BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00042764
         (688 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vi...   259   1e-73
gb|ESW20555.1| hypothetical protein PHAVU_006G218900g [Phaseolus...   251   2e-72
gb|ESW20554.1| hypothetical protein PHAVU_006G218900g [Phaseolus...   251   2e-72
gb|EEC68990.1| hypothetical protein OsI_37759 [Oryza sativa Indi...   254   1e-71
ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group] g...   254   1e-71
ref|XP_006663893.1| PREDICTED: tRNA pseudouridine synthase-like ...   257   2e-71
ref|XP_004977156.1| PREDICTED: tRNA pseudouridine synthase-like ...   251   1e-70
ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like ...   247   1e-70
ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycin...   246   6e-70
ref|XP_002441964.1| hypothetical protein SORBIDRAFT_08g005650 [S...   248   8e-70
ref|XP_003578802.1| PREDICTED: tRNA pseudouridine synthase A-lik...   242   7e-69
ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-lik...   244   1e-68
tpg|DAA55515.1| TPA: hypothetical protein ZEAMMB73_032156 [Zea m...   247   3e-68
ref|NP_001146958.1| pseudouridylate synthase [Zea mays] gi|19560...   247   3e-68
ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus ...   236   2e-67
gb|ACN26906.1| unknown [Zea mays]                                     247   4e-67
ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-lik...   236   5e-67
gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]      234   1e-66
gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [...   233   3e-66
gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [...   233   3e-66

>ref|XP_002263416.1| PREDICTED: tRNA pseudouridine synthase A [Vitis vinifera]
           gi|297739525|emb|CBI29707.3| unnamed protein product
           [Vitis vinifera]
          Length = 380

 Score =  259 bits (663), Expect(2) = 1e-73
 Identities = 128/195 (65%), Positives = 155/195 (79%), Gaps = 4/195 (2%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SGPEPLS+FEKDRAWH+ EDLD+LAM+KAC +LVG HDFSSFRA+GCQAKSPI+TLDE
Sbjct: 188 LLSGPEPLSSFEKDRAWHVPEDLDLLAMQKACRVLVGCHDFSSFRAAGCQAKSPIRTLDE 247

Query: 420 LSITETFPSLHFPSLLERSQLESTD----GCLIHSEKSGHGSPPSSLDITWVGLQGCNQG 253
           L ++E  P+ +FPS+ ER+Q   T+     C  ++E     SP ++      G  G  QG
Sbjct: 248 LCVSEVLPTPYFPSITERAQNNFTEENPLACSNNAEVPD--SPSTANHDRLDGFNGAGQG 305

Query: 252 FGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMA 73
           FG + RHRC+++ ARARSFLYHQVRL+VGV+K VGTG+LT+SDVERILNAKTVTAASPMA
Sbjct: 306 FGVRRRHRCFLVTARARSFLYHQVRLLVGVIKCVGTGDLTVSDVERILNAKTVTAASPMA 365

Query: 72  PSCGLYLGNVKYDLP 28
           P+CGLYLGNV YDLP
Sbjct: 366 PACGLYLGNVNYDLP 380



 Score = 43.9 bits (102), Expect(2) = 1e-73
 Identities = 17/24 (70%), Positives = 21/24 (87%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           D+ ++DVRCVP DFHAR+KA ERT
Sbjct: 160 DVMVIDVRCVPPDFHARYKARERT 183


>gb|ESW20555.1| hypothetical protein PHAVU_006G218900g [Phaseolus vulgaris]
          Length = 373

 Score =  251 bits (640), Expect(2) = 2e-72
 Identities = 127/193 (65%), Positives = 153/193 (79%), Gaps = 2/193 (1%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SGPEPLSTFEKDRAWH+SE+L++ AM++AC +LVGSHDFSSFRA+GCQAKSPI+TLDE
Sbjct: 179 LLSGPEPLSTFEKDRAWHVSEELNLPAMQEACRVLVGSHDFSSFRAAGCQAKSPIRTLDE 238

Query: 420 LSITETFPSLHFPSLLERSQLE--STDGCLIHSEKSGHGSPPSSLDITWVGLQGCNQGFG 247
           L+++E   SLHFPS+++R   +  S+D     S       P SS  I  V     + GFG
Sbjct: 239 LNVSEVIESLHFPSVMDREGHDKVSSDPRSYPSNSETDIPPSSSPCIDKVTTSSEDVGFG 298

Query: 246 QKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMAPS 67
           ++ RHRC V+ ARARSFLYHQVRL+VGVLK+VGTG LTI DVERILNAK+VT+ASPMAP+
Sbjct: 299 KRRRHRCLVVTARARSFLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKSVTSASPMAPA 358

Query: 66  CGLYLGNVKYDLP 28
           CGLYLG VKYDLP
Sbjct: 359 CGLYLGEVKYDLP 371



 Score = 48.5 bits (114), Expect(2) = 2e-72
 Identities = 19/24 (79%), Positives = 24/24 (100%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           D++++DVRCVPSDFHAR+KALERT
Sbjct: 151 DLTVIDVRCVPSDFHARYKALERT 174


>gb|ESW20554.1| hypothetical protein PHAVU_006G218900g [Phaseolus vulgaris]
          Length = 372

 Score =  251 bits (640), Expect(2) = 2e-72
 Identities = 127/193 (65%), Positives = 153/193 (79%), Gaps = 2/193 (1%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SGPEPLSTFEKDRAWH+SE+L++ AM++AC +LVGSHDFSSFRA+GCQAKSPI+TLDE
Sbjct: 178 LLSGPEPLSTFEKDRAWHVSEELNLPAMQEACRVLVGSHDFSSFRAAGCQAKSPIRTLDE 237

Query: 420 LSITETFPSLHFPSLLERSQLE--STDGCLIHSEKSGHGSPPSSLDITWVGLQGCNQGFG 247
           L+++E   SLHFPS+++R   +  S+D     S       P SS  I  V     + GFG
Sbjct: 238 LNVSEVIESLHFPSVMDREGHDKVSSDPRSYPSNSETDIPPSSSPCIDKVTTSSEDVGFG 297

Query: 246 QKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMAPS 67
           ++ RHRC V+ ARARSFLYHQVRL+VGVLK+VGTG LTI DVERILNAK+VT+ASPMAP+
Sbjct: 298 KRRRHRCLVVTARARSFLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKSVTSASPMAPA 357

Query: 66  CGLYLGNVKYDLP 28
           CGLYLG VKYDLP
Sbjct: 358 CGLYLGEVKYDLP 370



 Score = 48.5 bits (114), Expect(2) = 2e-72
 Identities = 19/24 (79%), Positives = 24/24 (100%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           D++++DVRCVPSDFHAR+KALERT
Sbjct: 150 DLTVIDVRCVPSDFHARYKALERT 173


>gb|EEC68990.1| hypothetical protein OsI_37759 [Oryza sativa Indica Group]
          Length = 391

 Score =  254 bits (650), Expect(2) = 1e-71
 Identities = 131/195 (67%), Positives = 152/195 (77%), Gaps = 5/195 (2%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SG EPLS FEK  AWHI EDL++ AMKKAC+ILVG HDFSSFRA+GCQA SP++TLDE
Sbjct: 197 LLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSPMRTLDE 256

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHS-----EKSGHGSPPSSLDITWVGLQGCNQ 256
           LS+TE FPS+ FPS +ERS++ES DG L++S     E SG GS  SS         G  +
Sbjct: 257 LSVTEVFPSMFFPSSMERSEMESLDGHLVYSRTSVVESSGKGSDASSTSEQSRFENG--E 314

Query: 255 GFGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPM 76
            FG++ RHRC+V+ ARARSFLYHQVRLMVG+LKSVGTG+LT  DVERILN K VTAA PM
Sbjct: 315 EFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTAAPPM 374

Query: 75  APSCGLYLGNVKYDL 31
           AP+CGLYL NVKYDL
Sbjct: 375 APACGLYLANVKYDL 389



 Score = 42.4 bits (98), Expect(2) = 1e-71
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI + DVRCV  DFHAR+KALERT
Sbjct: 169 DIMVTDVRCVAPDFHARYKALERT 192


>ref|NP_001066352.1| Os12g0194800 [Oryza sativa Japonica Group]
           gi|108862288|gb|ABA96079.2| tRNA pseudouridine synthase
           family protein, putative, expressed [Oryza sativa
           Japonica Group] gi|113648859|dbj|BAF29371.1|
           Os12g0194800 [Oryza sativa Japonica Group]
           gi|215678805|dbj|BAG95242.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|222616774|gb|EEE52906.1| hypothetical protein
           OsJ_35509 [Oryza sativa Japonica Group]
          Length = 391

 Score =  254 bits (650), Expect(2) = 1e-71
 Identities = 131/195 (67%), Positives = 152/195 (77%), Gaps = 5/195 (2%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SG EPLS FEK  AWHI EDL++ AMKKAC+ILVG HDFSSFRA+GCQA SP++TLDE
Sbjct: 197 LLSGSEPLSVFEKTSAWHIPEDLNVQAMKKACSILVGHHDFSSFRATGCQANSPMRTLDE 256

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHS-----EKSGHGSPPSSLDITWVGLQGCNQ 256
           LS+TE FPS+ FPS +ERS++ES DG L++S     E SG GS  SS         G  +
Sbjct: 257 LSVTEVFPSMFFPSSMERSEMESLDGHLVYSRTSVVESSGKGSDASSTSEQSRFENG--E 314

Query: 255 GFGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPM 76
            FG++ RHRC+V+ ARARSFLYHQVRLMVG+LKSVGTG+LT  DVERILN K VTAA PM
Sbjct: 315 EFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTEDVERILNLKAVTAAPPM 374

Query: 75  APSCGLYLGNVKYDL 31
           AP+CGLYL NVKYDL
Sbjct: 375 APACGLYLANVKYDL 389



 Score = 42.4 bits (98), Expect(2) = 1e-71
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI + DVRCV  DFHAR+KALERT
Sbjct: 169 DIMVTDVRCVAPDFHARYKALERT 192


>ref|XP_006663893.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Oryza
           brachyantha]
          Length = 397

 Score =  257 bits (656), Expect(2) = 2e-71
 Identities = 132/197 (67%), Positives = 154/197 (78%), Gaps = 7/197 (3%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SG EPLS FEK  AWHI+EDL++ AMKKAC+ILVG HDFSSFRA+GCQA SP++TLDE
Sbjct: 203 LLSGSEPLSVFEKSSAWHIAEDLNVQAMKKACSILVGHHDFSSFRAAGCQANSPMRTLDE 262

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHS-----EKSGHGSPPSSLDITWVGLQGCNQ 256
           L++TE FPS+ FPS LERS +E  DG LI+S     E SG GS  S+          C  
Sbjct: 263 LTVTEVFPSMFFPSSLERSDMEPLDGPLIYSRTSVVESSGKGSDASNT----TSESRCES 318

Query: 255 G--FGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAAS 82
           G  FG++ RHRC+V+ ARARSFLYHQVRLMVG+LKSVGTG+LT +DVERILN+KTVTAA 
Sbjct: 319 GGEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILNSKTVTAAP 378

Query: 81  PMAPSCGLYLGNVKYDL 31
           PMAP+CGLYL NVKYDL
Sbjct: 379 PMAPACGLYLANVKYDL 395



 Score = 39.3 bits (90), Expect(2) = 2e-71
 Identities = 17/24 (70%), Positives = 19/24 (79%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI + DV CV  DFHAR+KALERT
Sbjct: 175 DIMVTDVCCVAPDFHARYKALERT 198


>ref|XP_004977156.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Setaria
           italica]
          Length = 385

 Score =  251 bits (641), Expect(2) = 1e-70
 Identities = 129/194 (66%), Positives = 149/194 (76%), Gaps = 4/194 (2%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SGPE  S FEK+ AWHISEDLDI AMKKAC+ILVG HDFSSFRA+GCQA SP++TLDE
Sbjct: 190 LLSGPESTSVFEKNSAWHISEDLDIQAMKKACSILVGHHDFSSFRAAGCQANSPMRTLDE 249

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHSEKSG--HGSPPSSLDITWVGLQGCNQG-- 253
           L++TE FP + FPS +ERS++ES+DG LI+S           S    T  G      G  
Sbjct: 250 LNVTEVFPFMFFPSSIERSEMESSDGSLIYSRTPALEPSRKESDDSCTSSGKSESENGKE 309

Query: 252 FGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMA 73
           FG + RHRC+V+ ARARSFLYHQVRLMVG+LKSVGTG+LT +DVERILNAK VTAA PMA
Sbjct: 310 FGSRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILNAKKVTAAPPMA 369

Query: 72  PSCGLYLGNVKYDL 31
           P+CGLYL NVKYDL
Sbjct: 370 PACGLYLANVKYDL 383



 Score = 42.4 bits (98), Expect(2) = 1e-70
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI + DVRCV  DFHAR+KALERT
Sbjct: 162 DIMVTDVRCVAPDFHARYKALERT 185


>ref|XP_003540148.1| PREDICTED: tRNA pseudouridine synthase-like 1-like [Glycine max]
          Length = 369

 Score =  247 bits (630), Expect(2) = 1e-70
 Identities = 127/193 (65%), Positives = 148/193 (76%), Gaps = 2/193 (1%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SGPEPLSTFEKDRAWH+ E+L + AM++AC +LVG HDFSSFRA+GCQAKSPI+TLDE
Sbjct: 175 LLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGCHDFSSFRAAGCQAKSPIRTLDE 234

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIH-SEKSGHGSPP-SSLDITWVGLQGCNQGFG 247
           LS+ E   S +FPSL++R Q     G L   S  +    PP S+  I  V     + GFG
Sbjct: 235 LSVNEVIESPYFPSLMDREQHNKVSGDLRSCSNNTETDIPPISNPSIDKVITSSQDAGFG 294

Query: 246 QKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMAPS 67
           ++ RHRC V+ ARARSFLYHQVRL+VGVLK+ GTG LTI DVERILNAKTVTAASPMAP+
Sbjct: 295 KRRRHRCLVVTARARSFLYHQVRLLVGVLKAAGTGNLTIPDVERILNAKTVTAASPMAPA 354

Query: 66  CGLYLGNVKYDLP 28
           CGLYLG VKYDLP
Sbjct: 355 CGLYLGEVKYDLP 367



 Score = 46.6 bits (109), Expect(2) = 1e-70
 Identities = 19/24 (79%), Positives = 22/24 (91%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           D+ ++DVRCVPSDFHARFKA ERT
Sbjct: 147 DLMVIDVRCVPSDFHARFKAQERT 170


>ref|NP_001242177.1| uncharacterized protein LOC100799818 [Glycine max]
           gi|255637177|gb|ACU18919.1| unknown [Glycine max]
          Length = 370

 Score =  246 bits (629), Expect(2) = 6e-70
 Identities = 124/193 (64%), Positives = 147/193 (76%), Gaps = 2/193 (1%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SGPEPLSTFEKDRAWH+ E+L + AM++AC +LVG HDFSSFRA+GCQAKSPI+TLDE
Sbjct: 176 LLSGPEPLSTFEKDRAWHVPEELSLPAMQEACRVLVGFHDFSSFRAAGCQAKSPIRTLDE 235

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHSEKSGHGS--PPSSLDITWVGLQGCNQGFG 247
           LS+ E   S +FPSL++R Q     G L     +      P S+  I  V     + GFG
Sbjct: 236 LSVNEVIESPYFPSLMDREQHNKVSGDLRSCPNNSETDIPPTSNPSIDKVMASSQDVGFG 295

Query: 246 QKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMAPS 67
           ++ RHRC V+ ARAR+FLYHQVRL+VGVLK+VGTG LTI DVERILNA+TVTAASPMAP+
Sbjct: 296 KRRRHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNARTVTAASPMAPA 355

Query: 66  CGLYLGNVKYDLP 28
           CGLYLG VKYDLP
Sbjct: 356 CGLYLGEVKYDLP 368



 Score = 44.7 bits (104), Expect(2) = 6e-70
 Identities = 18/23 (78%), Positives = 21/23 (91%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALER 620
           D+ ++DVRCVPSDFHARFKA ER
Sbjct: 148 DLMVIDVRCVPSDFHARFKAQER 170


>ref|XP_002441964.1| hypothetical protein SORBIDRAFT_08g005650 [Sorghum bicolor]
           gi|241942657|gb|EES15802.1| hypothetical protein
           SORBIDRAFT_08g005650 [Sorghum bicolor]
          Length = 387

 Score =  248 bits (634), Expect(2) = 8e-70
 Identities = 129/195 (66%), Positives = 152/195 (77%), Gaps = 5/195 (2%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SGPE  S FE + AWHISEDLDI AMKKAC+ILVG HDFSSFRA+GCQA SP++TLDE
Sbjct: 192 LLSGPESTSVFETNSAWHISEDLDIQAMKKACSILVGHHDFSSFRAAGCQANSPMRTLDE 251

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHS-----EKSGHGSPPSSLDITWVGLQGCNQ 256
           LS+TE FP + FPS +ERSQLES++G L++S     E SG GS           L+   +
Sbjct: 252 LSVTEVFPFMFFPSSVERSQLESSNGSLVYSRTPDIESSGKGSDLCCTSSVKSELEN-GE 310

Query: 255 GFGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPM 76
            FG++ RHRC+V+ ARARSFLYHQVRLMVG+LKSVGTG+LT +DVERIL+AKTVTAA  M
Sbjct: 311 DFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPRM 370

Query: 75  APSCGLYLGNVKYDL 31
           AP+ GLYL NVKYDL
Sbjct: 371 APAYGLYLANVKYDL 385



 Score = 42.4 bits (98), Expect(2) = 8e-70
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI + DVRCV  DFHAR+KALERT
Sbjct: 164 DIMVTDVRCVAPDFHARYKALERT 187


>ref|XP_003578802.1| PREDICTED: tRNA pseudouridine synthase A-like [Brachypodium
           distachyon]
          Length = 386

 Score =  242 bits (618), Expect(2) = 7e-69
 Identities = 126/196 (64%), Positives = 151/196 (77%), Gaps = 6/196 (3%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           + SGPE  S FEK+ AWHI EDL+I AMKKAC +LVG HDFSSFRA+GCQAKSP++TLDE
Sbjct: 191 ILSGPERQSVFEKNSAWHIPEDLNIQAMKKACDLLVGHHDFSSFRATGCQAKSPVRTLDE 250

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHS-----EKSGHGS-PPSSLDITWVGLQGCN 259
           L++TE FP + FPS +ERS++ES DG L++S       S  GS  PS+     V   G  
Sbjct: 251 LTVTEVFPFMFFPSSVERSEMESPDGSLVYSRTSLMRASAEGSDAPSTASGKSVSENG-- 308

Query: 258 QGFGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASP 79
           Q FG++ RHRC+V+ ARARSFLYHQVRLMVG+LKSVG G+LT +DVERIL+AK VTAA P
Sbjct: 309 QEFGKRLRHRCFVVTARARSFLYHQVRLMVGLLKSVGIGDLTTADVERILDAKAVTAAPP 368

Query: 78  MAPSCGLYLGNVKYDL 31
           MAP+ GLYL NVKYDL
Sbjct: 369 MAPASGLYLANVKYDL 384



 Score = 45.4 bits (106), Expect(2) = 7e-69
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI + DVRCVP DFHAR+KALERT
Sbjct: 163 DIMVTDVRCVPPDFHARYKALERT 186


>ref|XP_004309887.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca
           subsp. vesca]
          Length = 350

 Score =  244 bits (624), Expect(2) = 1e-68
 Identities = 122/191 (63%), Positives = 152/191 (79%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SGPEPLSTFEKDRAWHI E+LD+LAM++AC ILVG HDFSSFRA+GCQAKSPI+TLDE
Sbjct: 168 LLSGPEPLSTFEKDRAWHIPEELDVLAMQEACKILVGHHDFSSFRAAGCQAKSPIRTLDE 227

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHSEKSGHGSPPSSLDITWVGLQGCNQGFGQK 241
           L+++E   S +FP++ ER++       L+  +     +P +    ++ G  G +QGFG +
Sbjct: 228 LNVSEVVSSPNFPTIAERTRN------LVQKDIQCTNNPEADCHSSFNG--GTDQGFGLR 279

Query: 240 PRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMAPSCG 61
            +HRC V+ ARAR+FLYHQVRL+VGVLK VGTG+L I DVERILNAKTVTAASPMAP+CG
Sbjct: 280 KKHRCIVVTARARAFLYHQVRLLVGVLKCVGTGDLKIPDVERILNAKTVTAASPMAPACG 339

Query: 60  LYLGNVKYDLP 28
           LYLG+V+YDLP
Sbjct: 340 LYLGHVRYDLP 350



 Score = 42.4 bits (98), Expect(2) = 1e-68
 Identities = 18/24 (75%), Positives = 21/24 (87%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           D+ +VDVR VP+DFHARFKA ERT
Sbjct: 140 DVMVVDVRSVPADFHARFKAQERT 163


>tpg|DAA55515.1| TPA: hypothetical protein ZEAMMB73_032156 [Zea mays]
          Length = 443

 Score =  247 bits (631), Expect(2) = 3e-68
 Identities = 126/195 (64%), Positives = 151/195 (77%), Gaps = 5/195 (2%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L +GPE  S FEK+  WHISEDLDI +MKKAC+ILVG HDFSSFRA+GCQA SP++TLDE
Sbjct: 248 LLAGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFRAAGCQANSPVRTLDE 307

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHS-----EKSGHGSPPSSLDITWVGLQGCNQ 256
           LS+TE FP + FPS +ERS+LE ++  L++S     E SG GS  S         +   +
Sbjct: 308 LSVTEVFPFMFFPSSVERSELELSNVSLVYSRKPDMESSGKGSDGSCTSSVKSDFEN-GK 366

Query: 255 GFGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPM 76
            FG++ RHRC+V+ ARARSFLYHQVRLMVG+LKSVGTG+LT +DVERIL+AKTVTAA  M
Sbjct: 367 DFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSM 426

Query: 75  APSCGLYLGNVKYDL 31
           APSCGLYL NVKYDL
Sbjct: 427 APSCGLYLANVKYDL 441



 Score = 38.1 bits (87), Expect(2) = 3e-68
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI + DV CV  DFHAR+K+LERT
Sbjct: 220 DIMVTDVCCVAPDFHARYKSLERT 243


>ref|NP_001146958.1| pseudouridylate synthase [Zea mays] gi|195605848|gb|ACG24754.1|
           pseudouridylate synthase [Zea mays]
          Length = 386

 Score =  247 bits (631), Expect(2) = 3e-68
 Identities = 126/195 (64%), Positives = 151/195 (77%), Gaps = 5/195 (2%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L +GPE  S FEK+  WHISEDLDI +MKKAC+ILVG HDFSSFRA+GCQA SP++TLDE
Sbjct: 191 LLAGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFRAAGCQANSPVRTLDE 250

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHS-----EKSGHGSPPSSLDITWVGLQGCNQ 256
           LS+TE FP + FPS +ERS+LE ++  L++S     E SG GS  S         +   +
Sbjct: 251 LSVTEVFPFMFFPSSVERSELELSNVSLVYSRKPDMESSGKGSDGSCTSSVKSDFEN-GK 309

Query: 255 GFGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPM 76
            FG++ RHRC+V+ ARARSFLYHQVRLMVG+LKSVGTG+LT +DVERIL+AKTVTAA  M
Sbjct: 310 DFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSM 369

Query: 75  APSCGLYLGNVKYDL 31
           APSCGLYL NVKYDL
Sbjct: 370 APSCGLYLANVKYDL 384



 Score = 38.1 bits (87), Expect(2) = 3e-68
 Identities = 16/24 (66%), Positives = 19/24 (79%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI + DV CV  DFHAR+K+LERT
Sbjct: 163 DIMVTDVCCVAPDFHARYKSLERT 186


>ref|XP_002526453.1| pseudouridylate synthase, putative [Ricinus communis]
           gi|223534233|gb|EEF35948.1| pseudouridylate synthase,
           putative [Ricinus communis]
          Length = 372

 Score =  236 bits (603), Expect(2) = 2e-67
 Identities = 120/191 (62%), Positives = 147/191 (76%), Gaps = 2/191 (1%)
 Frame = -2

Query: 594 SGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDELS 415
           SGPEPLSTFEKDRAWH+ EDLDI+AM++AC +LVG HDFSSFRASGCQAKSPI+TL E+S
Sbjct: 182 SGPEPLSTFEKDRAWHVLEDLDIVAMQEACKVLVGHHDFSSFRASGCQAKSPIRTLAEIS 241

Query: 414 ITETFPSLHFPSLLERSQL--ESTDGCLIHSEKSGHGSPPSSLDITWVGLQGCNQGFGQK 241
           ++E   +L+FPS+ ER Q      + C    +        S+ ++        + GFG +
Sbjct: 242 VSEVASTLYFPSITEREQNCENGENSCCKKFKTDLPMGSHSNTNVAESSFGETDLGFGIR 301

Query: 240 PRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMAPSCG 61
            RHRC+V+ ARARSFLYHQVRL+VGVLKSVG G+LT SDVERIL+AK+VTAASPMAP+ G
Sbjct: 302 RRHRCFVVTARARSFLYHQVRLLVGVLKSVGIGDLTTSDVERILSAKSVTAASPMAPARG 361

Query: 60  LYLGNVKYDLP 28
           LYLG+VKYDLP
Sbjct: 362 LYLGHVKYDLP 372



 Score = 46.2 bits (108), Expect(2) = 2e-67
 Identities = 20/24 (83%), Positives = 21/24 (87%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI + DVRCVPSDFHARFKA ERT
Sbjct: 152 DIMVTDVRCVPSDFHARFKAQERT 175


>gb|ACN26906.1| unknown [Zea mays]
          Length = 222

 Score =  247 bits (631), Expect(2) = 4e-67
 Identities = 126/195 (64%), Positives = 151/195 (77%), Gaps = 5/195 (2%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L +GPE  S FEK+  WHISEDLDI +MKKAC+ILVG HDFSSFRA+GCQA SP++TLDE
Sbjct: 27  LLAGPESTSVFEKNSVWHISEDLDIQSMKKACSILVGHHDFSSFRAAGCQANSPVRTLDE 86

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHS-----EKSGHGSPPSSLDITWVGLQGCNQ 256
           LS+TE FP + FPS +ERS+LE ++  L++S     E SG GS  S         +   +
Sbjct: 87  LSVTEVFPFMFFPSSVERSELELSNVSLVYSRKPDMESSGKGSDGSCTSSVKSDFEN-GK 145

Query: 255 GFGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPM 76
            FG++ RHRC+V+ ARARSFLYHQVRLMVG+LKSVGTG+LT +DVERIL+AKTVTAA  M
Sbjct: 146 DFGKRSRHRCFVVTARARSFLYHQVRLMVGLLKSVGTGDLTTADVERILDAKTVTAAPSM 205

Query: 75  APSCGLYLGNVKYDL 31
           APSCGLYL NVKYDL
Sbjct: 206 APSCGLYLANVKYDL 220



 Score = 34.7 bits (78), Expect(2) = 4e-67
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = -1

Query: 679 IVDVRCVPSDFHARFKALERT 617
           + DV CV  DFHAR+K+LERT
Sbjct: 2   VTDVCCVAPDFHARYKSLERT 22


>ref|XP_004485453.1| PREDICTED: tRNA pseudouridine synthase A-like isoform X1 [Cicer
           arietinum]
          Length = 374

 Score =  236 bits (602), Expect(2) = 5e-67
 Identities = 122/195 (62%), Positives = 150/195 (76%), Gaps = 4/195 (2%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SG EPLST EKDRAWH+ E+L++ AM++AC +LVG HDFSSFRA+GCQAKSPI+TLDE
Sbjct: 181 LLSGSEPLSTLEKDRAWHVPEELNLPAMQEACRVLVGHHDFSSFRAAGCQAKSPIRTLDE 240

Query: 420 LSITETFPSLHFPSLLERS-QLESTD---GCLIHSEKSGHGSPPSSLDITWVGLQGCNQG 253
           LS+ E   S +FPS+++R  Q++  D   GC  ++E     S  + +D      +G   G
Sbjct: 241 LSVVEVIQSPYFPSVMDRERQIKVADDLHGCGSNAEAVIPVSSSARIDKVRASNEGV--G 298

Query: 252 FGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMA 73
           FG++  HRC V+ ARAR+FLYHQVRL+VGVLK+VGTG LTI DVERILNAKTVTAASPMA
Sbjct: 299 FGKRRYHRCLVVTARARAFLYHQVRLLVGVLKAVGTGNLTIPDVERILNAKTVTAASPMA 358

Query: 72  PSCGLYLGNVKYDLP 28
           P+CGLYLG VKYDLP
Sbjct: 359 PACGLYLGEVKYDLP 373



 Score = 45.4 bits (106), Expect(2) = 5e-67
 Identities = 18/24 (75%), Positives = 22/24 (91%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           D+ ++DVRCVPSDFHAR+KA ERT
Sbjct: 153 DLMVIDVRCVPSDFHARYKAQERT 176


>gb|ABE79574.2| tRNA pseudouridine synthase [Medicago truncatula]
          Length = 361

 Score =  234 bits (596), Expect(2) = 1e-66
 Identities = 121/193 (62%), Positives = 145/193 (75%), Gaps = 2/193 (1%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SGPE LSTFEKDRAWHI E+L++ AM++AC +LVG HDFSSFRASGCQAKSPI++LDE
Sbjct: 168 LLSGPETLSTFEKDRAWHIPEELNLPAMQEACKVLVGHHDFSSFRASGCQAKSPIRSLDE 227

Query: 420 LSITETFPSLHFPSLLERSQ-LESTDGC-LIHSEKSGHGSPPSSLDITWVGLQGCNQGFG 247
           LS+ E   S +FPS+++R   +  TD     HS         SS  I  V     + GFG
Sbjct: 228 LSVVEVTRSPYFPSVMDRENPINVTDDLHCFHSNSETVIPLGSSARIDEVSASKEDVGFG 287

Query: 246 QKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVTAASPMAPS 67
           ++  HRC V+ ARAR+FLYHQVRL+VGVLK VGTG +T++DVERILNAKTVTA SPMAP+
Sbjct: 288 KRRYHRCLVVTARARAFLYHQVRLLVGVLKDVGTGNITVTDVERILNAKTVTATSPMAPA 347

Query: 66  CGLYLGNVKYDLP 28
           CGLYLG VKYDLP
Sbjct: 348 CGLYLGEVKYDLP 360



 Score = 46.2 bits (108), Expect(2) = 1e-66
 Identities = 18/24 (75%), Positives = 23/24 (95%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           D++++DVRCVPSDFHAR+KA ERT
Sbjct: 140 DLAVIDVRCVPSDFHARYKAQERT 163


>gb|EOX97059.1| Pseudouridine synthase family protein isoform 1 [Theobroma cacao]
          Length = 374

 Score =  233 bits (594), Expect(2) = 3e-66
 Identities = 125/201 (62%), Positives = 147/201 (73%), Gaps = 10/201 (4%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SG EPLSTFEK+RAWH+ E LD+ AM++AC +LVG HDFSSFRA+GCQAKSPI+TLDE
Sbjct: 177 LLSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDE 236

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHSEKSGHGSPPSSLDITW---------VGLQ 268
           L ++E  P+ +FPS+ E+ Q  S+      +E S   S    +D+           VG  
Sbjct: 237 LHVSEAPPTPYFPSISEKKQNNSS------TEDSHACSREPEIDLPIDSFSNSDDEVGSN 290

Query: 267 GCNQ-GFGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVT 91
           G    GFG + RH CYV+ ARARSFLYHQVRL+VGVLK VGTGELT SDVERILNAKTVT
Sbjct: 291 GITDLGFGIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVT 350

Query: 90  AASPMAPSCGLYLGNVKYDLP 28
           AASPMAP+ GLYLG VKYDLP
Sbjct: 351 AASPMAPAYGLYLGCVKYDLP 371



 Score = 45.8 bits (107), Expect(2) = 3e-66
 Identities = 18/24 (75%), Positives = 23/24 (95%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI+++DVRCVP+DFHAR+KA ERT
Sbjct: 149 DITVIDVRCVPNDFHARYKAQERT 172


>gb|EOX97061.1| Pseudouridine synthase family protein isoform 3 [Theobroma cacao]
          Length = 373

 Score =  233 bits (594), Expect(2) = 3e-66
 Identities = 125/201 (62%), Positives = 147/201 (73%), Gaps = 10/201 (4%)
 Frame = -2

Query: 600 LFSGPEPLSTFEKDRAWHISEDLDILAMKKACTILVGSHDFSSFRASGCQAKSPIKTLDE 421
           L SG EPLSTFEK+RAWH+ E LD+ AM++AC +LVG HDFSSFRA+GCQAKSPI+TLDE
Sbjct: 176 LLSGSEPLSTFEKERAWHVPEKLDLYAMQEACKVLVGHHDFSSFRAAGCQAKSPIRTLDE 235

Query: 420 LSITETFPSLHFPSLLERSQLESTDGCLIHSEKSGHGSPPSSLDITW---------VGLQ 268
           L ++E  P+ +FPS+ E+ Q  S+      +E S   S    +D+           VG  
Sbjct: 236 LHVSEAPPTPYFPSISEKKQNNSS------TEDSHACSREPEIDLPIDSFSNSDDEVGSN 289

Query: 267 GCNQ-GFGQKPRHRCYVIAARARSFLYHQVRLMVGVLKSVGTGELTISDVERILNAKTVT 91
           G    GFG + RH CYV+ ARARSFLYHQVRL+VGVLK VGTGELT SDVERILNAKTVT
Sbjct: 290 GITDLGFGIRRRHHCYVVTARARSFLYHQVRLLVGVLKCVGTGELTTSDVERILNAKTVT 349

Query: 90  AASPMAPSCGLYLGNVKYDLP 28
           AASPMAP+ GLYLG VKYDLP
Sbjct: 350 AASPMAPAYGLYLGCVKYDLP 370



 Score = 45.8 bits (107), Expect(2) = 3e-66
 Identities = 18/24 (75%), Positives = 23/24 (95%)
 Frame = -1

Query: 688 DISIVDVRCVPSDFHARFKALERT 617
           DI+++DVRCVP+DFHAR+KA ERT
Sbjct: 148 DITVIDVRCVPNDFHARYKAQERT 171