BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00044819
         (302 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    72   8e-11
gb|EOY17313.1| Pentatricopeptide repeat-containing protein, puta...    71   1e-10
ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_006297048.1| hypothetical protein CARUB_v10013045mg [Caps...    67   2e-09
ref|XP_002882856.1| pentatricopeptide repeat-containing protein ...    65   7e-09
ref|XP_006407155.1| hypothetical protein EUTSA_v10020137mg [Eutr...    64   2e-08
ref|NP_188004.1| pentatricopeptide repeat-containing protein [Ar...    62   6e-08
ref|XP_006577708.1| PREDICTED: pentatricopeptide repeat-containi...    62   1e-07
ref|XP_002521822.1| pentatricopeptide repeat-containing protein,...    60   4e-07
ref|XP_006604564.1| PREDICTED: pentatricopeptide repeat-containi...    59   5e-07
ref|XP_002324099.1| hypothetical protein POPTR_0017s12720g [Popu...    59   9e-07
ref|XP_002522334.1| pentatricopeptide repeat-containing protein,...    58   1e-06
gb|ESW34699.1| hypothetical protein PHAVU_001G173400g [Phaseolus...    58   1e-06
ref|XP_006855406.1| hypothetical protein AMTR_s00057p00151990 [A...    57   3e-06
ref|XP_003559172.1| PREDICTED: pentatricopeptide repeat-containi...    57   3e-06
ref|XP_006841553.1| hypothetical protein AMTR_s00003p00175270 [A...    56   4e-06
gb|EOY33417.1| Tetratricopeptide repeat-like superfamily protein...    56   4e-06
ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containi...    56   4e-06
gb|EMJ04813.1| hypothetical protein PRUPE_ppa002292mg [Prunus pe...    56   6e-06
ref|XP_001768535.1| predicted protein [Physcomitrella patens] gi...    55   7e-06

>ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score = 72.0 bits (175), Expect = 8e-11
 Identities = 43/104 (41%), Positives = 54/104 (51%), Gaps = 14/104 (13%)
 Frame = +3

Query: 30  SKHVFFYRLP---KQHFNSFPTQQQIPLQPR-----------LSQAMYSDLLISATQSQS 167
           S  + F+ LP   +Q   SF T   + L              L    Y  L+ SAT++  
Sbjct: 15  STPLMFHMLPFSSRQSIESFATLGSVSLSSSQVFPAYSSTFLLESVDYVKLVQSATKTGK 74

Query: 168 LLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQRLFD 299
           L HGK VHSH+ K  F PCLFLQN +LNMYCKC +   A +LFD
Sbjct: 75  LNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFD 118


>gb|EOY17313.1| Pentatricopeptide repeat-containing protein, putative isoform 1
           [Theobroma cacao] gi|508725417|gb|EOY17314.1|
           Pentatricopeptide repeat-containing protein, putative
           isoform 1 [Theobroma cacao]
          Length = 669

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 33/62 (53%), Positives = 41/62 (66%)
 Frame = +3

Query: 114 LSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQRL 293
           L   +Y+ L+  +T+S   LHGK  H+HI K  F PCLFL N +LNMYCK  EM +A RL
Sbjct: 14  LDSVIYTKLVQHSTKSGCFLHGKLAHTHIIKSAFKPCLFLLNNLLNMYCKAGEMDVAHRL 73

Query: 294 FD 299
           FD
Sbjct: 74  FD 75


>ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 31/62 (50%), Positives = 42/62 (67%)
 Frame = +3

Query: 114 LSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQRL 293
           L    Y+ L+  +T++ SL+HGK  H H+ K CF PCLFL N +L MYCKC E  +A++L
Sbjct: 17  LDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETDVAKKL 76

Query: 294 FD 299
           FD
Sbjct: 77  FD 78


>ref|XP_006297048.1| hypothetical protein CARUB_v10013045mg [Capsella rubella]
           gi|482565757|gb|EOA29946.1| hypothetical protein
           CARUB_v10013045mg [Capsella rubella]
          Length = 745

 Score = 67.4 bits (163), Expect = 2e-09
 Identities = 30/67 (44%), Positives = 42/67 (62%)
 Frame = +3

Query: 99  PLQPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMV 278
           P    L    YS+L  +A +S S++ GK  H H+ K    PCL+L N +LNMYCKC+E+ 
Sbjct: 40  PKNTALDSKAYSELFQTAAKSGSVVLGKLAHGHMIKSSLKPCLYLLNNVLNMYCKCRELG 99

Query: 279 LAQRLFD 299
            A++LFD
Sbjct: 100 FARQLFD 106


>ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297328696|gb|EFH59115.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 753

 Score = 65.5 bits (158), Expect = 7e-09
 Identities = 30/67 (44%), Positives = 40/67 (59%)
 Frame = +3

Query: 99  PLQPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMV 278
           P    L    Y  L  +A +S SL+ GK  H H+ K    PCL+L N +LNMYCKC+E+ 
Sbjct: 41  PKNTALDSEAYKKLFQTAAKSGSLVLGKLAHGHMVKSSLNPCLYLLNNLLNMYCKCRELG 100

Query: 279 LAQRLFD 299
            A++LFD
Sbjct: 101 FARQLFD 107


>ref|XP_006407155.1| hypothetical protein EUTSA_v10020137mg [Eutrema salsugineum]
           gi|557108301|gb|ESQ48608.1| hypothetical protein
           EUTSA_v10020137mg [Eutrema salsugineum]
          Length = 751

 Score = 64.3 bits (155), Expect = 2e-08
 Identities = 30/67 (44%), Positives = 41/67 (61%)
 Frame = +3

Query: 99  PLQPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMV 278
           P    L    Y+ L+  A +S S++ GK VH H+ K    PCL L N +LNMYCKC+E+ 
Sbjct: 39  PKNTALDSEAYTKLVQKAAKSGSVVLGKLVHGHMIKSSINPCLHLLNNLLNMYCKCRELG 98

Query: 279 LAQRLFD 299
            A++LFD
Sbjct: 99  FARQLFD 105


>ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At3g13880 gi|9294611|dbj|BAB02912.1| probable
           selenium-binding protein [Arabidopsis thaliana]
           gi|332641909|gb|AEE75430.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 29/67 (43%), Positives = 40/67 (59%)
 Frame = +3

Query: 99  PLQPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMV 278
           P    L    Y  L  +A +S S++ GK  H H+ K    PCL+L N +LNMYCKC+E+ 
Sbjct: 40  PKNTALDSEGYKILFQTAAKSGSVVLGKLAHGHMIKSSLNPCLYLLNNLLNMYCKCRELG 99

Query: 279 LAQRLFD 299
            A++LFD
Sbjct: 100 FARQLFD 106


>ref|XP_006577708.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like, partial [Glycine max]
          Length = 799

 Score = 61.6 bits (148), Expect = 1e-07
 Identities = 34/85 (40%), Positives = 47/85 (55%)
 Frame = +3

Query: 48  YRLPKQHFNSFPTQQQIPLQPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCL 227
           YR     FN  P    I L+     + Y +L+++ T  +SL +GK++H HI K    P L
Sbjct: 81  YREALDTFNFHPKNSSIQLE----SSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDL 136

Query: 228 FLQNTILNMYCKCKEMVLAQRLFDT 302
            LQN ILNMY KC  +  A++ FDT
Sbjct: 137 VLQNHILNMYGKCGSLKDARKAFDT 161


>ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223539035|gb|EEF40632.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 793

 Score = 59.7 bits (143), Expect = 4e-07
 Identities = 29/62 (46%), Positives = 39/62 (62%)
 Frame = +3

Query: 114 LSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQRL 293
           L    Y+ L+  +++S S +HGK  H+H+ K  F PCLFL N  LN+Y K  EM  AQ+L
Sbjct: 7   LDSVAYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKL 66

Query: 294 FD 299
           FD
Sbjct: 67  FD 68


>ref|XP_006604564.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 762

 Score = 59.3 bits (142), Expect = 5e-07
 Identities = 34/85 (40%), Positives = 46/85 (54%)
 Frame = +3

Query: 48  YRLPKQHFNSFPTQQQIPLQPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCL 227
           YR     FN       I L+P    + Y +L+++ T  +SL +GK +H HI K    P L
Sbjct: 45  YREALDTFNFHLKNSSIQLEP----STYVNLILACTNVRSLKYGKRIHDHILKSNCQPDL 100

Query: 228 FLQNTILNMYCKCKEMVLAQRLFDT 302
            LQN ILNMY KC  +  A++ FDT
Sbjct: 101 VLQNHILNMYGKCGSLKDARKAFDT 125


>ref|XP_002324099.1| hypothetical protein POPTR_0017s12720g [Populus trichocarpa]
           gi|222867101|gb|EEF04232.1| hypothetical protein
           POPTR_0017s12720g [Populus trichocarpa]
          Length = 676

 Score = 58.5 bits (140), Expect = 9e-07
 Identities = 28/61 (45%), Positives = 40/61 (65%)
 Frame = +3

Query: 117 SQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQRLF 296
           S ++YS L+ S  +S+ L  GK+VH HI    FVP LF+ N +L MY KC  ++ +Q+LF
Sbjct: 69  SASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQKLF 128

Query: 297 D 299
           D
Sbjct: 129 D 129


>ref|XP_002522334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223538412|gb|EEF40018.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 507

 Score = 58.2 bits (139), Expect = 1e-06
 Identities = 27/63 (42%), Positives = 43/63 (68%)
 Frame = +3

Query: 111 RLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQR 290
           R S ++YS L+ S  ++++L  GK+VH HI    F+P L + N +L+MY KC ++V AQ+
Sbjct: 77  RPSPSIYSSLIQSCLKNRALEVGKKVHDHIKLSGFIPGLVISNRLLDMYAKCNDLVDAQK 136

Query: 291 LFD 299
           LF+
Sbjct: 137 LFE 139


>gb|ESW34699.1| hypothetical protein PHAVU_001G173400g [Phaseolus vulgaris]
          Length = 763

 Score = 57.8 bits (138), Expect = 1e-06
 Identities = 28/63 (44%), Positives = 42/63 (66%)
 Frame = +3

Query: 111 RLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQR 290
           +L  + Y++L+++ T  +SL +GK++H HI+K    P L LQN ILNMY KC     A++
Sbjct: 62  QLEPSTYANLILACTNVRSLNYGKKIHEHISKSNCQPDLVLQNHILNMYGKCGSSKDARK 121

Query: 291 LFD 299
           LFD
Sbjct: 122 LFD 124


>ref|XP_006855406.1| hypothetical protein AMTR_s00057p00151990 [Amborella trichopoda]
           gi|548859172|gb|ERN16873.1| hypothetical protein
           AMTR_s00057p00151990 [Amborella trichopoda]
          Length = 866

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 30/77 (38%), Positives = 47/77 (61%)
 Frame = +3

Query: 69  FNSFPTQQQIPLQPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTIL 248
           F+   TQ + PL    +   YS LL  + +S+SL +G  VH+H+ +  FVP +F+QN ++
Sbjct: 71  FSHSQTQTKAPL----THNAYSRLLSESIRSKSLEYGSMVHTHMAQTGFVPDIFIQNNLI 126

Query: 249 NMYCKCKEMVLAQRLFD 299
           NMY KC  +  A ++FD
Sbjct: 127 NMYVKCGSIHGAIKVFD 143


>ref|XP_003559172.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 846

 Score = 56.6 bits (135), Expect = 3e-06
 Identities = 28/65 (43%), Positives = 44/65 (67%)
 Frame = +3

Query: 105 QPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLA 284
           +P L  A Y+ LL +A++++SL  GK  HSH+ +  + P LFL+N +L +YC+C +M  A
Sbjct: 47  RPPLEPAAYAALLRAASRARSLPLGKLTHSHMLRAGYRPGLFLRNNLLAVYCRCGDMRHA 106

Query: 285 QRLFD 299
           + LFD
Sbjct: 107 RLLFD 111


>ref|XP_006841553.1| hypothetical protein AMTR_s00003p00175270 [Amborella trichopoda]
           gi|548843574|gb|ERN03228.1| hypothetical protein
           AMTR_s00003p00175270 [Amborella trichopoda]
          Length = 327

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 29/69 (42%), Positives = 40/69 (57%)
 Frame = +3

Query: 93  QIPLQPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKE 272
           QIPL P      YS LL   T S+SL+ G E+H+HI K    P + ++N I+ MY  C+ 
Sbjct: 5   QIPLTP----IAYSSLLKECTSSKSLVEGSEIHAHINKTSLYPGIHIENQIILMYMACRC 60

Query: 273 MVLAQRLFD 299
             LA ++FD
Sbjct: 61  PTLAYQVFD 69


>gb|EOY33417.1| Tetratricopeptide repeat-like superfamily protein [Theobroma cacao]
          Length = 961

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 26/62 (41%), Positives = 38/62 (61%)
 Frame = +3

Query: 114 LSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQRL 293
           L + + S  L S TQ+ +LLHG+ +H+   K      L+LQN ILNMY KC +++   +L
Sbjct: 341 LEENLCSKFLTSCTQTSNLLHGQAIHAKFIKGSIPHSLYLQNHILNMYLKCGDLINGHKL 400

Query: 294 FD 299
           FD
Sbjct: 401 FD 402


>ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score = 56.2 bits (134), Expect = 4e-06
 Identities = 28/62 (45%), Positives = 41/62 (66%)
 Frame = +3

Query: 114 LSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQRL 293
           L+ + Y+ L+ + +  +SL HGK++H H+ K    P L LQN ILNMY KCK +  AQ++
Sbjct: 61  LTLSTYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKV 120

Query: 294 FD 299
           FD
Sbjct: 121 FD 122


>gb|EMJ04813.1| hypothetical protein PRUPE_ppa002292mg [Prunus persica]
          Length = 691

 Score = 55.8 bits (133), Expect = 6e-06
 Identities = 27/63 (42%), Positives = 41/63 (65%)
 Frame = +3

Query: 111 RLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILNMYCKCKEMVLAQR 290
           R S ++YS LL    Q ++L+ GK VH+H     FVP LF+ N ++++Y KC  +V AQ+
Sbjct: 82  RPSASIYSTLLQLCLQQRALVQGKLVHAHTKVSGFVPGLFICNRLIDLYAKCGSLVDAQK 141

Query: 291 LFD 299
           +FD
Sbjct: 142 VFD 144


>ref|XP_001768535.1| predicted protein [Physcomitrella patens]
           gi|162680248|gb|EDQ66686.1| predicted protein
           [Physcomitrella patens]
          Length = 505

 Score = 55.5 bits (132), Expect = 7e-06
 Identities = 30/76 (39%), Positives = 43/76 (56%)
 Frame = +3

Query: 72  NSFPTQQQIPLQPRLSQAMYSDLLISATQSQSLLHGKEVHSHITKQCFVPCLFLQNTILN 251
           NS    +Q  ++P  S   Y  LL   T  + L  GK VH+H+ K  FVP  F+ N ++N
Sbjct: 35  NSLHILEQRGIEP--SSYAYVCLLRRCTHMKDLAEGKYVHAHMAKSDFVPTTFVLNALVN 92

Query: 252 MYCKCKEMVLAQRLFD 299
           MY KC  +V A+++FD
Sbjct: 93  MYMKCGSLVDARQVFD 108