BLASTX nr result
ID: Zingiber25_contig00046238
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00046238
(363 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera] 125 8e-27
emb|CAN60570.1| hypothetical protein VITISV_000227 [Vitis vinifera] 115 5e-24
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 104 1e-20
gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa] 99 8e-19
emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera] 94 2e-17
gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group] 93 3e-17
dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsi... 93 4e-17
emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group] 93 4e-17
gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subc... 92 5e-17
gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subc... 92 5e-17
gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-... 92 5e-17
emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera] 92 7e-17
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 92 9e-17
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 91 1e-16
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 91 1e-16
gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidop... 91 1e-16
gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subc... 91 2e-16
emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group] 91 2e-16
gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group] 90 3e-16
gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subc... 90 4e-16
>emb|CAN81634.1| hypothetical protein VITISV_034565 [Vitis vinifera]
Length = 595
Score = 125 bits (313), Expect = 8e-27
Identities = 57/82 (69%), Positives = 70/82 (85%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
+FQE IH+ EK RW GAM EE++ LHKNQT DL+E PEG++AIGCKW++KKKEA+S+ E
Sbjct: 163 TFQEAIHNQEKSRWMGAMVEEIQFLHKNQTWDLVEPPEGKRAIGCKWVYKKKEAISKKEG 222
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
KFKARLVAK YSQRKG+DY+E
Sbjct: 223 EKFKARLVAKGYSQRKGVDYDE 244
>emb|CAN60570.1| hypothetical protein VITISV_000227 [Vitis vinifera]
Length = 605
Score = 115 bits (289), Expect = 5e-24
Identities = 51/82 (62%), Positives = 68/82 (82%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
+FQE IHS EK RW GAM EE++SLHKNQT DL++LPEG++ I CKW++KKK+A+S+ +
Sbjct: 267 TFQEAIHSQEKSRWMGAMVEEIQSLHKNQTWDLVKLPEGKREIRCKWVYKKKKAVSKKDG 326
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
KFKARLV K YS +KG+DY++
Sbjct: 327 EKFKARLVEKGYSHKKGVDYDD 348
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 104 bits (259), Expect = 1e-20
Identities = 49/96 (51%), Positives = 68/96 (70%)
Frame = +3
Query: 72 AEQIVDLFDVHYC*SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCK 251
A Q+ + D +++E I SS+ ++W AM +EMESLHKNQT DL+ P G K I CK
Sbjct: 779 ALQVAEEVDTSEPSTYKEAILSSDSEKWFAAMGDEMESLHKNQTWDLVIQPSGRKIITCK 838
Query: 252 WIFKKKEAMSEGEEVKFKARLVAKRYSQRKGIDYEE 359
W+FKKKE +S E VK+KAR+VA+ ++QR+G+DY E
Sbjct: 839 WVFKKKEGISPAEGVKYKARVVARGFNQREGVDYNE 874
>gb|ACS74199.1| putative gag-pol polyprotein [Fragaria x ananassa]
Length = 1297
Score = 98.6 bits (244), Expect = 8e-19
Identities = 42/82 (51%), Positives = 60/82 (73%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
++++ I S E W GAM EEMESLHKN +L+ P+ K +GCKW+F+KKE + E +
Sbjct: 784 TYEDAIESVESAGWIGAMTEEMESLHKNSVWELVPKPKERKLVGCKWVFRKKEGIHEDDA 843
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
+ +KARLVAK YSQ++G+DY+E
Sbjct: 844 ITYKARLVAKGYSQKEGVDYDE 865
>emb|CAN61630.1| hypothetical protein VITISV_003191 [Vitis vinifera]
Length = 1208
Score = 93.6 bits (231), Expect = 2e-17
Identities = 45/97 (46%), Positives = 67/97 (69%)
Frame = +3
Query: 69 LAEQIVDLFDVHYC*SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGC 248
+AE+IVD+ Y QE I+S+E D+W A+ EEM+SL KN+T +L+ P+ K +G
Sbjct: 762 VAEEIVDMEPKTY----QEAINSNEADQWVKAIQEEMDSLRKNETWELVTKPKDRKVVGS 817
Query: 249 KWIFKKKEAMSEGEEVKFKARLVAKRYSQRKGIDYEE 359
KW+FK+K+ E ++KARLVAK +SQ++G+DY E
Sbjct: 818 KWVFKRKQGTLGNEAPRYKARLVAKGFSQKEGVDYNE 854
>gb|AAT44282.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1243
Score = 93.2 bits (230), Expect = 3e-17
Identities = 44/82 (53%), Positives = 60/82 (73%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
++ E I S + +RW AM +EMESL KN T +L++LP+ +K I CKWIFK+KE MS +E
Sbjct: 790 TYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGMSPSDE 849
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
++KARLVAK YSQ GID+ +
Sbjct: 850 ARYKARLVAKGYSQIPGIDFND 871
>dbj|BAB09923.1| copia-like retrotransposable element [Arabidopsis thaliana]
Length = 1342
Score = 92.8 bits (229), Expect = 4e-17
Identities = 41/82 (50%), Positives = 61/82 (74%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
+++E + S E ++W A EEM+S+ KN T D+++ PEG++ IGCKWIFK+K + E
Sbjct: 825 TYEEAMRSPECEKWKQATIEEMDSMKKNDTWDVIDKPEGKRVIGCKWIFKRKAGIPGVEP 884
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
++KARLVAK +SQR+GIDY+E
Sbjct: 885 PRYKARLVAKGFSQREGIDYQE 906
>emb|CAH66122.1| OSIGBa0146N20.7 [Oryza sativa Indica Group]
Length = 1335
Score = 92.8 bits (229), Expect = 4e-17
Identities = 45/96 (46%), Positives = 65/96 (67%)
Frame = +3
Query: 72 AEQIVDLFDVHYC*SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCK 251
AEQ+ + VH +++E + + + W AM EEM+SL KN T +++ LP+ +K I CK
Sbjct: 810 AEQVEN---VHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCK 866
Query: 252 WIFKKKEAMSEGEEVKFKARLVAKRYSQRKGIDYEE 359
WIFK+KEA+S E K+KARLVA+ YSQ G+DY +
Sbjct: 867 WIFKRKEALSLSEPPKYKARLVARGYSQIPGVDYND 902
>gb|ABA98804.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 92.4 bits (228), Expect = 5e-17
Identities = 44/96 (45%), Positives = 64/96 (66%)
Frame = +3
Query: 72 AEQIVDLFDVHYC*SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCK 251
AEQ+ + VH +++E + + + W AM EEM+SL KN T +++ LP+ +K I CK
Sbjct: 808 AEQVEN---VHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCK 864
Query: 252 WIFKKKEAMSEGEEVKFKARLVAKRYSQRKGIDYEE 359
WIFK+KE +S E K+KARLVA+ YSQ G+DY +
Sbjct: 865 WIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYND 900
>gb|ABA98656.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1333
Score = 92.4 bits (228), Expect = 5e-17
Identities = 44/96 (45%), Positives = 64/96 (66%)
Frame = +3
Query: 72 AEQIVDLFDVHYC*SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCK 251
AEQ+ + VH +++E + + + W AM EEM+SL KN T +++ LP+ +K I CK
Sbjct: 808 AEQVEN---VHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCK 864
Query: 252 WIFKKKEAMSEGEEVKFKARLVAKRYSQRKGIDYEE 359
WIFK+KE +S E K+KARLVA+ YSQ G+DY +
Sbjct: 865 WIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYND 900
>gb|AAX92861.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77549942|gb|ABA92739.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1373
Score = 92.4 bits (228), Expect = 5e-17
Identities = 44/96 (45%), Positives = 64/96 (66%)
Frame = +3
Query: 72 AEQIVDLFDVHYC*SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCK 251
AEQ+ + VH +++E + + + W AM EEM+SL KN T +++ LP+ +K I CK
Sbjct: 808 AEQVEN---VHEPATYKEAVRCGDSENWISAMHEEMQSLEKNSTWEVVPLPKKKKTISCK 864
Query: 252 WIFKKKEAMSEGEEVKFKARLVAKRYSQRKGIDYEE 359
WIFK+KE +S E K+KARLVA+ YSQ G+DY +
Sbjct: 865 WIFKRKEGLSSSEPPKYKARLVARGYSQIPGVDYND 900
>emb|CAN65222.1| hypothetical protein VITISV_038665 [Vitis vinifera]
Length = 1562
Score = 92.0 bits (227), Expect = 7e-17
Identities = 41/82 (50%), Positives = 59/82 (71%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
S++E + S + +W +M +EM SL KNQT +L+ LPEG K + CKW+FK K+ +S E
Sbjct: 916 SYKEAMESKDSKKWLSSMDDEMASLRKNQTWELVPLPEGVKPVDCKWLFKIKDGISXDEP 975
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
K+K+RLVAK +SQ++GIDY E
Sbjct: 976 PKYKSRLVAKGFSQKEGIDYNE 997
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 91.7 bits (226), Expect = 9e-17
Identities = 42/82 (51%), Positives = 60/82 (73%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
++ E I S + +RW AM +EMESL KN T +L++LP+ +K I CKWIFK+KE +S +E
Sbjct: 1025 TYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKEGISSSDE 1084
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
++KARL+AK YSQ GID+ +
Sbjct: 1085 ARYKARLIAKGYSQIPGIDFND 1106
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 91.3 bits (225), Expect = 1e-16
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
++ E I S + +RW AM +EMESL KN T + ++LP+ +K I CKWIFK+KE MS +E
Sbjct: 853 TYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDE 912
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
++KARLVAK YSQ GID+ +
Sbjct: 913 ARYKARLVAKGYSQIPGIDFND 934
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 91.3 bits (225), Expect = 1e-16
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
++ E I S + +RW AM +EMESL KN T + ++LP+ +K I CKWIFK+KE MS +E
Sbjct: 853 TYSEAIVSDDCNRWITAMHDEMESLKKNHTWEFVKLPKEKKPIRCKWIFKRKEGMSPSDE 912
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
++KARLVAK YSQ GID+ +
Sbjct: 913 ARYKARLVAKGYSQIPGIDFND 934
>gb|AAD17414.1| copia-like retroelement pol polyprotein [Arabidopsis thaliana]
Length = 1166
Score = 91.3 bits (225), Expect = 1e-16
Identities = 43/82 (52%), Positives = 60/82 (73%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
S++E + SS++ +W AM EEM+S K+ T DL+E PE +K IGCKWIFK K + E+
Sbjct: 735 SYEEALKSSKRKQWENAMKEEMDSHKKSHTWDLIEKPEKQKLIGCKWIFKLKPGIPGVEK 794
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
++KARLVAK +SQ++GIDY E
Sbjct: 795 QRYKARLVAKGFSQQEGIDYNE 816
>gb|ABA97637.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1278
Score = 90.5 bits (223), Expect = 2e-16
Identities = 40/82 (48%), Positives = 59/82 (71%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
++ E + S ++++W AM EEM+SL KN T +L+ LP+ +K + CKWIFK+KE +S E
Sbjct: 808 TYTEAVVSGDREKWISAMQEEMQSLEKNGTWELVHLPKQKKPVRCKWIFKRKEGLSPSEP 867
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
+FKARLVAK +SQ G+DY +
Sbjct: 868 PRFKARLVAKGFSQIVGVDYND 889
>emb|CAD40121.3| OSJNBa0061C06.5 [Oryza sativa Japonica Group]
Length = 621
Score = 90.5 bits (223), Expect = 2e-16
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
++ E I S + +RW AM +EMESL KN T +L++LP+ +K I CKWIFK+KE +S +E
Sbjct: 204 TYSEAIVSDDCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKECISPSDE 263
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
+KARLVAK YSQ GID+ +
Sbjct: 264 AMYKARLVAKGYSQIPGIDFND 285
>gb|AAT44257.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1211
Score = 90.1 bits (222), Expect = 3e-16
Identities = 43/82 (52%), Positives = 59/82 (71%)
Frame = +3
Query: 114 SFQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEE 293
++ E I S +RW AM +EMESL KN T +L++LP+ +K I CKWIFK+K+ MS +E
Sbjct: 697 TYSEAIVSDGCNRWITAMHDEMESLEKNHTWELVKLPKEKKPIRCKWIFKRKKGMSPSDE 756
Query: 294 VKFKARLVAKRYSQRKGIDYEE 359
++KARLVAK YSQ GID+ +
Sbjct: 757 ARYKARLVAKGYSQIPGIDFND 778
>gb|ABA99474.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 983
Score = 89.7 bits (221), Expect = 4e-16
Identities = 42/81 (51%), Positives = 58/81 (71%)
Frame = +3
Query: 117 FQEVIHSSEKDRWTGAMAEEMESLHKNQT*DLMELPEGEKAIGCKWIFKKKEAMSEGEEV 296
+ E I S + +RW M +EMESL KN T +L++LP+ +K+I CKWIFK+KE MS +E
Sbjct: 561 YSEAIVSDDCNRWITTMHDEMESLEKNHTWELVKLPKEKKSIRCKWIFKRKEGMSPSDEA 620
Query: 297 KFKARLVAKRYSQRKGIDYEE 359
++KARLVAK YSQ ID+ +
Sbjct: 621 RYKARLVAKGYSQIPSIDFND 641