BLASTX nr result

ID: Zingiber25_contig00042379 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00042379
         (443 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOX94501.1| Lateral organ boundaries domain family protein [T...    61   1e-07
ref|XP_002300786.2| hypothetical protein POPTR_0002s04200g [Popu...    57   3e-06

>gb|EOX94501.1| Lateral organ boundaries domain family protein [Theobroma cacao]
          Length = 250

 Score = 61.2 bits (147), Expect = 1e-07
 Identities = 42/136 (30%), Positives = 66/136 (48%), Gaps = 4/136 (2%)
 Frame = -1

Query: 443 VTLEAQIESLKAQTAQSY--SSTSRLEEDELNNKLPQHHTGELDYLFAREMSITQSSVSD 270
           V L+AQ+ SLK Q AQS    S S     +   K+P H      +      S+      +
Sbjct: 111 VNLQAQLASLKEQAAQSILNGSVSENPNGKYYGKIPSHLQDVQSWFHPDNPSMAPQFNPN 170

Query: 269 TNMNPEVMLHLEDVLLNSNSFQSSQHSYTSY--DNQFSITTDANSSCTVTSLDLQANAMR 96
            + +P    + E   L+  S  + ++S  S   D  F+ TT   +  +++S D+Q N  +
Sbjct: 171 LSNHPNANSYCETGFLDPTSLGNYENSVISSGEDASFTTTTFGETPHSMSSFDMQTNNRQ 230

Query: 95  STYQDMDDLHSVAFGY 48
            T+QD+DDL S+AFGY
Sbjct: 231 WTFQDVDDLQSMAFGY 246


>ref|XP_002300786.2| hypothetical protein POPTR_0002s04200g [Populus trichocarpa]
           gi|550344251|gb|EEE80059.2| hypothetical protein
           POPTR_0002s04200g [Populus trichocarpa]
          Length = 223

 Score = 57.0 bits (136), Expect = 3e-06
 Identities = 41/132 (31%), Positives = 68/132 (51%)
 Frame = -1

Query: 443 VTLEAQIESLKAQTAQSYSSTSRLEEDELNNKLPQHHTGELDYLFAREMSITQSSVSDTN 264
           V L+AQ+ SLK Q AQS+ + S              +  EL   F  E S T   ++  N
Sbjct: 95  VNLQAQLASLKEQAAQSFLNGSATTNPNDKYYGKPSYPQELQSWFHSENSSTVPQLNPNN 154

Query: 263 MNPEVMLHLEDVLLNSNSFQSSQHSYTSYDNQFSITTDANSSCTVTSLDLQANAMRSTYQ 84
           +    M + E+ +++ NS  +  +S +S+D+         +S +++S D+Q + ++ TYQ
Sbjct: 155 LTNN-MPYCENGIMDPNSMGNYGNSSSSFDSF------EEASHSMSSFDMQTDNLQWTYQ 207

Query: 83  DMDDLHSVAFGY 48
             DDL S+AFGY
Sbjct: 208 HADDLQSMAFGY 219


Top