BLASTX nr result
ID: Zingiber25_contig00040047
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00040047
(307 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [S... 65 1e-11
dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryz... 62 4e-11
gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indi... 62 4e-11
gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japo... 62 4e-11
ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I sub... 62 6e-11
gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza... 61 1e-10
tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family... 70 4e-10
ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I sub... 64 2e-08
gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza... 64 2e-08
ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I sub... 51 2e-08
gb|EMT12934.1| DNA-directed RNA polymerase I subunit RPA1 [Aegil... 48 3e-08
ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 53 4e-08
ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I sub... 53 4e-08
gb|ACN85238.1| putative RNA polymerase A(I) large subunit [Oryza... 63 5e-08
gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triti... 48 7e-08
ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arab... 45 1e-05
>ref|XP_002440173.1| hypothetical protein SORBIDRAFT_09g027223 [Sorghum bicolor]
gi|241945458|gb|EES18603.1| hypothetical protein
SORBIDRAFT_09g027223 [Sorghum bicolor]
Length = 799
Score = 65.1 bits (157), Expect(2) = 1e-11
Identities = 33/57 (57%), Positives = 41/57 (71%), Gaps = 2/57 (3%)
Frame = +3
Query: 78 VIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLLMLDLQCRSQSPME--RGYEIFF 242
V +++ SSG KHLLP+EVE ILKDLW NEA C+L+ D Q + S E RGYE+FF
Sbjct: 277 VKEMVASSGKKHLLPTEVESILKDLWNNEARFCMLLCDFQKNTLSEPEKRRGYEMFF 333
Score = 29.6 bits (65), Expect(2) = 1e-11
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 220 RGAMRFFFLKAILVPPNKFRPAAAST 297
R FFL ++LV PN+FRP+ S+
Sbjct: 326 RRGYEMFFLNSLLVAPNRFRPSTNSS 351
>dbj|BAD35511.1| putative RNA polymerase A(I) large subunit [Oryza sativa Japonica
Group]
Length = 1748
Score = 62.0 bits (149), Expect(2) = 4e-11
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = +3
Query: 33 QKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLLMLDLQCRSQS 212
+ T E ++ D + +++ SSG KHLL +EVE ILKDLWK EA C+L+ D Q + S
Sbjct: 270 RSTNETRRISD--DTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCMLLCDFQQNTLS 327
Query: 213 PME--RGYEIFF 242
E RGYE+FF
Sbjct: 328 VSEKRRGYEMFF 339
Score = 31.2 bits (69), Expect(2) = 4e-11
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 220 RGAMRFFFLKAILVPPNKFRPAAAST 297
R FFLK +LV PN+FRP+ +S+
Sbjct: 332 RRGYEMFFLKNLLVAPNRFRPSISSS 357
>gb|EEC80966.1| hypothetical protein OsI_23688 [Oryza sativa Indica Group]
Length = 1350
Score = 62.0 bits (149), Expect(2) = 4e-11
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = +3
Query: 33 QKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLLMLDLQCRSQS 212
+ T E ++ D + +++ SSG KHLL +EVE ILKDLWK EA C+L+ D Q + S
Sbjct: 356 RSTNETRRISD--DTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCMLLCDFQQNTLS 413
Query: 213 PME--RGYEIFF 242
E RGYE+FF
Sbjct: 414 VSEKRRGYEMFF 425
Score = 31.2 bits (69), Expect(2) = 4e-11
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 220 RGAMRFFFLKAILVPPNKFRPAAAST 297
R FFLK +LV PN+FRP+ +S+
Sbjct: 418 RRGYEMFFLKNLLVAPNRFRPSISSS 443
>gb|EEE66008.1| hypothetical protein OsJ_21959 [Oryza sativa Japonica Group]
Length = 994
Score = 62.0 bits (149), Expect(2) = 4e-11
Identities = 34/72 (47%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Frame = +3
Query: 33 QKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLLMLDLQCRSQS 212
+ T E ++ D + +++ SSG KHLL +EVE ILKDLWK EA C+L+ D Q + S
Sbjct: 52 RSTNETRRISD--DTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCMLLCDFQQNTLS 109
Query: 213 PME--RGYEIFF 242
E RGYE+FF
Sbjct: 110 VSEKRRGYEMFF 121
Score = 31.2 bits (69), Expect(2) = 4e-11
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = +1
Query: 220 RGAMRFFFLKAILVPPNKFRPAAAST 297
R FFLK +LV PN+FRP+ +S+
Sbjct: 114 RRGYEMFFLKNLLVAPNRFRPSISSS 139
>ref|XP_004967186.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Setaria
italica]
Length = 1682
Score = 61.6 bits (148), Expect(2) = 6e-11
Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Frame = +3
Query: 84 KLMQSSGPKHLLPSEVELILKDLWKNEADLCLLMLDLQ--CRSQSPMERGYEIFF 242
+ + SSG KHLLP+EVE ILK LWKNEA C+L+ D Q S S +GYE+FF
Sbjct: 295 EFVASSGKKHLLPTEVESILKGLWKNEARFCMLLCDFQQDTLSVSEKRKGYEMFF 349
Score = 30.8 bits (68), Expect(2) = 6e-11
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 220 RGAMRFFFLKAILVPPNKFRPAAAST 297
R FFL ++LV PN+FRP+ +S+
Sbjct: 342 RKGYEMFFLNSLLVAPNRFRPSTSSS 367
>gb|ACN85301.1| putative RNA polymerase A(I) large subunit [Oryza coarctata]
Length = 1830
Score = 60.8 bits (146), Expect(2) = 1e-10
Identities = 35/82 (42%), Positives = 49/82 (59%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 EMADELSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
E+ +S T E ++ D + +++ SSG KHLL +EVE ILK+LWKNEA C+L
Sbjct: 251 ELTSPGTSSRGSTNETRRISD--DTIKEMVASSGKKHLLTTEVESILKNLWKNEARFCML 308
Query: 183 MLDLQ--CRSQSPMERGYEIFF 242
+ D Q + S RGYE+FF
Sbjct: 309 LCDFQQNTLNVSDKGRGYEMFF 330
Score = 30.4 bits (67), Expect(2) = 1e-10
Identities = 12/20 (60%), Positives = 17/20 (85%)
Frame = +1
Query: 238 FFLKAILVPPNKFRPAAAST 297
FFLK +LV PN+FRP+ +S+
Sbjct: 329 FFLKNLLVAPNRFRPSISSS 348
>tpg|DAA45226.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
Length = 548
Score = 69.7 bits (169), Expect = 4e-10
Identities = 42/83 (50%), Positives = 54/83 (65%), Gaps = 4/83 (4%)
Frame = +3
Query: 6 MADELSSLEQKTKEKI-KLDDLPPEVIK-LMQSSGPKHLLPSEVELILKDLWKNEADLCL 179
+ +E SS +K+ I ++ L + IK L+ SSG KHLLP+EVE ILKDLWKNEA C+
Sbjct: 251 LEEESSSPGMVSKDSINEVRGLSDDTIKELVASSGKKHLLPTEVESILKDLWKNEARFCM 310
Query: 180 LMLDLQCRSQSPME--RGYEIFF 242
L+ D Q S E RGYE+FF
Sbjct: 311 LLCDFQKNMSSEPEKRRGYEMFF 333
>ref|XP_006656244.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like [Oryza
brachyantha]
Length = 1755
Score = 63.9 bits (154), Expect = 2e-08
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 EMADELSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
E+ +S T E ++ D + +++ SSG KHLL +EVE ILKDLWKNEA C+L
Sbjct: 252 ELTSPGTSSRGSTNETRRISD--DTIKEMVASSGKKHLLATEVESILKDLWKNEARFCML 309
Query: 183 MLDLQ--CRSQSPMERGYEIFF 242
+ D Q + S +RGYE+FF
Sbjct: 310 LCDFQQNTLNVSEKKRGYEMFF 331
>gb|ACN85329.1| putative RNA polymerase A(I) large subunit [Oryza brachyantha]
Length = 1138
Score = 63.9 bits (154), Expect = 2e-08
Identities = 36/82 (43%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 EMADELSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
E+ +S T E ++ D + +++ SSG KHLL +EVE ILKDLWKNEA C+L
Sbjct: 252 ELTSPGTSSRGSTNETRRISD--DTIKEMVASSGKKHLLATEVESILKDLWKNEARFCML 309
Query: 183 MLDLQ--CRSQSPMERGYEIFF 242
+ D Q + S +RGYE+FF
Sbjct: 310 LCDFQQNTLNVSEKKRGYEMFF 331
>ref|XP_003559192.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa1-like
[Brachypodium distachyon]
Length = 1868
Score = 50.8 bits (120), Expect(2) = 2e-08
Identities = 26/44 (59%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +3
Query: 114 LLPSEVELILKDLWKNEADLCLLMLDLQCR-SQSPMERGYEIFF 242
LL +EVE ILKDLW+NEA C+L+ D Q S S RGYE+FF
Sbjct: 503 LLATEVESILKDLWENEARFCMLLCDFQQNLSVSEKRRGYEMFF 546
Score = 32.7 bits (73), Expect(2) = 2e-08
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +1
Query: 220 RGAMRFFFLKAILVPPNKFRPAAAST 297
R FFLK++LV PN+FRP+ +S+
Sbjct: 539 RRGYEMFFLKSLLVTPNRFRPSTSSS 564
>gb|EMT12934.1| DNA-directed RNA polymerase I subunit RPA1 [Aegilops tauschii]
Length = 1717
Score = 47.8 bits (112), Expect(2) = 3e-08
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Frame = +3
Query: 99 SGPKHLLPSEVELILKDLWKNEADLCLLMLDLQ---CRSQSPMERGYEIFF 242
S + LL +EVE ILKDLW+ EA C+L+ D Q C S+ RGYE+FF
Sbjct: 210 SDDRPLLTTEVESILKDLWEKEARFCMLLCDFQQNLCVSEK--RRGYEMFF 258
Score = 35.4 bits (80), Expect(2) = 3e-08
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = +1
Query: 220 RGAMRFFFLKAILVPPNKFRPAAAST 297
R FFLK++LVPPN+FRP+ +S+
Sbjct: 251 RRGYEMFFLKSMLVPPNRFRPSTSSS 276
>ref|XP_004165748.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase I
subunit RPA1-like [Cucumis sativus]
Length = 1652
Score = 52.8 bits (125), Expect(2) = 4e-08
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +3
Query: 9 ADELSSLEQKTKEKIKLDD---LPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCL 179
A+ +SSLE++T + ++D + PEV + ++ HLLPSEV+ ILK LWKNEA LC
Sbjct: 242 AEGVSSLEEETTTEATVEDFEDVSPEVF-MQKNFSSGHLLPSEVKDILKRLWKNEALLCS 300
Query: 180 LMLDLQCRSQSPMERGYEIFFPE 248
+ D+ + + G+ +FF E
Sbjct: 301 FISDISQQGHG-NKAGHSMFFLE 322
Score = 30.0 bits (66), Expect(2) = 4e-08
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 238 FFLKAILVPPNKFRPAA 288
FFL+++LVPP KFRP A
Sbjct: 319 FFLESVLVPPIKFRPPA 335
>ref|XP_004136744.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA1-like [Cucumis
sativus]
Length = 1650
Score = 52.8 bits (125), Expect(2) = 4e-08
Identities = 33/83 (39%), Positives = 51/83 (61%), Gaps = 3/83 (3%)
Frame = +3
Query: 9 ADELSSLEQKTKEKIKLDD---LPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCL 179
A+ +SSLE++T + ++D + PEV + ++ HLLPSEV+ ILK LWKNEA LC
Sbjct: 236 AEGVSSLEEETTTEATVEDFEDVSPEVF-MQKNFSSGHLLPSEVKDILKRLWKNEALLCS 294
Query: 180 LMLDLQCRSQSPMERGYEIFFPE 248
+ D+ + + G+ +FF E
Sbjct: 295 FISDISQQGHG-NKAGHSMFFLE 316
Score = 30.0 bits (66), Expect(2) = 4e-08
Identities = 12/17 (70%), Positives = 15/17 (88%)
Frame = +1
Query: 238 FFLKAILVPPNKFRPAA 288
FFL+++LVPP KFRP A
Sbjct: 313 FFLESVLVPPIKFRPPA 329
>gb|ACN85238.1| putative RNA polymerase A(I) large subunit [Oryza minuta]
Length = 563
Score = 62.8 bits (151), Expect = 5e-08
Identities = 35/82 (42%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Frame = +3
Query: 3 EMADELSSLEQKTKEKIKLDDLPPEVIKLMQSSGPKHLLPSEVELILKDLWKNEADLCLL 182
E+ +S + T E ++ D + +++ SSG KHLL +EVE ILKDLWK EA C+L
Sbjct: 260 ELTSPGTSSRRSTNETRRISD--DTIKEMVASSGKKHLLTTEVESILKDLWKKEARFCML 317
Query: 183 MLDLQCRSQSPME--RGYEIFF 242
+ D Q + + E RGYE+FF
Sbjct: 318 LCDFQQNTLNVSEKRRGYEMFF 339
>gb|EMS52925.1| DNA-directed RNA polymerase I subunit rpa1 [Triticum urartu]
Length = 1915
Score = 47.8 bits (112), Expect(2) = 7e-08
Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 3/51 (5%)
Frame = +3
Query: 99 SGPKHLLPSEVELILKDLWKNEADLCLLMLDLQ---CRSQSPMERGYEIFF 242
S + LL +EVE ILKDLW+ EA C+L+ D Q C S+ RGYE+FF
Sbjct: 510 SDDRPLLATEVESILKDLWEKEARFCMLLCDFQKNLCVSEK--RRGYEMFF 558
Score = 34.3 bits (77), Expect(2) = 7e-08
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = +1
Query: 220 RGAMRFFFLKAILVPPNKFRPAAAST 297
R FFLK++LVPPN+FRP+ S+
Sbjct: 551 RRGYEMFFLKSMLVPPNRFRPSTNSS 576
>ref|XP_002876429.1| hypothetical protein ARALYDRAFT_486216 [Arabidopsis lyrata subsp.
lyrata] gi|297322267|gb|EFH52688.1| hypothetical protein
ARALYDRAFT_486216 [Arabidopsis lyrata subsp. lyrata]
Length = 1678
Score = 45.4 bits (106), Expect(2) = 1e-05
Identities = 34/83 (40%), Positives = 45/83 (54%), Gaps = 4/83 (4%)
Frame = +3
Query: 12 DELSSLEQKTKEKIKLDDLPPEVIKLMQ---SSGPKHLLPSEVELILKDLWKNEADLCLL 182
D LS +E KE + EV+K + +S + LLP+EV ILKDLW+NE D C
Sbjct: 270 DALSEVEDGDKET---REKSTEVVKEFEEHNNSSKRDLLPTEVREILKDLWENEHDFCSF 326
Query: 183 MLDLQCRSQSPMER-GYEIFFPE 248
+ DL QS E+ Y +FF E
Sbjct: 327 IGDLW---QSGSEKIDYSMFFLE 346
Score = 29.3 bits (64), Expect(2) = 1e-05
Identities = 11/16 (68%), Positives = 15/16 (93%)
Frame = +1
Query: 238 FFLKAILVPPNKFRPA 285
FFL+++LVPP KFRP+
Sbjct: 343 FFLESVLVPPIKFRPS 358