BLASTX nr result
ID: Zingiber25_contig00045447
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00045447
(444 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III ... 101 1e-19
ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_... 101 1e-19
ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, I... 98 1e-18
dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare] 98 1e-18
ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp.... 98 1e-18
ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, I... 97 2e-18
gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 k... 97 2e-18
ref|XP_001784402.1| predicted protein [Physcomitrella patens] gi... 96 4e-18
ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III ... 96 6e-18
ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, I... 95 1e-17
ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, ... 95 1e-17
ref|XP_003579926.1| PREDICTED: DNA-directed RNA polymerases I, I... 94 1e-17
ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, part... 93 3e-17
gb|EEE62363.1| hypothetical protein OsJ_17152 [Oryza sativa Japo... 93 3e-17
gb|EOY26301.1| DNA directed RNA polymerase, 7 kDa subunit [Theob... 93 4e-17
ref|NP_001150838.1| DNA-directed RNA polymerases I, II, and III ... 93 4e-17
ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutr... 92 5e-17
gb|EEC78536.1| hypothetical protein OsI_18488 [Oryza sativa Indi... 92 5e-17
gb|ABK21111.1| unknown [Picea sitchensis] 92 5e-17
ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutr... 92 7e-17
>tpg|DAA60457.1| TPA: DNA-directed RNA polymerase I, II, and III polypeptide isoform
1, partial [Zea mays] gi|414884444|tpg|DAA60458.1| TPA:
DNA-directed RNA polymerase I, II, and III polypeptide
isoform 2, partial [Zea mays]
Length = 100
Score = 101 bits (251), Expect = 1e-19
Identities = 41/52 (78%), Positives = 51/52 (98%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP++YLCGDCGAENTLKPGDV+QCR+CG+R+L+KKRTRRI+Q++AR
Sbjct: 49 MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 100
>ref|NP_001151371.1| LOC100285004 [Zea mays] gi|297720059|ref|NP_001172391.1|
Os01g0530366 [Oryza sativa Japonica Group]
gi|297723715|ref|NP_001174221.1| Os05g0151800 [Oryza
sativa Japonica Group] gi|242048352|ref|XP_002461922.1|
hypothetical protein SORBIDRAFT_02g010660 [Sorghum
bicolor] gi|242078439|ref|XP_002443988.1| hypothetical
protein SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|514726952|ref|XP_004956106.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Setaria italica] gi|195609858|gb|ACG26759.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195620974|gb|ACG32317.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195645780|gb|ACG42358.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|195646246|gb|ACG42591.1|
DNA-directed RNA polymerases I, II, and III 7.3 kDa
polypeptide [Zea mays] gi|218188380|gb|EEC70807.1|
hypothetical protein OsI_02267 [Oryza sativa Indica
Group] gi|222618595|gb|EEE54727.1| hypothetical protein
OsJ_02072 [Oryza sativa Japonica Group]
gi|241925299|gb|EER98443.1| hypothetical protein
SORBIDRAFT_02g010660 [Sorghum bicolor]
gi|241940338|gb|EES13483.1| hypothetical protein
SORBIDRAFT_07g005435 [Sorghum bicolor]
gi|255673311|dbj|BAH91121.1| Os01g0530366 [Oryza sativa
Japonica Group] gi|255676033|dbj|BAH92949.1|
Os05g0151800 [Oryza sativa Japonica Group]
Length = 52
Score = 101 bits (251), Expect = 1e-19
Identities = 41/52 (78%), Positives = 51/52 (98%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP++YLCGDCGAENTLKPGDV+QCR+CG+R+L+KKRTRRI+Q++AR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_003563174.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
gi|357145250|ref|XP_003573577.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4-like
[Brachypodium distachyon]
Length = 52
Score = 98.2 bits (243), Expect = 1e-18
Identities = 40/52 (76%), Positives = 50/52 (96%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP++YLCGDCGAENTLK GDV+QCR+CG+R+L+KKRTRRI+Q++AR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKSGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>dbj|BAJ97697.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 52
Score = 98.2 bits (243), Expect = 1e-18
Identities = 40/52 (76%), Positives = 50/52 (96%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP++YLCGDCGAENTLK GDV+QCR+CG+R+L+KKRTRRI+Q++AR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKTGDVIQCRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_002870659.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297316495|gb|EFH46918.1| predicted protein
[Arabidopsis lyrata subsp. lyrata]
Length = 52
Score = 98.2 bits (243), Expect = 1e-18
Identities = 38/52 (73%), Positives = 50/52 (96%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
M+P QPEP+TY+CGDCG ENTLKPGDV+QCR+CG+R+L+KKRTRR++Q++AR
Sbjct: 1 MEPAQPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 52
>ref|XP_004972669.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Setaria italica]
Length = 52
Score = 97.4 bits (241), Expect = 2e-18
Identities = 39/52 (75%), Positives = 49/52 (94%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP++YLCGDCG+ENTLKPGDV+QCR CG+R+L+KKRT RI+Q++AR
Sbjct: 1 MDPQQPEPVSYLCGDCGSENTLKPGDVIQCRDCGYRILYKKRTHRIVQYEAR 52
>gb|ACG30756.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays]
Length = 52
Score = 97.1 bits (240), Expect = 2e-18
Identities = 40/52 (76%), Positives = 50/52 (96%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP++YLCGDCGAENTLKPGDV+Q R+CG+R+L+KKRTRRI+Q++AR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQWRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_001784402.1| predicted protein [Physcomitrella patens]
gi|162664073|gb|EDQ50807.1| predicted protein
[Physcomitrella patens]
Length = 56
Score = 96.3 bits (238), Expect = 4e-18
Identities = 40/54 (74%), Positives = 49/54 (90%)
Frame = +1
Query: 154 GVMDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
G M PEP+TYLCGDCGA+NTLKPGDV+QCR+CG+R+L+KKRTRRI+QF+AR
Sbjct: 3 GSMSAPPPEPVTYLCGDCGADNTLKPGDVIQCRECGYRILYKKRTRRIVQFEAR 56
>ref|XP_003595899.1| DNA-directed RNA polymerases I, II, and III subunit RPABC4
[Medicago truncatula] gi|355484947|gb|AES66150.1|
DNA-directed RNA polymerases I, II, and III subunit
RPABC4 [Medicago truncatula]
Length = 121
Score = 95.5 bits (236), Expect = 6e-18
Identities = 41/54 (75%), Positives = 50/54 (92%)
Frame = +1
Query: 154 GVMDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
GVMDPL PEP++YLCGDCG ENTLK GDV+QCR CG+R+L+KKRTRRI+Q++AR
Sbjct: 12 GVMDPL-PEPVSYLCGDCGVENTLKSGDVIQCRDCGYRILYKKRTRRIVQYEAR 64
Score = 66.2 bits (160), Expect = 4e-09
Identities = 29/52 (55%), Positives = 39/52 (75%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP P+PI YLCGDCGAE L V+QC C +++L+KKRT R++Q++AR
Sbjct: 71 MDP-PPQPIRYLCGDCGAETPLYTDGVLQCCVCFYKILYKKRTHRVLQYEAR 121
>ref|XP_002267800.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Vitis vinifera]
gi|225468167|ref|XP_002272054.1| PREDICTED: DNA-directed
RNA polymerases I, II, and III subunit RPABC4 [Vitis
vinifera] gi|297738145|emb|CBI27346.3| unnamed protein
product [Vitis vinifera]
Length = 51
Score = 94.7 bits (234), Expect = 1e-17
Identities = 39/52 (75%), Positives = 50/52 (96%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP++Y+CGDCG ENTLKPGDV+QCR+CG+R+L+KKRTRRI+Q++AR
Sbjct: 1 MDP-QPEPVSYICGDCGQENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_003534102.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
12-like [Glycine max] gi|356560019|ref|XP_003548293.1|
PREDICTED: DNA-directed RNA polymerases II, IV and V
subunit 12 [Glycine max]
gi|567912183|ref|XP_006448405.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|255630274|gb|ACU15492.1| unknown [Glycine max]
gi|557551016|gb|ESR61645.1| hypothetical protein
CICLE_v10017429mg [Citrus clementina]
gi|561025849|gb|ESW24534.1| hypothetical protein
PHAVU_004G138700g [Phaseolus vulgaris]
Length = 51
Score = 94.7 bits (234), Expect = 1e-17
Identities = 39/52 (75%), Positives = 50/52 (96%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP++Y+CGDCG ENTLKPGDV+QCR+CG+R+L+KKRTRRI+Q++AR
Sbjct: 1 MDP-QPEPVSYICGDCGMENTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|XP_003579926.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
RPABC4-like [Brachypodium distachyon]
Length = 52
Score = 94.4 bits (233), Expect = 1e-17
Identities = 39/52 (75%), Positives = 49/52 (94%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP++YLCGDCGAENTLK GDV+Q R+CG+R+L+KKRTRRI+Q++AR
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKSGDVIQSRECGYRILYKKRTRRIVQYEAR 52
>ref|XP_006284887.1| hypothetical protein CARUB_v10006178mg, partial [Capsella rubella]
gi|482553592|gb|EOA17785.1| hypothetical protein
CARUB_v10006178mg, partial [Capsella rubella]
Length = 68
Score = 93.2 bits (230), Expect = 3e-17
Identities = 37/52 (71%), Positives = 48/52 (92%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MD PEP+TY+CGDCG ENTLKPGDV+QCR+CG+R+L+KKRTRR++Q++AR
Sbjct: 17 MDQPLPEPVTYVCGDCGQENTLKPGDVIQCRECGYRILYKKRTRRVVQYEAR 68
>gb|EEE62363.1| hypothetical protein OsJ_17152 [Oryza sativa Japonica Group]
Length = 50
Score = 93.2 bits (230), Expect = 3e-17
Identities = 38/47 (80%), Positives = 45/47 (95%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIM 300
MDP QPEP++YLCGDCGAENTLKPGDV+QCR+CG+R+L+KKRTRR M
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRSM 47
>gb|EOY26301.1| DNA directed RNA polymerase, 7 kDa subunit [Theobroma cacao]
Length = 51
Score = 92.8 bits (229), Expect = 4e-17
Identities = 39/52 (75%), Positives = 49/52 (94%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP+TY+CGDCG ENTLK GDV+QCR+CG+R+L+KKRTRRI+Q++AR
Sbjct: 1 MDP-QPEPVTYICGDCGQENTLKHGDVIQCRECGYRILYKKRTRRIVQYEAR 51
>ref|NP_001150838.1| DNA-directed RNA polymerases I, II, and III 7.3 kDa polypeptide
[Zea mays] gi|195642292|gb|ACG40614.1| DNA-directed RNA
polymerases I, II, and III 7.3 kDa polypeptide [Zea
mays] gi|414589139|tpg|DAA39710.1| TPA: DNA-directed RNA
polymerase I, II, and III polypeptide [Zea mays]
Length = 53
Score = 92.8 bits (229), Expect = 4e-17
Identities = 39/50 (78%), Positives = 47/50 (94%)
Frame = +1
Query: 166 PLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
P QPEP+TY+CGDCGAENT+K DVVQCR+CGHR+L+KKRTRRI+QF+AR
Sbjct: 4 PQQPEPVTYVCGDCGAENTVKLVDVVQCRECGHRILYKKRTRRIVQFEAR 53
>ref|XP_006392763.1| hypothetical protein EUTSA_v10011934mg [Eutrema salsugineum]
gi|567131670|ref|XP_006392764.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|567131674|ref|XP_006392765.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089341|gb|ESQ30049.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089342|gb|ESQ30050.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
gi|557089343|gb|ESQ30051.1| hypothetical protein
EUTSA_v10011934mg [Eutrema salsugineum]
Length = 51
Score = 92.4 bits (228), Expect = 5e-17
Identities = 38/52 (73%), Positives = 49/52 (94%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDP QPEP+TY+CGDCG ENTLK GDV+QCR+CG+R+L+KKRTRR++Q++AR
Sbjct: 1 MDP-QPEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51
>gb|EEC78536.1| hypothetical protein OsI_18488 [Oryza sativa Indica Group]
Length = 87
Score = 92.4 bits (228), Expect = 5e-17
Identities = 38/50 (76%), Positives = 46/50 (92%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQ 309
MDP QPEP++YLCGDCGAENTLKPGDV+QCR+CG+R+L+KKRTRR + Q
Sbjct: 1 MDPQQPEPVSYLCGDCGAENTLKPGDVIQCRECGYRILYKKRTRRSCRSQ 50
>gb|ABK21111.1| unknown [Picea sitchensis]
Length = 53
Score = 92.4 bits (228), Expect = 5e-17
Identities = 36/50 (72%), Positives = 48/50 (96%)
Frame = +1
Query: 166 PLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
P PEP++Y+CGDCGAEN+LKPGDV+QCR+CG+R+L+KKRTRRI+Q++AR
Sbjct: 4 PAVPEPVSYICGDCGAENSLKPGDVIQCRECGYRILYKKRTRRIVQYEAR 53
>ref|XP_006405406.1| hypothetical protein EUTSA_v10028022mg [Eutrema salsugineum]
gi|557106544|gb|ESQ46859.1| hypothetical protein
EUTSA_v10028022mg [Eutrema salsugineum]
Length = 51
Score = 92.0 bits (227), Expect = 7e-17
Identities = 38/52 (73%), Positives = 49/52 (94%)
Frame = +1
Query: 160 MDPLQPEPITYLCGDCGAENTLKPGDVVQCRKCGHRVLHKKRTRRIMQFQAR 315
MDPL PEP+TY+CGDCG ENTLK GDV+QCR+CG+R+L+KKRTRR++Q++AR
Sbjct: 1 MDPL-PEPVTYVCGDCGQENTLKSGDVIQCRECGYRILYKKRTRRVVQYEAR 51