BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00045311
         (424 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...   180   2e-43
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi...   166   3e-39
gb|EMJ23574.1| hypothetical protein PRUPE_ppa004015mg [Prunus pe...   166   4e-39
gb|EOY01760.1| Pentatricopeptide repeat-containing protein [Theo...   164   9e-39
gb|ESW29575.1| hypothetical protein PHAVU_002G081200g [Phaseolus...   160   2e-37
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   157   1e-36
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi...   157   1e-36
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...   156   2e-36
ref|XP_006344328.1| PREDICTED: pentatricopeptide repeat-containi...   156   3e-36
ref|XP_004490153.1| PREDICTED: pentatricopeptide repeat-containi...   155   4e-36
ref|XP_004237221.1| PREDICTED: pentatricopeptide repeat-containi...   155   4e-36
gb|EXB65077.1| hypothetical protein L484_004253 [Morus notabilis]     154   2e-35
ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containi...   119   4e-25
emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]   119   4e-25
gb|EMJ03203.1| hypothetical protein PRUPE_ppa021060mg, partial [...   119   5e-25
ref|XP_002892433.1| pentatricopeptide repeat-containing protein ...   118   9e-25
ref|XP_004288805.1| PREDICTED: pentatricopeptide repeat-containi...   116   3e-24
gb|AEP33771.1| organelle transcript processing 82, partial [Thla...   115   5e-24
gb|AEP33768.1| organelle transcript processing 82, partial [Nast...   115   6e-24
ref|NP_172286.1| chloroplast RNA editing factor [Arabidopsis tha...   115   8e-24

>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  180 bits (456), Expect = 2e-43
 Identities = 87/140 (62%), Positives = 107/140 (76%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           LPYVLKACAGL+    G   H  ++KLGF+ D FV NTL +  ++  G+  +AR +FD +
Sbjct: 108 LPYVLKACAGLQSCHLGESAHGQSVKLGFWFDIFVGNTL-IAMYSSFGNVRAARCIFDEM 166

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P   AVSWTVMISGY ++GDVE AR+LFDE+P+KD GIWG+IIS YVQNNCFKEGL MFR
Sbjct: 167 PWHTAVSWTVMISGYAKVGDVETARMLFDEAPMKDRGIWGSIISGYVQNNCFKEGLQMFR 226

Query: 64  LMQAAGLEPDEGVLVTALSA 5
           LMQ+ GLEPDE +LV+ L A
Sbjct: 227 LMQSTGLEPDEAILVSILCA 246


>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  166 bits (420), Expect = 3e-39
 Identities = 80/140 (57%), Positives = 103/140 (73%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           +PYVLKACA L+D   G  VH ++ KLG   D FV N+L  +   CG D ++AR VFD +
Sbjct: 108 IPYVLKACAALRDCSLGKMVHGYSSKLGLVFDIFVGNSLMAMYSVCG-DVIAARHVFDEM 166

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P+  AVSW+VMISGY ++GDV++ARL FDE+P KD GIWGA+IS YVQN+CFKEGL +FR
Sbjct: 167 PRLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFR 226

Query: 64  LMQAAGLEPDEGVLVTALSA 5
           L+Q   + PDE + V+ LSA
Sbjct: 227 LLQLTHVVPDESIFVSILSA 246


>gb|EMJ23574.1| hypothetical protein PRUPE_ppa004015mg [Prunus persica]
          Length = 535

 Score =  166 bits (419), Expect = 4e-39
 Identities = 81/140 (57%), Positives = 102/140 (72%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           LPYVLKACA L+ +  G  VH  ++KLGF +D FV N+L +V +    D  +AR +FD I
Sbjct: 112 LPYVLKACARLQSSCLGELVHGCSLKLGFVSDIFVGNSL-IVMYCAFDDMKAARHIFDEI 170

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P   AVSWTVMISG+ + GD++ ARL FDE+P++D GIWGA+IS YVQNNCFKEGL MFR
Sbjct: 171 PSLSAVSWTVMISGHSKAGDLDTARLFFDEAPVRDRGIWGAMISGYVQNNCFKEGLYMFR 230

Query: 64  LMQAAGLEPDEGVLVTALSA 5
           LMQ   +EPDE + V+ L A
Sbjct: 231 LMQLTEIEPDEAIFVSVLCA 250


>gb|EOY01760.1| Pentatricopeptide repeat-containing protein [Theobroma cacao]
          Length = 523

 Score =  164 bits (416), Expect = 9e-39
 Identities = 85/141 (60%), Positives = 102/141 (72%), Gaps = 1/141 (0%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVS-ARQVFDG 248
           LPYVLKACA L+    G  V+ H +KLGF  D FV N  AL+   C  D V  AR +FD 
Sbjct: 108 LPYVLKACAKLQYFYFGELVYGHCLKLGFVFDIFVGN--ALIAMFCAFDNVKVARYIFDE 165

Query: 247 IPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMF 68
           IP  D VSWTVMISGYG++GD++ ARLLFDE+ +KD GIWGA+IS YV+NNCFKEGL MF
Sbjct: 166 IPWPDFVSWTVMISGYGKIGDIDTARLLFDEASVKDAGIWGAMISGYVKNNCFKEGLYMF 225

Query: 67  RLMQAAGLEPDEGVLVTALSA 5
           RLMQ + +EPDE + V+ L A
Sbjct: 226 RLMQMSDIEPDEAIYVSVLCA 246


>gb|ESW29575.1| hypothetical protein PHAVU_002G081200g [Phaseolus vulgaris]
          Length = 517

 Score =  160 bits (405), Expect = 2e-37
 Identities = 80/139 (57%), Positives = 99/139 (71%)
 Frame = -1

Query: 421 PYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGIP 242
           PYVLKACA L     G  VH ++ K G   D FV N+L  +   CG D V+AR VFD IP
Sbjct: 109 PYVLKACAALHSRSLGQMVHGYSSKAGLVYDIFVGNSLMAMYSVCG-DVVAARYVFDEIP 167

Query: 241 QRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFRL 62
           +  AVSW+VMISGY ++GDV++ARL FDE+P KD GIWGA+IS YVQN+CFKEGL +FRL
Sbjct: 168 RLSAVSWSVMISGYAKVGDVDSARLFFDEAPEKDRGIWGAMISGYVQNSCFKEGLYLFRL 227

Query: 61  MQAAGLEPDEGVLVTALSA 5
           +Q   + PDE + V+ LSA
Sbjct: 228 LQLTEVVPDESICVSILSA 246


>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  157 bits (397), Expect = 1e-36
 Identities = 83/140 (59%), Positives = 100/140 (71%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           LPYVLKA A + +   G  +HA TIKLG   + FV N+L LV +    +  SARQVFD +
Sbjct: 108 LPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSL-LVMYRSFDNMRSARQVFDEM 166

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P+  AVSWTVMI GY  +GDV+ AR LFD + +KD GIWGA+IS YVQNNCFKEGL MFR
Sbjct: 167 PELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFR 226

Query: 64  LMQAAGLEPDEGVLVTALSA 5
           LMQ   +EPDE ++VT LSA
Sbjct: 227 LMQLTEVEPDEAIIVTILSA 246


>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score =  157 bits (397), Expect = 1e-36
 Identities = 83/140 (59%), Positives = 100/140 (71%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           LPYVLKA A + +   G  +HA TIKLG   + FV N+L LV +    +  SARQVFD +
Sbjct: 108 LPYVLKASARMTNIHLGESIHACTIKLGSAVNEFVGNSL-LVMYRSFDNMRSARQVFDEM 166

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P+  AVSWTVMI GY  +GDV+ AR LFD + +KD GIWGA+IS YVQNNCFKEGL MFR
Sbjct: 167 PELSAVSWTVMIYGYANMGDVDTARELFDMATVKDTGIWGAMISGYVQNNCFKEGLHMFR 226

Query: 64  LMQAAGLEPDEGVLVTALSA 5
           LMQ   +EPDE ++VT LSA
Sbjct: 227 LMQLTEVEPDEAIIVTILSA 246


>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score =  156 bits (395), Expect = 2e-36
 Identities = 76/140 (54%), Positives = 98/140 (70%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           +PYVLKAC    D   G  +H ++ KLG   D +V N+L +  +   GD V+AR VFD I
Sbjct: 110 IPYVLKACGTFHDCSFGKMIHGYSSKLGLVFDIYVGNSL-MAMYCVFGDVVAARYVFDEI 168

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P  + VSW+VMISGY ++GDV++ARL FDE+P KD GIWGA+IS YVQN+CFKE L +FR
Sbjct: 169 PSLNVVSWSVMISGYAKVGDVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFR 228

Query: 64  LMQAAGLEPDEGVLVTALSA 5
           LMQ   + PDE + V+ LSA
Sbjct: 229 LMQLTDIVPDESIFVSILSA 248


>ref|XP_006344328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Solanum tuberosum]
          Length = 530

 Score =  156 bits (394), Expect = 3e-36
 Identities = 78/140 (55%), Positives = 96/140 (68%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           LPYVLKAC  +K    G  VH   +KLGF  DTFV N+L +  + C  +  +AR VF  I
Sbjct: 110 LPYVLKACGRMKSFHLGELVHGQILKLGFLIDTFVGNSL-IGFYTCFDNVEAARSVFYEI 168

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P    VSWTV+I GY + GDV  ARL+FDE  +KD G+WG +IS YVQNNCFKEGL +FR
Sbjct: 169 PCNCVVSWTVLICGYAKTGDVYEARLIFDECLVKDRGVWGCMISCYVQNNCFKEGLQLFR 228

Query: 64  LMQAAGLEPDEGVLVTALSA 5
            MQ +G+EPDE +LV+ LSA
Sbjct: 229 QMQMSGIEPDEAILVSVLSA 248


>ref|XP_004490153.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cicer arietinum]
          Length = 523

 Score =  155 bits (393), Expect = 4e-36
 Identities = 79/140 (56%), Positives = 98/140 (70%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           +PYVLKACA L D   G  VH +  KLG   D FV N+L +  +   GD V+AR VFD I
Sbjct: 110 VPYVLKACAALHDCSLGKLVHGYGSKLGLVFDIFVGNSL-MSMYVVFGDVVAARYVFDEI 168

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P    VSW+VMISGY ++G+V++ARL FDE+P KD GIWGA+IS YVQN+CFKE L +FR
Sbjct: 169 PCLSLVSWSVMISGYAKMGNVDSARLFFDEAPEKDKGIWGAMISGYVQNSCFKESLYLFR 228

Query: 64  LMQAAGLEPDEGVLVTALSA 5
           LMQ   + PDE + V+ LSA
Sbjct: 229 LMQLTDIVPDESIFVSILSA 248


>ref|XP_004237221.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Solanum lycopersicum]
          Length = 586

 Score =  155 bits (393), Expect = 4e-36
 Identities = 78/140 (55%), Positives = 96/140 (68%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           LPYVLKAC  +K    G  VH   +KLGF  DTFV N+L +  + C  +  +AR VF  I
Sbjct: 110 LPYVLKACGRMKSLHLGELVHGQILKLGFLIDTFVGNSL-IGFYTCFDNVEAARSVFYEI 168

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P    VSWTV+I GY + GDV  ARL+FDE  +KD G+WG +IS YVQNNCFKEGL +FR
Sbjct: 169 PCNCVVSWTVLICGYAKRGDVYEARLVFDECLVKDRGVWGCMISCYVQNNCFKEGLQLFR 228

Query: 64  LMQAAGLEPDEGVLVTALSA 5
            MQ +G+EPDE +LV+ LSA
Sbjct: 229 QMQMSGIEPDEAILVSVLSA 248


>gb|EXB65077.1| hypothetical protein L484_004253 [Morus notabilis]
          Length = 508

 Score =  154 bits (388), Expect = 2e-35
 Identities = 76/138 (55%), Positives = 98/138 (71%)
 Frame = -1

Query: 424 LPYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGI 245
           LPYVLKAC+ L+ A  G  VH H +K G   D FV N+L +V ++   +  +ARQVFD +
Sbjct: 92  LPYVLKACSRLQSACLGVSVHGHGLKSGLAFDLFVGNSL-IVMYSEFRNMEAARQVFDEM 150

Query: 244 PQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFR 65
           P    VSW VMISGYG++G+V+  RL FD +P++D GIWGA+IS YVQN CFKEGL +FR
Sbjct: 151 PSLSTVSWMVMISGYGKVGEVDKERLFFDLAPVRDRGIWGAMISGYVQNACFKEGLYLFR 210

Query: 64  LMQAAGLEPDEGVLVTAL 11
           LMQ A +EPDE + V+ L
Sbjct: 211 LMQCAEIEPDEAIFVSVL 228


>ref|XP_002282063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g66520-like [Vitis vinifera]
          Length = 533

 Score =  119 bits (298), Expect = 4e-25
 Identities = 63/141 (44%), Positives = 89/141 (63%), Gaps = 2/141 (1%)
 Frame = -1

Query: 421 PYVLKACA--GLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDG 248
           P ++KAC   G    + G  VHAH +  GF  D FV + L +  ++   D  +AR +FD 
Sbjct: 116 PPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSAL-IEFYSLNFDMGTARTLFDR 174

Query: 247 IPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMF 68
           IP RD V WT MI GYG++GDVE+AR+LF++ P ++   W A+++AY +   FKE L +F
Sbjct: 175 IPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLF 234

Query: 67  RLMQAAGLEPDEGVLVTALSA 5
           R MQ AG  P+E VLV+ L+A
Sbjct: 235 RRMQEAGTMPNESVLVSVLTA 255



 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
 Frame = -1

Query: 415 VLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGIPQR 236
           VL ACA L     G  VH++  +  F ++  +   L  +   CG    SA   F GIP +
Sbjct: 252 VLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGC-VESALSTFQGIPNK 310

Query: 235 DAVSWTVMISGYGQLGDVENARLLFDE----SPLKDHGIWGAIISAYVQNNCFKEGLSMF 68
           DA +W  MISG    GD   +  LF++            + A+++A       KEGL +F
Sbjct: 311 DAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVKEGLKLF 370

Query: 67  RLMQA-AGLEP 38
             M +  G+EP
Sbjct: 371 EQMSSNYGVEP 381


>emb|CAN65024.1| hypothetical protein VITISV_026273 [Vitis vinifera]
          Length = 805

 Score =  119 bits (298), Expect = 4e-25
 Identities = 63/141 (44%), Positives = 89/141 (63%), Gaps = 2/141 (1%)
 Frame = -1

Query: 421 PYVLKACA--GLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDG 248
           P ++KAC   G    + G  VHAH +  GF  D FV + L +  ++   D  +AR +FD 
Sbjct: 388 PPLIKACTTLGSSSKLIGCLVHAHVVTFGFDEDPFVVSAL-IEFYSLNFDMGTARTLFDR 446

Query: 247 IPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMF 68
           IP RD V WT MI GYG++GDVE+AR+LF++ P ++   W A+++AY +   FKE L +F
Sbjct: 447 IPNRDVVLWTAMIDGYGKMGDVEHARILFEDMPERNAISWSAVMAAYSRVGDFKEVLCLF 506

Query: 67  RLMQAAGLEPDEGVLVTALSA 5
           R MQ AG  P+E VLV+ L+A
Sbjct: 507 RRMQEAGTMPNESVLVSVLTA 527



 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 40/131 (30%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
 Frame = -1

Query: 415 VLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGIPQR 236
           VL ACA L     G  VH++  +  F ++  +   L  +   CG    SA   F GIP +
Sbjct: 524 VLTACAHLGALAQGLWVHSYAKQCNFDSNPILATALVDMYSKCGC-VESALSTFQGIPNK 582

Query: 235 DAVSWTVMISGYGQLGDVENARLLFDE----SPLKDHGIWGAIISAYVQNNCFKEGLSMF 68
           DA +W  MISG    GD   +  LF++            + A+++A       +EGL +F
Sbjct: 583 DAGAWNAMISGVAMNGDAWKSLELFNKMISNGTQPTETTFVAVLTACTHARLVREGLKLF 642

Query: 67  RLMQA-AGLEP 38
             M +  G+EP
Sbjct: 643 EQMSSNYGVEP 653


>gb|EMJ03203.1| hypothetical protein PRUPE_ppa021060mg, partial [Prunus persica]
          Length = 554

 Score =  119 bits (297), Expect = 5e-25
 Identities = 64/142 (45%), Positives = 92/142 (64%), Gaps = 2/142 (1%)
 Frame = -1

Query: 421 PYVLKACAGL--KDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDG 248
           P ++KAC  L     ++G  VH H +K G+  D FV ++L +  ++   D  +A+ VFD 
Sbjct: 140 PPLIKACTVLIPNSKLSGRLVHGHVVKFGYRDDPFVLSSL-IEFYSVIHDMETAKLVFDK 198

Query: 247 IPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMF 68
            P+RD V WT MI GYG+ GDVENAR LFDE P ++   W A+++AY + + F+E LS+F
Sbjct: 199 SPKRDVVVWTAMIDGYGKAGDVENARALFDEMPERNAISWSAMMAAYSRVSHFREVLSLF 258

Query: 67  RLMQAAGLEPDEGVLVTALSAS 2
           R MQ  G +P+E VLV+ L+AS
Sbjct: 259 RQMQEVGTKPNESVLVSVLTAS 280


>ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297338275|gb|EFH68692.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 741

 Score =  118 bits (295), Expect = 9e-25
 Identities = 60/139 (43%), Positives = 83/139 (59%)
 Frame = -1

Query: 421 PYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGIP 242
           P++LK+CA  K    G Q+H H +KLG+  D FV  +L  V +   G    AR+VFD  P
Sbjct: 138 PFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISV-YVQNGRLEDARKVFDRSP 196

Query: 241 QRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFRL 62
            RD VS+T +I GY   G +E+A+ LFDE P+KD   W A+IS Y +   +KE L +F+ 
Sbjct: 197 HRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKE 256

Query: 61  MQAAGLEPDEGVLVTALSA 5
           M    + PDE  +VT +SA
Sbjct: 257 MMKTNIRPDESTMVTVVSA 275


>ref|XP_004288805.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g48910-like [Fragaria vesca subsp. vesca]
          Length = 525

 Score =  116 bits (291), Expect = 3e-24
 Identities = 62/143 (43%), Positives = 92/143 (64%), Gaps = 3/143 (2%)
 Frame = -1

Query: 421 PYVLKACAGLKD---AVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFD 251
           P ++KAC  L +    + G  VHAH +KLGF  D FV + L +  ++   +  SAR VFD
Sbjct: 110 PPLIKACVMLMEHDSGLTGRLVHAHVVKLGFGDDPFVVSGL-IEFYSASVEIGSARLVFD 168

Query: 250 GIPQRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSM 71
              ++D V WT M+ GYG++GDVENAR +FDE P ++   W A+++AY + + F+E + +
Sbjct: 169 KSHEKDVVVWTAMVDGYGKIGDVENARKVFDEMPERNAVSWSAMMAAYSRVSGFREVICL 228

Query: 70  FRLMQAAGLEPDEGVLVTALSAS 2
           FR MQ AG  P+E VLV+ L+A+
Sbjct: 229 FRQMQEAGTRPNEAVLVSVLTAA 251


>gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  115 bits (289), Expect = 5e-24
 Identities = 57/139 (41%), Positives = 84/139 (60%)
 Frame = -1

Query: 421 PYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGIP 242
           P++LK+CA  K    G Q+H H +KLG+  D +V +T  +  +A  G    A +VFD   
Sbjct: 70  PFLLKSCAKSKAFEEGQQIHGHVLKLGYEPDLYV-HTSLISMYAQNGRLEDAHKVFDRSS 128

Query: 241 QRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFRL 62
            RD VS+T +I+GY   G++ +A+ +FDE P+KD   W A+IS Y +   +KE L +F+ 
Sbjct: 129 HRDVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKE 188

Query: 61  MQAAGLEPDEGVLVTALSA 5
           M    + PDEG +VT LSA
Sbjct: 189 MMKTNVRPDEGTMVTVLSA 207


>gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  115 bits (288), Expect = 6e-24
 Identities = 57/140 (40%), Positives = 85/140 (60%)
 Frame = -1

Query: 421 PYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGIP 242
           P++LK+CA LK +  G Q+H H +KLG+  D +V +T  +  +        A +VFD   
Sbjct: 67  PFLLKSCAKLKASKEGLQIHGHVLKLGYELDLYV-HTSLISMYVQNERLEDAHKVFDRSS 125

Query: 241 QRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFRL 62
            RD VS+T +++GY   G +E+AR +FDE P+KD   W A+IS YV+   +KE L +F+ 
Sbjct: 126 HRDVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKE 185

Query: 61  MQAAGLEPDEGVLVTALSAS 2
           M    + PDE  +VT +SAS
Sbjct: 186 MMKTNVRPDESTMVTVISAS 205


>ref|NP_172286.1| chloroplast RNA editing factor [Arabidopsis thaliana]
           gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At1g08070 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15
           [Arabidopsis thaliana] gi|332190118|gb|AEE28239.1|
           chloroplast RNA editing factor [Arabidopsis thaliana]
          Length = 741

 Score =  115 bits (287), Expect = 8e-24
 Identities = 59/139 (42%), Positives = 81/139 (58%)
 Frame = -1

Query: 421 PYVLKACAGLKDAVAGAQVHAHTIKLGFFADTFVCNTLALVCFACGGDAVSARQVFDGIP 242
           P+VLK+CA  K    G Q+H H +KLG   D +V +T  +  +   G    A +VFD  P
Sbjct: 138 PFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYV-HTSLISMYVQNGRLEDAHKVFDKSP 196

Query: 241 QRDAVSWTVMISGYGQLGDVENARLLFDESPLKDHGIWGAIISAYVQNNCFKEGLSMFRL 62
            RD VS+T +I GY   G +ENA+ LFDE P+KD   W A+IS Y +   +KE L +F+ 
Sbjct: 197 HRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKD 256

Query: 61  MQAAGLEPDEGVLVTALSA 5
           M    + PDE  +VT +SA
Sbjct: 257 MMKTNVRPDESTMVTVVSA 275