BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00047176
         (291 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004978029.1| PREDICTED: pentatricopeptide repeat-containi...   115   6e-24
ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containi...   113   3e-23
dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]    109   3e-22
gb|EMT09642.1| hypothetical protein F775_08996 [Aegilops tauschii]    109   4e-22
ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [S...   108   7e-22
gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]        107   1e-21
tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea m...   104   1e-20
gb|EOY30252.1| Pentatricopeptide repeat superfamily protein, put...   103   2e-20
ref|XP_006653453.1| PREDICTED: pentatricopeptide repeat-containi...   102   7e-20
ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group] g...   101   1e-19
gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japo...   101   1e-19
gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indi...   100   2e-19
emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]          100   2e-19
ref|XP_006452806.1| hypothetical protein CICLE_v10007804mg [Citr...   100   3e-19
ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containi...   100   3e-19
ref|XP_006474728.1| PREDICTED: pentatricopeptide repeat-containi...   100   3e-19
ref|XP_006381622.1| pentatricopeptide repeat-containing family p...   100   3e-19
ref|XP_002326124.1| predicted protein [Populus trichocarpa]           100   3e-19
dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]                       99   7e-19
ref|NP_178657.1| pentatricopeptide repeat-containing protein [Ar...    99   7e-19

>ref|XP_004978029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Setaria italica]
          Length = 536

 Score =  115 bits (288), Expect = 6e-24
 Identities = 51/81 (62%), Positives = 66/81 (81%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           +LL+MEE+ C PDKYTYTILIIGHCMKGR+ EAV +F KMV++GC PD ITVD F+ CLL
Sbjct: 438 ILLDMEEKGCHPDKYTYTILIIGHCMKGRISEAVTLFHKMVETGCHPDNITVDSFISCLL 497

Query: 110 KSGFPHEINKIKSFISGRSSN 48
           K+G P+E+++I    SG +S+
Sbjct: 498 KAGMPNEVDRIMLIASGHASS 518


>ref|XP_003581270.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Brachypodium distachyon]
          Length = 560

 Score =  113 bits (282), Expect = 3e-23
 Identities = 52/86 (60%), Positives = 67/86 (77%), Gaps = 1/86 (1%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           +L+EME + C PDKYTYTILIIGHCMKGR+ EA+  F KMVD+GC+PD ITV+ F+ CLL
Sbjct: 462 ILMEMEGKGCRPDKYTYTILIIGHCMKGRISEAITFFNKMVDTGCSPDSITVNSFIGCLL 521

Query: 110 KSGFPHEINKIKSFISG-RSSNFEIP 36
           K+G P E+++I    SG  SS+ E+P
Sbjct: 522 KAGMPSEVDRIMKIASGSTSSSQEVP 547


>dbj|BAK06078.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 566

 Score =  109 bits (273), Expect = 3e-22
 Identities = 49/81 (60%), Positives = 63/81 (77%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           +L+EMEE+ C PDKYTYTILIIGHCMKGR+ EAV  F KMV++GC+PD I V+ F+ CLL
Sbjct: 468 ILIEMEEKGCRPDKYTYTILIIGHCMKGRIAEAVTFFHKMVETGCSPDSIVVNSFISCLL 527

Query: 110 KSGFPHEINKIKSFISGRSSN 48
           KSG P E++ I    +G +S+
Sbjct: 528 KSGMPGEVDHIMRIAAGGASS 548


>gb|EMT09642.1| hypothetical protein F775_08996 [Aegilops tauschii]
          Length = 400

 Score =  109 bits (272), Expect = 4e-22
 Identities = 48/81 (59%), Positives = 63/81 (77%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           +L+EMEE+ C PDKYTYTILIIGHCMKGR+ EA+  F KMV++GC+PD I V+ F+ CLL
Sbjct: 302 ILMEMEEKGCRPDKYTYTILIIGHCMKGRIAEAITFFHKMVETGCSPDSIVVNSFISCLL 361

Query: 110 KSGFPHEINKIKSFISGRSSN 48
           KSG P E++ I    +G +S+
Sbjct: 362 KSGMPGEVDHIMRIAAGGASS 382


>ref|XP_002447917.1| hypothetical protein SORBIDRAFT_06g017980 [Sorghum bicolor]
           gi|241939100|gb|EES12245.1| hypothetical protein
           SORBIDRAFT_06g017980 [Sorghum bicolor]
          Length = 550

 Score =  108 bits (270), Expect = 7e-22
 Identities = 46/80 (57%), Positives = 65/80 (81%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           ++ +MEE+ C PDKYTYTILIIGHCMKGR+ EA+ +F KMV++GC PD+ITV+ F+ C+L
Sbjct: 452 IVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVETGCRPDKITVNSFISCVL 511

Query: 110 KSGFPHEINKIKSFISGRSS 51
           K+G P+E+++I    SG +S
Sbjct: 512 KAGMPNEVDQIMLIASGHAS 531


>gb|AFW58380.1| hypothetical protein ZEAMMB73_073366 [Zea mays]
          Length = 414

 Score =  107 bits (268), Expect = 1e-21
 Identities = 46/80 (57%), Positives = 64/80 (80%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           ++ +MEE+ C PDKYTYTILIIGHCMKGR+ EAV +F KMV++GC PD IT++ F+ C+L
Sbjct: 316 IVTDMEEKGCHPDKYTYTILIIGHCMKGRIPEAVTLFHKMVETGCRPDNITINSFISCVL 375

Query: 110 KSGFPHEINKIKSFISGRSS 51
           K+G P+E+++I    SG +S
Sbjct: 376 KAGMPNEVHQIMLIASGHAS 395


>tpg|DAA37606.1| TPA: hypothetical protein ZEAMMB73_100135 [Zea mays]
          Length = 547

 Score =  104 bits (260), Expect = 1e-20
 Identities = 45/77 (58%), Positives = 62/77 (80%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           ++ +M+E+ C PDKYTYTILIIGHCMKGR+ EA+ +F KMV++GC PD ITV+ FV C+L
Sbjct: 449 IVTDMKEKGCHPDKYTYTILIIGHCMKGRIPEAITLFHKMVEAGCRPDNITVNSFVSCVL 508

Query: 110 KSGFPHEINKIKSFISG 60
           K+G P+E+++I    SG
Sbjct: 509 KAGMPNEVDQIMLIASG 525


>gb|EOY30252.1| Pentatricopeptide repeat superfamily protein, putative [Theobroma
           cacao]
          Length = 592

 Score =  103 bits (257), Expect = 2e-20
 Identities = 45/76 (59%), Positives = 58/76 (76%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           ++ EMEE++C PDK T+TILIIGHCMKGRMFEA+ IF KM+  GCTPD +TV+  + CLL
Sbjct: 491 IVAEMEEKQCHPDKVTFTILIIGHCMKGRMFEAISIFNKMLSVGCTPDDVTVNSLISCLL 550

Query: 110 KSGFPHEINKIKSFIS 63
           K+G P E ++I    S
Sbjct: 551 KAGMPSEASRITKMAS 566


>ref|XP_006653453.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Oryza brachyantha]
          Length = 516

 Score =  102 bits (253), Expect = 7e-20
 Identities = 46/82 (56%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
 Frame = -2

Query: 278 MEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLLKSGF 99
           MEE+ C PDKYTYTILIIG+CMK R+ EA+ IF +MV++GC+PD ITV+ F+ CLLK+G 
Sbjct: 422 MEEKGCRPDKYTYTILIIGYCMKSRISEAIMIFHQMVEAGCSPDNITVNCFISCLLKAGM 481

Query: 98  PHEINKIKSFISGRSSNF-EIP 36
           P+E++ +    SG  S+  E+P
Sbjct: 482 PNEVDHVMRLASGGVSSIQEVP 503


>ref|NP_001052907.1| Os04g0446100 [Oryza sativa Japonica Group]
           gi|38344550|emb|CAD40961.2| OSJNBa0027P08.18 [Oryza
           sativa Japonica Group] gi|113564478|dbj|BAF14821.1|
           Os04g0446100 [Oryza sativa Japonica Group]
          Length = 583

 Score =  101 bits (251), Expect = 1e-19
 Identities = 45/82 (54%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
 Frame = -2

Query: 278 MEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLLKSGF 99
           MEE+ C PDKYTYTILIIG+CMK R+ EA+  F +MV++GC+PD ITV+ F+ CLLK+G 
Sbjct: 489 MEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGM 548

Query: 98  PHEINKIKSFISGRSSNF-EIP 36
           P+E++ +    SG +S+  E+P
Sbjct: 549 PNEVDHVMRLASGGASSIQEVP 570


>gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
          Length = 414

 Score =  101 bits (251), Expect = 1e-19
 Identities = 45/82 (54%), Positives = 63/82 (76%), Gaps = 1/82 (1%)
 Frame = -2

Query: 278 MEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLLKSGF 99
           MEE+ C PDKYTYTILIIG+CMK R+ EA+  F +MV++GC+PD ITV+ F+ CLLK+G 
Sbjct: 320 MEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGM 379

Query: 98  PHEINKIKSFISGRSSNF-EIP 36
           P+E++ +    SG +S+  E+P
Sbjct: 380 PNEVDHVMRLASGGASSIQEVP 401


>gb|EAY94290.1| hypothetical protein OsI_16061 [Oryza sativa Indica Group]
          Length = 586

 Score =  100 bits (250), Expect = 2e-19
 Identities = 43/79 (54%), Positives = 61/79 (77%)
 Frame = -2

Query: 278 MEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLLKSGF 99
           MEE+ C PDKYTYTILIIG+CMK R+ EA+  F +MV++GC+PD ITV+ F+ CLLK+G 
Sbjct: 492 MEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGM 551

Query: 98  PHEINKIKSFISGRSSNFE 42
           P+E++ +    SG +S+ +
Sbjct: 552 PNEVDHVMRLASGGASSIQ 570


>emb|CAH67244.1| OSIGBa0140O07.12 [Oryza sativa Indica Group]
          Length = 581

 Score =  100 bits (250), Expect = 2e-19
 Identities = 43/79 (54%), Positives = 61/79 (77%)
 Frame = -2

Query: 278 MEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLLKSGF 99
           MEE+ C PDKYTYTILIIG+CMK R+ EA+  F +MV++GC+PD ITV+ F+ CLLK+G 
Sbjct: 487 MEEKGCRPDKYTYTILIIGYCMKSRISEAIMFFHEMVEAGCSPDSITVNCFISCLLKAGM 546

Query: 98  PHEINKIKSFISGRSSNFE 42
           P+E++ +    SG +S+ +
Sbjct: 547 PNEVDHVMRLASGGASSIQ 565


>ref|XP_006452806.1| hypothetical protein CICLE_v10007804mg [Citrus clementina]
           gi|557556032|gb|ESR66046.1| hypothetical protein
           CICLE_v10007804mg [Citrus clementina]
          Length = 595

 Score =  100 bits (248), Expect = 3e-19
 Identities = 47/85 (55%), Positives = 59/85 (69%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           ++ EMEE+RC PDK T+TILIIGHCMKGRM EA+ IF KM+  GC PD ITV+  + CLL
Sbjct: 494 IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLRIGCAPDDITVNSLISCLL 553

Query: 110 KSGFPHEINKIKSFISGRSSNFEIP 36
           K G P+E  +I    S    N ++P
Sbjct: 554 KGGMPNEAFRIMQRAS-EDQNLQLP 577


>ref|XP_002278014.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like [Vitis vinifera]
          Length = 641

 Score =  100 bits (248), Expect = 3e-19
 Identities = 44/76 (57%), Positives = 56/76 (73%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           +L EMEE+RC PDK TYTILIIGHCMKGR+ EA+ IF +M+ +GC PD IT+   + CLL
Sbjct: 470 ILAEMEEKRCKPDKITYTILIIGHCMKGRLSEAISIFNRMLGTGCAPDSITMTSLISCLL 529

Query: 110 KSGFPHEINKIKSFIS 63
           K+G P+E  +I    S
Sbjct: 530 KAGMPNEAYRIMQIAS 545


>ref|XP_006474728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g06000-like isoform X1 [Citrus sinensis]
           gi|568841566|ref|XP_006474729.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At2g06000-like isoform X2 [Citrus sinensis]
          Length = 595

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 47/85 (55%), Positives = 59/85 (69%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           ++ EMEE+RC PDK T+TILIIGHCMKGRM EA+ IF KM+  GC PD ITV+  + CLL
Sbjct: 494 IVAEMEEKRCKPDKVTFTILIIGHCMKGRMVEAISIFNKMLTIGCAPDDITVNSLISCLL 553

Query: 110 KSGFPHEINKIKSFISGRSSNFEIP 36
           K G P+E  +I    S    N ++P
Sbjct: 554 KGGMPNEAFRIMQRAS-EDLNLQLP 577


>ref|XP_006381622.1| pentatricopeptide repeat-containing family protein [Populus
           trichocarpa] gi|550336330|gb|ERP59419.1|
           pentatricopeptide repeat-containing family protein
           [Populus trichocarpa]
          Length = 511

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 43/72 (59%), Positives = 57/72 (79%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           +L EMEE+RC PDK T+TILIIGHC+KGRMFEA+ IF +M+ + C PD ITV+  + CLL
Sbjct: 410 ILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLL 469

Query: 110 KSGFPHEINKIK 75
           K+G P+E  +I+
Sbjct: 470 KAGMPNEAYRIR 481


>ref|XP_002326124.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score = 99.8 bits (247), Expect = 3e-19
 Identities = 43/72 (59%), Positives = 57/72 (79%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           +L EMEE+RC PDK T+TILIIGHC+KGRMFEA+ IF +M+ + C PD ITV+  + CLL
Sbjct: 411 ILKEMEEKRCDPDKVTFTILIIGHCVKGRMFEAINIFNRMLATRCAPDNITVNSLISCLL 470

Query: 110 KSGFPHEINKIK 75
           K+G P+E  +I+
Sbjct: 471 KAGMPNEAYRIR 482


>dbj|BAH19478.1| AT2G06000 [Arabidopsis thaliana]
          Length = 536

 Score = 98.6 bits (244), Expect = 7e-19
 Identities = 46/85 (54%), Positives = 58/85 (68%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           ++ EME+++C PDK T+TILIIGHCMKGRMFEAV IF KMV  GC+PD+ITV   + CLL
Sbjct: 439 IVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLL 498

Query: 110 KSGFPHEINKIKSFISGRSSNFEIP 36
           K+G   E   +        SN  +P
Sbjct: 499 KAGMAKEAYHLNQIARKGQSNNVVP 523


>ref|NP_178657.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|42570711|ref|NP_973429.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|75216767|sp|Q9ZUE9.1|PP149_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g06000 gi|4006835|gb|AAC95177.1| hypothetical protein
           [Arabidopsis thaliana] gi|110736272|dbj|BAF00106.1|
           hypothetical protein [Arabidopsis thaliana]
           gi|330250896|gb|AEC05990.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
           gi|330250897|gb|AEC05991.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 536

 Score = 98.6 bits (244), Expect = 7e-19
 Identities = 46/85 (54%), Positives = 58/85 (68%)
 Frame = -2

Query: 290 VLLEMEERRCTPDKYTYTILIIGHCMKGRMFEAVEIFQKMVDSGCTPDRITVDFFVPCLL 111
           ++ EME+++C PDK T+TILIIGHCMKGRMFEAV IF KMV  GC+PD+ITV   + CLL
Sbjct: 439 IVEEMEKKKCKPDKITFTILIIGHCMKGRMFEAVSIFHKMVAIGCSPDKITVSSLLSCLL 498

Query: 110 KSGFPHEINKIKSFISGRSSNFEIP 36
           K+G   E   +        SN  +P
Sbjct: 499 KAGMAKEAYHLNQIARKGQSNNVVP 523