BLASTX nr result
ID: Zingiber25_contig00047075
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00047075
(275 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ADB85430.1| putative retrotransposon protein [Phyllostachys e... 156 3e-36
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 154 9e-36
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 154 1e-35
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 154 1e-35
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 154 2e-35
dbj|BAA22288.1| polyprotein [Oryza australiensis] 152 3e-35
gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subc... 151 1e-34
emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group] gi... 150 2e-34
gb|ABA96688.1| retrotransposon protein, putative, Ty1-copia subc... 149 4e-34
gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subc... 146 3e-33
gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group] 146 3e-33
emb|CAD40475.2| OSJNBa0067G20.13 [Oryza sativa Japonica Group] 140 2e-31
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc... 138 9e-31
gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japoni... 136 3e-30
gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subc... 136 3e-30
gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-... 134 2e-29
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 133 3e-29
emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera] 131 1e-28
emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera] 129 4e-28
gb|AAD17357.1| contains similarity to retrovirus-related polypro... 128 7e-28
>gb|ADB85430.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 896
Score = 156 bits (394), Expect = 3e-36
Identities = 74/90 (82%), Positives = 83/90 (92%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQ+TVADSTTEAEYIAASEAAKE VWI FIT LG+VPS + P++
Sbjct: 760 FVFILNGGAVSWKSSKQETVADSTTEAEYIAASEAAKEGVWIRNFITELGMVPSASSPMD 819
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDNNGAIAQAKEPRSHQ++KHILRR+HL
Sbjct: 820 LYCDNNGAIAQAKEPRSHQKSKHILRRYHL 849
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 154 bits (390), Expect = 9e-36
Identities = 73/90 (81%), Positives = 82/90 (91%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
F F +NGGAVSWKS+KQ TVADSTTEAEYIAASEAAKE VWI KFIT LGVVPSI+ P++
Sbjct: 827 FFFCLNGGAVSWKSTKQSTVADSTTEAEYIAASEAAKEVVWIRKFITELGVVPSISGPID 886
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDNNGAIAQAKEP+SHQ++KHI RR+HL
Sbjct: 887 LYCDNNGAIAQAKEPKSHQKSKHIQRRYHL 916
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 154 bits (389), Expect = 1e-35
Identities = 73/90 (81%), Positives = 84/90 (93%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWI KF++ LGV+ S + P++
Sbjct: 1129 FVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMD 1188
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDN+GAIAQAKEPRSHQ++KHILRR+HL
Sbjct: 1189 LYCDNSGAIAQAKEPRSHQKSKHILRRYHL 1218
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 154 bits (389), Expect = 1e-35
Identities = 73/90 (81%), Positives = 84/90 (93%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWI KF++ LGV+ S + P++
Sbjct: 1042 FVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMD 1101
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDN+GAIAQAKEPRSHQ++KHILRR+HL
Sbjct: 1102 LYCDNSGAIAQAKEPRSHQKSKHILRRYHL 1131
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 154 bits (388), Expect = 2e-35
Identities = 73/90 (81%), Positives = 82/90 (91%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQ+TVADSTT+AEYIAASEAAKE VWI FI LGVVPS + P++
Sbjct: 1176 FVFILNGGAVSWKSSKQETVADSTTKAEYIAASEAAKEGVWIRNFIAELGVVPSASSPMD 1235
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDNNGAIAQAKEPRSHQ++KHILRR+HL
Sbjct: 1236 LYCDNNGAIAQAKEPRSHQKSKHILRRYHL 1265
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 152 bits (385), Expect = 3e-35
Identities = 73/90 (81%), Positives = 82/90 (91%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWI KF++ LGV+ S P+
Sbjct: 1180 FVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSELGVMTSTTGPMS 1239
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDN+GAIAQAKEPRSHQ++KHILRR+HL
Sbjct: 1240 LYCDNSGAIAQAKEPRSHQKSKHILRRYHL 1269
>gb|ABG22008.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 932
Score = 151 bits (381), Expect = 1e-34
Identities = 71/90 (78%), Positives = 83/90 (92%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEA WI KF++ LGV+ S + P++
Sbjct: 804 FVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAAWIKKFVSQLGVMTSASSPMD 863
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDN+GAIAQAKEPRSH+++KHILRR+HL
Sbjct: 864 LYCDNSGAIAQAKEPRSHRKSKHILRRYHL 893
>emb|CAE02400.1| OSJNBa0024J22.4 [Oryza sativa Japonica Group]
gi|38347202|emb|CAD40526.2| OSJNBa0023J03.14 [Oryza
sativa Japonica Group] gi|116308930|emb|CAH66059.1|
OSIGBa0125J07.8 [Oryza sativa Indica Group]
gi|116309043|emb|CAH66155.1| OSIGBa0113B06.1 [Oryza
sativa Indica Group]
Length = 704
Score = 150 bits (378), Expect = 2e-34
Identities = 71/90 (78%), Positives = 83/90 (92%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQ+TVADSTTEAEYIAASEAAKE VWI KF++ LGV+ S + P++
Sbjct: 567 FVFCLNGGAVSWKSSKQNTVADSTTEAEYIAASEAAKEVVWIKKFVSQLGVMTSTSRPMD 626
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDN+GAIAQAKEPRSHQ++KHILRR+HL
Sbjct: 627 LYCDNSGAIAQAKEPRSHQKSKHILRRYHL 656
>gb|ABA96688.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 325
Score = 149 bits (376), Expect = 4e-34
Identities = 70/90 (77%), Positives = 83/90 (92%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQD VADSTT+ EYIAASEAAKEAVWI+KF++ LGV+ S + P++
Sbjct: 206 FVFCLNGGAVSWKSSKQDIVADSTTKPEYIAASEAAKEAVWINKFVSQLGVMASASSPMD 265
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDN+GAIAQAKEPRSHQ++KHILRR+HL
Sbjct: 266 LYCDNSGAIAQAKEPRSHQKSKHILRRYHL 295
>gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 146 bits (368), Expect = 3e-33
Identities = 70/90 (77%), Positives = 82/90 (91%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQDTVADSTTEAEYIAASEAAK+AVWI KF++ LGV+ S + P++
Sbjct: 654 FVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKKAVWIKKFVSQLGVMTSASSPMD 713
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
L CDN+GAIAQAKEPRSHQ++KHIL R+HL
Sbjct: 714 LCCDNSGAIAQAKEPRSHQKSKHILWRYHL 743
>gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 657
Score = 146 bits (368), Expect = 3e-33
Identities = 70/90 (77%), Positives = 82/90 (91%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQDTVADSTTEAEYIAASEAAK+AVWI KF++ LGV+ S + P++
Sbjct: 544 FVFCLNGGAVSWKSSKQDTVADSTTEAEYIAASEAAKKAVWIKKFVSQLGVMTSASSPMD 603
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
L CDN+GAIAQAKEPRSHQ++KHIL R+HL
Sbjct: 604 LCCDNSGAIAQAKEPRSHQKSKHILWRYHL 633
>emb|CAD40475.2| OSJNBa0067G20.13 [Oryza sativa Japonica Group]
Length = 462
Score = 140 bits (353), Expect = 2e-31
Identities = 67/90 (74%), Positives = 77/90 (85%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQD VADSTTE EYI ASEAAKEA+WI KF++ LGV+ S PV
Sbjct: 322 FVFCLNGGAVSWKSSKQDIVADSTTEVEYITASEAAKEAIWIKKFVSQLGVMASAPSPVN 381
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYC+N+ AIAQAKEPRSHQ +K+ILRR+HL
Sbjct: 382 LYCNNSDAIAQAKEPRSHQNSKYILRRYHL 411
>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1050
Score = 138 bits (347), Expect = 9e-31
Identities = 68/90 (75%), Positives = 80/90 (88%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQDTV DS TEAEYIAASEAAKEAVWI KF++ LGV+ S + P++
Sbjct: 914 FVFCLNGGAVSWKSSKQDTVVDSITEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMD 973
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDN+GAIAQAKEPRSHQ++ +IL R+HL
Sbjct: 974 LYCDNSGAIAQAKEPRSHQKS-NILWRYHL 1002
>gb|AAO37490.1| putative gag-pol polyprotein [Oryza sativa Japonica Group]
gi|41393192|gb|AAS01915.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 547
Score = 136 bits (343), Expect = 3e-30
Identities = 65/83 (78%), Positives = 77/83 (92%)
Frame = +2
Query: 26 GAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVELYCDNNG 205
GAVSWK+SKQDTVADSTTEAEYIAASEAAKEAVWI KF++ LGV+ S + P++LYCDN+G
Sbjct: 417 GAVSWKNSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSG 476
Query: 206 AIAQAKEPRSHQRTKHILRRFHL 274
AIAQAKEPRSHQ++K+ILR +HL
Sbjct: 477 AIAQAKEPRSHQKSKYILRWYHL 499
>gb|ABF96975.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 562
Score = 136 bits (343), Expect = 3e-30
Identities = 65/83 (78%), Positives = 77/83 (92%)
Frame = +2
Query: 26 GAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVELYCDNNG 205
GAVSWK+SKQDTVADSTTEAEYIAASEAAKEAVWI KF++ LGV+ S + P++LYCDN+G
Sbjct: 432 GAVSWKNSKQDTVADSTTEAEYIAASEAAKEAVWIKKFVSQLGVMTSASSPMDLYCDNSG 491
Query: 206 AIAQAKEPRSHQRTKHILRRFHL 274
AIAQAKEPRSHQ++K+ILR +HL
Sbjct: 492 AIAQAKEPRSHQKSKYILRWYHL 514
>gb|AAX96622.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550175|gb|ABA92972.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 305
Score = 134 bits (336), Expect = 2e-29
Identities = 62/85 (72%), Positives = 76/85 (89%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQDT+A+STT+ EYIAASEAAKEAVWI KF++ LGV+ S + P++
Sbjct: 163 FVFCLNGGAVSWKSSKQDTLANSTTKTEYIAASEAAKEAVWIKKFVSQLGVMTSTSSPMD 222
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHIL 259
LYCDN+GAIAQAKEPRSHQ++ H +
Sbjct: 223 LYCDNSGAIAQAKEPRSHQKSTHFM 247
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 133 bits (334), Expect = 3e-29
Identities = 65/90 (72%), Positives = 77/90 (85%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGGAVSWKSSKQD V DSTTEAEYIAASEA VWI KF++ LGV+ S + ++
Sbjct: 1051 FVFCLNGGAVSWKSSKQDIVVDSTTEAEYIAASEA----VWIKKFVSQLGVMTSASSSMD 1106
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDN+GAIAQAKEPRSHQ++KHILR++HL
Sbjct: 1107 LYCDNSGAIAQAKEPRSHQKSKHILRQYHL 1136
>emb|CAN64055.1| hypothetical protein VITISV_044406 [Vitis vinifera]
Length = 633
Score = 131 bits (329), Expect = 1e-28
Identities = 59/89 (66%), Positives = 73/89 (82%)
Frame = +2
Query: 8 VFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVEL 187
VF + GGA+SW+S KQ VADST EAEY+AASEAAKEAVW+ F+ LGVVPS+ P+ L
Sbjct: 495 VFXLGGGAISWRSIKQTXVADSTMEAEYVAASEAAKEAVWLRNFLLDLGVVPSVQSPITL 554
Query: 188 YCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
YCDN+GA+A +KEPRSH+R KHI R++HL
Sbjct: 555 YCDNSGAVANSKEPRSHKRAKHIERKYHL 583
>emb|CAN65627.1| hypothetical protein VITISV_032735 [Vitis vinifera]
Length = 1285
Score = 129 bits (324), Expect = 4e-28
Identities = 58/89 (65%), Positives = 72/89 (80%)
Frame = +2
Query: 8 VFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVEL 187
VF + GGA+SW+S KQ VAD T EAEY+AASEAAKEAVW+ F+ LGVVPS+ P+ L
Sbjct: 1147 VFVLGGGAISWRSIKQTCVADFTMEAEYVAASEAAKEAVWLRNFLLDLGVVPSVQSPITL 1206
Query: 188 YCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
YCDN+GA+A +KEPRSH+R KHI R++HL
Sbjct: 1207 YCDNSGAVANSKEPRSHKRAKHIXRKYHL 1235
>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] gi|7267382|emb|CAB77943.1| putative transposon
protein [Arabidopsis thaliana]
Length = 769
Score = 128 bits (322), Expect = 7e-28
Identities = 64/90 (71%), Positives = 73/90 (81%)
Frame = +2
Query: 5 FVFSINGGAVSWKSSKQDTVADSTTEAEYIAASEAAKEAVWIHKFIT*LGVVPSIADPVE 184
FVF +NGG VSWKSSKQ TVADS TE +AAS+A KEAVWI KFIT L VVP+I ++
Sbjct: 635 FVFCLNGGVVSWKSSKQSTVADSITE---VAASKAVKEAVWIRKFITELSVVPNIPGLID 691
Query: 185 LYCDNNGAIAQAKEPRSHQRTKHILRRFHL 274
LYCDNNGAIAQ KE RSHQ++KHI RR+HL
Sbjct: 692 LYCDNNGAIAQTKERRSHQKSKHIQRRYHL 721