BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00043721
         (316 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA22288.1| polyprotein [Oryza australiensis]                      75   9e-12
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...    66   5e-09
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...    64   3e-08
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]      64   3e-08
emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]          62   6e-08
gb|EXC11736.1| hypothetical protein L484_020791 [Morus notabilis]      60   2e-07
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...    60   3e-07
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]      60   3e-07

>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score = 75.1 bits (183), Expect = 9e-12
 Identities = 46/104 (44%), Positives = 52/104 (50%), Gaps = 30/104 (28%)
 Frame = +3

Query: 75  CHHCGEMGHWKRNCKIYLESLKKK--TTS----------------------------DAP 164
           C +C E GHWKRNCK Y+E LKKK  TTS                               
Sbjct: 255 CFYCKETGHWKRNCKKYMEDLKKKQSTTSASGINVIDINLATSPTDSWVFDTGSVAHSCK 314

Query: 165 SASGAKE**KTGQRKGEVNLRVGNGAKVAAIAIGTYLLKLPSGL 296
           S  G +     G R+GEVNLRVGNGA VA +A+GT  L LPSGL
Sbjct: 315 SLQGMRR--SRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGL 356


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
           gi|62701883|gb|AAX92956.1| retrotransposon protein,
           putative, Ty1-copia sub-class [Oryza sativa Japonica
           Group] gi|108864259|gb|ABA92827.2| retrotransposon
           protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1184

 Score = 65.9 bits (159), Expect = 5e-09
 Identities = 42/104 (40%), Positives = 49/104 (47%), Gaps = 30/104 (28%)
 Frame = +3

Query: 75  CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAKE-------------**KTGQ---- 203
           C  C E GHWKRNCK YLE LK+K      S SG                   TG     
Sbjct: 229 CFFCKEAGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTGSVAHI 288

Query: 204 -------------RKGEVNLRVGNGAKVAAIAIGTYLLKLPSGL 296
                         +GEV++RVGNGA+VAA+A+GT  L LPS L
Sbjct: 289 CKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSRL 332


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1142

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 40/104 (38%), Positives = 50/104 (48%), Gaps = 30/104 (28%)
 Frame = +3

Query: 75  CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAK------------------------ 182
           C  C E GHWKRN K YLE LK+K      S SG                          
Sbjct: 305 CFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTESVAHI 364

Query: 183 ----E**KTGQR--KGEVNLRVGNGAKVAAIAIGTYLLKLPSGL 296
               +  K  +   +GEV++RVGNGA+VAA+A+GT  L LPSG+
Sbjct: 365 CKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGI 408


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score = 63.5 bits (153), Expect = 3e-08
 Identities = 40/104 (38%), Positives = 50/104 (48%), Gaps = 30/104 (28%)
 Frame = +3

Query: 75  CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAK------------------------ 182
           C  C E GHWKRN K YLE LK+K      S SG                          
Sbjct: 232 CFFCKETGHWKRNYKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTESVAHI 291

Query: 183 ----E**KTGQR--KGEVNLRVGNGAKVAAIAIGTYLLKLPSGL 296
               +  K  +   +GEV++RVGNGA+VAA+A+GT  L LPSG+
Sbjct: 292 CKSLQGLKRSRSLARGEVDIRVGNGARVAAVAVGTMPLSLPSGI 335


>emb|CAE04999.2| OSJNBb0093G06.7 [Oryza sativa Japonica Group]
          Length = 923

 Score = 62.4 bits (150), Expect = 6e-08
 Identities = 39/99 (39%), Positives = 49/99 (49%), Gaps = 30/99 (30%)
 Frame = +3

Query: 90  EMGHWKRNCKIYLESLKKKTTSDAPSASGAK----------------------------E 185
           E GHWKRNCK YLE LK+K  +   S SG                              +
Sbjct: 217 ETGHWKRNCKKYLEQLKQKQQNGKSSTSGINVIEINLATSSTDSWVFDTGLVAHICKSLQ 276

Query: 186 **KTGQR--KGEVNLRVGNGAKVAAIAIGTYLLKLPSGL 296
             K  +   +GEV++RVGNGA+VA +A+GT  L LPSGL
Sbjct: 277 GLKRSRSLARGEVDIRVGNGARVAVVAVGTMSLSLPSGL 315


>gb|EXC11736.1| hypothetical protein L484_020791 [Morus notabilis]
          Length = 330

 Score = 60.5 bits (145), Expect = 2e-07
 Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 3/69 (4%)
 Frame = +3

Query: 69  GSCHHCGEMGHWKRNCKIYLESLKKKT---TSDAPSASGAKE**KTGQRKGEVNLRVGNG 239
           G C HC   GHWKRNC  YLE LKKK     SD  S S   E        G+  ++VGNG
Sbjct: 157 GKCFHCNGEGHWKRNCHKYLEELKKKKEQGKSDLLSLSSYTE-----LADGDYTMKVGNG 211

Query: 240 AKVAAIAIG 266
           A+V+A A+G
Sbjct: 212 ARVSAKAVG 220


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
           Japonica Group]
          Length = 1073

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 39/104 (37%), Positives = 46/104 (44%), Gaps = 30/104 (28%)
 Frame = +3

Query: 75  CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAKE-------------**KTGQ---- 203
           C    E GHWKRNCK YLE LK+K      S SG                   TG     
Sbjct: 345 CFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTGSVAHI 404

Query: 204 -------------RKGEVNLRVGNGAKVAAIAIGTYLLKLPSGL 296
                         +G V++RVGNG +VA +A+GT  L LPSGL
Sbjct: 405 CKSLQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGL 448


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score = 60.1 bits (144), Expect = 3e-07
 Identities = 39/104 (37%), Positives = 46/104 (44%), Gaps = 30/104 (28%)
 Frame = +3

Query: 75  CHHCGEMGHWKRNCKIYLESLKKKTTSDAPSASGAKE-------------**KTGQ---- 203
           C    E GHWKRNCK YLE LK+K      S SG                   TG     
Sbjct: 345 CFFYKETGHWKRNCKKYLEQLKQKQQDGKSSTSGINVIEINLATSSTDSWVFDTGSVAHI 404

Query: 204 -------------RKGEVNLRVGNGAKVAAIAIGTYLLKLPSGL 296
                         +G V++RVGNG +VA +A+GT  L LPSGL
Sbjct: 405 CKSLQGLKRSRSLARGRVDIRVGNGERVAVVAVGTMTLSLPSGL 448