BLASTX nr result
ID: Zingiber25_contig00047280
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00047280
(285 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indi... 122 5e-26
dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica G... 122 5e-26
dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare] 121 8e-26
gb|EMT05859.1| Pentatricopeptide repeat-containing protein [Aegi... 120 2e-25
ref|XP_006646705.1| PREDICTED: pentatricopeptide repeat-containi... 119 4e-25
ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 119 4e-25
ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containi... 119 4e-25
ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containi... 119 5e-25
ref|XP_004971330.1| PREDICTED: pentatricopeptide repeat-containi... 118 7e-25
ref|XP_004489557.1| PREDICTED: pentatricopeptide repeat-containi... 118 9e-25
ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [S... 118 9e-25
gb|EMJ27445.1| hypothetical protein PRUPE_ppa017671mg [Prunus pe... 117 1e-24
ref|XP_002521822.1| pentatricopeptide repeat-containing protein,... 117 2e-24
tpg|DAA55756.1| TPA: putative pentatricopeptide repeat family pr... 115 5e-24
ref|NP_001266463.1| Emp5 protein [Zea mays] gi|409032180|gb|AFV0... 115 5e-24
emb|CBI39303.3| unnamed protein product [Vitis vinifera] 115 8e-24
ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containi... 115 8e-24
ref|XP_004293115.1| PREDICTED: pentatricopeptide repeat-containi... 114 2e-23
ref|XP_006431171.1| hypothetical protein CICLE_v10011189mg [Citr... 110 2e-22
ref|XP_006348896.1| PREDICTED: pentatricopeptide repeat-containi... 110 3e-22
>gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
Length = 785
Score = 122 bits (306), Expect = 5e-26
Identities = 54/72 (75%), Positives = 60/72 (83%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
+N HSEKLAVA GM+HLP API VMKNLRVC DCH++MK+ S SE REI+LRDP RFHH
Sbjct: 714 MNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHH 773
Query: 225 FRDGCCSCGDYW 260
FRDG CSC DYW
Sbjct: 774 FRDGSCSCADYW 785
>dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
gi|125573391|gb|EAZ14906.1| hypothetical protein
OsJ_04836 [Oryza sativa Japonica Group]
Length = 785
Score = 122 bits (306), Expect = 5e-26
Identities = 54/72 (75%), Positives = 60/72 (83%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
+N HSEKLAVA GM+HLP API VMKNLRVC DCH++MK+ S SE REI+LRDP RFHH
Sbjct: 714 MNCHSEKLAVALGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSENREIILRDPIRFHH 773
Query: 225 FRDGCCSCGDYW 260
FRDG CSC DYW
Sbjct: 774 FRDGSCSCADYW 785
>dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 796
Score = 121 bits (304), Expect = 8e-26
Identities = 54/75 (72%), Positives = 62/75 (82%)
Frame = +3
Query: 36 EAFVNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFR 215
++++N HSEKLAVA G++HLP API VMKNLRVC DCH +MK+ S SEKREIVLRD R
Sbjct: 722 QSWMNWHSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCHLTMKLISKSEKREIVLRDAIR 781
Query: 216 FHHFRDGCCSCGDYW 260
FHHFRDG CSC DYW
Sbjct: 782 FHHFRDGSCSCADYW 796
>gb|EMT05859.1| Pentatricopeptide repeat-containing protein [Aegilops tauschii]
Length = 701
Score = 120 bits (301), Expect = 2e-25
Identities = 53/83 (63%), Positives = 65/83 (78%)
Frame = +3
Query: 36 EAFVNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFR 215
++++N HSEKLAVA G++HLP API VMKNLRVC DCH +MK+ S SE REI+LRD R
Sbjct: 558 QSWMNWHSEKLAVALGLIHLPQSAPIRVMKNLRVCRDCHLAMKLISKSENREIILRDAIR 617
Query: 216 FHHFRDGCCSCGDYW*STNNQVL 284
FHHFRDG CSC DYW ++ +L
Sbjct: 618 FHHFRDGSCSCADYWHRADSPIL 640
>ref|XP_006646705.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Oryza brachyantha]
Length = 787
Score = 119 bits (298), Expect = 4e-25
Identities = 53/72 (73%), Positives = 59/72 (81%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
+N HSEKLAVA G++HLP API VMKNLRVC DCH +MK+ S SE REI+LRDP RFHH
Sbjct: 716 MNCHSEKLAVALGIIHLPQSAPIKVMKNLRVCRDCHLTMKLISKSENREIILRDPIRFHH 775
Query: 225 FRDGCCSCGDYW 260
FRDG CSC DYW
Sbjct: 776 FRDGSCSCTDYW 787
>ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g13880-like [Cucumis sativus]
Length = 839
Score = 119 bits (298), Expect = 4e-25
Identities = 49/72 (68%), Positives = 63/72 (87%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
VN+HSEKLAVAFG+++L AP+ VMKNLR+C+DCH +MK+FS+ EKRE+++RD RFHH
Sbjct: 768 VNYHSEKLAVAFGVLYLSESAPVRVMKNLRICLDCHMTMKLFSIVEKRELIVRDSVRFHH 827
Query: 225 FRDGCCSCGDYW 260
F+DG CSCGDYW
Sbjct: 828 FKDGSCSCGDYW 839
>ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Cucumis sativus]
Length = 746
Score = 119 bits (298), Expect = 4e-25
Identities = 49/72 (68%), Positives = 63/72 (87%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
VN+HSEKLAVAFG+++L AP+ VMKNLR+C+DCH +MK+FS+ EKRE+++RD RFHH
Sbjct: 675 VNYHSEKLAVAFGVLYLSESAPVRVMKNLRICLDCHMTMKLFSIVEKRELIVRDSVRFHH 734
Query: 225 FRDGCCSCGDYW 260
F+DG CSCGDYW
Sbjct: 735 FKDGSCSCGDYW 746
>ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Brachypodium distachyon]
Length = 796
Score = 119 bits (297), Expect = 5e-25
Identities = 53/73 (72%), Positives = 61/73 (83%)
Frame = +3
Query: 42 FVNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFH 221
++N HSEKLAVA G++HLP API VMKNLRVC DCH++MK+ S SE REI+LRD RFH
Sbjct: 724 WMNCHSEKLAVALGIIHLPQSAPIRVMKNLRVCRDCHSTMKLISKSECREIILRDVIRFH 783
Query: 222 HFRDGCCSCGDYW 260
HFRDG CSCGDYW
Sbjct: 784 HFRDGSCSCGDYW 796
>ref|XP_004971330.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Setaria italica]
Length = 791
Score = 118 bits (296), Expect = 7e-25
Identities = 52/72 (72%), Positives = 59/72 (81%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
V HSEKLAVAFGM+HLP AP+ VMKNLRVC +CH++MK+ S SE REI+LRD RFHH
Sbjct: 720 VGCHSEKLAVAFGMIHLPQSAPVRVMKNLRVCRECHSTMKLISRSENREIILRDAIRFHH 779
Query: 225 FRDGCCSCGDYW 260
FR G CSCGDYW
Sbjct: 780 FRGGACSCGDYW 791
>ref|XP_004489557.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like isoform X1 [Cicer arietinum]
gi|502091468|ref|XP_004489558.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g13880-like isoform X2 [Cicer arietinum]
gi|502091472|ref|XP_004489559.1| PREDICTED:
pentatricopeptide repeat-containing protein
At3g13880-like isoform X3 [Cicer arietinum]
Length = 742
Score = 118 bits (295), Expect = 9e-25
Identities = 51/72 (70%), Positives = 59/72 (81%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
+NHHSEKLAV FG++ LP AP+ VMKNLRVC DCHT+MK+ S EKREI+LRD RFHH
Sbjct: 671 MNHHSEKLAVTFGIISLPESAPVRVMKNLRVCSDCHTTMKLISKVEKREIILRDAIRFHH 730
Query: 225 FRDGCCSCGDYW 260
F+DG CSC DYW
Sbjct: 731 FKDGLCSCKDYW 742
>ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
gi|241928942|gb|EES02087.1| hypothetical protein
SORBIDRAFT_03g046490 [Sorghum bicolor]
Length = 785
Score = 118 bits (295), Expect = 9e-25
Identities = 53/72 (73%), Positives = 59/72 (81%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
V HSEK+AVAFGM+HLP API VMKNLRVC DCH++MK+ S SE REI+LRD RFHH
Sbjct: 714 VGCHSEKIAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMKLISGSENREIILRDGIRFHH 773
Query: 225 FRDGCCSCGDYW 260
FR G CSCGDYW
Sbjct: 774 FRGGSCSCGDYW 785
>gb|EMJ27445.1| hypothetical protein PRUPE_ppa017671mg [Prunus persica]
Length = 752
Score = 117 bits (294), Expect = 1e-24
Identities = 52/72 (72%), Positives = 58/72 (80%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
V +HSE LAV FG++ LP AP+ VMKNLRVC DCHT+MK FS EKREI+LRDP RFHH
Sbjct: 681 VYYHSENLAVTFGIISLPQSAPVRVMKNLRVCSDCHTTMKFFSEVEKREIILRDPIRFHH 740
Query: 225 FRDGCCSCGDYW 260
FRDG CSC DYW
Sbjct: 741 FRDGACSCRDYW 752
>ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223539035|gb|EEF40632.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 793
Score = 117 bits (293), Expect = 2e-24
Identities = 50/72 (69%), Positives = 60/72 (83%)
Frame = +3
Query: 45 VNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHH 224
VNHHSEKLAV+FG++ LP AP+ VMKNLRVC DCH +MK+ S+ EKREI+LRD RFHH
Sbjct: 722 VNHHSEKLAVSFGIVSLPPSAPVKVMKNLRVCHDCHATMKLISVVEKREIILRDSLRFHH 781
Query: 225 FRDGCCSCGDYW 260
F++G CSC DYW
Sbjct: 782 FKEGSCSCNDYW 793
>tpg|DAA55756.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
Length = 465
Score = 115 bits (289), Expect = 5e-24
Identities = 51/69 (73%), Positives = 58/69 (84%)
Frame = +3
Query: 54 HSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHHFRD 233
HSEKLAVAFGM+HLP API VMKNLRVC DCH++M++ S SE+REI+LRD RFH FRD
Sbjct: 397 HSEKLAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMELISKSERREIILRDAIRFHRFRD 456
Query: 234 GCCSCGDYW 260
G CSCG YW
Sbjct: 457 GSCSCGGYW 465
>ref|NP_001266463.1| Emp5 protein [Zea mays] gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
gi|414878626|tpg|DAA55757.1| TPA: putative
pentatricopeptide repeat family protein [Zea mays]
Length = 776
Score = 115 bits (289), Expect = 5e-24
Identities = 51/69 (73%), Positives = 58/69 (84%)
Frame = +3
Query: 54 HSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHHFRD 233
HSEKLAVAFGM+HLP API VMKNLRVC DCH++M++ S SE+REI+LRD RFH FRD
Sbjct: 708 HSEKLAVAFGMIHLPQSAPIRVMKNLRVCRDCHSTMELISKSERREIILRDAIRFHRFRD 767
Query: 234 GCCSCGDYW 260
G CSCG YW
Sbjct: 768 GSCSCGGYW 776
>emb|CBI39303.3| unnamed protein product [Vitis vinifera]
Length = 723
Score = 115 bits (287), Expect = 8e-24
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = +3
Query: 21 PNNQCEAFVNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVL 200
P ++ + V++HSEKLAV FG++ LP AP+ VMKNLR C CH +MK+FS E REI+L
Sbjct: 644 PKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIIL 703
Query: 201 RDPFRFHHFRDGCCSCGDYW 260
RDP RFH FRDG CSCGDYW
Sbjct: 704 RDPIRFHRFRDGSCSCGDYW 723
>ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g13880-like [Vitis vinifera]
Length = 802
Score = 115 bits (287), Expect = 8e-24
Identities = 50/80 (62%), Positives = 61/80 (76%)
Frame = +3
Query: 21 PNNQCEAFVNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVL 200
P ++ + V++HSEKLAV FG++ LP AP+ VMKNLR C CH +MK+FS E REI+L
Sbjct: 723 PKHKDNSMVSYHSEKLAVTFGIISLPRSAPVRVMKNLRSCWHCHETMKLFSRLENREIIL 782
Query: 201 RDPFRFHHFRDGCCSCGDYW 260
RDP RFH FRDG CSCGDYW
Sbjct: 783 RDPIRFHRFRDGSCSCGDYW 802
>ref|XP_004293115.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22070-like
[Fragaria vesca subsp. vesca]
Length = 870
Score = 114 bits (284), Expect = 2e-23
Identities = 48/70 (68%), Positives = 57/70 (81%)
Frame = +3
Query: 51 HHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHHFR 230
HHSEKLAVAFG++ LPA PI VMKNLRVC DCH +K+ S+ RE+++RD RFHHF+
Sbjct: 801 HHSEKLAVAFGLLSLPAWMPIYVMKNLRVCHDCHLVIKLISVVTSRELIVRDGHRFHHFK 860
Query: 231 DGCCSCGDYW 260
DGCCSCGDYW
Sbjct: 861 DGCCSCGDYW 870
>ref|XP_006431171.1| hypothetical protein CICLE_v10011189mg [Citrus clementina]
gi|557533228|gb|ESR44411.1| hypothetical protein
CICLE_v10011189mg [Citrus clementina]
Length = 709
Score = 110 bits (275), Expect = 2e-22
Identities = 46/81 (56%), Positives = 62/81 (76%)
Frame = +3
Query: 18 VPNNQCEAFVNHHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIV 197
V + Q E ++NHHSEKLA+A+ +M P API V+KNLR+C DCH+++K+ S KR+I+
Sbjct: 629 VEDEQKEDYLNHHSEKLAIAYALMETPPTAPILVIKNLRMCDDCHSAVKLISKLTKRDII 688
Query: 198 LRDPFRFHHFRDGCCSCGDYW 260
+RD RFH F+DGCCSC DYW
Sbjct: 689 VRDTNRFHRFQDGCCSCTDYW 709
>ref|XP_006348896.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g41080-like [Solanum tuberosum]
Length = 658
Score = 110 bits (274), Expect = 3e-22
Identities = 45/70 (64%), Positives = 56/70 (80%)
Frame = +3
Query: 51 HHSEKLAVAFGMMHLPALAPICVMKNLRVCMDCHTSMKMFSMSEKREIVLRDPFRFHHFR 230
HHSEKLA+AF +M+ P PI +MKNLR+C DCH ++K S +KREI++RD RFHHF+
Sbjct: 589 HHSEKLAIAFALMNTPEGFPIRIMKNLRICGDCHMAIKYISQMKKREIIVRDSSRFHHFK 648
Query: 231 DGCCSCGDYW 260
DGCCSCGDYW
Sbjct: 649 DGCCSCGDYW 658