BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00040940
         (689 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   338   7e-91
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     334   1e-89
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc...   330   2e-88
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]     330   2e-88
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc...   328   1e-87
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]     328   1e-87
gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subc...   325   6e-87
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e...   323   2e-86
ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776...   321   2e-85
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja...   320   3e-85
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc...   320   3e-85
gb|AAL83352.1|AC074282_19 Putative polyprotein [Oryza sativa Jap...   315   6e-84
gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subc...   308   1e-81
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc...   305   9e-81
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]     305   9e-81
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap...   297   2e-78
gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       288   1e-75
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc...   287   2e-75
emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]   282   8e-74
gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subc...   281   2e-73

>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  338 bits (868), Expect = 7e-91
 Identities = 164/231 (70%), Positives = 189/231 (81%), Gaps = 2/231 (0%)
 Frame = +2

Query: 2    TLVDPPEGVKPIGCKWVFKRKTDMDG--LIYKGRLVAKGFKQIHGIDYDETFSPVAMFKS 175
            TLVD P+GVKPI CKW+FK+K DMDG   IYK  LVAKG+KQ+HGIDYDET+SPVAM KS
Sbjct: 475  TLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLVAKGYKQVHGIDYDETYSPVAMLKS 534

Query: 176  CGATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGL 355
                  ++     +IWQMDVKTAFLNGNL E VYMTQPEGF  P+   +VCKLHRSIYGL
Sbjct: 535  IRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMTQPEGFTVPEAARKVCKLHRSIYGL 594

Query: 356  KQASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQS 535
            KQASRSWNLRF++AIK+F FI+NE+EPCVYKK  G  V FL+LYVDDILL+G DIP+LQS
Sbjct: 595  KQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGSAVAFLVLYVDDILLLGNDIPLLQS 654

Query: 536  VKTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            VKTWLGSCFSMKD+GEA+ IL I+IYRDR  +++GLSQ TYIDK L RF M
Sbjct: 655  VKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGLSQDTYIDKVLHRFNM 705


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  334 bits (857), Expect = 1e-89
 Identities = 167/230 (72%), Positives = 188/230 (81%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDPP+GVK I CKW+FK+K DMDG   IYK RLVAKGFKQI G+DYDETFSPVAM KS 
Sbjct: 829  LVDPPDGVKTIECKWLFKKKADMDGNVHIYKARLVAKGFKQIQGVDYDETFSPVAMLKSI 888

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQMDVKTAFLNGNL EDVYM QP+GFVDP+   ++CKL +SIYGLK
Sbjct: 889  RIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVYMIQPQGFVDPESPGKICKLQKSIYGLK 948

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ IK FGFIKNE+E CVYKKV G  +VFLILYVDDILLIG DIPML+SV
Sbjct: 949  QASRSWNIRFDEVIKGFGFIKNEEEACVYKKVSGSAIVFLILYVDDILLIGNDIPMLESV 1008

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            K+ L + FSMKDLGEA+ IL I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 1009 KSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNM 1058


>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1248

 Score =  330 bits (847), Expect = 2e-88
 Identities = 163/230 (70%), Positives = 186/230 (80%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDPP+GVK I CKW+FK+ TD+DG   IY  RLVAKGF+QI G+DYDETFSPVAM KS 
Sbjct: 778  LVDPPDGVKAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSI 837

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQMDVKTAFLNGNL EDVYMTQP+GFVDPQ   ++CKL +SIY LK
Sbjct: 838  RIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLK 897

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ +K  GF+KNE+EPCVYKK+ G  +VFLILYVDDILLIG DIPML+SV
Sbjct: 898  QASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESV 957

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            KT L   FSMKDLGEA+ IL I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 958  KTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNM 1007


>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1161

 Score =  330 bits (847), Expect = 2e-88
 Identities = 163/230 (70%), Positives = 186/230 (80%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDPP+GVK I CKW+FK+ TD+DG   IY  RLVAKGF+QI G+DYDETFSPVAM KS 
Sbjct: 691  LVDPPDGVKAIECKWIFKKMTDVDGTVHIYNARLVAKGFRQIQGVDYDETFSPVAMLKSI 750

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQMDVKTAFLNGNL EDVYMTQP+GFVDPQ   ++CKL +SIY LK
Sbjct: 751  RIVLAIAAYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYRLK 810

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ +K  GF+KNE+EPCVYKK+ G  +VFLILYVDDILLIG DIPML+SV
Sbjct: 811  QASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESV 870

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            KT L   FSMKDLGEA+ IL I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 871  KTSLKYSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNM 920


>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1073

 Score =  328 bits (841), Expect = 1e-87
 Identities = 164/230 (71%), Positives = 187/230 (81%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDPP+GVK I CKWVFK+KTD+DG   IYK RLVAKGF+QI G+DYDETFSPVAM KS 
Sbjct: 759  LVDPPDGVKAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSI 818

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQM+VKTAFLNGN  EDVYMTQP+GFVD Q    +CKL +SIYGLK
Sbjct: 819  RIVLAIAAYFDYEIWQMEVKTAFLNGNHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGLK 878

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ +K  GF+KNE+EPCVYKK+ G  +VFLILYVDDILLIG DIPML+SV
Sbjct: 879  QASRSWNIRFDELVKALGFLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESV 938

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            KT L + FSMKDLGEA+ IL I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 939  KTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKMLKRFNM 988


>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1063

 Score =  328 bits (841), Expect = 1e-87
 Identities = 164/230 (71%), Positives = 187/230 (81%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDPP+GVK I CKWVFK+KTD+DG   IYK RLVAKGF+QI G+DYDETFSPVAM KS 
Sbjct: 749  LVDPPDGVKAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSI 808

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQM+VKTAFLNGN  EDVYMTQP+GFVD Q    +CKL +SIYGLK
Sbjct: 809  RIVLAIAAYFDYEIWQMEVKTAFLNGNHDEDVYMTQPKGFVDLQSAKMICKLQKSIYGLK 868

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ +K  GF+KNE+EPCVYKK+ G  +VFLILYVDDILLIG DIPML+SV
Sbjct: 869  QASRSWNIRFDELVKALGFLKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESV 928

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            KT L + FSMKDLGEA+ IL I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 929  KTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKMLKRFNM 978


>gb|ABA97705.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 810

 Score =  325 bits (834), Expect = 6e-87
 Identities = 161/230 (70%), Positives = 185/230 (80%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDPP+GVK I CKWVFK+ TD+DG   IYK RLVAKGF+QI G+DYDETFSPVAM KS 
Sbjct: 535  LVDPPDGVKAIKCKWVFKKNTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSI 594

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQMDVKTA LNGNL EDVYMTQP+GFVDPQ   ++CKL +SIYGLK
Sbjct: 595  RIVLTIAAYFDYEIWQMDVKTALLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLK 654

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            +ASRSWN+RFD  +K  GF+KNE+EPCVYKK+ G  +VFLILYVD+ILLIG DIPML+SV
Sbjct: 655  KASRSWNIRFDKVVKALGFVKNEEEPCVYKKISGSALVFLILYVDEILLIGNDIPMLESV 714

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            KT L + F MKDLGE + IL I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 715  KTSLKNSFLMKDLGEPTCILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNM 764


>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
          Length = 1313

 Score =  323 bits (829), Expect = 2e-86
 Identities = 161/230 (70%), Positives = 187/230 (81%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDP +GVK I CKW++K+K DMDG   I+K RLVAKGF+Q+ G+DYDETFS VAM KS 
Sbjct: 825  LVDPLDGVKTIECKWIYKKKIDMDGNVHIHKARLVAKGFRQVQGVDYDETFSLVAMLKSI 884

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQMDVKTAFLNG L EDVYMTQPEGFVDP + S+VCKL +SIYGLK
Sbjct: 885  RIILAIAAYFDYEIWQMDVKTAFLNGKLSEDVYMTQPEGFVDPNNASKVCKLQKSIYGLK 944

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ IK+FGF+KN++EPCVY KV G  +V LILYVDDILLIG DIPML+SV
Sbjct: 945  QASRSWNIRFDEEIKRFGFVKNKEEPCVYMKVSGSTLVILILYVDDILLIGNDIPMLESV 1004

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            K  L + FSMKDLGEA+ IL IKIYRDRS+RL+GLSQSTYIDK L+RF M
Sbjct: 1005 KASLKNSFSMKDLGEAAYILGIKIYRDRSRRLIGLSQSTYIDKVLIRFNM 1054


>ref|XP_004978922.1| PREDICTED: uncharacterized protein LOC101776990, partial [Setaria
           italica]
          Length = 1686

 Score =  321 bits (822), Expect = 2e-85
 Identities = 160/230 (69%), Positives = 184/230 (80%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5   LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
           LVDPP+GVK I CKW++K+K DMDG   IYK RLVAKGF+Q+ G+DYDETFSPV M KS 
Sbjct: 240 LVDPPDGVKAIECKWIYKKKKDMDGNVHIYKARLVAKGFRQVQGVDYDETFSPVVMLKSI 299

Query: 179 GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                 +     +IWQMDVKTAFLNGNL +DVYM QPEGFVDP++  +VCKL RSIYGLK
Sbjct: 300 RIILAIAAYFDYEIWQMDVKTAFLNGNLAKDVYMIQPEGFVDPKNAGKVCKLQRSIYGLK 359

Query: 359 QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
           QASRSWN+RFD+ +K F F KNE+E CVYKKV G  VVFLILYVDDILLIG +I ML+SV
Sbjct: 360 QASRSWNIRFDEVVKGFDFTKNEEESCVYKKVSGSSVVFLILYVDDILLIGNNILMLESV 419

Query: 539 KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
           KT L + FSM DLGEA+ IL IKIYRDRS+RL+GLSQ TYIDK L RF+M
Sbjct: 420 KTSLKNSFSMMDLGEAAYILGIKIYRDRSRRLIGLSQDTYIDKVLKRFSM 469


>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
          Length = 700

 Score =  320 bits (819), Expect = 3e-85
 Identities = 158/224 (70%), Positives = 185/224 (82%), Gaps = 2/224 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDP + VK I CKWVFK+KTD+DG   IYK RLVAKGF+QI G++YDETFSPVAM KS 
Sbjct: 383  LVDPLDSVKAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSI 442

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQMDVKTAFL+GNL EDVYMTQP+GFVDPQ   ++CKL +SIYGLK
Sbjct: 443  RIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLK 502

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ IK  GF+KNE+EPCVYKK+ G  ++FLILYVDDILLIG DIPML+SV
Sbjct: 503  QASRSWNIRFDEVIKALGFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLESV 562

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKA 670
            KT L + FSMKDLGEA+ IL I+IYRDRSKRL+GLSQSTYI+K+
Sbjct: 563  KTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYINKS 606


>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 655

 Score =  320 bits (819), Expect = 3e-85
 Identities = 158/224 (70%), Positives = 185/224 (82%), Gaps = 2/224 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDP + VK I CKWVFK+KTD+DG   IYK RLVAKGF+QI G++YDETFSPVAM KS 
Sbjct: 338  LVDPLDSVKAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVNYDETFSPVAMLKSI 397

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQMDVKTAFL+GNL EDVYMTQP+GFVDPQ   ++CKL +SIYGLK
Sbjct: 398  RIVLAIAAYFDYEIWQMDVKTAFLSGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLK 457

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ IK  GF+KNE+EPCVYKK+ G  ++FLILYVDDILLIG DIPML+SV
Sbjct: 458  QASRSWNIRFDEVIKALGFVKNEEEPCVYKKINGSALMFLILYVDDILLIGNDIPMLESV 517

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKA 670
            KT L + FSMKDLGEA+ IL I+IYRDRSKRL+GLSQSTYI+K+
Sbjct: 518  KTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYINKS 561


>gb|AAL83352.1|AC074282_19 Putative polyprotein [Oryza sativa Japonica Group]
           gi|22711524|gb|AAN04499.1| Putative polyprotein [Oryza
           sativa Japonica Group] gi|31429946|gb|AAP51930.1|
           retrotransposon protein, putative, Ty1-copia subclass
           [Oryza sativa Japonica Group]
          Length = 309

 Score =  315 bits (808), Expect = 6e-84
 Identities = 156/230 (67%), Positives = 187/230 (81%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5   LVDPPEGVKPIGCKWVFKRKTDMDG--LIYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
           L+DPP+GVK I CKWVFK+KTD+DG   IYK RLVAKGF+QI G+DYDETFSPV M KS 
Sbjct: 16  LLDPPDGVKAIECKWVFKKKTDVDGNIQIYKTRLVAKGFRQIQGVDYDETFSPVTMLKSI 75

Query: 179 GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                 +   + +IW ++VK AFLNG+L EDVYMTQP+GF DPQ   ++CKLH+SIYGLK
Sbjct: 76  QIVLAIAAYFNYEIWLVNVKIAFLNGDLNEDVYMTQPKGFGDPQSAKKICKLHKSIYGLK 135

Query: 359 QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
           QAS SW++RFD+ +K  GF+KNE+EP VYKK+ G+ +VFLILYVDDILLIG DIPML+SV
Sbjct: 136 QASWSWDIRFDEVVKALGFVKNEEEPRVYKKISGNALVFLILYVDDILLIGNDIPMLESV 195

Query: 539 KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
           KT L + FS+KDLGEA+ IL I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 196 KTSLKNSFSVKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNM 245


>gb|ABA99022.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 829

 Score =  308 bits (788), Expect = 1e-81
 Identities = 152/216 (70%), Positives = 176/216 (81%), Gaps = 2/216 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDPP+GVK I CKWVFK+KTD+DG   IYK RLVAKGF+QI G+DYDETFSP AM KS 
Sbjct: 614  LVDPPDGVKAIECKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPFAMLKSI 673

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +   + +IWQMDVKT FLNGNL EDVYMTQP+GFVDPQ   ++CKL +SIYGLK
Sbjct: 674  RIVLAIAAYFNYEIWQMDVKTTFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLK 733

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ +K   F+KNE+EPCVYKK+ G  +VFLILYVDDILLIG DI ML+SV
Sbjct: 734  QASRSWNIRFDEVVKALRFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDILMLESV 793

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLS 646
            KT L + FSMKDLGEA+ IL I+IYRDRSKRL+GLS
Sbjct: 794  KTSLKNRFSMKDLGEAAYILGIRIYRDRSKRLIGLS 829


>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1142

 Score =  305 bits (781), Expect = 9e-81
 Identities = 151/223 (67%), Positives = 176/223 (78%), Gaps = 2/223 (0%)
 Frame = +2

Query: 26   VKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSCGATTFSS 199
            ++ I CKW FK+KTD+DG   IYK RLVAKGF+QI G+DYDETF PVAM KS       +
Sbjct: 759  LRAIECKWFFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIA 818

Query: 200  RTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLKQASRSWN 379
                 +IWQMDVKTAFLNGNL EDVYMTQP+GFVDPQ   ++CKL +SIYGLKQASRSWN
Sbjct: 819  AYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWN 878

Query: 380  LRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSVKTWLGSC 559
            +RFD+ +K  GF+KNE+ PCVYKK+ G  +VFLILYVDDILLIG DIPML+SV   L + 
Sbjct: 879  IRFDEVVKALGFVKNEEVPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVNISLKNS 938

Query: 560  FSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            FSMKDLGEA+ IL I+IYRD SKRL+GLS+STYIDK L  F M
Sbjct: 939  FSMKDLGEAAYILGIRIYRDGSKRLIGLSESTYIDKVLKMFNM 981


>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
          Length = 1084

 Score =  305 bits (781), Expect = 9e-81
 Identities = 151/223 (67%), Positives = 176/223 (78%), Gaps = 2/223 (0%)
 Frame = +2

Query: 26   VKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSCGATTFSS 199
            ++ I CKW FK+KTD+DG   IYK RLVAKGF+QI G+DYDETF PVAM KS       +
Sbjct: 701  LRAIECKWFFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFLPVAMLKSIRIVLAIA 760

Query: 200  RTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLKQASRSWN 379
                 +IWQMDVKTAFLNGNL EDVYMTQP+GFVDPQ   ++CKL +SIYGLKQASRSWN
Sbjct: 761  AYFDYEIWQMDVKTAFLNGNLDEDVYMTQPKGFVDPQSAKKICKLQKSIYGLKQASRSWN 820

Query: 380  LRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSVKTWLGSC 559
            +RFD+ +K  GF+KNE+ PCVYKK+ G  +VFLILYVDDILLIG DIPML+SV   L + 
Sbjct: 821  IRFDEVVKALGFVKNEEVPCVYKKISGSALVFLILYVDDILLIGNDIPMLESVNISLKNS 880

Query: 560  FSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            FSMKDLGEA+ IL I+IYRD SKRL+GLS+STYIDK L  F M
Sbjct: 881  FSMKDLGEAAYILGIRIYRDGSKRLIGLSESTYIDKVLKMFNM 923


>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
            gi|62701883|gb|AAX92956.1| retrotransposon protein,
            putative, Ty1-copia sub-class [Oryza sativa Japonica
            Group] gi|108864259|gb|ABA92827.2| retrotransposon
            protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1184

 Score =  297 bits (761), Expect = 2e-78
 Identities = 149/213 (69%), Positives = 172/213 (80%), Gaps = 2/213 (0%)
 Frame = +2

Query: 56   KRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSCGATTFSSRTSSTQIWQM 229
            K+KTD+DG   IYK RLVAKGF+QI G+DYDETFSPVAM K        +     +IWQM
Sbjct: 717  KKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKFIWIVLAIAAYFDYEIWQM 776

Query: 230  DVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLKQASRSWNLRFDDAIKQF 409
             VKTAFLNGNL EDVYMTQP+GF DPQ   ++CKLH+SIYGLKQASRSWN+RFD+ +K  
Sbjct: 777  YVKTAFLNGNLDEDVYMTQPKGFDDPQSAKKICKLHQSIYGLKQASRSWNIRFDEVVKAL 836

Query: 410  GFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSVKTWLGSCFSMKDLGEAS 589
            GF++NE+EPCVYKK+ G  +VFLILYVDDILLIG DI ML+SVKT L + FSMKDLGEA+
Sbjct: 837  GFVRNEEEPCVYKKISGSALVFLILYVDDILLIGNDISMLESVKTSLKNSFSMKDLGEAA 896

Query: 590  RILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
             IL I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 897  YILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNM 929


>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  288 bits (736), Expect = 1e-75
 Identities = 141/231 (61%), Positives = 169/231 (73%), Gaps = 2/231 (0%)
 Frame = +2

Query: 2    TLVDPPEGVKPIGCKWVFKRKTDMDGLI--YKGRLVAKGFKQIHGIDYDETFSPVAMFKS 175
            TLVD P  VKPIGCKW++KRK D  G +  +K RLVAKG+ Q  G+DY+ETFSPVAM KS
Sbjct: 838  TLVDLPSDVKPIGCKWIYKRKRDQAGKVQTFKARLVAKGYTQKEGVDYEETFSPVAMLKS 897

Query: 176  CGATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGL 355
                   +   + +IWQMDVKTAFLNGNL E +YM QPEGF+      +VCKL +SIYGL
Sbjct: 898  IRILLSIATFYNYEIWQMDVKTAFLNGNLEESIYMVQPEGFIAQDQEQKVCKLQKSIYGL 957

Query: 356  KQASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQS 535
            KQASRSWN+RFD AIK +GF +N DEPCVYKK+V  +V FLILYVDDILLIG D+  L  
Sbjct: 958  KQASRSWNIRFDTAIKSYGFEQNVDEPCVYKKIVNSVVAFLILYVDDILLIGNDVEYLTD 1017

Query: 536  VKTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            VK WL + F MKDLGEA  IL I+I R+R  + L +SQ++YIDK L R+ M
Sbjct: 1018 VKKWLNTQFQMKDLGEAQYILGIQIVRNRKNKTLAMSQASYIDKVLSRYKM 1068


>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1745

 Score =  287 bits (734), Expect = 2e-75
 Identities = 150/230 (65%), Positives = 171/230 (74%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDPP+GVK I CKWVFK+KT +DG   IYK RLVAKGF+QI G+DYDETFSPVAM KS 
Sbjct: 1315 LVDPPDGVKAIECKWVFKKKTYVDGNVHIYKARLVAKGFRQIQGVDYDETFSPVAMLKSI 1374

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQMDVKTAFLNGNL ED                      +SIYGLK
Sbjct: 1375 QIVLAIAAYFDYEIWQMDVKTAFLNGNLDED----------------------KSIYGLK 1412

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ +K  GF+KNE+EPCVYKK+ G  +VFLILYVDDILLIG DIPML+SV
Sbjct: 1413 QASRSWNIRFDEVVKALGFVKNEEEPCVYKKISGSALVFLILYVDDILLIGNDIPMLESV 1472

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            KT L + FSMKDLGEA+ I+ I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 1473 KTSLKNSFSMKDLGEAAYIMGIRIYRDRSKRLIGLSQSTYIDKVLKRFNM 1522


>emb|CAN69397.1| hypothetical protein VITISV_021035 [Vitis vinifera]
          Length = 668

 Score =  282 bits (721), Expect = 8e-74
 Identities = 141/230 (61%), Positives = 168/230 (73%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5   LVDPPEGVKPIGCKWVFKRKTDMDGLI--YKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
           LVD PEG+KPIGCKW++K K   +G +  +K RLVAKGF Q  G+DY++TFSPV M KS 
Sbjct: 179 LVDLPEGIKPIGCKWIYKXKRGPNGKVETFKARLVAKGFTQKEGVDYEDTFSPVXMLKSI 238

Query: 179 GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                       +IWQMDVKT FLNG+L E +YM QPEGFV      +VCKL RSIYGLK
Sbjct: 239 RILLSIXAYYDYEIWQMDVKTXFLNGHLEETIYMVQPEGFVVKDQEQKVCKLQRSIYGLK 298

Query: 359 QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
           QASRSWN+ F++AIK +GF +N  EPCVYK++ GD VVFL+LYVDDILLIG D+  L  V
Sbjct: 299 QASRSWNIIFNEAIKSYGFEQNLGEPCVYKQIGGDKVVFLVLYVDDILLIGNDVESLSKV 358

Query: 539 KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
           K WL S F MKDLGEAS IL I++ RDR  RLL LSQ+ YIDK L++FAM
Sbjct: 359 KNWLASQFQMKDLGEASYILGIQMTRDRKNRLLALSQAAYIDKVLVKFAM 408


>gb|ABA97342.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
            Japonica Group]
          Length = 1050

 Score =  281 bits (718), Expect = 2e-73
 Identities = 147/230 (63%), Positives = 171/230 (74%), Gaps = 2/230 (0%)
 Frame = +2

Query: 5    LVDPPEGVKPIGCKWVFKRKTDMDGL--IYKGRLVAKGFKQIHGIDYDETFSPVAMFKSC 178
            LVDPP+GVK I  KWVFK+KTD+DG   IYK RLVAKGF+QI G+DYDETFS VAM KS 
Sbjct: 577  LVDPPDGVKAIEWKWVFKKKTDVDGNVHIYKARLVAKGFRQIQGVDYDETFSLVAMLKSI 636

Query: 179  GATTFSSRTSSTQIWQMDVKTAFLNGNLLEDVYMTQPEGFVDPQHTSRVCKLHRSIYGLK 358
                  +     +IWQMDVKTAF+NGN+ EDVYMTQ +GFVDPQ   ++CKL +SIYGLK
Sbjct: 637  QIVLAITAYFDYEIWQMDVKTAFVNGNIDEDVYMTQLKGFVDPQSAKKICKLQKSIYGLK 696

Query: 359  QASRSWNLRFDDAIKQFGFIKNEDEPCVYKKVVGDIVVFLILYVDDILLIGKDIPMLQSV 538
            QASRSWN+RFD+ +K +   K +                L+LYVDDILLIG DIPML+SV
Sbjct: 697  QASRSWNIRFDEVVKAWALSKTKKS--------------LVLYVDDILLIGNDIPMLESV 742

Query: 539  KTWLGSCFSMKDLGEASRILSIKIYRDRSKRLLGLSQSTYIDKALLRFAM 688
            KT L + FSMKDLGEA+ IL I+IYRDRSKRL+GLSQSTYIDK L RF M
Sbjct: 743  KTSLKNSFSMKDLGEAAYILGIRIYRDRSKRLIGLSQSTYIDKVLKRFNM 792