BLASTX nr result
ID: Zingiber25_contig00041030
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00041030
(551 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002454102.1| hypothetical protein SORBIDRAFT_04g024570 [S... 62 7e-08
ref|NP_001047292.1| Os02g0592300 [Oryza sativa Japonica Group] g... 61 2e-07
ref|XP_003575262.1| PREDICTED: mismatch repair endonuclease PMS2... 60 5e-07
ref|XP_006647441.1| PREDICTED: DNA mismatch repair protein PMS1-... 59 8e-07
gb|EMT21505.1| Mismatch repair endonuclease PMS2 [Aegilops tausc... 58 2e-06
gb|AFW62794.1| hypothetical protein ZEAMMB73_304615 [Zea mays] 57 3e-06
dbj|BAJ86879.1| predicted protein [Hordeum vulgare subsp. vulgare] 57 3e-06
>ref|XP_002454102.1| hypothetical protein SORBIDRAFT_04g024570 [Sorghum bicolor]
gi|241933933|gb|EES07078.1| hypothetical protein
SORBIDRAFT_04g024570 [Sorghum bicolor]
Length = 780
Score = 62.4 bits (150), Expect = 7e-08
Identities = 45/125 (36%), Positives = 61/125 (48%), Gaps = 9/125 (7%)
Frame = +3
Query: 180 KELDSRSHEIDES-------VTPLYHPKQLNDFHKISSKIDAKRRNCAKLARNDKTACLG 338
+E DS H E+ P PK+ N F +S + R A + + T
Sbjct: 398 EETDSEDHVSPENQKLPSSVAKPKRLPKEGNSF---ASGTNRFRTGLAAKSTHSST---- 450
Query: 339 LIQSSLTNFLSPNKRKHEDSCNVLSETPLLRNRSC--QVRKCSFGNQTIMSEYSESDQCI 512
IQSSL NF+S NKRKHED C ++SETP+LR +C QVR+ N + + D CI
Sbjct: 451 -IQSSLMNFVSLNKRKHEDDCTLISETPVLRRGTCSEQVRRSLESNFVTPEKQNREDDCI 509
Query: 513 GDGSP 527
+P
Sbjct: 510 ISEAP 514
>ref|NP_001047292.1| Os02g0592300 [Oryza sativa Japonica Group]
gi|50726475|dbj|BAD34084.1| putative PMS2 postmeiotic
segregation increased 2 [Oryza sativa Japonica Group]
gi|113536823|dbj|BAF09206.1| Os02g0592300 [Oryza sativa
Japonica Group] gi|218191082|gb|EEC73509.1| hypothetical
protein OsI_07875 [Oryza sativa Indica Group]
gi|222623151|gb|EEE57283.1| hypothetical protein
OsJ_07338 [Oryza sativa Japonica Group]
Length = 923
Score = 61.2 bits (147), Expect = 2e-07
Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 11/159 (6%)
Frame = +3
Query: 24 DASGEEGPLASSKGLSCEHGDQELSECDP-----PKNVQVKELNKERIFLCEKRSMPKEL 188
D S E+ L + +S D ++ E D P+N +V R+ S PK++
Sbjct: 364 DGSDEDMCLTEKENVSAPENDDDMDETDSDDEVTPENQKVPSSVTTRV---ATGSTPKDV 420
Query: 189 DSRSH----EIDESVTPLYHPKQLNDFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSL 356
S ++D S + + + K + N + K++ +Q S+
Sbjct: 421 SPLSRGPPAQLDRSTLLSAYRYEQREKTPTRVKSYPAQANHVRTGLAAKSSPSSAVQPSI 480
Query: 357 TNFLSPNKRKHEDSCNVLSETPLLRNRSC--QVRKCSFG 467
FLS NKRKHEDSCN++SE P+LR +C QVR+ G
Sbjct: 481 MKFLSQNKRKHEDSCNLISEAPVLRRGTCLEQVRRTDLG 519
>ref|XP_003575262.1| PREDICTED: mismatch repair endonuclease PMS2-like [Brachypodium
distachyon]
Length = 921
Score = 59.7 bits (143), Expect = 5e-07
Identities = 30/47 (63%), Positives = 36/47 (76%), Gaps = 2/47 (4%)
Frame = +3
Query: 342 IQSSLTNFLSPNKRKHEDSCNVLSETPLLRNRSC--QVRKCSFGNQT 476
+QSSL+NFLS NKRKHEDSCN+LSE P+LR +C QVR+ S T
Sbjct: 473 VQSSLSNFLSLNKRKHEDSCNLLSEAPVLRRGTCSGQVRRTSSETST 519
>ref|XP_006647441.1| PREDICTED: DNA mismatch repair protein PMS1-like [Oryza
brachyantha]
Length = 921
Score = 58.9 bits (141), Expect = 8e-07
Identities = 29/62 (46%), Positives = 39/62 (62%), Gaps = 2/62 (3%)
Frame = +3
Query: 288 RRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSCNVLSETPLLRNRSC--QVRKCS 461
R N + K++ +Q S+ NFLS NKRKHEDSCN++SE P+LR +C QVR+
Sbjct: 458 RANQVRTGLATKSSPSSTVQPSIMNFLSQNKRKHEDSCNLISEAPVLRRETCLEQVRRTE 517
Query: 462 FG 467
G
Sbjct: 518 LG 519
>gb|EMT21505.1| Mismatch repair endonuclease PMS2 [Aegilops tauschii]
Length = 1379
Score = 57.8 bits (138), Expect = 2e-06
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Frame = +3
Query: 48 LASSKGLSCEHGDQELSECDPPKNVQVKELNKERIFLCEKRSMPKELDSRSHEIDES--- 218
++S + +C+ D + + DP K+ +V R M S E+D S
Sbjct: 372 VSSPENDNCKE-DTDSDDQDPLKDQKVSSSATRAATGAASRDMSPLPRSPDTEVDRSPWF 430
Query: 219 -VTPLYHPKQLNDFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHED 395
PK+ + K + R N + +++ ++QSSL NFLS NKRKHED
Sbjct: 431 SALRYEQPKR----PRADFKNNPVRENNVRTGLAAQSSPSTIVQSSLMNFLSLNKRKHED 486
Query: 396 SCNVLSETPLLRNRSC--QVRKCS 461
SCN+++E P+LR +C QVR+ S
Sbjct: 487 SCNLITEAPVLRRGTCSGQVRRTS 510
>gb|AFW62794.1| hypothetical protein ZEAMMB73_304615 [Zea mays]
Length = 673
Score = 57.0 bits (136), Expect = 3e-06
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +3
Query: 291 RNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHEDSCNVLSETPLLRNRSC--QVRKCSF 464
RNC + K +QSSL NF+S NKRKHED C ++SE +LR +C +R+ S
Sbjct: 455 RNCFRTGLAAKPTHSSTVQSSLLNFVSLNKRKHEDDCTLISEAAVLRRETCSEHMRRSSL 514
Query: 465 -GNQTIMSEYSESDQCIGDGSP 527
N ++ + D CI SP
Sbjct: 515 EANFVTPNKQNHEDDCIISESP 536
>dbj|BAJ86879.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 780
Score = 57.0 bits (136), Expect = 3e-06
Identities = 45/144 (31%), Positives = 70/144 (48%), Gaps = 6/144 (4%)
Frame = +3
Query: 48 LASSKGLSCEHGDQELSECDPPKNVQVKELNKERIFLCEKRSMPKELDSRSHEIDE---- 215
++S + +C+ D + + DPPK+ +V R M S E+D
Sbjct: 386 VSSPENDNCKE-DTDSDDQDPPKDQKVFSSATRVATGAACRDMSPWTRSPDTEVDRPPWF 444
Query: 216 SVTPLYHPKQLNDFHKISSKIDAKRRNCAKLARNDKTACLGLIQSSLTNFLSPNKRKHED 395
S PK+ + K + R N + +++ ++QSSL NFLS NKRKHED
Sbjct: 445 SALRYEQPKR----PRADCKSNPVRENHVRTGLAAQSSPSTIVQSSLMNFLSLNKRKHED 500
Query: 396 SCNVLSETPLLRNRSC--QVRKCS 461
SCN+++E +LR +C QVR+ S
Sbjct: 501 SCNLITEAQVLRRGTCSGQVRRTS 524