BLASTX nr result
ID: Zingiber25_contig00040208
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00040208
(284 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EOY09621.1| Cleavage and polyadenylation specificity factor (... 77 2e-12
gb|EOY09620.1| Cleavage and polyadenylation specificity factor (... 77 2e-12
gb|EOY09619.1| Cleavage and polyadenylation specificity factor (... 77 2e-12
gb|EOY09618.1| Cleavage and polyadenylation specificity factor (... 77 2e-12
ref|XP_006481687.1| PREDICTED: uncharacterized protein LOC102624... 74 2e-11
ref|XP_006481686.1| PREDICTED: uncharacterized protein LOC102624... 74 2e-11
ref|XP_006481685.1| PREDICTED: uncharacterized protein LOC102624... 74 2e-11
ref|XP_003638090.1| DNA damage-binding protein, partial [Medicag... 74 2e-11
ref|XP_006429954.1| hypothetical protein CICLE_v10011020mg [Citr... 74 3e-11
ref|XP_003638105.1| Pre-mRNA-splicing factor rse1 [Medicago trun... 73 4e-11
ref|XP_003638096.1| DNA damage-binding protein, partial [Medicag... 73 4e-11
ref|XP_004494302.1| PREDICTED: uncharacterized protein LOC101490... 72 8e-11
ref|XP_004494300.1| PREDICTED: uncharacterized protein LOC101490... 72 8e-11
ref|XP_004303372.1| PREDICTED: pre-mRNA-splicing factor rse-1-li... 72 8e-11
ref|XP_002308344.2| hypothetical protein POPTR_0006s21160g [Popu... 70 2e-10
ref|XP_006407388.1| hypothetical protein EUTSA_v10019900mg [Eutr... 69 5e-10
ref|XP_004955777.1| PREDICTED: splicing factor 3B subunit 3-like... 68 1e-09
ref|XP_004955775.1| PREDICTED: splicing factor 3B subunit 3-like... 68 1e-09
ref|XP_004955774.1| PREDICTED: splicing factor 3B subunit 3-like... 68 1e-09
gb|EMJ05498.1| hypothetical protein PRUPE_ppa000262mg [Prunus pe... 67 2e-09
>gb|EOY09621.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
protein isoform 4 [Theobroma cacao]
Length = 1127
Score = 77.4 bits (189), Expect = 2e-12
Identities = 33/79 (41%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQ-TKGYNPLMAIIMNRKGSLM 59
++I+YPPE++ S+ R + +RGTIWSMCF+S ++Q K +NP++AI++NRKG+ +
Sbjct: 84 ERIFYPPENEGSVSSTRSAQRTSIRGTIWSMCFVSKDSFQPNKEHNPVLAIVLNRKGNAL 143
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+L+L G + R + ++S
Sbjct: 144 NELVLLGWNIKERAVYVVS 162
>gb|EOY09620.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
protein isoform 3 [Theobroma cacao]
Length = 1254
Score = 77.4 bits (189), Expect = 2e-12
Identities = 33/79 (41%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQ-TKGYNPLMAIIMNRKGSLM 59
++I+YPPE++ S+ R + +RGTIWSMCF+S ++Q K +NP++AI++NRKG+ +
Sbjct: 192 ERIFYPPENEGSVSSTRSAQRTSIRGTIWSMCFVSKDSFQPNKEHNPVLAIVLNRKGNAL 251
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+L+L G + R + ++S
Sbjct: 252 NELVLLGWNIKERAVYVVS 270
>gb|EOY09619.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
protein isoform 2, partial [Theobroma cacao]
Length = 1237
Score = 77.4 bits (189), Expect = 2e-12
Identities = 33/79 (41%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQ-TKGYNPLMAIIMNRKGSLM 59
++I+YPPE++ S+ R + +RGTIWSMCF+S ++Q K +NP++AI++NRKG+ +
Sbjct: 104 ERIFYPPENEGSVSSTRSAQRTSIRGTIWSMCFVSKDSFQPNKEHNPVLAIVLNRKGNAL 163
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+L+L G + R + ++S
Sbjct: 164 NELVLLGWNIKERAVYVVS 182
>gb|EOY09618.1| Cleavage and polyadenylation specificity factor (CPSF) A subunit
protein isoform 1 [Theobroma cacao]
Length = 1391
Score = 77.4 bits (189), Expect = 2e-12
Identities = 33/79 (41%), Positives = 57/79 (72%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQ-TKGYNPLMAIIMNRKGSLM 59
++I+YPPE++ S+ R + +RGTIWSMCF+S ++Q K +NP++AI++NRKG+ +
Sbjct: 192 ERIFYPPENEGSVSSTRSAQRTSIRGTIWSMCFVSKDSFQPNKEHNPVLAIVLNRKGNAL 251
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+L+L G + R + ++S
Sbjct: 252 NELVLLGWNIKERAVYVVS 270
>ref|XP_006481687.1| PREDICTED: uncharacterized protein LOC102624787 isoform X3 [Citrus
sinensis]
Length = 1182
Score = 73.9 bits (180), Expect = 2e-11
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQ-TKGYNPLMAIIMNRKGSLM 59
+KI YP ES++D S R + + GTIWSMCFIS Q +K +NP++AII+NR+G+L+
Sbjct: 192 KKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALL 251
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL G + I ++S
Sbjct: 252 NELLLVGWNIREHAISVLS 270
>ref|XP_006481686.1| PREDICTED: uncharacterized protein LOC102624787 isoform X2 [Citrus
sinensis]
Length = 1265
Score = 73.9 bits (180), Expect = 2e-11
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQ-TKGYNPLMAIIMNRKGSLM 59
+KI YP ES++D S R + + GTIWSMCFIS Q +K +NP++AII+NR+G+L+
Sbjct: 63 KKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALL 122
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL G + I ++S
Sbjct: 123 NELLLVGWNIREHAISVLS 141
>ref|XP_006481685.1| PREDICTED: uncharacterized protein LOC102624787 isoform X1 [Citrus
sinensis]
Length = 1394
Score = 73.9 bits (180), Expect = 2e-11
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQ-TKGYNPLMAIIMNRKGSLM 59
+KI YP ES++D S R + + GTIWSMCFIS Q +K +NP++AII+NR+G+L+
Sbjct: 192 KKICYPSESEVDTSASRIAQKNSISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALL 251
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL G + I ++S
Sbjct: 252 NELLLVGWNIREHAISVLS 270
>ref|XP_003638090.1| DNA damage-binding protein, partial [Medicago truncatula]
gi|355504025|gb|AES85228.1| DNA damage-binding protein,
partial [Medicago truncatula]
Length = 642
Score = 73.9 bits (180), Expect = 2e-11
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQT-KGYNPLMAIIMNRKGSLM 59
Q+I YP ES+ AS R + + GTIWSMCFIS + Q KG NP++AII+NR+G+L+
Sbjct: 7 QRIIYPSESEETASTSRTMQKTSISGTIWSMCFISVDSRQPIKGQNPVLAIILNRRGALL 66
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL + + I+ +IS
Sbjct: 67 NELLLLEWNVKAHIVSVIS 85
>ref|XP_006429954.1| hypothetical protein CICLE_v10011020mg [Citrus clementina]
gi|557532011|gb|ESR43194.1| hypothetical protein
CICLE_v10011020mg [Citrus clementina]
Length = 926
Score = 73.6 bits (179), Expect = 3e-11
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQ-TKGYNPLMAIIMNRKGSLM 59
+KI YP ES++D S R + + GTIWSMCFIS Q +K +NP++AII+NR+G+L+
Sbjct: 192 KKICYPSESEVDTSASRIAQKNRISGTIWSMCFISTDPRQPSKEHNPILAIILNRRGALL 251
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL G + I ++S
Sbjct: 252 NELLLVGWNIREHAISVLS 270
>ref|XP_003638105.1| Pre-mRNA-splicing factor rse1 [Medicago truncatula]
gi|355504040|gb|AES85243.1| Pre-mRNA-splicing factor
rse1 [Medicago truncatula]
Length = 1370
Score = 72.8 bits (177), Expect = 4e-11
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQT-KGYNPLMAIIMNRKGSLM 59
++I YP ES+ AS R + + GTIWSMCFIS + Q KG NP++AII+NR+G+L+
Sbjct: 187 ERIIYPSESEETASTSRTMQKTSISGTIWSMCFISVDSRQPIKGQNPVLAIILNRRGALL 246
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL + + I+ +IS
Sbjct: 247 NELLLLEWNVKAHIVSVIS 265
>ref|XP_003638096.1| DNA damage-binding protein, partial [Medicago truncatula]
gi|355504031|gb|AES85234.1| DNA damage-binding protein,
partial [Medicago truncatula]
Length = 822
Score = 72.8 bits (177), Expect = 4e-11
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQT-KGYNPLMAIIMNRKGSLM 59
++I YP ES+ AS R + + GTIWSMCFIS + Q KG NP++AII+NR+G+L+
Sbjct: 187 ERIIYPSESEETASTSRTMQKTSISGTIWSMCFISVDSRQPIKGQNPVLAIILNRRGALL 246
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL + + I+ +IS
Sbjct: 247 NELLLLEWNVKAHIVSVIS 265
>ref|XP_004494302.1| PREDICTED: uncharacterized protein LOC101490576 isoform X3 [Cicer
arietinum]
Length = 1365
Score = 72.0 bits (175), Expect = 8e-11
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQT-KGYNPLMAIIMNRKGSLM 59
++I YP ES+ AS R T + + GTIWSMCFIS + Q+ +NPL+AII+NR+G+L+
Sbjct: 184 ERIIYPSESEGTASTSRTTQKTSISGTIWSMCFISLDSRQSIVEHNPLLAIILNRRGALL 243
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL +R I +IS
Sbjct: 244 NELLLLEWSVKARTISVIS 262
>ref|XP_004494300.1| PREDICTED: uncharacterized protein LOC101490576 isoform X1 [Cicer
arietinum] gi|502112345|ref|XP_004494301.1| PREDICTED:
uncharacterized protein LOC101490576 isoform X2 [Cicer
arietinum]
Length = 1362
Score = 72.0 bits (175), Expect = 8e-11
Identities = 38/79 (48%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQT-KGYNPLMAIIMNRKGSLM 59
++I YP ES+ AS R T + + GTIWSMCFIS + Q+ +NPL+AII+NR+G+L+
Sbjct: 184 ERIIYPSESEGTASTSRTTQKTSISGTIWSMCFISLDSRQSIVEHNPLLAIILNRRGALL 243
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL +R I +IS
Sbjct: 244 NELLLLEWSVKARTISVIS 262
>ref|XP_004303372.1| PREDICTED: pre-mRNA-splicing factor rse-1-like [Fragaria vesca
subsp. vesca]
Length = 1396
Score = 72.0 bits (175), Expect = 8e-11
Identities = 36/78 (46%), Positives = 53/78 (67%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQTKGYNPLMAIIMNRKGSLMN 56
+KI YPPE+ D + R SI GTIWSM FIS Q+KG+NP++A+++NR G+++N
Sbjct: 188 KKIVYPPENDDDVNAARVQKNSI-SGTIWSMSFISQDPNQSKGHNPILAVVINRSGAVLN 246
Query: 55 DLLLFGCDPYSRIIQIIS 2
+LLL G + + I +IS
Sbjct: 247 ELLLLGWNIREQDIYVIS 264
>ref|XP_002308344.2| hypothetical protein POPTR_0006s21160g [Populus trichocarpa]
gi|550336774|gb|EEE91867.2| hypothetical protein
POPTR_0006s21160g [Populus trichocarpa]
Length = 1397
Score = 70.5 bits (171), Expect = 2e-10
Identities = 35/79 (44%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISH-GTYQTKGYNPLMAIIMNRKGSLM 59
++I YPPE++ +A+ R + GTIWSMCFIS ++ +K +NP++AII+NR+G+L+
Sbjct: 193 ERILYPPENEGNANVARSIQRPLTSGTIWSMCFISRDSSHPSKEHNPVLAIILNRRGALL 252
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL D I IS
Sbjct: 253 NELLLLRWDIRDHAISYIS 271
>ref|XP_006407388.1| hypothetical protein EUTSA_v10019900mg [Eutrema salsugineum]
gi|557108534|gb|ESQ48841.1| hypothetical protein
EUTSA_v10019900mg [Eutrema salsugineum]
Length = 1367
Score = 69.3 bits (168), Expect = 5e-10
Identities = 35/78 (44%), Positives = 53/78 (67%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQTKGYNPLMAIIMNRKGSLMN 56
++I YPPE +AS+ + + GTIWSMCFIS ++K Y+P++A+++NRKGSL+N
Sbjct: 192 ERICYPPEDGGNASSIQ-----AISGTIWSMCFISKDINESKEYDPVLAVVLNRKGSLLN 246
Query: 55 DLLLFGCDPYSRIIQIIS 2
+L+LF + I IIS
Sbjct: 247 ELILFRWNVKDEAICIIS 264
>ref|XP_004955777.1| PREDICTED: splicing factor 3B subunit 3-like isoform X4 [Setaria
italica]
Length = 1203
Score = 67.8 bits (164), Expect = 1e-09
Identities = 38/78 (48%), Positives = 51/78 (65%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQTKGYNPLMAIIMNRKGSLMN 56
+K +YPPE++ D + VRGTIW+M FIS T Q + Y P++A+I+NRKGS +N
Sbjct: 204 KKYFYPPENEEDERTVSGASRTSVRGTIWNMRFIS--TSQDEEYYPVLAMIINRKGSDVN 261
Query: 55 DLLLFGCDPYSRIIQIIS 2
DL LFG D S +I IS
Sbjct: 262 DLSLFGHDSSSGVINHIS 279
>ref|XP_004955775.1| PREDICTED: splicing factor 3B subunit 3-like isoform X2 [Setaria
italica]
Length = 1358
Score = 67.8 bits (164), Expect = 1e-09
Identities = 38/78 (48%), Positives = 51/78 (65%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQTKGYNPLMAIIMNRKGSLMN 56
+K +YPPE++ D + VRGTIW+M FIS T Q + Y P++A+I+NRKGS +N
Sbjct: 204 KKYFYPPENEEDERTVSGASRTSVRGTIWNMRFIS--TSQDEEYYPVLAMIINRKGSDVN 261
Query: 55 DLLLFGCDPYSRIIQIIS 2
DL LFG D S +I IS
Sbjct: 262 DLSLFGHDSSSGVINHIS 279
>ref|XP_004955774.1| PREDICTED: splicing factor 3B subunit 3-like isoform X1 [Setaria
italica]
Length = 1360
Score = 67.8 bits (164), Expect = 1e-09
Identities = 38/78 (48%), Positives = 51/78 (65%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQTKGYNPLMAIIMNRKGSLMN 56
+K +YPPE++ D + VRGTIW+M FIS T Q + Y P++A+I+NRKGS +N
Sbjct: 204 KKYFYPPENEEDERTVSGASRTSVRGTIWNMRFIS--TSQDEEYYPVLAMIINRKGSDVN 261
Query: 55 DLLLFGCDPYSRIIQIIS 2
DL LFG D S +I IS
Sbjct: 262 DLSLFGHDSSSGVINHIS 279
>gb|EMJ05498.1| hypothetical protein PRUPE_ppa000262mg [Prunus persica]
Length = 1378
Score = 67.0 bits (162), Expect = 2e-09
Identities = 37/79 (46%), Positives = 54/79 (68%), Gaps = 1/79 (1%)
Frame = -2
Query: 235 QKIYYPPESKIDASNGRDTLGSIVRGTIWSMCFISHGTYQT-KGYNPLMAIIMNRKGSLM 59
+KI +P E + DAS R SI GTIWSM FIS Q+ KG+NP++AI++NR+G+++
Sbjct: 186 KKIVFPQEKEADASAARVQKNSIC-GTIWSMSFISKDPSQSSKGHNPVLAILLNRRGAVL 244
Query: 58 NDLLLFGCDPYSRIIQIIS 2
N+LLL G + + I +IS
Sbjct: 245 NELLLLGWNISEQEIYVIS 263