BLASTX nr result
ID: Zingiber25_contig00042523
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00042523
(432 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY31883.1| Pentatricopeptide repeat-containing protein, puta... 77 2e-12
ref|XP_002866609.1| pentatricopeptide repeat-containing protein ... 75 7e-12
ref|XP_002307901.1| predicted protein [Populus trichocarpa] 72 8e-11
ref|XP_006279545.1| hypothetical protein CARUB_v10028516mg [Caps... 70 4e-10
ref|NP_201237.1| pentatricopeptide repeat-containing protein [Ar... 70 4e-10
ref|XP_004301520.1| PREDICTED: pentatricopeptide repeat-containi... 68 1e-09
ref|XP_006487095.1| PREDICTED: pentatricopeptide repeat-containi... 67 2e-09
ref|XP_006423034.1| hypothetical protein CICLE_v10030202mg [Citr... 67 2e-09
ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containi... 67 3e-09
emb|CBI38482.3| unnamed protein product [Vitis vinifera] 67 3e-09
emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera] 67 3e-09
ref|XP_004508428.1| PREDICTED: pentatricopeptide repeat-containi... 66 6e-09
ref|XP_006836883.1| hypothetical protein AMTR_s00099p00108770 [A... 65 7e-09
ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containi... 64 2e-08
ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containi... 64 2e-08
ref|XP_002510967.1| pentatricopeptide repeat-containing protein,... 64 2e-08
ref|XP_006352878.1| PREDICTED: pentatricopeptide repeat-containi... 63 4e-08
ref|XP_006352876.1| PREDICTED: pentatricopeptide repeat-containi... 63 4e-08
ref|XP_004245911.1| PREDICTED: pentatricopeptide repeat-containi... 63 4e-08
ref|XP_003617308.1| Auxin response factor [Medicago truncatula] ... 63 4e-08
>gb|EOY31883.1| Pentatricopeptide repeat-containing protein, putative isoform 1
[Theobroma cacao] gi|508784628|gb|EOY31884.1|
Pentatricopeptide repeat-containing protein, putative
isoform 1 [Theobroma cacao] gi|508784629|gb|EOY31885.1|
Pentatricopeptide repeat-containing protein, putative
isoform 1 [Theobroma cacao]
Length = 716
Score = 77.4 bits (189), Expect = 2e-12
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = +1
Query: 283 SDGGRMETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
S + E+ENEWE+LLKPF+LDELR S N +TP +LCKLLELP+DVPTSL
Sbjct: 33 SKSNQSESENEWERLLKPFDLDELRKSFNKITPYQLCKLLELPLDVPTSL 82
>ref|XP_002866609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297312444|gb|EFH42868.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 724
Score = 75.5 bits (184), Expect = 7e-12
Identities = 45/89 (50%), Positives = 56/89 (62%), Gaps = 7/89 (7%)
Frame = +1
Query: 187 MLKRIDLA------SVSFHKQTLLRSLSVNFLRRATGGSDGGRM-ETENEWEKLLKPFEL 345
ML R LA S S H+ + S F +GG DGG ++ NEWEKLLKPF+L
Sbjct: 3 MLARSKLALDVSRRSHSLHRISYCAISSSGFC--GSGGDDGGGSPDSSNEWEKLLKPFDL 60
Query: 346 DELRNSMNFLTPARLCKLLELPIDVPTSL 432
D LRNS + +TP +LCKLLELP+DV TS+
Sbjct: 61 DSLRNSFHKITPFQLCKLLELPLDVSTSM 89
>ref|XP_002307901.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 72.0 bits (175), Expect = 8e-11
Identities = 42/88 (47%), Positives = 56/88 (63%), Gaps = 6/88 (6%)
Frame = +1
Query: 187 MLKRIDLASVSFHKQTLLRSLSVN-----FLRRATG-GSDGGRMETENEWEKLLKPFELD 348
MLK LA VS Q +++ S++ F+R+ +G S E EWE+LLKPF+L
Sbjct: 1 MLKGPKLAPVSKTLQIFIKTQSLSLFPSGFVRKFSGFNSKDNESAHETEWERLLKPFDLK 60
Query: 349 ELRNSMNFLTPARLCKLLELPIDVPTSL 432
ELR S N +TP +LCKLLELP+DV TS+
Sbjct: 61 ELRRSFNKITPFQLCKLLELPLDVETSM 88
>ref|XP_006279545.1| hypothetical protein CARUB_v10028516mg [Capsella rubella]
gi|482548249|gb|EOA12443.1| hypothetical protein
CARUB_v10028516mg [Capsella rubella]
Length = 728
Score = 69.7 bits (169), Expect = 4e-10
Identities = 44/91 (48%), Positives = 57/91 (62%), Gaps = 9/91 (9%)
Frame = +1
Query: 187 MLKRIDLA-SVSFHKQTLLRS-----LSVNFLRRAT---GGSDGGRMETENEWEKLLKPF 339
ML R LA +VS Q+LLR LS F G ++ G + NEWEKLLKPF
Sbjct: 3 MLARSKLALNVSRRSQSLLRVSYYAVLSSGFCGGGDDVGGSTENGAAASANEWEKLLKPF 62
Query: 340 ELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
++D LRNS++ +TP +L KLLELP+DV TS+
Sbjct: 63 DIDSLRNSIHKITPFQLYKLLELPLDVSTSM 93
>ref|NP_201237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171655|sp|Q9FMF6.1|PP444_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At5g64320, mitochondrial; Flags: Precursor
gi|9759408|dbj|BAB09863.1| unnamed protein product
[Arabidopsis thaliana] gi|332010486|gb|AED97869.1|
pentatricopeptide repeat-containing protein [Arabidopsis
thaliana]
Length = 730
Score = 69.7 bits (169), Expect = 4e-10
Identities = 48/95 (50%), Positives = 56/95 (58%), Gaps = 13/95 (13%)
Frame = +1
Query: 187 MLKRIDLA-SVSFHKQTLLR-----SLSVNFLRRATGGSDGGRMETE-------NEWEKL 327
ML R LA VS Q+L R SLS F GG DGG E NEWEKL
Sbjct: 3 MLARSKLALDVSRRSQSLQRICYYASLSSRF--SGGGGDDGGGSSPEIGGTDSANEWEKL 60
Query: 328 LKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
LKPF+LD LRNS + +TP +L KLLELP++V TS+
Sbjct: 61 LKPFDLDSLRNSFHKITPFQLYKLLELPLNVSTSM 95
>ref|XP_004301520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Fragaria vesca subsp. vesca]
Length = 711
Score = 68.2 bits (165), Expect = 1e-09
Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Frame = +1
Query: 229 QTLLRS--LSVNFLRRATGGSDGGRMETENEWEKLLKPFELDELRNSMNFLTPARLCKLL 402
Q+L+++ LS +++ GSD E ENEWE+LLKPF+L+ELR S+ +TP +L KLL
Sbjct: 16 QSLIKNPHLSAGYVK----GSDDSGSE-ENEWERLLKPFDLNELRKSLIQITPIQLSKLL 70
Query: 403 ELPIDVPTSL 432
ELP+DVPTSL
Sbjct: 71 ELPLDVPTSL 80
>ref|XP_006487095.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like isoform X1 [Citrus sinensis]
gi|568867543|ref|XP_006487096.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like isoform X2 [Citrus sinensis]
Length = 728
Score = 67.4 bits (163), Expect = 2e-09
Identities = 29/44 (65%), Positives = 39/44 (88%)
Frame = +1
Query: 301 ETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
E+ENEWE+LLKPF+L+ELR S++ +TP +LCKLL LP+DV TS+
Sbjct: 55 ESENEWERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSM 98
>ref|XP_006423034.1| hypothetical protein CICLE_v10030202mg [Citrus clementina]
gi|557524968|gb|ESR36274.1| hypothetical protein
CICLE_v10030202mg [Citrus clementina]
Length = 728
Score = 67.4 bits (163), Expect = 2e-09
Identities = 29/44 (65%), Positives = 39/44 (88%)
Frame = +1
Query: 301 ETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
E+ENEWE+LLKPF+L+ELR S++ +TP +LCKLL LP+DV TS+
Sbjct: 55 ESENEWERLLKPFDLNELRKSLHKITPFQLCKLLRLPLDVDTSM 98
>ref|XP_003635427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Vitis vinifera]
Length = 740
Score = 66.6 bits (161), Expect = 3e-09
Identities = 32/53 (60%), Positives = 39/53 (73%)
Frame = +1
Query: 274 TGGSDGGRMETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
T G D G EWE+LLKPF+L ELR S+ +TP +LCKLLELP+DVPTS+
Sbjct: 66 TNGLDSG-----TEWERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSM 113
>emb|CBI38482.3| unnamed protein product [Vitis vinifera]
Length = 368
Score = 66.6 bits (161), Expect = 3e-09
Identities = 32/53 (60%), Positives = 39/53 (73%)
Frame = +1
Query: 274 TGGSDGGRMETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
T G D G EWE+LLKPF+L ELR S+ +TP +LCKLLELP+DVPTS+
Sbjct: 48 TNGLDSG-----TEWERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSM 95
>emb|CAN67256.1| hypothetical protein VITISV_039434 [Vitis vinifera]
Length = 722
Score = 66.6 bits (161), Expect = 3e-09
Identities = 32/53 (60%), Positives = 39/53 (73%)
Frame = +1
Query: 274 TGGSDGGRMETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
T G D G EWE+LLKPF+L ELR S+ +TP +LCKLLELP+DVPTS+
Sbjct: 48 TNGLDSG-----TEWERLLKPFDLPELRTSLTRITPYQLCKLLELPLDVPTSM 95
>ref|XP_004508428.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like isoform X1 [Cicer arietinum]
gi|502151414|ref|XP_004508429.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like isoform X2 [Cicer arietinum]
gi|502151416|ref|XP_004508430.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like isoform X3 [Cicer arietinum]
gi|502151418|ref|XP_004508431.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like isoform X4 [Cicer arietinum]
Length = 712
Score = 65.9 bits (159), Expect = 6e-09
Identities = 26/44 (59%), Positives = 39/44 (88%)
Frame = +1
Query: 301 ETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
E++ EWE++LKPF+L L+ S+N +TP++LCKLLELP+D+PTS+
Sbjct: 43 ESDTEWERVLKPFDLKHLQRSLNPITPSQLCKLLELPLDIPTSM 86
>ref|XP_006836883.1| hypothetical protein AMTR_s00099p00108770 [Amborella trichopoda]
gi|548839447|gb|ERM99736.1| hypothetical protein
AMTR_s00099p00108770 [Amborella trichopoda]
Length = 712
Score = 65.5 bits (158), Expect = 7e-09
Identities = 30/46 (65%), Positives = 36/46 (78%)
Frame = +1
Query: 295 RMETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
R +ENEWEK+LKPF L+ELR S N +TP RLCKLL LP+D+ SL
Sbjct: 40 RSSSENEWEKILKPFGLEELRKSFNRITPQRLCKLLFLPLDLSLSL 85
>ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 64.3 bits (155), Expect = 2e-08
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Frame = +1
Query: 184 DMLKRIDLASVSFHKQTLL--RSLSVNFLRRATG-GSDGGRMETENE----WEKLLKPFE 342
+++KR S S K +L S +FL G GSD +M E+E WE LL+PF+
Sbjct: 7 NIVKRTKSLSSSESKIIILFENSCKASFLAGNIGDGSDPIKMNVESEPATEWESLLEPFD 66
Query: 343 LDELRNSMNFLTPARLCKLLELPIDVPTSL 432
L +LR S +TP +LCKLLELP+DVPT L
Sbjct: 67 LTKLRKSRILITPVQLCKLLELPLDVPTLL 96
>ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 63.9 bits (154), Expect = 2e-08
Identities = 41/90 (45%), Positives = 54/90 (60%), Gaps = 7/90 (7%)
Frame = +1
Query: 184 DMLKRIDLASVSFHKQTLL--RSLSVNFLRRATG-GSDGGRMETENE----WEKLLKPFE 342
+++KR S S K +L S +FL G GSD +M E+E WE LL+PF+
Sbjct: 7 NIVKRTKSLSSSESKIIILFENSCKASFLAGNIGDGSDPIKMNVESEPATEWESLLEPFD 66
Query: 343 LDELRNSMNFLTPARLCKLLELPIDVPTSL 432
L +LR S +TP +LCKLLELP+DVPT L
Sbjct: 67 LTKLRKSHILITPVQLCKLLELPLDVPTLL 96
>ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223550082|gb|EEF51569.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 774
Score = 63.9 bits (154), Expect = 2e-08
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +1
Query: 301 ETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
E E EWE+LLKPF+L ELR S N +TP +LCKLL LP+DV TS+
Sbjct: 43 ENETEWERLLKPFDLKELRRSFNQITPFQLCKLLLLPLDVSTSM 86
>ref|XP_006352878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like isoform X3 [Solanum tuberosum]
Length = 612
Score = 63.2 bits (152), Expect = 4e-08
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = +1
Query: 289 GGRMETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
G E+ENEWE+LLKPF+ +L+ S+N +TP +L KLL LP+DVPTS+
Sbjct: 42 GDGSESENEWERLLKPFDFKQLQRSLNKITPYQLNKLLALPLDVPTSM 89
>ref|XP_006352876.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like isoform X1 [Solanum tuberosum]
gi|565372595|ref|XP_006352877.1| PREDICTED:
pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like isoform X2 [Solanum tuberosum]
Length = 720
Score = 63.2 bits (152), Expect = 4e-08
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = +1
Query: 289 GGRMETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
G E+ENEWE+LLKPF+ +L+ S+N +TP +L KLL LP+DVPTS+
Sbjct: 42 GDGSESENEWERLLKPFDFKQLQRSLNKITPYQLNKLLALPLDVPTSM 89
>ref|XP_004245911.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Solanum lycopersicum]
Length = 720
Score = 63.2 bits (152), Expect = 4e-08
Identities = 28/48 (58%), Positives = 38/48 (79%)
Frame = +1
Query: 289 GGRMETENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
G E+ENEWE+LLKPF+ +L+ S+N +TP +L KLL LP+DVPTS+
Sbjct: 42 GDGSESENEWERLLKPFDFKQLQRSLNKITPYQLNKLLALPLDVPTSM 89
>ref|XP_003617308.1| Auxin response factor [Medicago truncatula]
gi|355518643|gb|AET00267.1| Auxin response factor
[Medicago truncatula]
Length = 948
Score = 63.2 bits (152), Expect = 4e-08
Identities = 26/42 (61%), Positives = 36/42 (85%)
Frame = +1
Query: 307 ENEWEKLLKPFELDELRNSMNFLTPARLCKLLELPIDVPTSL 432
+ EWE LLKP++L L+ S+N +TP++LCKLLELP+DVPTS+
Sbjct: 37 DTEWENLLKPYDLKHLQRSLNPITPSQLCKLLELPLDVPTSM 78