNRNQLVENS--DPRRMDNGVACPST 671

Query: 2370 SPNV------GNEQASVASTSTI-------------ASLPAILKDIAVNPTMLLNILKLG 2248
               +      GNEQ  V  T  I             ASLP +LK+IAVNPTMLLN+LK+G
Sbjct: 672  VSGISSVSISGNEQKPVIGTGAITEGEQIQMTGTSEASLPDLLKNIAVNPTMLLNLLKMG 731

Query: 2247 QQQRLAAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQI 2071
            QQQR A + QQK +DPA  + H           P+VN      S ++  PAGT  VP Q 
Sbjct: 732  QQQRSAIDAQQKPSDPAKTSKHPLNANAILGSVPVVNVVPPQPS-VMPRPAGTLQVPPQA 790

Query: 2070 ASISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQK 1891
            A     +EL KIRMKPRDPRRVLH  TLQK+G+MG++QFK  +      +  KDN   QK
Sbjct: 791  AV----EELGKIRMKPRDPRRVLHYQTLQKNGNMGYEQFKTNLTSPPTDQGTKDNQIVQK 846

Query: 1890 QEGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKS 1711
            Q+GQA+      QS+  PDI+  FTK+LKNIAD++SVS AST PT+VSQNL++Q      
Sbjct: 847  QDGQAETEPVPLQSLVVPDISLPFTKSLKNIADIVSVSHASTSPTVVSQNLASQPT---- 902

Query: 1710 QRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXX 1531
                 R  VSNSE Q +G  SAP VA  G  R    WGDVEHLFEGY D QK        
Sbjct: 903  -----RTIVSNSE-QPAGIGSAPCVAPVGP-RPQDAWGDVEHLFEGYSDQQKAAIQRERA 955

Query: 1530 XXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRL 1351
                EQKKMFAARK           LNSAKFVEVDPVHDEILRKKEEQDREKP RHL+R 
Sbjct: 956  RRIEEQKKMFAARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKPYRHLFRF 1015

Query: 1350 AHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGD 1171
             HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK+LDP G LF+GRVIS+GD
Sbjct: 1016 PHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPTGVLFNGRVISRGD 1075

Query: 1170 DGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQF 991
            D D  D DERVPKSKDLEGVLGMESAVVIIDDSV+VWPHNKLNLIVVERYIYFPCSRRQF
Sbjct: 1076 DTDSFDSDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYIYFPCSRRQF 1135

Query: 990  SLPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAG 811
             LPG SLLEIDHDER EDGTLA SLAVIE+IHQ+FF+H  LD+ DVRNILASEQ+KILAG
Sbjct: 1136 GLPGPSLLEIDHDERPEDGTLACSLAVIEKIHQHFFTHPSLDDADVRNILASEQRKILAG 1195

Query: 810  CRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTG 631
            CRIVFSRVFPV E NPHL+  WQTAEQFGAVCTNQID+QVTHVVA SLGTDKVNWALSTG
Sbjct: 1196 CRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTNQIDEQVTHVVANSLGTDKVNWALSTG 1255

Query: 630  RFVVHPGWLEASALLYRRANEQDFAIKP 547
            RFVV+PGW+EASALLYRRANEQDFAIKP
Sbjct: 1256 RFVVYPGWVEASALLYRRANEQDFAIKP 1283


>ref|XP_012459417.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X1 [Gossypium raimondii]
            gi|763810289|gb|KJB77191.1| hypothetical protein
            B456_012G125200 [Gossypium raimondii]
          Length = 1272

 Score = 1178 bits (3047), Expect = 0.0
 Identities = 697/1291 (53%), Positives = 841/1291 (65%), Gaps = 34/1291 (2%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGG---SDGRVWTMRDLYNYSGYGR- 4150
            AS+EEISEEDFNKQ+V  K+ K+S         SKGG   S+ RVWTM+DL  Y    R 
Sbjct: 20   ASIEEISEEDFNKQEV--KILKESKS-------SKGGEANSNSRVWTMQDLCKYPSVIRG 70

Query: 4149 YNTGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRD-ESVNAKE----- 3988
            Y +GLYN AWAQAVQNKPLN+IFV                         SVN+KE     
Sbjct: 71   YASGLYNFAWAQAVQNKPLNDIFVKELEQQPQQDENNNSKRSSPSSSVASVNSKEEKGYS 130

Query: 3987 ---VDKVVIDDSGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDPMNVGEL 3817
                D+VVIDD                           ++   E  E+ LD +P+    L
Sbjct: 131  GNSADRVVIDDDTGDEMEEDKIVNLDK-----------EEGELEEGEIDLDSEPVKERVL 179

Query: 3816 DFDSRN----RKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHS 3649
              +  N     +LEKRV+ IR  L  ++V +AEKSFE VCS LQN LE L G++ + G  
Sbjct: 180  SSEDGNVGISDELEKRVNLIRGVLEGITVIEAEKSFEVVCSRLQNALESLQGLVFEYGVP 239

Query: 3648 EKQALVQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEF 3469
             K  L++L   A+ AVNSAF ++N N KEQ    LSRLLS VK          +MKEIE 
Sbjct: 240  TKDTLIEL---ALGAVNSAFVALNSNLKEQNVSILSRLLSVVKGFDPPLFPLDKMKEIEV 296

Query: 3468 MISSLGLLSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMD 3289
            M     LLS+    R  D +KE++ ++   ++D   + EN  +       L  +S+ S  
Sbjct: 297  M-----LLSLNSPARAIDSEKEIKIVN---KKDPDALAENVGHDLTVTNKL-PLSVDSEI 347

Query: 3288 HGHAGTLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGD 3109
            H     L +AL+ G+P  +++G+               LPSPTRE   C PV + L  GD
Sbjct: 348  HNMPNILTEALKPGVPNFRNKGLSLPLLDLHKDHDADSLPSPTRETTPCLPVLRPLTTGD 407

Query: 3108 GSFKSGFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYE 2929
            G  +SGF   K  PDAE +++H YETDALKA SSYQ+KFGR +   +DRLPSPTPSEE  
Sbjct: 408  GMVRSGFMMAKGLPDAERNKMHPYETDALKAFSSYQRKFGRGSFFSSDRLPSPTPSEESG 467

Query: 2928 NGDADTNGEVSSSFTLSNLRTASTPILGQPVFSSPTLVNSAS----MQGPITTKNAAPV- 2764
            +   DT GEVSSS ++ N +  + P++G P+ SS   ++SAS    MQG  TT+NA PV 
Sbjct: 468  DEGCDTGGEVSSSSSIGNFKP-NLPVMGHPIVSSAPHIDSASSTSSMQGQFTTQNATPVT 526

Query: 2763 -SSVSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPV-NSRKQRT 2590
             SS SN   KASAK+RDPRLRFANS+V ALDLNQR L   H+A KV P+  + + RK+++
Sbjct: 527  VSSASNILSKASAKSRDPRLRFANSNVSALDLNQRPL---HNASKVPPVSGIMDPRKKKS 583

Query: 2589 FDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVD 2410
             +EP +DG   K+Q+  LE    V D++ V+G+GGWLED+ N   Q++N+N  ME  + +
Sbjct: 584  TEEPVLDGPAPKRQKNELENFG-VRDVQAVSGNGGWLEDTDNCESQITNRNQTMETLDSN 642

Query: 2409 SR------TPVSVVSCPTNSPNVGNEQASVASTSTIASLPAILKDIAVNPTMLLNILKLG 2248
            SR      T  S +S  TN+    NEQ  +   S   SLPA+LKDIAVNPTML+NILK+G
Sbjct: 643  SRKMEHGVTCSSTLSGKTNTTVNKNEQVPLTGMSN-PSLPALLKDIAVNPTMLINILKMG 701

Query: 2247 QQQRLAAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMASKIL-QIPAGTPAVPSQ 2074
            QQQRL +E QQK+ DP    ++           P  N   S +  ++    +GT + P+ 
Sbjct: 702  QQQRLPSESQQKTPDPLKNTLYQPSSNPVLGVIPPANVIPSPSVNVVPSSSSGTLSKPAG 761

Query: 2073 IASISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFK-NIVPPSSITRANKDNPNG 1897
                 P DE  KIRMKPRDPRRVLHG+ LQKSGS+G DQ K N   P+S T+ +KDN N 
Sbjct: 762  NLQGPPLDESCKIRMKPRDPRRVLHGNVLQKSGSVGPDQLKTNGTSPASSTQGSKDNMNA 821

Query: 1896 QKQ-EGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVP 1720
            QKQ E Q +      Q V PPDI +QFT++LKNIA +MS  Q+      VSQNL +Q + 
Sbjct: 822  QKQLENQIEAKPIQCQFVPPPDIAQQFTQSLKNIAGMMSGPQSFAGLPAVSQNLVSQPIQ 881

Query: 1719 VKSQRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXX 1540
            VKS+  D     SNSE+QQ+GT +AP+  V     S + WGDVEHLFE YDD QK     
Sbjct: 882  VKSETADKNTKGSNSEDQQTGTGTAPEAGVTCPPPSQNAWGDVEHLFEKYDDRQKAAIQR 941

Query: 1539 XXXXXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHL 1360
                   EQKKMFAARK           LNSAKF+EVDPVH+EILRKKEEQDREKPQRHL
Sbjct: 942  ERARRIEEQKKMFAARKLCLVLDLDHTLLNSAKFIEVDPVHEEILRKKEEQDREKPQRHL 1001

Query: 1359 YRLAHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVIS 1180
            +R  HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK+LDP G LF+GRVIS
Sbjct: 1002 FRFHHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1061

Query: 1179 KGDDGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSR 1000
            +GDDGD  DGDERVP+SKDLEGVLGMES+VVIIDDSV+VWPHNKLNLIVVERY YFPCSR
Sbjct: 1062 RGDDGDPFDGDERVPRSKDLEGVLGMESSVVIIDDSVRVWPHNKLNLIVVERYTYFPCSR 1121

Query: 999  RQFSLPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKI 820
            RQF L G SLLEIDHDER EDGTLASSLAVIERIHQNFFSHQ LD++DVRNILA+EQ+KI
Sbjct: 1122 RQFGLLGPSLLEIDHDERPEDGTLASSLAVIERIHQNFFSHQNLDDLDVRNILATEQRKI 1181

Query: 819  LAGCRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWAL 640
            L+GCRIVFSRVFPV E NPHL+  WQTAEQFGAVCTNQID+ VTHVVA SLGTDKVNWAL
Sbjct: 1182 LSGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTNQIDEHVTHVVANSLGTDKVNWAL 1241

Query: 639  STGRFVVHPGWLEASALLYRRANEQDFAIKP 547
            STG+FVVHPGW+EASALLYRRANE DFAIKP
Sbjct: 1242 STGKFVVHPGWVEASALLYRRANEHDFAIKP 1272


>ref|XP_010656786.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X2 [Vitis vinifera]
          Length = 1276

 Score = 1177 bits (3044), Expect = 0.0
 Identities = 696/1306 (53%), Positives = 836/1306 (64%), Gaps = 49/1306 (3%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLYNYSGYGR---- 4150
            ASVEEISEEDFNKQ+V           +E+KP     +D RVWTMRDL +   Y +    
Sbjct: 38   ASVEEISEEDFNKQEVRV--------LREAKP----KADTRVWTMRDLQDLYKYHQACSG 85

Query: 4149 YNTGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDKVVI 3970
            Y   LYNLAWAQAVQNKPLN+IFVM                    RD+S +AKEV KV+I
Sbjct: 86   YTPRLYNLAWAQAVQNKPLNDIFVMDDEESKRSSSSSNT-----SRDDSSSAKEVAKVII 140

Query: 3969 DDSGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDP--------MNVGELD 3814
            DDSG                         ++   E  E+ LD +P        ++V E +
Sbjct: 141  DDSGDEMDVKMDDVSEK------------EEGELEEGEIDLDSEPDVKDEGGVLDVNEPE 188

Query: 3813 FDSRNRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLD--IGHSE-- 3646
             D + R+L +RV SI+E L SV+V +AEKSF  VCS LQN L  L  V  +  +G S   
Sbjct: 189  IDLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVP 248

Query: 3645 -KQALVQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEF 3469
             K AL Q    AI+A+N  FCSMN N+KE  KD  SRLLS V+       S   +KE+E 
Sbjct: 249  TKDALAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEV 308

Query: 3468 MISSLGLLSVLPSTRVSDKQKELQDIDGVRER--DSANIGENESNRTYTKFALGSVSMAS 3295
            M+S L   +   S   SDK  ++Q  DG+     DS+      +  +  K +L S+S+ S
Sbjct: 309  MMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAKKLSLDSISVES 368

Query: 3294 MDHGHAGTLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPV 3115
             +  +    PDAL+ G+   + R +               LPSPT +AP CFPV K    
Sbjct: 369  YNQNN----PDALKPGLSSSRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNK---- 420

Query: 3114 GDGSFKSGFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEE 2935
                  S   T KVA + ++S +H YETDALKAVS+YQQKFG ++    D+LPSPTPSEE
Sbjct: 421  ------SELVTAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEE 474

Query: 2934 YENGDADTNGEVSSSFTLSNLRTASTPILGQPVFSSPTLVNSASMQGP------------ 2791
              +   D +GEVSSS T+S   TA+ P LG P+ SS   ++S+ +QGP            
Sbjct: 475  SGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQMDSSIVQGPTVGRNTSLVSSG 534

Query: 2790 -----------ITTKNAAPVSSVSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVH 2644
                       +  +N   V+S  N  ++ASAK+RDPRLR A+SD G+LDLN+R LP V 
Sbjct: 535  PHLDSSVVQGLVVPRNTGAVNSRFNSILRASAKSRDPRLRLASSDAGSLDLNERPLPAVS 594

Query: 2643 SAPKVEPIVP-VNSRKQRTFDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSV 2467
            ++PKV+P+   V+SRKQ++ +EP +DG +TK+QR GL     V D +TV  SGGWLEDS 
Sbjct: 595  NSPKVDPLGEIVSSRKQKSAEEPLLDGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSN 654

Query: 2466 NLGPQLSNKNTFMENAEVDSR---TPVSVVSCPTNSPNV---GNEQASVASTSTIASLPA 2305
             + PQ+ N+N  +EN   D +   + V+V     + P V   GNE   V +TST ASL +
Sbjct: 655  TVIPQMMNRNQLIENTGTDPKKLESKVTVTGIGCDKPYVTVNGNEHLPVVATSTTASLQS 714

Query: 2304 ILKDIAVNPTMLLNILKLGQQQRLAAEQQKSADPATIAIHXXXXXXXXXXXPLVNNASSM 2125
            +LKDIAVNP + +NI           EQQKS DPA   +            P  + A   
Sbjct: 715  LLKDIAVNPAVWMNIFN-------KVEQQKSGDPAKNTVLPPTSNSILGVVPPASVAPLK 767

Query: 2124 ASKILQIPAGTPAVPSQIASISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNI 1945
             S + Q PAG   VP Q   ++PQDE  K+RMKPRDPRR+LH ++ Q+SGS G +QFK  
Sbjct: 768  PSALGQKPAGALQVP-QTGPMNPQDESGKVRMKPRDPRRILHANSFQRSGSSGSEQFKT- 825

Query: 1944 VPPSSITRANKDNPNGQKQEGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQAST 1765
                          N QKQE Q +  S  S SV PPDI++QFTKNLKNIADLMS SQAS+
Sbjct: 826  --------------NAQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNIADLMSASQASS 871

Query: 1764 KPTIVSQNLSTQSVPVKSQRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEH 1585
                  Q LS+QSV V + R DV+A+VS+S +Q +   S P+ A AG  +S +TWGDVEH
Sbjct: 872  MTPTFPQILSSQSVQVNTDRMDVKATVSDSGDQLTANGSKPESA-AGPPQSKNTWGDVEH 930

Query: 1584 LFEGYDDHQKXXXXXXXXXXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEIL 1405
            LF+GYDD QK            EQKKMF+ARK           LNSAKFVEVDPVHDEIL
Sbjct: 931  LFDGYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFVEVDPVHDEIL 990

Query: 1404 RKKEEQDREKPQRHLYRLAHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK 1225
            RKKEEQDREK QRHL+R  HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK
Sbjct: 991  RKKEEQDREKSQRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK 1050

Query: 1224 LLDPNGALFSGRVISKGDDGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKL 1045
            +LDP G LF+GRVISKGDDGD++DGDERVPKSKDLEGVLGMESAVVIIDDSV+VWPHNKL
Sbjct: 1051 VLDPKGVLFAGRVISKGDDGDVLDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKL 1110

Query: 1044 NLIVVERYIYFPCSRRQFSLPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLD 865
            NLIVVERY YFPCSRRQF LPG SLLEIDHDER EDGTLASSLAVIERIHQ+FFS++ LD
Sbjct: 1111 NLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHQSFFSNRALD 1170

Query: 864  EVDVRNILASEQQKILAGCRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTH 685
            EVDVRNILASEQ+KILAGCRIVFSRVFPV E NPHL+  WQTAE FGAVCTNQID+QVTH
Sbjct: 1171 EVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAESFGAVCTNQIDEQVTH 1230

Query: 684  VVALSLGTDKVNWALSTGRFVVHPGWLEASALLYRRANEQDFAIKP 547
            VVA SLGTDKVNWALSTGRFVVHPGW+EASALLYRRANEQDFAIKP
Sbjct: 1231 VVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP 1276


>ref|XP_002304648.2| hypothetical protein POPTR_0003s16280g [Populus trichocarpa]
            gi|550343308|gb|EEE79627.2| hypothetical protein
            POPTR_0003s16280g [Populus trichocarpa]
          Length = 1247

 Score = 1176 bits (3043), Expect = 0.0
 Identities = 704/1304 (53%), Positives = 824/1304 (63%), Gaps = 47/1304 (3%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLYNYSGYGRYNTG 4138
            ASVEEISE+DFNKQ+VV      SS    +       S  +VWT+RDLY Y   G Y +G
Sbjct: 29   ASVEEISEDDFNKQEVVVVKETPSSTTNNNS-----SSKQKVWTVRDLYKYQVGGGYMSG 83

Query: 4137 LYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDK--VVIDD 3964
            LYNLAWAQAVQNKPLNE+FV                        SVN+ + DK  VVIDD
Sbjct: 84   LYNLAWAQAVQNKPLNELFVEVEVDDSSQKSSV----------SSVNSSKEDKRTVVIDD 133

Query: 3963 SGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDPMNVGELDFDSRNRK--- 3793
            SG                        V K     KE       +  GE+D DS  +    
Sbjct: 134  SGDEMD--------------------VVKVIDIEKEEG----ELEEGEIDLDSEGKSEGG 169

Query: 3792 -----LEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLL--DIGHSEKQAL 3634
                  EKRV SIRE L SVSV   +KSFE VC  L N LE L  ++   + G   K +L
Sbjct: 170  MVSVDTEKRVKSIREDLESVSVIKDDKSFEAVCLKLHNALESLKELVRVNENGFPSKDSL 229

Query: 3633 VQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEI-EFMISS 3457
            V+L F AI AVNS F SMNQ  KEQ K    R LS V +      SP   KE+ +F    
Sbjct: 230  VRLLFTAIGAVNSFFSSMNQKLKEQNKGVFMRFLSLVNSHDPSFFSPEHTKEVCDFCNFD 289

Query: 3456 LGLLSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHA 3277
              ++S+              D+  +    SA                      S  H   
Sbjct: 290  FRIVSLC------------YDLTTMNRLPSA--------------------AESFVHNKP 317

Query: 3276 GTLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFK 3097
                +  + G+P  KSRGV               LPSPTRE    FPV + LP+GDG   
Sbjct: 318  NFSIEPPKPGVPSFKSRGVLLPLLDLKKFHDEDSLPSPTRETAPSFPVQRLLPIGDGMIS 377

Query: 3096 SGFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDA 2917
            SG   PKVA   EE R+H YETDALKAVSSYQ+KF  ++   N+ LPSPTPSEE  NGD 
Sbjct: 378  SGLPVPKVASITEEPRVHPYETDALKAVSSYQKKFNLNSFFTNE-LPSPTPSEESGNGDG 436

Query: 2916 DTNGEVSSSFTLSNLRTASTPILGQ--------------PVFSSPTLVNSASMQGPITTK 2779
            DT GEVSSS T+ N RT + P+  +              P    P  +N++S++  I T+
Sbjct: 437  DTAGEVSSSSTV-NYRTVNPPVSDRKSASPSPSPPPPPPPPPPPPPHLNNSSIRVVIPTR 495

Query: 2778 NAAPVSSVSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVNSRK 2599
            N+APVSS ++ TVKASAK+RDPRLR+ N+D  ALD NQRTL MV++ P+ EP   +   +
Sbjct: 496  NSAPVSSGTSSTVKASAKSRDPRLRYVNTDASALDQNQRTLLMVNNPPRAEPSGAIAGSR 555

Query: 2598 QRTFDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENA 2419
            ++  +E  +DG   K+QR   +   +V DI+++ G+GGWLED+    PQ  NKN + ENA
Sbjct: 556  KQKIEEDVLDGTSLKRQRNSFDNFGVVRDIRSMTGTGGWLEDTDMAEPQTVNKNQWAENA 615

Query: 2418 EVDSR-----------TPVSVVSCPTN--------SPNVGNEQASVASTSTIASLPAILK 2296
            E   R           + +S VSC  N        +   G+EQA V ST+T ASLP +LK
Sbjct: 616  EPGQRINNGVVCPSTGSVMSSVSCSGNVQVPVMGINTIAGSEQAPVTSTTT-ASLPDLLK 674

Query: 2295 DIAVNPTMLLNILKLGQQQRLAAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMAS 2119
            DI VNPTML+NILK+GQQQRLA + QQK ADPA    H           P VN  SS+ S
Sbjct: 675  DITVNPTMLINILKMGQQQRLALDGQQKLADPAKSTSHPPSSNTVLGAIPEVNAVSSLPS 734

Query: 2118 KILQIPAGTPAVPSQIASISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVP 1939
             IL   AG    PSQIA+    DE  KIRMKPRDPRRVLH + LQ++GS+G +QFK    
Sbjct: 735  GILPRSAGKAQGPSQIATT---DESGKIRMKPRDPRRVLHNNALQRAGSLGSEQFKTTTL 791

Query: 1938 PSSITRANKDNPNGQKQEGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKP 1759
             S+ T+  KDN N QKQEG A+      + V PPDI+  FTK+LKNIAD++SVSQ  T P
Sbjct: 792  TST-TQGTKDNQNLQKQEGLAEL-----KPVVPPDISSPFTKSLKNIADIVSVSQTCTTP 845

Query: 1758 TIVSQNLSTQSVPVKSQRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLF 1579
              VSQN+++Q V +KS R D +  +SNS+ Q+ G  S+P+V VA SS S +TW DVEHLF
Sbjct: 846  PFVSQNVASQPVQIKSDRVDGKTGISNSD-QKMGPASSPEV-VAASSLSQNTWEDVEHLF 903

Query: 1578 EGYDDHQKXXXXXXXXXXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRK 1399
            EGYDD QK            EQKK+FAARK           LNSAKFVEVDPVHDEILRK
Sbjct: 904  EGYDDQQKAAIQRERARRIEEQKKLFAARKLCLVLDLDHTLLNSAKFVEVDPVHDEILRK 963

Query: 1398 KEEQDREKPQRHLYRLAHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLL 1219
            KEEQDREKP RHL+R  HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK+L
Sbjct: 964  KEEQDREKPYRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVL 1023

Query: 1218 DPNGALFSGRVISKGDDGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNL 1039
            DP G LF+GRV+S+GDDGDL+DGDERVPKSKDLEGVLGMES VVIIDDS++VWPHNKLNL
Sbjct: 1024 DPKGVLFAGRVVSRGDDGDLLDGDERVPKSKDLEGVLGMESGVVIIDDSLRVWPHNKLNL 1083

Query: 1038 IVVERYIYFPCSRRQFSLPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEV 859
            IVVERYIYFPCSRRQF LPG SLLEIDHDER EDGTLA SLAVIERIHQNFF+H  LDE 
Sbjct: 1084 IVVERYIYFPCSRRQFGLPGPSLLEIDHDERPEDGTLACSLAVIERIHQNFFTHHSLDEA 1143

Query: 858  DVRNILASEQQKILAGCRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVV 679
            DVRNILASEQ+KILAGCRIVFSRVFPV EVNPHL+  WQ+AEQFGAVCTNQID+QVTHVV
Sbjct: 1144 DVRNILASEQRKILAGCRIVFSRVFPVGEVNPHLHPLWQSAEQFGAVCTNQIDEQVTHVV 1203

Query: 678  ALSLGTDKVNWALSTGRFVVHPGWLEASALLYRRANEQDFAIKP 547
            A SLGTDKVNWALSTGRFVVHPGW+EASALLYRRANEQDFAIKP
Sbjct: 1204 ANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP 1247


>gb|KDO83165.1| hypothetical protein CISIN_1g000897mg [Citrus sinensis]
          Length = 1234

 Score = 1176 bits (3041), Expect = 0.0
 Identities = 701/1287 (54%), Positives = 840/1287 (65%), Gaps = 30/1287 (2%)
 Frame = -3

Query: 4317 ASVEEISEEDFN-KQDVVTKVSKDSSDYKESKPISKGGSDG--RVWTMRDLYN-YSGYGR 4150
            ASVEEISEEDF  KQ+ V KV       KE+KPI  GG +   RVWTMRDLYN Y    R
Sbjct: 14   ASVEEISEEDFKIKQEEVVKV------VKETKPIKVGGGEAAARVWTMRDLYNKYPAICR 67

Query: 4149 -YNTGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXS-------GRDESVNA 3994
             Y  GL+NLAWAQAVQNKPLNEIFVM                  S       G+D+    
Sbjct: 68   GYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVASVNSGAAAGKDDK--- 124

Query: 3993 KEVDKVVIDDSGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDPMNVGELD 3814
            K V+KVVIDDSG                         ++   E  E+ LD +  +  ++ 
Sbjct: 125  KVVEKVVIDDSGDEIEK--------------------EEGELEEGEIELDLESESNEKVS 164

Query: 3813 FDSRNRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQAL 3634
               +       V SIREAL SV   D   SFE VCS L+  LE L  ++ +     K AL
Sbjct: 165  EQVKEEMKLINVESIREALESVLRGDI--SFEGVCSKLEFTLESLRELVNENNVPTKDAL 222

Query: 3633 VQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSL 3454
            +QL+F A+Q+V+S FCSMN   KEQ K+ LSRLLS +K+      S  Q+KE+E M+SSL
Sbjct: 223  IQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSL 282

Query: 3453 GLLSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAG 3274
                    TR +DK+K++  + GV  +DS  + EN  N    K  +     + M +    
Sbjct: 283  -------VTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPL- 334

Query: 3273 TLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKS 3094
               +A + G PG +SRGV               LPSPTRE     PV + L VGDG  KS
Sbjct: 335  ---EASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKS 391

Query: 3093 GFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDAD 2914
              +  K++ +AE  +  HYETDAL+A SSYQQKFGR++  MN  LPSPTPSEE  +GD D
Sbjct: 392  WAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGD 451

Query: 2913 TNGEVSSSFTLSNLRTASTPILGQ-PVFSSPTLVNS----ASMQGPITTKNAAPVSS--- 2758
            T GE+SS+  +   +  + P LGQ PV S P  ++     +S+Q   T  N+AP SS   
Sbjct: 452  TGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYN 511

Query: 2757 ---VSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPV-NSRKQRT 2590
                 NP VKA  K+RDPRLRFA+S+  AL+LN +  P++H+APKVEP+  V +SRKQ+T
Sbjct: 512  PVVKPNPVVKAPIKSRDPRLRFASSN--ALNLNHQPAPILHNAPKVEPVGRVMSSRKQKT 569

Query: 2589 FDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVD 2410
             +EP +DG   K+QR G E S +V D K + GSGGWLED+    PQ+ N+N  +++AE +
Sbjct: 570  VEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESN 629

Query: 2409 SRTPVSVVSCPTNS--PNV---GNEQASVASTSTIASLPAILKDIAVNPTMLLNILKLGQ 2245
            SR   +  + P  S  PNV   GNE A   + ST  SLPA+LKDIAVNPTMLLNILK+GQ
Sbjct: 630  SRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQ 689

Query: 2244 QQRLAAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIA 2068
            QQ+LAA+ QQKS D +   +H                   + S I  +   T ++PS I 
Sbjct: 690  QQKLAADAQQKSNDSSMNTMHPP-----------------IPSSIPPVSV-TCSIPSGIL 731

Query: 2067 SISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQ 1888
            S  P DEL K+RMKPRDPRRVLHG+ LQ+SGS+G  +FK   P +  T+ +K+N N QKQ
Sbjct: 732  S-KPMDELGKVRMKPRDPRRVLHGNALQRSGSLG-PEFKTDGPSAPCTQGSKENLNFQKQ 789

Query: 1887 EGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQ 1708
             G  +    LSQSV  PDIT+QFTKNLK+IAD MSVSQ  T   +VSQN   Q   +KS 
Sbjct: 790  LGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSG 849

Query: 1707 RGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXX 1528
              D++A V+N +++Q+GT S P+    G+    S WGDVEHLFEGYDD QK         
Sbjct: 850  -ADMKAVVTNHDDKQTGTGSGPEAGPVGA-HPQSAWGDVEHLFEGYDDQQKAAIQKERTR 907

Query: 1527 XXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLA 1348
               EQKKMF+ARK           LNSAKF EVDPVHDEILRKKEEQDREKP RHL+R  
Sbjct: 908  RLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFP 967

Query: 1347 HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDD 1168
            HMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYATEMAK+LDP G LF+GRVIS+GDD
Sbjct: 968  HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDD 1027

Query: 1167 GDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFS 988
            GD  DGDERVPKSKDLEGVLGMESAVVIIDDSV+VWPHNKLNLIVVERY YFPCSRRQF 
Sbjct: 1028 GDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFG 1087

Query: 987  LPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGC 808
            L G SLLEIDHDER+EDGTLASSL VIER+H+ FFSHQ LD+VDVRNILA+EQ+KILAGC
Sbjct: 1088 LLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGC 1147

Query: 807  RIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGR 628
            RIVFSRVFPV E NPHL+  WQTAEQFGAVCT  IDDQVTHVVA SLGTDKVNWALSTGR
Sbjct: 1148 RIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGR 1207

Query: 627  FVVHPGWLEASALLYRRANEQDFAIKP 547
            FVVHPGW+EASALLYRRANEQDFAIKP
Sbjct: 1208 FVVHPGWVEASALLYRRANEQDFAIKP 1234


>ref|XP_006438860.1| hypothetical protein CICLE_v10030535mg [Citrus clementina]
            gi|568858958|ref|XP_006483010.1| PREDICTED: RNA
            polymerase II C-terminal domain phosphatase-like 3-like
            [Citrus sinensis] gi|557541056|gb|ESR52100.1|
            hypothetical protein CICLE_v10030535mg [Citrus
            clementina]
          Length = 1234

 Score = 1176 bits (3041), Expect = 0.0
 Identities = 701/1287 (54%), Positives = 840/1287 (65%), Gaps = 30/1287 (2%)
 Frame = -3

Query: 4317 ASVEEISEEDFN-KQDVVTKVSKDSSDYKESKPISKGGSDG--RVWTMRDLYN-YSGYGR 4150
            ASVEEISEEDF  KQ+ V KV       KE+KPI  GG +   RVWTMRDLYN Y    R
Sbjct: 14   ASVEEISEEDFKIKQEEVVKV------VKETKPIKVGGGEAAARVWTMRDLYNKYPAICR 67

Query: 4149 -YNTGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXS-------GRDESVNA 3994
             Y  GL+NLAWAQAVQNKPLNEIFVM                  S       G+D+    
Sbjct: 68   GYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVASVNSGAAAGKDDK--- 124

Query: 3993 KEVDKVVIDDSGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDPMNVGELD 3814
            K V+KVVIDDSG                         ++   E  E+ LD +  +  ++ 
Sbjct: 125  KVVEKVVIDDSGDEIEK--------------------EEGELEEGEIELDLESESNEKVS 164

Query: 3813 FDSRNRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQAL 3634
               +       V SIREAL SV   D   SFE VCS L+  LE L  ++ +     K AL
Sbjct: 165  EQVKEEMKLINVESIREALESVLRGDI--SFEGVCSKLEFTLESLRELVNENNVPTKDAL 222

Query: 3633 VQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSL 3454
            +QL+F A+Q+V+S FCSMN   KEQ K+ LSRLLS +K+      S  Q+KE+E M+SSL
Sbjct: 223  IQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSVIKSHEPPLFSSNQIKEMEAMLSSL 282

Query: 3453 GLLSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAG 3274
                    TR +DK+K++  + GV  +DS  + EN  N    K  +     + M +    
Sbjct: 283  -------VTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPL- 334

Query: 3273 TLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKS 3094
               +A + G PG +SRGV               LPSPTRE     PV + L VGDG  KS
Sbjct: 335  ---EASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGVVKS 391

Query: 3093 GFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDAD 2914
              +  K++ +AE  +  HYETDAL+A SSYQQKFGR++  MN  LPSPTPSEE  +GD D
Sbjct: 392  WAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGD 451

Query: 2913 TNGEVSSSFTLSNLRTASTPILGQ-PVFSSPTLVNS----ASMQGPITTKNAAPVSS--- 2758
            T GE+SS+  +   +  + P LGQ PV S P  ++     +S+Q   T  N+AP SS   
Sbjct: 452  TGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYN 511

Query: 2757 ---VSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPV-NSRKQRT 2590
                 NP VKA  K+RDPRLRFA+S+  AL+LN +  P++H+APKVEP+  V +SRKQ+T
Sbjct: 512  PVVKPNPVVKAPIKSRDPRLRFASSN--ALNLNHQPAPILHNAPKVEPVGRVMSSRKQKT 569

Query: 2589 FDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVD 2410
             +EP +DG   K+QR G E S +V D K + GSGGWLED+    PQ+ N+N  +++AE +
Sbjct: 570  VEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESN 629

Query: 2409 SRTPVSVVSCPTNS--PNV---GNEQASVASTSTIASLPAILKDIAVNPTMLLNILKLGQ 2245
            SR   +  + P  S  PNV   GNE A   + ST  SLPA+LKDIAVNPTMLLNILK+GQ
Sbjct: 630  SRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQ 689

Query: 2244 QQRLAAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIA 2068
            QQ+LAA+ QQKS D +   +H                   + S I  +   T ++PS I 
Sbjct: 690  QQKLAADAQQKSNDSSMNTMHPP-----------------IPSSIPPVSV-TCSIPSGIL 731

Query: 2067 SISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQ 1888
            S  P DEL K+RMKPRDPRRVLHG+ LQ+SGS+G  +FK   P +  T+ +K+N N QKQ
Sbjct: 732  S-KPMDELGKVRMKPRDPRRVLHGNALQRSGSLG-PEFKTDGPSAPCTQGSKENLNFQKQ 789

Query: 1887 EGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQ 1708
             G  +    LSQSV  PDIT+QFTKNLK+IAD MSVSQ  T   +VSQN   Q   +KS 
Sbjct: 790  LGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSG 849

Query: 1707 RGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXX 1528
              D++A V+N +++Q+GT S P+    G+    S WGDVEHLFEGYDD QK         
Sbjct: 850  -ADMKAVVTNHDDKQTGTGSGPEAGPVGA-HPQSAWGDVEHLFEGYDDQQKAAIQKERTR 907

Query: 1527 XXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLA 1348
               EQKKMF+ARK           LNSAKF EVDPVHDEILRKKEEQDREKP RHL+R  
Sbjct: 908  RLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFP 967

Query: 1347 HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDD 1168
            HMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYATEMAK+LDP G LF+GRVIS+GDD
Sbjct: 968  HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDD 1027

Query: 1167 GDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFS 988
            GD  DGDERVPKSKDLEGVLGMESAVVIIDDSV+VWPHNKLNLIVVERY YFPCSRRQF 
Sbjct: 1028 GDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFG 1087

Query: 987  LPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGC 808
            L G SLLEIDHDER+EDGTLASSL VIER+H+ FFSHQ LD+VDVRNILA+EQ+KILAGC
Sbjct: 1088 LLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGC 1147

Query: 807  RIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGR 628
            RIVFSRVFPV E NPHL+  WQTAEQFGAVCT  IDDQVTHVVA SLGTDKVNWALSTGR
Sbjct: 1148 RIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGR 1207

Query: 627  FVVHPGWLEASALLYRRANEQDFAIKP 547
            FVVHPGW+EASALLYRRANEQDFAIKP
Sbjct: 1208 FVVHPGWVEASALLYRRANEQDFAIKP 1234


>gb|KDO83166.1| hypothetical protein CISIN_1g000897mg [Citrus sinensis]
          Length = 1218

 Score = 1172 bits (3033), Expect = 0.0
 Identities = 698/1287 (54%), Positives = 834/1287 (64%), Gaps = 30/1287 (2%)
 Frame = -3

Query: 4317 ASVEEISEEDFN-KQDVVTKVSKDSSDYKESKPISKGGSDG--RVWTMRDLYN-YSGYGR 4150
            ASVEEISEEDF  KQ+ V KV       KE+KPI  GG +   RVWTMRDLYN Y    R
Sbjct: 14   ASVEEISEEDFKIKQEEVVKV------VKETKPIKVGGGEAAARVWTMRDLYNKYPAICR 67

Query: 4149 -YNTGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXS-------GRDESVNA 3994
             Y  GL+NLAWAQAVQNKPLNEIFVM                  S       G+D+    
Sbjct: 68   GYGPGLHNLAWAQAVQNKPLNEIFVMEAEQDDVSKRSSPASSVASVNSGAAAGKDDK--- 124

Query: 3993 KEVDKVVIDDSGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDPMNVGELD 3814
            K V+KVVIDDSG                         ++   E  E+ LD +  +  ++ 
Sbjct: 125  KVVEKVVIDDSGDEIEK--------------------EEGELEEGEIELDLESESNEKVS 164

Query: 3813 FDSRNRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQAL 3634
               +       V SIREAL SV   D   SFE VCS L+  LE L  ++ +     K AL
Sbjct: 165  EQVKEEMKLINVESIREALESVLRGDI--SFEGVCSKLEFTLESLRELVNENNVPTKDAL 222

Query: 3633 VQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSL 3454
            +QL+F A+Q+V+S FCSMN   KEQ K+ LSRLLS +K+      S  Q+KE+E M+SSL
Sbjct: 223  IQLAFSAVQSVHSVFCSMNHVLKEQNKEILSRLLSLIKSHEPPLFSSNQIKEMEAMLSSL 282

Query: 3453 GLLSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGHAG 3274
                    TR +DK+K++  + GV  +DS  + EN  N    K  +     + M +    
Sbjct: 283  -------VTRANDKEKDMLAMHGVNGKDSNIVTENAVNDLNFKEKVPLPVDSLMQNKPL- 334

Query: 3273 TLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKS 3094
               +A + G PG +SRGV               LPSPTRE     PV + L VGDG  KS
Sbjct: 335  ---EASKPGPPGYRSRGVLLPLLDPHKVHDVDSLPSPTRETTPSVPVQRALVVGDGMVKS 391

Query: 3093 GFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDAD 2914
              +  K++ +AE  +  HYETDAL+A SSYQQKFGR++  MN  LPSPTPSEE  +GD D
Sbjct: 392  WAAAAKLSHNAEVHKTPHYETDALRAFSSYQQKFGRNSFFMNSELPSPTPSEESGDGDGD 451

Query: 2913 TNGEVSSSFTLSNLRTASTPILGQ-PVFSSPTLVNS----ASMQGPITTKNAAPVSS--- 2758
            T GE+SS+  +   +  + P LGQ PV S P  ++     +S+Q   T  N+AP SS   
Sbjct: 452  TGGEISSATAVDQPKPVNMPTLGQQPVSSQPMDISQPMDISSVQALTTANNSAPASSGYN 511

Query: 2757 ---VSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPV-NSRKQRT 2590
                 NP VKA  K+RDPRLRFA+S+  AL+LN +  P++H+APKVEP+  V +SRKQ+T
Sbjct: 512  PVVKPNPVVKAPIKSRDPRLRFASSN--ALNLNHQPAPILHNAPKVEPVGRVMSSRKQKT 569

Query: 2589 FDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVD 2410
             +EP +DG   K+QR G E S +V D K + GSGGWLED+    PQ+ N+N  +++AE +
Sbjct: 570  VEEPVLDGPALKRQRNGFENSGVVRDEKNIYGSGGWLEDTDMFEPQIMNRNLLVDSAESN 629

Query: 2409 SRTPVSVVSCPTNS--PNV---GNEQASVASTSTIASLPAILKDIAVNPTMLLNILKLGQ 2245
            SR   +  + P  S  PNV   GNE A   + ST  SLPA+LKDIAVNPTMLLNILK+GQ
Sbjct: 630  SRKLDNGATSPITSGTPNVVVSGNEPAPATTPSTTVSLPALLKDIAVNPTMLLNILKMGQ 689

Query: 2244 QQRLAAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIA 2068
            QQ+LAA+ QQKS D +   +H                               P +PS I 
Sbjct: 690  QQKLAADAQQKSNDSSMNTMH-------------------------------PPIPSSI- 717

Query: 2067 SISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQ 1888
               P DEL K+RMKPRDPRRVLHG+ LQ+SGS+G  +FK   P +  T+ +K+N N QKQ
Sbjct: 718  ---PPDELGKVRMKPRDPRRVLHGNALQRSGSLG-PEFKTDGPSAPCTQGSKENLNFQKQ 773

Query: 1887 EGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQ 1708
             G  +    LSQSV  PDIT+QFTKNLK+IAD MSVSQ  T   +VSQN   Q   +KS 
Sbjct: 774  LGAPEAKPVLSQSVLQPDITQQFTKNLKHIADFMSVSQPLTSEPMVSQNSPIQPGQIKSG 833

Query: 1707 RGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXX 1528
              D++A V+N +++Q+GT S P+    G+    S WGDVEHLFEGYDD QK         
Sbjct: 834  -ADMKAVVTNHDDKQTGTGSGPEAGPVGA-HPQSAWGDVEHLFEGYDDQQKAAIQKERTR 891

Query: 1527 XXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLA 1348
               EQKKMF+ARK           LNSAKF EVDPVHDEILRKKEEQDREKP RHL+R  
Sbjct: 892  RLEEQKKMFSARKLCLVLDLDHTLLNSAKFHEVDPVHDEILRKKEEQDREKPHRHLFRFP 951

Query: 1347 HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDD 1168
            HMGMWTKLRPGIW FLE+ASKL+E+HLYTMGNKLYATEMAK+LDP G LF+GRVIS+GDD
Sbjct: 952  HMGMWTKLRPGIWTFLERASKLFEMHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDD 1011

Query: 1167 GDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFS 988
            GD  DGDERVPKSKDLEGVLGMESAVVIIDDSV+VWPHNKLNLIVVERY YFPCSRRQF 
Sbjct: 1012 GDPFDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQFG 1071

Query: 987  LPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGC 808
            L G SLLEIDHDER+EDGTLASSL VIER+H+ FFSHQ LD+VDVRNILA+EQ+KILAGC
Sbjct: 1072 LLGPSLLEIDHDERSEDGTLASSLGVIERLHKIFFSHQSLDDVDVRNILAAEQRKILAGC 1131

Query: 807  RIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGR 628
            RIVFSRVFPV E NPHL+  WQTAEQFGAVCT  IDDQVTHVVA SLGTDKVNWALSTGR
Sbjct: 1132 RIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTKHIDDQVTHVVANSLGTDKVNWALSTGR 1191

Query: 627  FVVHPGWLEASALLYRRANEQDFAIKP 547
            FVVHPGW+EASALLYRRANEQDFAIKP
Sbjct: 1192 FVVHPGWVEASALLYRRANEQDFAIKP 1218


>ref|XP_010656789.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X3 [Vitis vinifera]
          Length = 1273

 Score = 1171 bits (3030), Expect = 0.0
 Identities = 694/1306 (53%), Positives = 832/1306 (63%), Gaps = 49/1306 (3%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLYNYSGYGR---- 4150
            ASVEEISEEDFNKQ+V           +E+KP     +D RVWTMRDL +   Y +    
Sbjct: 38   ASVEEISEEDFNKQEVRV--------LREAKP----KADTRVWTMRDLQDLYKYHQACSG 85

Query: 4149 YNTGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDKVVI 3970
            Y   LYNLAWAQAVQNKPLN+IFVM                    RD+S +AKEV KV+I
Sbjct: 86   YTPRLYNLAWAQAVQNKPLNDIFVMDDEESKRSSSSSNT-----SRDDSSSAKEVAKVII 140

Query: 3969 DDSGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDP--------MNVGELD 3814
            DDSG                         ++   E  E+ LD +P        ++V E +
Sbjct: 141  DDSGDEMDVKMDDVSEK------------EEGELEEGEIDLDSEPDVKDEGGVLDVNEPE 188

Query: 3813 FDSRNRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLD--IGHSE-- 3646
             D + R+L +RV SI+E L SV+V +AEKSF  VCS LQN L  L  V  +  +G S   
Sbjct: 189  IDLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVP 248

Query: 3645 -KQALVQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEF 3469
             K AL Q    AI+A+N  FCSMN N+KE  KD  SRLLS V+       S   +KE+E 
Sbjct: 249  TKDALAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEV 308

Query: 3468 MISSLGLLSVLPSTRVSDKQKELQDIDGVRER--DSANIGENESNRTYTKFALGSVSMAS 3295
            M+S L   +   S   SDK  ++Q  DG+     DS+      +  +  K +L S+S+ S
Sbjct: 309  MMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAKKLSLDSISVES 368

Query: 3294 MDHGHAGTLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPV 3115
             +  +    PDAL+ G+   + R +               LPSPT +AP CFPV K    
Sbjct: 369  YNQNN----PDALKPGLSSSRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNK---- 420

Query: 3114 GDGSFKSGFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEE 2935
                  S   T KVA + ++S +H YETDALKAVS+YQQKFG ++    D+LPSPTPSEE
Sbjct: 421  ------SELVTAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEE 474

Query: 2934 YENGDADTNGEVSSSFTLSNLRTASTPILGQPVFSSPTLVNSASMQGP------------ 2791
              +   D +GEVSSS T+S   TA+ P LG P+ SS   ++S+ +QGP            
Sbjct: 475  SGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQMDSSIVQGPTVGRNTSLVSSG 534

Query: 2790 -----------ITTKNAAPVSSVSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVH 2644
                       +  +N   V+S  N  ++ASAK+RDPRLR A+SD G+LDLN+R LP V 
Sbjct: 535  PHLDSSVVQGLVVPRNTGAVNSRFNSILRASAKSRDPRLRLASSDAGSLDLNERPLPAVS 594

Query: 2643 SAPKVEPIVP-VNSRKQRTFDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSV 2467
            ++PKV+P+   V+SRKQ++ +EP +DG +TK+QR GL     V D +TV  SGGWLEDS 
Sbjct: 595  NSPKVDPLGEIVSSRKQKSAEEPLLDGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSN 654

Query: 2466 NLGPQLSNKNTFMENAEVDSR---TPVSVVSCPTNSPNV---GNEQASVASTSTIASLPA 2305
             + PQ+ N+N  +EN   D +   + V+V     + P V   GNE   V +TST ASL +
Sbjct: 655  TVIPQMMNRNQLIENTGTDPKKLESKVTVTGIGCDKPYVTVNGNEHLPVVATSTTASLQS 714

Query: 2304 ILKDIAVNPTMLLNILKLGQQQRLAAEQQKSADPATIAIHXXXXXXXXXXXPLVNNASSM 2125
            +LKDIAVNP + +NI           EQQKS DPA   +            P  + A   
Sbjct: 715  LLKDIAVNPAVWMNIFN-------KVEQQKSGDPAKNTVLPPTSNSILGVVPPASVAPLK 767

Query: 2124 ASKILQIPAGTPAVPSQIASISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNI 1945
             S + Q PAG   VP       P DE  K+RMKPRDPRR+LH ++ Q+SGS G +QFK  
Sbjct: 768  PSALGQKPAGALQVPQT----GPMDESGKVRMKPRDPRRILHANSFQRSGSSGSEQFKT- 822

Query: 1944 VPPSSITRANKDNPNGQKQEGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQAST 1765
                          N QKQE Q +  S  S SV PPDI++QFTKNLKNIADLMS SQAS+
Sbjct: 823  --------------NAQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNIADLMSASQASS 868

Query: 1764 KPTIVSQNLSTQSVPVKSQRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEH 1585
                  Q LS+QSV V + R DV+A+VS+S +Q +   S P+ A AG  +S +TWGDVEH
Sbjct: 869  MTPTFPQILSSQSVQVNTDRMDVKATVSDSGDQLTANGSKPESA-AGPPQSKNTWGDVEH 927

Query: 1584 LFEGYDDHQKXXXXXXXXXXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEIL 1405
            LF+GYDD QK            EQKKMF+ARK           LNSAKFVEVDPVHDEIL
Sbjct: 928  LFDGYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFVEVDPVHDEIL 987

Query: 1404 RKKEEQDREKPQRHLYRLAHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK 1225
            RKKEEQDREK QRHL+R  HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK
Sbjct: 988  RKKEEQDREKSQRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK 1047

Query: 1224 LLDPNGALFSGRVISKGDDGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKL 1045
            +LDP G LF+GRVISKGDDGD++DGDERVPKSKDLEGVLGMESAVVIIDDSV+VWPHNKL
Sbjct: 1048 VLDPKGVLFAGRVISKGDDGDVLDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKL 1107

Query: 1044 NLIVVERYIYFPCSRRQFSLPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLD 865
            NLIVVERY YFPCSRRQF LPG SLLEIDHDER EDGTLASSLAVIERIHQ+FFS++ LD
Sbjct: 1108 NLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHQSFFSNRALD 1167

Query: 864  EVDVRNILASEQQKILAGCRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTH 685
            EVDVRNILASEQ+KILAGCRIVFSRVFPV E NPHL+  WQTAE FGAVCTNQID+QVTH
Sbjct: 1168 EVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAESFGAVCTNQIDEQVTH 1227

Query: 684  VVALSLGTDKVNWALSTGRFVVHPGWLEASALLYRRANEQDFAIKP 547
            VVA SLGTDKVNWALSTGRFVVHPGW+EASALLYRRANEQDFAIKP
Sbjct: 1228 VVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP 1273


>ref|XP_010656784.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X1 [Vitis vinifera]
          Length = 1285

 Score = 1170 bits (3028), Expect = 0.0
 Identities = 695/1314 (52%), Positives = 835/1314 (63%), Gaps = 57/1314 (4%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLYNYSGYGR---- 4150
            ASVEEISEEDFNKQ+V           +E+KP     +D RVWTMRDL +   Y +    
Sbjct: 38   ASVEEISEEDFNKQEVRV--------LREAKP----KADTRVWTMRDLQDLYKYHQACSG 85

Query: 4149 YNTGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDKVVI 3970
            Y   LYNLAWAQAVQNKPLN+IFVM                    RD+S +AKEV KV+I
Sbjct: 86   YTPRLYNLAWAQAVQNKPLNDIFVMDDEESKRSSSSSNT-----SRDDSSSAKEVAKVII 140

Query: 3969 DDSGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDP--------MNVGELD 3814
            DDSG                         ++   E  E+ LD +P        ++V E +
Sbjct: 141  DDSGDEMDVKMDDVSEK------------EEGELEEGEIDLDSEPDVKDEGGVLDVNEPE 188

Query: 3813 FDSRNRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLD--IGHSE-- 3646
             D + R+L +RV SI+E L SV+V +AEKSF  VCS LQN L  L  V  +  +G S   
Sbjct: 189  IDLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVP 248

Query: 3645 -KQALVQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEF 3469
             K AL Q    AI+A+N  FCSMN N+KE  KD  SRLLS V+       S   +KE+E 
Sbjct: 249  TKDALAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEV 308

Query: 3468 MISSLGLLSVLPSTRVSDKQKELQDIDGVRER--DSANIGENESNRTYTKFALGSVSMAS 3295
            M+S L   +   S   SDK  ++Q  DG+     DS+      +  +  K +L S+S+ S
Sbjct: 309  MMSFLDTPAAQSSAEASDKVNDVQVTDGMNRNILDSSVESSGRAFASAKKLSLDSISVES 368

Query: 3294 MDHGHAGTLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPV 3115
             +  +    PDAL+ G+   + R +               LPSPT +AP CFPV K    
Sbjct: 369  YNQNN----PDALKPGLSSSRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNK---- 420

Query: 3114 GDGSFKSGFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEE 2935
                  S   T KVA + ++S +H YETDALKAVS+YQQKFG ++    D+LPSPTPSEE
Sbjct: 421  ------SELVTAKVAHETQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEE 474

Query: 2934 YENGDADTNGEVSSSFTLSNLRTASTPILGQPVFSSPTLVNSASMQGP------------ 2791
              +   D +GEVSSS T+S   TA+ P LG P+ SS   ++S+ +QGP            
Sbjct: 475  SGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAPQMDSSIVQGPTVGRNTSLVSSG 534

Query: 2790 -----------ITTKNAAPVSSVSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVH 2644
                       +  +N   V+S  N  ++ASAK+RDPRLR A+SD G+LDLN+R LP V 
Sbjct: 535  PHLDSSVVQGLVVPRNTGAVNSRFNSILRASAKSRDPRLRLASSDAGSLDLNERPLPAVS 594

Query: 2643 SAPKVEPIVP-VNSRKQRTFDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSV 2467
            ++PKV+P+   V+SRKQ++ +EP +DG +TK+QR GL     V D +TV  SGGWLEDS 
Sbjct: 595  NSPKVDPLGEIVSSRKQKSAEEPLLDGPVTKRQRNGLTSPATVRDAQTVVASGGWLEDSN 654

Query: 2466 NLGPQLSNKNTFMENAEVDSR---TPVSVVSCPTNSPNV---GNEQASVASTSTIASLPA 2305
             + PQ+ N+N  +EN   D +   + V+V     + P V   GNE   V +TST ASL +
Sbjct: 655  TVIPQMMNRNQLIENTGTDPKKLESKVTVTGIGCDKPYVTVNGNEHLPVVATSTTASLQS 714

Query: 2304 ILKDIAVNPTMLLNILKLGQQQRLAAEQQKSADPATIAIHXXXXXXXXXXXPLVNNASSM 2125
            +LKDIAVNP + +NI           EQQKS DPA   +            P  + A   
Sbjct: 715  LLKDIAVNPAVWMNIFN-------KVEQQKSGDPAKNTVLPPTSNSILGVVPPASVAPLK 767

Query: 2124 ASKILQIPAGTPAVPSQIASI--------SPQDELNKIRMKPRDPRRVLHGSTLQKSGSM 1969
             S + Q PAG   VP     +        +PQDE  K+RMKPRDPRR+LH ++ Q+SGS 
Sbjct: 768  PSALGQKPAGALQVPQTGPMLVTSCNNAQNPQDESGKVRMKPRDPRRILHANSFQRSGSS 827

Query: 1968 GHDQFKNIVPPSSITRANKDNPNGQKQEGQADKISALSQSVAPPDITRQFTKNLKNIADL 1789
            G +QFK                N QKQE Q +  S  S SV PPDI++QFTKNLKNIADL
Sbjct: 828  GSEQFKT---------------NAQKQEDQTETKSVPSHSVNPPDISQQFTKNLKNIADL 872

Query: 1788 MSVSQASTKPTIVSQNLSTQSVPVKSQRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSP 1609
            MS SQAS+      Q LS+QSV V + R DV+A+VS+S +Q +   S P+ A AG  +S 
Sbjct: 873  MSASQASSMTPTFPQILSSQSVQVNTDRMDVKATVSDSGDQLTANGSKPESA-AGPPQSK 931

Query: 1608 STWGDVEHLFEGYDDHQKXXXXXXXXXXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEV 1429
            +TWGDVEHLF+GYDD QK            EQKKMF+ARK           LNSAKFVEV
Sbjct: 932  NTWGDVEHLFDGYDDQQKAAIQRERARRIEEQKKMFSARKLCLVLDLDHTLLNSAKFVEV 991

Query: 1428 DPVHDEILRKKEEQDREKPQRHLYRLAHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNK 1249
            DPVHDEILRKKEEQDREK QRHL+R  HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNK
Sbjct: 992  DPVHDEILRKKEEQDREKSQRHLFRFPHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNK 1051

Query: 1248 LYATEMAKLLDPNGALFSGRVISKGDDGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSV 1069
            LYATEMAK+LDP G LF+GRVISKGDDGD++DGDERVPKSKDLEGVLGMESAVVIIDDSV
Sbjct: 1052 LYATEMAKVLDPKGVLFAGRVISKGDDGDVLDGDERVPKSKDLEGVLGMESAVVIIDDSV 1111

Query: 1068 KVWPHNKLNLIVVERYIYFPCSRRQFSLPGLSLLEIDHDERAEDGTLASSLAVIERIHQN 889
            +VWPHNKLNLIVVERY YFPCSRRQF LPG SLLEIDHDER EDGTLASSLAVIERIHQ+
Sbjct: 1112 RVWPHNKLNLIVVERYTYFPCSRRQFGLPGPSLLEIDHDERPEDGTLASSLAVIERIHQS 1171

Query: 888  FFSHQLLDEVDVRNILASEQQKILAGCRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTN 709
            FFS++ LDEVDVRNILASEQ+KILAGCRIVFSRVFPV E NPHL+  WQTAE FGAVCTN
Sbjct: 1172 FFSNRALDEVDVRNILASEQRKILAGCRIVFSRVFPVGEANPHLHPLWQTAESFGAVCTN 1231

Query: 708  QIDDQVTHVVALSLGTDKVNWALSTGRFVVHPGWLEASALLYRRANEQDFAIKP 547
            QID+QVTHVVA SLGTDKVNWALSTGRFVVHPGW+EASALLYRRANEQDFAIKP
Sbjct: 1232 QIDEQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALLYRRANEQDFAIKP 1285


>ref|XP_012459418.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            isoform X2 [Gossypium raimondii]
          Length = 1251

 Score = 1170 bits (3027), Expect = 0.0
 Identities = 695/1291 (53%), Positives = 836/1291 (64%), Gaps = 34/1291 (2%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGG---SDGRVWTMRDLYNYSGYGR- 4150
            AS+EEISEEDFNKQ+V  K+ K+S         SKGG   S+ RVWTM+DL  Y    R 
Sbjct: 20   ASIEEISEEDFNKQEV--KILKESKS-------SKGGEANSNSRVWTMQDLCKYPSVIRG 70

Query: 4149 YNTGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRD-ESVNAKE----- 3988
            Y +GLYN AWAQAVQNKPLN+IFV                         SVN+KE     
Sbjct: 71   YASGLYNFAWAQAVQNKPLNDIFVKELEQQPQQDENNNSKRSSPSSSVASVNSKEEKGYS 130

Query: 3987 ---VDKVVIDDSGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDPMNVGEL 3817
                D+VVIDD                           ++   E  E+ LD +P+    L
Sbjct: 131  GNSADRVVIDDDTGDEMEEDKIVNLDK-----------EEGELEEGEIDLDSEPVKERVL 179

Query: 3816 DFDSRN----RKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHS 3649
              +  N     +LEKRV+ IR  L  ++V +AEKSFE VCS LQN LE L G++ + G  
Sbjct: 180  SSEDGNVGISDELEKRVNLIRGVLEGITVIEAEKSFEVVCSRLQNALESLQGLVFEYGVP 239

Query: 3648 EKQALVQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEF 3469
             K  L++L   A+ AVNSAF ++N N KEQ    LSRLLS VK          +MKEIE 
Sbjct: 240  TKDTLIEL---ALGAVNSAFVALNSNLKEQNVSILSRLLSVVKGFDPPLFPLDKMKEIEV 296

Query: 3468 MISSLGLLSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMD 3289
            M     LLS+    R  D +KE++ ++   ++D   + EN                    
Sbjct: 297  M-----LLSLNSPARAIDSEKEIKIVN---KKDPDALAENV------------------- 329

Query: 3288 HGHAGTLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGD 3109
             GH   L +AL+ G+P  +++G+               LPSPTRE   C PV + L  GD
Sbjct: 330  -GH--DLTEALKPGVPNFRNKGLSLPLLDLHKDHDADSLPSPTRETTPCLPVLRPLTTGD 386

Query: 3108 GSFKSGFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYE 2929
            G  +SGF   K  PDAE +++H YETDALKA SSYQ+KFGR +   +DRLPSPTPSEE  
Sbjct: 387  GMVRSGFMMAKGLPDAERNKMHPYETDALKAFSSYQRKFGRGSFFSSDRLPSPTPSEESG 446

Query: 2928 NGDADTNGEVSSSFTLSNLRTASTPILGQPVFSSPTLVNSAS----MQGPITTKNAAPV- 2764
            +   DT GEVSSS ++ N +  + P++G P+ SS   ++SAS    MQG  TT+NA PV 
Sbjct: 447  DEGCDTGGEVSSSSSIGNFKP-NLPVMGHPIVSSAPHIDSASSTSSMQGQFTTQNATPVT 505

Query: 2763 -SSVSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPV-NSRKQRT 2590
             SS SN   KASAK+RDPRLRFANS+V ALDLNQR L   H+A KV P+  + + RK+++
Sbjct: 506  VSSASNILSKASAKSRDPRLRFANSNVSALDLNQRPL---HNASKVPPVSGIMDPRKKKS 562

Query: 2589 FDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVD 2410
             +EP +DG   K+Q+  LE    V D++ V+G+GGWLED+ N   Q++N+N  ME  + +
Sbjct: 563  TEEPVLDGPAPKRQKNELENFG-VRDVQAVSGNGGWLEDTDNCESQITNRNQTMETLDSN 621

Query: 2409 SR------TPVSVVSCPTNSPNVGNEQASVASTSTIASLPAILKDIAVNPTMLLNILKLG 2248
            SR      T  S +S  TN+    NEQ  +   S   SLPA+LKDIAVNPTML+NILK+G
Sbjct: 622  SRKMEHGVTCSSTLSGKTNTTVNKNEQVPLTGMSN-PSLPALLKDIAVNPTMLINILKMG 680

Query: 2247 QQQRLAAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMASKIL-QIPAGTPAVPSQ 2074
            QQQRL +E QQK+ DP    ++           P  N   S +  ++    +GT + P+ 
Sbjct: 681  QQQRLPSESQQKTPDPLKNTLYQPSSNPVLGVIPPANVIPSPSVNVVPSSSSGTLSKPAG 740

Query: 2073 IASISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFK-NIVPPSSITRANKDNPNG 1897
                 P DE  KIRMKPRDPRRVLHG+ LQKSGS+G DQ K N   P+S T+ +KDN N 
Sbjct: 741  NLQGPPLDESCKIRMKPRDPRRVLHGNVLQKSGSVGPDQLKTNGTSPASSTQGSKDNMNA 800

Query: 1896 QKQ-EGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVP 1720
            QKQ E Q +      Q V PPDI +QFT++LKNIA +MS  Q+      VSQNL +Q + 
Sbjct: 801  QKQLENQIEAKPIQCQFVPPPDIAQQFTQSLKNIAGMMSGPQSFAGLPAVSQNLVSQPIQ 860

Query: 1719 VKSQRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXX 1540
            VKS+  D     SNSE+QQ+GT +AP+  V     S + WGDVEHLFE YDD QK     
Sbjct: 861  VKSETADKNTKGSNSEDQQTGTGTAPEAGVTCPPPSQNAWGDVEHLFEKYDDRQKAAIQR 920

Query: 1539 XXXXXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHL 1360
                   EQKKMFAARK           LNSAKF+EVDPVH+EILRKKEEQDREKPQRHL
Sbjct: 921  ERARRIEEQKKMFAARKLCLVLDLDHTLLNSAKFIEVDPVHEEILRKKEEQDREKPQRHL 980

Query: 1359 YRLAHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVIS 1180
            +R  HMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAK+LDP G LF+GRVIS
Sbjct: 981  FRFHHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVIS 1040

Query: 1179 KGDDGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSR 1000
            +GDDGD  DGDERVP+SKDLEGVLGMES+VVIIDDSV+VWPHNKLNLIVVERY YFPCSR
Sbjct: 1041 RGDDGDPFDGDERVPRSKDLEGVLGMESSVVIIDDSVRVWPHNKLNLIVVERYTYFPCSR 1100

Query: 999  RQFSLPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKI 820
            RQF L G SLLEIDHDER EDGTLASSLAVIERIHQNFFSHQ LD++DVRNILA+EQ+KI
Sbjct: 1101 RQFGLLGPSLLEIDHDERPEDGTLASSLAVIERIHQNFFSHQNLDDLDVRNILATEQRKI 1160

Query: 819  LAGCRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWAL 640
            L+GCRIVFSRVFPV E NPHL+  WQTAEQFGAVCTNQID+ VTHVVA SLGTDKVNWAL
Sbjct: 1161 LSGCRIVFSRVFPVGEANPHLHPLWQTAEQFGAVCTNQIDEHVTHVVANSLGTDKVNWAL 1220

Query: 639  STGRFVVHPGWLEASALLYRRANEQDFAIKP 547
            STG+FVVHPGW+EASALLYRRANE DFAIKP
Sbjct: 1221 STGKFVVHPGWVEASALLYRRANEHDFAIKP 1251


>ref|XP_004310239.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Fragaria vesca subsp. vesca]
          Length = 1244

 Score = 1154 bits (2984), Expect = 0.0
 Identities = 690/1287 (53%), Positives = 831/1287 (64%), Gaps = 32/1287 (2%)
 Frame = -3

Query: 4314 SVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGGS-DG-RVWTMRDLYNYSGY-GRYN 4144
            SVEEISEEDF KQ+            K  +P S GGS DG R WT  ++  +  + G   
Sbjct: 37   SVEEISEEDFVKQES-----------KAVEPKSNGGSGDGARFWTFHEVLAHPHFRGIGG 85

Query: 4143 TGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDKVVIDD 3964
             GL NLAWAQAVQNKP N++ V                   SG +         KVVI D
Sbjct: 86   GGLANLAWAQAVQNKPFNDLLVKLDSDEKSKQQQQQRSSVSSGNE---------KVVIID 136

Query: 3963 SGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQEPKEVALDCDPMNVGELDFDSR------ 3802
            SG                        V+K  +E +E          GE+ FDS       
Sbjct: 137  SGDEMD--------------------VEKEEEELEE----------GEIGFDSECGDNDK 166

Query: 3801 ------NRKLEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQ 3640
                  N   EKRV+ +REAL S+++ +AEKSF  VC    + LE L GVL +I  S K+
Sbjct: 167  AAGSVGNGVWEKRVNLLREALESLTITEAEKSFGDVCHRFLDSLESLRGVLSEINVSTKE 226

Query: 3639 ALVQLSFVAIQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMIS 3460
            ALVQ  F A++A++S F SM+ ++KEQ KD LSR+LS+ K+         Q+KEIE M S
Sbjct: 227  ALVQQLFNAVRAISSVFRSMSADQKEQNKDVLSRILSSAKSDP-SPFPAEQLKEIEVMSS 285

Query: 3459 SLGLLSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFALGSVSMASMDHGH 3280
            S+      P T+   K+  +Q I+GV + DS   G N S+        GS +  S+ H +
Sbjct: 286  SMDS----PQTKAGTKENGIQCINGVYKTDSDTSGANASHVFTYAANTGSDTQVSVVHSN 341

Query: 3279 AGTLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSF 3100
                 +  R+G    K RG+               LPSPTRE P+CFP  K + V +G  
Sbjct: 342  PNISSEVPRSGSSSFKGRGLMLPLLDLHMDHDEDSLPSPTREPPACFPAQKPVVVENGMV 401

Query: 3099 K-SGFSTPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEY-EN 2926
            K SG+ T + A D E S++H YET+ALKAVSSYQQKF R++  +   LPSPTPSEE  +N
Sbjct: 402  KKSGWETARAALDVEGSKMHVYETEALKAVSSYQQKFSRNSF-LTSELPSPTPSEEEGDN 460

Query: 2925 GDADTNGEVSSSFTLSNLRTASTPILGQPVFSS---PTLVNSASMQGPITTKNAAPVSSV 2755
            GD    GEVSSS   +N+RT   P+ G+ V SS    TL  S+ M G IT K A+PVS  
Sbjct: 461  GDDAAVGEVSSSSASNNVRTPQPPVSGRQVVSSVPATTLPGSSGMHGLITAKTASPVSLG 520

Query: 2754 SNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVNSRKQRTFDEPN 2575
            SN   K+SAK+RDPRLRFANSD GAL LNQ++   VH+APKV+ ++ ++SRK ++ ++ N
Sbjct: 521  SNMPNKSSAKSRDPRLRFANSDAGALTLNQQSSIQVHNAPKVDSVITLSSRKHKSPEDSN 580

Query: 2574 MDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDSRTPV 2395
             DG  +K+QR     S +    KT  G+G WLED  ++GP L N+N  +E  E D R  V
Sbjct: 581  FDGPESKRQRGA--NSVVGWGAKTSFGNGVWLEDGSSVGPHLINRNQTVEKKEADPRKMV 638

Query: 2394 SVVSCP------TNSPNVGNEQASVASTSTIASLPAILKDIAVNPTMLLNILKLGQ-QQR 2236
            +V S P      +N  N  NE+  + + S + SLPAI KDIAVNPTML+NILKL + QQ 
Sbjct: 639  NVSSSPGTVEGNSNGQNTANEKVPLVAPSLV-SLPAIFKDIAVNPTMLVNILKLAEAQQN 697

Query: 2235 LAAEQQKSA---DPATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIAS 2065
             AA  +K +    P++ +I             LVN+ S  +  +L     TP + SQ   
Sbjct: 698  AAAPARKESLTYPPSSSSI--------PGTAALVNDPSKTSGALL-----TPTICSQK-- 742

Query: 2064 ISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQE 1885
             +P DE  KIRMK RDPRR+LHG+ LQ SGS+GH+Q +NIVPP S ++AN D+ NG+KQ+
Sbjct: 743  -TPTDEAGKIRMKLRDPRRLLHGNALQNSGSVGHEQSRNIVPPLSSSQANNDDMNGKKQD 801

Query: 1884 GQADKISALSQSVA--PPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKS 1711
             QAD  S  SQS A   PDI  QFTKNLKNIAD++SVSQ ST P   SQNLST+ + +  
Sbjct: 802  SQADNNSVTSQSGALGAPDIASQFTKNLKNIADIISVSQVSTSPATPSQNLSTELISINP 861

Query: 1710 QRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXX 1531
               D++A     EEQ +G+ISA     AG+SRSP+TWGDVEHLFEGYDD QK        
Sbjct: 862  DNVDLKA-----EEQHTGSISASVPTAAGASRSPATWGDVEHLFEGYDDKQKAAIQRERA 916

Query: 1530 XXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRL 1351
                EQKKMFAA K           LNSAKFVEVDPVHDEILRKKEEQDR++PQRHL+R 
Sbjct: 917  RRIEEQKKMFAAHKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDRKEPQRHLFRF 976

Query: 1350 AHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGD 1171
             HMGMWTKLRPG+W FLEKAS L+E+HLYTMGNKLYATEMAK+LDP GALF+GRVIS+GD
Sbjct: 977  QHMGMWTKLRPGVWKFLEKASHLFEMHLYTMGNKLYATEMAKVLDPTGALFAGRVISRGD 1036

Query: 1170 DGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQF 991
            DGD  DGDERVPKSKDLEGVLGMESAVVIIDDSV+VWPHNKLNLIVVERY YFPCSRRQF
Sbjct: 1037 DGDPYDGDERVPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFPCSRRQF 1096

Query: 990  SLPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAG 811
             L G SLLEIDHDER EDGTLASSLAVIE+IHQ FFSH  LDE DVRNILASEQQKIL G
Sbjct: 1097 GLLGPSLLEIDHDERHEDGTLASSLAVIEKIHQIFFSHPSLDEADVRNILASEQQKILGG 1156

Query: 810  CRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTG 631
            CRIVFSRVFPV EVNPHL+  WQTAEQFGAVCTNQIDDQVTHVVA SLGTDKVNWALS+G
Sbjct: 1157 CRIVFSRVFPVGEVNPHLHPLWQTAEQFGAVCTNQIDDQVTHVVANSLGTDKVNWALSSG 1216

Query: 630  RFVVHPGWLEASALLYRRANEQDFAIK 550
            ++VVHPGW+EASALLYRRANEQDFAIK
Sbjct: 1217 KYVVHPGWVEASALLYRRANEQDFAIK 1243


>ref|XP_008222368.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Prunus mume]
          Length = 1194

 Score = 1153 bits (2983), Expect = 0.0
 Identities = 635/994 (63%), Positives = 727/994 (73%), Gaps = 10/994 (1%)
 Frame = -3

Query: 3498 SPGQMKEIEFMISSLGLLSVLPSTRVSDKQKELQDIDGVRERDSANIGENESNRTYTKFA 3319
            SP QMKEI  MISS+    VL  T+   K+ E++ ID V   DS     N S+   +   
Sbjct: 221  SPEQMKEIGVMISSVDFPDVLVRTKAGIKENEIKIIDEVNNEDSDASAVNASHALTSTAN 280

Query: 3318 LGSVSMASMDHGHAGTLPDALRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCF 3139
              S S  ++ H +   L +  R G+  +K RGV               LPSPTRE PSCF
Sbjct: 281  FASDS--AVVHNNPIMLSEVPRPGVSSLKGRGVLLPLLDLHKDHDADSLPSPTRETPSCF 338

Query: 3138 PVFKTLPVGDGSFKSGF--STPKVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMND 2965
            PV  TL V DG  KS    +T +VA +AE+SRLH YET+ALKAVSSYQQKF RS+  M++
Sbjct: 339  PVQNTLVVADGMVKSASDTATARVALNAEDSRLHSYETEALKAVSSYQQKFNRSSFLMSE 398

Query: 2964 RLPSPTPSEEYENGDADTNGEVSSSFTLSNLRTASTPILGQPVFS-SPTLVNSASMQGPI 2788
            RLPSPTPSE+  NGD DT GEVSSS + SNLRT+ +P+ G+ + S SP  V S+SMQG  
Sbjct: 399  RLPSPTPSEDGGNGDDDTGGEVSSS-SASNLRTSCSPMSGRQIVSPSPIPVGSSSMQGRA 457

Query: 2787 TTKNAAPVSSVSNPTVKASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVN 2608
            T K+AAP +S  + T+KASAK+RDPRLRFANSD+GAL+LNQ+   +VHSAPKV+ ++ ++
Sbjct: 458  TAKSAAPPNSEPSMTIKASAKSRDPRLRFANSDMGALNLNQQPSTVVHSAPKVDSVITLS 517

Query: 2607 SRKQRTFDEPNMDGHLTKKQRMGLEKSRIVSDIKTVAGSGGWLEDSVNLGPQLSNKNTFM 2428
            SRKQ+  +E   DG   K+QR  LE S IV D KT +GSGGWLED   +GP L++KN  +
Sbjct: 518  SRKQKPLEESRFDGPALKRQRNALENSGIVGDAKTASGSGGWLEDIGGVGPHLNSKNQTV 577

Query: 2427 ENAEVDSRTPVSVVSCP------TNSPNVGNEQASVASTSTIASLPAILKDIAVNPTMLL 2266
            ENAE D R  V V+S P      TN PN  NE  S+   ST ASLPA+LKDIAVNPTMLL
Sbjct: 578  ENAETDPRKVVKVLSSPSIVDGNTNGPNSANEHVSLMGAST-ASLPALLKDIAVNPTMLL 636

Query: 2265 NILKLGQQQRLAAE-QQKSADPATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTP 2089
            N+LK+GQQQRLAAE QQKSADP     H            L  N  S  S ILQ PAGT 
Sbjct: 637  NLLKMGQQQRLAAEAQQKSADPPKTTTHPTSSSSILVSAAL-GNVPSKTSGILQTPAGTL 695

Query: 2088 AVPSQIASISPQDELNKIRMKPRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKD 1909
             V SQ A +   DE  K+RMKPRDPRR LHG+ LQKSGS+GH+QF+NIVPP S  + NKD
Sbjct: 696  PVSSQKALM---DESGKVRMKPRDPRRALHGNALQKSGSLGHEQFRNIVPPLSSIQGNKD 752

Query: 1908 NPNGQKQEGQADKISALSQSVAPPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQ 1729
            N NGQ     ADK    +QS+  PDITRQFTKNLKNIAD+MSVS  ST P I SQ++S+Q
Sbjct: 753  NLNGQ-----ADKKPVTAQSLDAPDITRQFTKNLKNIADIMSVSNVSTSPAIASQSVSSQ 807

Query: 1728 SVPVKSQRGDVRASVSNSEEQQSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXX 1549
             VP+K +R D++      EEQ+  +ISA + A AG SRSP  WGDVEHLFEGYDD QK  
Sbjct: 808  PVPIKPERIDLKP-----EEQRPESISASEAAAAGPSRSPVMWGDVEHLFEGYDDQQKAA 862

Query: 1548 XXXXXXXXXXEQKKMFAARKXXXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQ 1369
                      EQKKMFAA K           LNSAKFVEVDPVHDEILRKKEEQDREKP+
Sbjct: 863  IQRERTRRIEEQKKMFAAHKLCLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKPR 922

Query: 1368 RHLYRLAHMGMWTKLRPGIWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGR 1189
            RHL+R  HMGMWTKLRPGIWNFLEKAS+L+ELHLYTMGNKLYATEMAK+LDP GALF+GR
Sbjct: 923  RHLFR--HMGMWTKLRPGIWNFLEKASQLFELHLYTMGNKLYATEMAKVLDPTGALFAGR 980

Query: 1188 VISKGDDGDLVDGDERVPKSKDLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFP 1009
            VIS+GDDGD  DGDER+PKSKDLEGVLGMESAVVIIDDSV+VWPHNKLNLIVVERY YFP
Sbjct: 981  VISRGDDGDPEDGDERIPKSKDLEGVLGMESAVVIIDDSVRVWPHNKLNLIVVERYTYFP 1040

Query: 1008 CSRRQFSLPGLSLLEIDHDERAEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQ 829
            CSRRQF L G SLLEIDHDER EDGTLASSLAVIE+IHQ FFSH  LDE DVRNILASEQ
Sbjct: 1041 CSRRQFGLLGPSLLEIDHDERQEDGTLASSLAVIEKIHQLFFSHSSLDEADVRNILASEQ 1100

Query: 828  QKILAGCRIVFSRVFPVDEVNPHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVN 649
            +KILAGCRIVFSRVFPV EV PHL+  WQTAEQFGAVCTNQIDDQVTHVVA SLGTDKVN
Sbjct: 1101 RKILAGCRIVFSRVFPVGEVKPHLHPLWQTAEQFGAVCTNQIDDQVTHVVANSLGTDKVN 1160

Query: 648  WALSTGRFVVHPGWLEASALLYRRANEQDFAIKP 547
            WALS+G++VVHPGW+EASALLYRRANEQDFAIKP
Sbjct: 1161 WALSSGKYVVHPGWVEASALLYRRANEQDFAIKP 1194



 Score =  107 bits (268), Expect = 8e-20
 Identities = 72/155 (46%), Positives = 82/155 (52%), Gaps = 2/155 (1%)
 Frame = -3

Query: 4416 KEIEET-PSMMGKXXXXXXXXXXXXXXXXXXXXSASVEEISEEDFNKQDVVTKVSKDSSD 4240
            KEIEET   +MGK                      SVEEISEEDF KQ+      K  + 
Sbjct: 15   KEIEETLGGLMGKDESAKVVEDVEEGEISDS---TSVEEISEEDFVKQE------KQEAK 65

Query: 4239 YKESKPISKGGSDGRVWTMRDLYNYSGYGRYNTGLYNLAWAQAVQNKPLNEIFVM-XXXX 4063
                +  S GG   RVWTMRD+YNY G+  Y +GL NLAWAQAVQNKPLNE+FVM     
Sbjct: 66   VPPMESKSNGGDASRVWTMRDIYNYPGFRGYGSGLANLAWAQAVQNKPLNELFVMDVDSE 125

Query: 4062 XXXXXXXXXXXXXXSGRDESVNAKEVDKVVIDDSG 3958
                          S R++  NAKEVDKVVI DSG
Sbjct: 126  EKLKRSSSSLSLNSSSREDRSNAKEVDKVVIVDSG 160


>ref|XP_011656791.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 3
            [Cucumis sativus] gi|700191214|gb|KGN46418.1|
            hypothetical protein Csa_6G091910 [Cucumis sativus]
          Length = 1251

 Score = 1142 bits (2953), Expect = 0.0
 Identities = 666/1273 (52%), Positives = 820/1273 (64%), Gaps = 16/1273 (1%)
 Frame = -3

Query: 4317 ASVEEISEEDFNKQDVVTKVSKDSSDYKESKPISKGGSDGRVWTMRDLY-NYSGYGR-YN 4144
            ASVEEISEEDFNK D        S+  K   P      + RVWTM DLY NY      Y 
Sbjct: 21   ASVEEISEEDFNKLD-------SSASPKVVVPSKDSNRETRVWTMSDLYKNYPAMRHGYA 73

Query: 4143 TGLYNLAWAQAVQNKPLNEIFVMXXXXXXXXXXXXXXXXXXSGRDESVNAKEVDKVVIDD 3964
            +GLYNLAWAQAVQNKPLN+IFVM                  +  D S   KE D+VVIDD
Sbjct: 74   SGLYNLAWAQAVQNKPLNDIFVMEADLDEKSKHSSSTPFGNAKDDGSNTTKEEDRVVIDD 133

Query: 3963 SGXXXXXXXXXXXXXXXXXXXXXXEPVQKAAQE---PKEVALDCDPMNVGELDFDSRNRK 3793
            SG                      +   +  +E    K +  D   M++   +FD   ++
Sbjct: 134  SGDEMNCDNANGEKEEGELEEGEIDMDTEFVEEVADSKAMLSDSRDMDINGQEFDLETKE 193

Query: 3792 LEKRVHSIREALVSVSVFDAEKSFEQVCSLLQNILEDLLGVLLDIGHSEKQALVQLSFVA 3613
            L++ +  I++ L  V++  A+KSF++VCS + + +E  + +L       K AL+Q  + A
Sbjct: 194  LDELLKFIQKTLDGVTIDAAQKSFQEVCSQIHSSIETFVELLQGKVVPRKDALIQRLYAA 253

Query: 3612 IQAVNSAFCSMNQNEKEQRKDSLSRLLSTVKNRLLHHLSPGQMKEIEFMISSLGLLSVLP 3433
            ++ +NS FCSMN +EKE+ K+ LSRLLS VKN      SP Q+K +E  + S   L  LP
Sbjct: 254  LRLINSVFCSMNLSEKEEHKEHLSRLLSYVKNCDPPLFSPEQIKSVEVKMPSTDSLDHLP 313

Query: 3432 STRVSDKQKELQDIDGVRERD--SANIGENESNRTYTKFALGSVSMASMDHGHAGTLPDA 3259
            S R S K+ E+   +GV++ D  SA    +       K A  S+        +   L + 
Sbjct: 314  SMRGSAKEVEIHIPNGVKDMDFYSAYTSTSSQLTPSNKLASDSIPFGVKGKNNLNILSEG 373

Query: 3258 LRTGMPGVKSRGVXXXXXXXXXXXXXXXLPSPTREAPSCFPVFKTLPVGDGSFKSGFSTP 3079
            L++G+  +K RG                LPSPTREAP+ F V K          SG +  
Sbjct: 374  LQSGVSSIKGRGPLLPLLDLHKDHDADSLPSPTREAPTIFSVQK----------SGNAPT 423

Query: 3078 KVAPDAEESRLHHYETDALKAVSSYQQKFGRSTISMNDRLPSPTPSEEYENGDADTNGEV 2899
            K+A   + SR H YETDALKAVS+YQQKFGRS+ SM DRLPSPTPSEE++ G  D  GEV
Sbjct: 424  KMAFPVDGSRSHPYETDALKAVSTYQQKFGRSSFSMADRLPSPTPSEEHDGG-GDIGGEV 482

Query: 2898 SSSFTLSNLRTASTPILGQPVFSSPTL-------VNSASMQGPITTKNAAPVSSVSNPTV 2740
            SSS  + +L++++    GQ   S+  +       ++S+S +  I+  N AP SSVSNPTV
Sbjct: 483  SSSSIIRSLKSSNVSKPGQKSNSASNVSTGLFPNMDSSSTRVLISPLNVAPPSSVSNPTV 542

Query: 2739 KASAKNRDPRLRFANSDVGALDLNQRTLPMVHSAPKVEPIVPVNSRKQRTFDEPNMDGHL 2560
            K  AK+RDPRLR  NSD   +DLN RT+  V S+  +E    ++ RKQ+   EPN DG  
Sbjct: 543  KPLAKSRDPRLRIVNSDASGMDLNPRTMASVQSSSILESAATLHLRKQKMDGEPNTDGPE 602

Query: 2559 TKKQRMGLEKSRIV-SDIKTVAGSGGWLEDSVNLGPQLSNKNTFMENAEVDSRTPVSVVS 2383
             K+ R+G +   +  SD++ V+GSGGWLED++  GP+L N+N  ME AE ++    +V  
Sbjct: 603  VKRLRIGSQNLAVAASDVRAVSGSGGWLEDTMPAGPRLFNRNQ-MEIAEANATEKSNV-- 659

Query: 2382 CPTNSPNVGNEQASVASTSTIASLPAILKDIAVNPTMLLNILKLGQQQRLAAEQQ-KSAD 2206
              TN+   GNE     + S  ASLP++LKDI VNPTMLLN+LK+ QQQ+LAAE + KS++
Sbjct: 660  --TNNSGSGNECTPTVNNSNDASLPSLLKDIVVNPTMLLNLLKMSQQQQLAAELKLKSSE 717

Query: 2205 PATIAIHXXXXXXXXXXXPLVNNASSMASKILQIPAGTPAVPSQIASISPQDELNKIRMK 2026
            P   AI            PL+N A    S ILQ  AGTP+  S + ++  QD+L K+RMK
Sbjct: 718  PEKNAICPTSLNPCQGSSPLIN-APVATSGILQQSAGTPSA-SPVVAVGRQDDLGKVRMK 775

Query: 2025 PRDPRRVLHGSTLQKSGSMGHDQFKNIVPPSSITRANKDNPNGQKQEGQADKISALSQSV 1846
            PRDPRRVLHG++LQK GS+G+DQ K +VP +S T  ++D PNG KQEGQ D   A SQ++
Sbjct: 776  PRDPRRVLHGNSLQKVGSLGNDQLKGVVPTASNTEGSRDIPNGHKQEGQGDSKLASSQTI 835

Query: 1845 APPDITRQFTKNLKNIADLMSVSQASTKPTIVSQNLSTQSVPVKSQRGDVRASVSNSEEQ 1666
             P DI RQFT NLKNIAD+MSV    T     S N S++ V             S+S + 
Sbjct: 836  LP-DIGRQFTNNLKNIADIMSVPSPPTS----SPNSSSKPVG------------SSSMDS 878

Query: 1665 QSGTISAPDVAVAGSSRSPSTWGDVEHLFEGYDDHQKXXXXXXXXXXXXEQKKMFAARKX 1486
            +  T +   V +A SSRS   WGD+EHLF+ YDD QK            EQKKMFAARK 
Sbjct: 879  KPVTTAFQAVDMAASSRSQGAWGDLEHLFDSYDDKQKAAIQRERARRIEEQKKMFAARKL 938

Query: 1485 XXXXXXXXXXLNSAKFVEVDPVHDEILRKKEEQDREKPQRHLYRLAHMGMWTKLRPGIWN 1306
                      LNSAKFVEVDPVHDEILRKKEEQDREK QRHL+R  HMGMWTKLRPG+WN
Sbjct: 939  CLVLDLDHTLLNSAKFVEVDPVHDEILRKKEEQDREKAQRHLFRFPHMGMWTKLRPGVWN 998

Query: 1305 FLEKASKLYELHLYTMGNKLYATEMAKLLDPNGALFSGRVISKGDDGDLVDGDERVPKSK 1126
            FLEKAS+LYELHLYTMGNKLYATEMAK+LDP G LF+GRVIS+GDDGD +DGD+RVPKSK
Sbjct: 999  FLEKASELYELHLYTMGNKLYATEMAKVLDPKGVLFAGRVISRGDDGDPLDGDDRVPKSK 1058

Query: 1125 DLEGVLGMESAVVIIDDSVKVWPHNKLNLIVVERYIYFPCSRRQFSLPGLSLLEIDHDER 946
            DLEGVLGMES VVIIDDS++VWPHNK+NLIVVERY YFPCSRRQF L G SLLEIDHDER
Sbjct: 1059 DLEGVLGMESGVVIIDDSIRVWPHNKMNLIVVERYTYFPCSRRQFGLLGPSLLEIDHDER 1118

Query: 945  AEDGTLASSLAVIERIHQNFFSHQLLDEVDVRNILASEQQKILAGCRIVFSRVFPVDEVN 766
             EDGTLASSL VI+RIHQ+FFS+  LD+VDVR IL++EQQKILAGCRIVFSRVFPV E N
Sbjct: 1119 PEDGTLASSLGVIQRIHQSFFSNPELDQVDVRTILSAEQQKILAGCRIVFSRVFPVGEAN 1178

Query: 765  PHLNHYWQTAEQFGAVCTNQIDDQVTHVVALSLGTDKVNWALSTGRFVVHPGWLEASALL 586
            PHL+  WQTAEQFGA CTNQID+QVTHVVA SLGTDKVNWALSTGRFVVHPGW+EASALL
Sbjct: 1179 PHLHPLWQTAEQFGAQCTNQIDEQVTHVVANSLGTDKVNWALSTGRFVVHPGWVEASALL 1238

Query: 585  YRRANEQDFAIKP 547
            YRRA EQDFAIKP
Sbjct: 1239 YRRATEQDFAIKP 1251