BLASTX nr result
ID: Zingiber25_contig00044089
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00044089
(398 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [S... 79 6e-13
ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D sub... 78 1e-12
ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D sub... 78 1e-12
ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D sub... 78 1e-12
ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D sub... 78 1e-12
gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest sub... 78 1e-12
ref|NP_001182824.1| DNA dependent RNA polymerase D largest subun... 78 1e-12
ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D sub... 73 4e-11
emb|CAD41657.3| OSJNBa0019K04.4 [Oryza sativa Japonica Group] 70 2e-10
gb|ACR37743.1| unknown [Zea mays] 70 2e-10
gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japo... 70 2e-10
ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japonica Group] g... 70 2e-10
ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV su... 69 5e-10
gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indi... 69 6e-10
emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group] 69 6e-10
ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV su... 69 8e-10
gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aeg... 68 1e-09
gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum... 68 1e-09
gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japo... 68 1e-09
gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indi... 68 1e-09
>ref|XP_002446962.1| hypothetical protein SORBIDRAFT_06g025933 [Sorghum bicolor]
gi|241938145|gb|EES11290.1| hypothetical protein
SORBIDRAFT_06g025933 [Sorghum bicolor]
Length = 1203
Score = 79.0 bits (193), Expect = 6e-13
Identities = 34/62 (54%), Positives = 48/62 (77%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM SL+ +L +YP++GY+ E DKS L+EAL++HP+ AEKIG G+REIKVG +
Sbjct: 1097 WDNIIDMRASLQNMLREYPLNGYVMEPDKSKLIEALKFHPRGAEKIGVGVREIKVGLNPN 1156
Query: 392 HP 397
HP
Sbjct: 1157 HP 1158
>ref|XP_004970758.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X5
[Setaria italica]
Length = 1181
Score = 78.2 bits (191), Expect = 1e-12
Identities = 32/62 (51%), Positives = 48/62 (77%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +YP++G++ E DKS L+EAL++HP A+KIG G+REIK+G +
Sbjct: 1074 WDNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPS 1133
Query: 392 HP 397
HP
Sbjct: 1134 HP 1135
>ref|XP_004970756.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X3
[Setaria italica]
Length = 1362
Score = 78.2 bits (191), Expect = 1e-12
Identities = 32/62 (51%), Positives = 48/62 (77%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +YP++G++ E DKS L+EAL++HP A+KIG G+REIK+G +
Sbjct: 1255 WDNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPS 1314
Query: 392 HP 397
HP
Sbjct: 1315 HP 1316
>ref|XP_004970755.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X2
[Setaria italica]
Length = 1450
Score = 78.2 bits (191), Expect = 1e-12
Identities = 32/62 (51%), Positives = 48/62 (77%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +YP++G++ E DKS L+EAL++HP A+KIG G+REIK+G +
Sbjct: 1343 WDNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPS 1402
Query: 392 HP 397
HP
Sbjct: 1403 HP 1404
>ref|XP_004970754.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like isoform X1
[Setaria italica] gi|514785102|ref|XP_004970757.1|
PREDICTED: DNA-directed RNA polymerase D subunit 1-like
isoform X4 [Setaria italica]
Length = 1451
Score = 78.2 bits (191), Expect = 1e-12
Identities = 32/62 (51%), Positives = 48/62 (77%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +YP++G++ E DKS L+EAL++HP A+KIG G+REIK+G +
Sbjct: 1344 WDNIIDMRTSLQNMLREYPLNGFVKETDKSQLVEALKFHPNGAQKIGVGVREIKIGLNPS 1403
Query: 392 HP 397
HP
Sbjct: 1404 HP 1405
>gb|ACL30982.1| mutant DNA dependent RNA polymerase D largest subunit rpd1-8 [Zea
mays]
Length = 1444
Score = 78.2 bits (191), Expect = 1e-12
Identities = 33/62 (53%), Positives = 48/62 (77%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +YP++GY+ E DKS L+EAL++H + AEKIG G+REIK+G +
Sbjct: 1338 WDNIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPS 1397
Query: 392 HP 397
HP
Sbjct: 1398 HP 1399
>ref|NP_001182824.1| DNA dependent RNA polymerase D largest subunit [Zea mays]
gi|219662980|gb|ACL30979.1| DNA dependent RNA polymerase
D largest subunit [Zea mays] gi|414869425|tpg|DAA47982.1|
TPA: putative DNA dependent RNA polymerase D largest
subunit family protein [Zea mays]
gi|414869426|tpg|DAA47983.1| TPA: putative DNA dependent
RNA polymerase D largest subunit family protein [Zea
mays]
Length = 1444
Score = 78.2 bits (191), Expect = 1e-12
Identities = 33/62 (53%), Positives = 48/62 (77%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +YP++GY+ E DKS L+EAL++H + AEKIG G+REIK+G +
Sbjct: 1338 WDNIIDMRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPS 1397
Query: 392 HP 397
HP
Sbjct: 1398 HP 1399
>ref|XP_003566523.1| PREDICTED: DNA-directed RNA polymerase D subunit 1-like [Brachypodium
distachyon]
Length = 1470
Score = 72.8 bits (177), Expect = 4e-11
Identities = 42/130 (32%), Positives = 73/130 (56%)
Frame = +2
Query: 8 QSSTFHGTIDSTDLSASDEDYIEKRFLDRTASNNWKVHYRWLEKSTNGYLKGTQNLGFLY 187
Q+ +G + + ++ +++++E D T + N + + NG GT ++ Y
Sbjct: 1295 QNENIYGFLHNPEVWGPEKNHMET---DSTRTKNASERWSSGNATFNG---GTISVEQNY 1348
Query: 188 KPSDCSVSWTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIRE 367
+ V W ++DM T L+ +L +Y +D Y+ E DKS ++EAL++HP+ EKIG GIR+
Sbjct: 1349 LGAKVGV-WDSIIDMRTCLQNMLREYQLDEYVVELDKSRVIEALRFHPRGREKIGVGIRD 1407
Query: 368 IKVGHSTLHP 397
IK+G HP
Sbjct: 1408 IKIGQHPSHP 1417
>emb|CAD41657.3| OSJNBa0019K04.4 [Oryza sativa Japonica Group]
Length = 1664
Score = 70.5 bits (171), Expect = 2e-10
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +Y ++ + E+DKS LMEAL++HP+ +KIG GIREIK+G +
Sbjct: 1166 WENIIDMRTSLQNMLREYTLNEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPG 1225
Query: 392 HP 397
HP
Sbjct: 1226 HP 1227
>gb|ACR37743.1| unknown [Zea mays]
Length = 101
Score = 70.5 bits (171), Expect = 2e-10
Identities = 31/56 (55%), Positives = 44/56 (78%)
Frame = +2
Query: 230 MGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTLHP 397
M TSL+ +L +YP++GY+ E DKS L+EAL++H + AEKIG G+REIK+G + HP
Sbjct: 1 MRTSLQNMLREYPLNGYVAEPDKSQLIEALKFHSRGAEKIGVGVREIKIGLNPSHP 56
>gb|EEE61535.1| hypothetical protein OsJ_15844 [Oryza sativa Japonica Group]
Length = 1623
Score = 70.5 bits (171), Expect = 2e-10
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +Y ++ + E+DKS LMEAL++HP+ +KIG GIREIK+G +
Sbjct: 1298 WENIIDMRTSLQNMLREYTLNEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPG 1357
Query: 392 HP 397
HP
Sbjct: 1358 HP 1359
>ref|NP_001053609.1| Os04g0572600 [Oryza sativa Japonica Group]
gi|113565180|dbj|BAF15523.1| Os04g0572600 [Oryza sativa
Japonica Group]
Length = 449
Score = 70.5 bits (171), Expect = 2e-10
Identities = 31/62 (50%), Positives = 46/62 (74%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +Y ++ + E+DKS LMEAL++HP+ +KIG GIREIK+G +
Sbjct: 336 WENIIDMRTSLQNMLREYTLNEVVTEQDKSCLMEALKFHPRGYDKIGVGIREIKIGVNPG 395
Query: 392 HP 397
HP
Sbjct: 396 HP 397
>ref|XP_006661522.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1492
Score = 69.3 bits (168), Expect = 5e-10
Identities = 42/116 (36%), Positives = 63/116 (54%), Gaps = 3/116 (2%)
Frame = +2
Query: 59 DEDYIEKRFLD--RTASNNWKVHYRWLEKSTNGYLKGTQNLGFLYKPSDCSVS-WTYVVD 229
D IEK F+D R + + NG + G + + + D V W ++D
Sbjct: 1326 DVQAIEKSFMDTYRQRTEKTSKQRSSFKSEDNGTITGGA-ISVIQEFLDAKVGIWENIID 1384
Query: 230 MGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTLHP 397
M T L+ +L +Y ++ + E+DKS L EAL++HP+ +KIG GIREIKVG + HP
Sbjct: 1385 MRTCLQNMLREYTLNEVVTEQDKSCLKEALKFHPRGYDKIGVGIREIKVGLNPGHP 1440
>gb|EEC77828.1| hypothetical protein OsI_17044 [Oryza sativa Indica Group]
Length = 1598
Score = 68.9 bits (167), Expect = 6e-10
Identities = 30/62 (48%), Positives = 46/62 (74%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +Y ++ + E+DKS L+EAL++HP+ +KIG GIREIK+G +
Sbjct: 1277 WENIIDMRTSLQNMLREYTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPG 1336
Query: 392 HP 397
HP
Sbjct: 1337 HP 1338
>emb|CAH66955.1| OSIGBa0147H17.3 [Oryza sativa Indica Group]
Length = 1407
Score = 68.9 bits (167), Expect = 6e-10
Identities = 30/62 (48%), Positives = 46/62 (74%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM TSL+ +L +Y ++ + E+DKS L+EAL++HP+ +KIG GIREIK+G +
Sbjct: 1294 WENIIDMRTSLQNMLREYTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPG 1353
Query: 392 HP 397
HP
Sbjct: 1354 HP 1355
>ref|XP_006653694.1| PREDICTED: DNA-directed RNA polymerase IV subunit 1-like [Oryza
brachyantha]
Length = 1386
Score = 68.6 bits (166), Expect = 8e-10
Identities = 29/62 (46%), Positives = 46/62 (74%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM T L+ +L +Y ++ + E+DKS L+EAL++HP+ +KIG+GIREIK+G +
Sbjct: 1273 WENIIDMRTCLQNMLREYTLNDIVTEQDKSCLIEALKFHPRGFDKIGAGIREIKIGVNPG 1332
Query: 392 HP 397
HP
Sbjct: 1333 HP 1334
>gb|EMT22317.1| DNA-directed RNA polymerase III subunit RPC1 [Aegilops tauschii]
Length = 1334
Score = 68.2 bits (165), Expect = 1e-09
Identities = 28/62 (45%), Positives = 45/62 (72%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM T L+ +L +Y ++ + E DKS ++EAL++HP+ EKIG+GI++IK+GH
Sbjct: 1224 WDNIIDMRTCLQNMLREYQLNECVVELDKSRVIEALRFHPRGREKIGAGIKDIKIGHHPS 1283
Query: 392 HP 397
HP
Sbjct: 1284 HP 1285
>gb|EMS66983.1| DNA-directed RNA polymerase D subunit 1 [Triticum urartu]
Length = 1402
Score = 68.2 bits (165), Expect = 1e-09
Identities = 28/62 (45%), Positives = 44/62 (70%)
Frame = +2
Query: 212 WTYVVDMGTSLREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTL 391
W ++DM T L+ +L +Y ++ + E DKS ++EAL++HP+ EKIG+GI +IK+GH
Sbjct: 1284 WDSIIDMRTCLQNMLREYQLNECVGELDKSRVIEALRFHPRGREKIGAGIEDIKIGHHPS 1343
Query: 392 HP 397
HP
Sbjct: 1344 HP 1345
>gb|EEE70198.1| hypothetical protein OsJ_30285 [Oryza sativa Japonica Group]
Length = 1384
Score = 67.8 bits (164), Expect = 1e-09
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = +2
Query: 71 IEKRFLDRTASNNWKVHYRWLEKSTNGYLK---GTQNLGFLYKPSDCSVSWTYVVDMGTS 241
+EK F+D K + S+ G GT ++ + S + W ++DM T
Sbjct: 1222 LEKNFMDTYKQRTEKPSKQRSAFSSKGNATINGGTISVNQKFLDSKVGI-WENIIDMRTC 1280
Query: 242 LREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTLHP 397
L+ +L +Y ++ + E+DKS L+EAL++HP+ +KIG GIREIK+G + HP
Sbjct: 1281 LQNMLREYTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHP 1332
>gb|EEC85033.1| hypothetical protein OsI_32338 [Oryza sativa Indica Group]
Length = 1384
Score = 67.8 bits (164), Expect = 1e-09
Identities = 39/112 (34%), Positives = 63/112 (56%), Gaps = 3/112 (2%)
Frame = +2
Query: 71 IEKRFLDRTASNNWKVHYRWLEKSTNGYLK---GTQNLGFLYKPSDCSVSWTYVVDMGTS 241
+EK F+D K + S+ G GT ++ + S + W ++DM T
Sbjct: 1222 LEKNFMDTYKQRTEKPSKQRSAFSSKGNATINGGTISVNQKFLDSKVGI-WENIIDMRTC 1280
Query: 242 LREILHKYPIDGYLDEKDKSSLMEALQYHPKSAEKIGSGIREIKVGHSTLHP 397
L+ +L +Y ++ + E+DKS L+EAL++HP+ +KIG GIREIK+G + HP
Sbjct: 1281 LQNMLREYTLNEVVTEQDKSCLIEALKFHPRGYDKIGVGIREIKIGVNPGHP 1332