BLASTX nr result
ID: Zingiber25_contig00039835
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00039835
(385 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAD09699.1| hypothetical protein [Oryza sativa Japonica Grou... 120 1e-25
gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japo... 120 1e-25
ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group] g... 120 1e-25
gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays] 116 3e-24
ref|XP_004974856.1| PREDICTED: RNA pseudouridine synthase 3, mit... 114 2e-23
ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 113 2e-23
ref|XP_002444745.1| hypothetical protein SORBIDRAFT_07g027030 [S... 108 7e-22
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 108 7e-22
emb|CBI18448.3| unnamed protein product [Vitis vinifera] 108 7e-22
gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ... 105 6e-21
ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 105 8e-21
ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 105 8e-21
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [... 105 8e-21
gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis] 103 2e-20
gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis] 102 4e-20
ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 100 2e-19
ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitoc... 100 2e-19
gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus pe... 100 3e-19
gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus... 98 1e-18
ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mit... 94 2e-17
>dbj|BAD09699.1| hypothetical protein [Oryza sativa Japonica Group]
gi|42409168|dbj|BAD10434.1| hypothetical protein [Oryza
sativa Japonica Group]
Length = 192
Score = 120 bits (302), Expect = 1e-25
Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 3/97 (3%)
Frame = +3
Query: 102 AVRWLSRVAPPAPVKAEPII-RVS-NNIARLGEPKRAPKPRQLLSLPPFPNSGT-EPLPG 272
AVRWLSR+APPAP +A+P++ RV +N+ARLG+PK P+PRQLLSLPPFP G +PLPG
Sbjct: 72 AVRWLSRLAPPAPAEADPVVVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPG 131
Query: 273 RKKSAGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
RK +A RRVTA+SWVKHY AD+ +E ++ HFN
Sbjct: 132 RKAAA-----PRRVTAVSWVKHYLADVPQEVVQAHFN 163
>gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
Length = 509
Score = 120 bits (302), Expect = 1e-25
Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 3/97 (3%)
Frame = +3
Query: 102 AVRWLSRVAPPAPVKAEPII-RVS-NNIARLGEPKRAPKPRQLLSLPPFPNSGT-EPLPG 272
AVRWLSR+APPAP +A+P++ RV +N+ARLG+PK P+PRQLLSLPPFP G +PLPG
Sbjct: 45 AVRWLSRLAPPAPAEADPVVVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPG 104
Query: 273 RKKSAGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
RK +A RRVTA+SWVKHY AD+ +E ++ HFN
Sbjct: 105 RKAAA-----PRRVTAVSWVKHYLADVPQEVVQAHFN 136
>ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group]
gi|122234516|sp|Q0J4D4.1|PUS3_ORYSJ RecName: Full=RNA
pseudouridine synthase 3, mitochondrial; AltName:
Full=RNA pseudouridylate synthase 3; AltName:
Full=RNA-uridine isomerase 3; Flags: Precursor
gi|113624234|dbj|BAF24179.1| Os08g0520100 [Oryza sativa
Japonica Group] gi|125562210|gb|EAZ07658.1| hypothetical
protein OsI_29911 [Oryza sativa Indica Group]
Length = 475
Score = 120 bits (302), Expect = 1e-25
Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 3/97 (3%)
Frame = +3
Query: 102 AVRWLSRVAPPAPVKAEPII-RVS-NNIARLGEPKRAPKPRQLLSLPPFPNSGT-EPLPG 272
AVRWLSR+APPAP +A+P++ RV +N+ARLG+PK P+PRQLLSLPPFP G +PLPG
Sbjct: 11 AVRWLSRLAPPAPAEADPVVVRVDGSNVARLGKPKPGPRPRQLLSLPPFPGGGDGDPLPG 70
Query: 273 RKKSAGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
RK +A RRVTA+SWVKHY AD+ +E ++ HFN
Sbjct: 71 RKAAA-----PRRVTAVSWVKHYLADVPQEVVQAHFN 102
>gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
Length = 478
Score = 116 bits (291), Expect = 3e-24
Identities = 60/96 (62%), Positives = 76/96 (79%), Gaps = 2/96 (2%)
Frame = +3
Query: 102 AVRWLSRVAPPAPVKAEPII-RV-SNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGR 275
A+R LSR+APPAP A+P++ RV +NN+ARLG PK P+PRQLLSLPPFP +G +PLPGR
Sbjct: 17 ALRRLSRLAPPAPAPADPVVVRVDANNVARLGAPKPRPRPRQLLSLPPFP-AGQDPLPGR 75
Query: 276 KKSAGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
K + RRVTA+SWVKHYFAD+ +EA++ HFN
Sbjct: 76 KVA------PRRVTAVSWVKHYFADVPQEAVQAHFN 105
>ref|XP_004974856.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like,
partial [Setaria italica]
Length = 464
Score = 114 bits (284), Expect = 2e-23
Identities = 59/96 (61%), Positives = 74/96 (77%), Gaps = 2/96 (2%)
Frame = +3
Query: 102 AVRWLSRVAPPAPVKAEPII-RV-SNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGR 275
A+R LSR+APP P A+P++ RV S+N+ARLG PK P+PRQLLSLPPFP +G +PLPGR
Sbjct: 3 ALRRLSRLAPPTPAPADPVVVRVDSSNVARLGAPKPGPRPRQLLSLPPFP-AGADPLPGR 61
Query: 276 KKSAGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
K RRVTA+SWVKHYFAD+ +EA++ HFN
Sbjct: 62 KV------VPRRVTAVSWVKHYFADVPQEAVQAHFN 91
>ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like
[Brachypodium distachyon]
Length = 479
Score = 113 bits (283), Expect = 2e-23
Identities = 56/94 (59%), Positives = 71/94 (75%), Gaps = 2/94 (2%)
Frame = +3
Query: 108 RWLSRVAPPAPVKAEPIIRVSN--NIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKK 281
R LSR+APPAP A P++RV + N+ARLG PK P+PRQLLSLPPFP +G +PLPGRK
Sbjct: 16 RRLSRLAPPAPAAAAPVVRVESGSNVARLGAPKPGPRPRQLLSLPPFP-AGADPLPGRKT 74
Query: 282 SAGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
+A RRV+A+SWVKH FAD+ +E ++ HFN
Sbjct: 75 AAAEA--SRRVSAVSWVKHCFADVPQEVVQAHFN 106
>ref|XP_002444745.1| hypothetical protein SORBIDRAFT_07g027030 [Sorghum bicolor]
gi|241941095|gb|EES14240.1| hypothetical protein
SORBIDRAFT_07g027030 [Sorghum bicolor]
Length = 439
Score = 108 bits (270), Expect = 7e-22
Identities = 56/95 (58%), Positives = 72/95 (75%), Gaps = 2/95 (2%)
Frame = +3
Query: 105 VRWLSRVAPPAPVKAEPII-RV-SNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRK 278
+R LSR+APPAP A+P++ RV ++N+ARLG PK P+PRQLLSLP FP +G +PLPGRK
Sbjct: 18 LRRLSRLAPPAPAAADPVVVRVDASNVARLGPPKPGPRPRQLLSLPAFP-AGLDPLPGRK 76
Query: 279 KSAGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
+ RRVT +SWVKHYFAD+ EA++ HFN
Sbjct: 77 AAP------RRVTVVSWVKHYFADVPHEAVQAHFN 105
>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
vinifera]
Length = 479
Score = 108 bits (270), Expect = 7e-22
Identities = 54/97 (55%), Positives = 64/97 (65%)
Frame = +3
Query: 93 IFEAVRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPG 272
+F VR SR+APP P A P+IRVSNN+A+LG PK PKPRQLLSLPPFP PLPG
Sbjct: 12 LFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFP---AHPLPG 68
Query: 273 RKKSAGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
K G VTAISW+K+YF +I ++ HFN
Sbjct: 69 -KSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFN 104
>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
Length = 481
Score = 108 bits (270), Expect = 7e-22
Identities = 54/97 (55%), Positives = 64/97 (65%)
Frame = +3
Query: 93 IFEAVRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPG 272
+F VR SR+APP P A P+IRVSNN+A+LG PK PKPRQLLSLPPFP PLPG
Sbjct: 12 LFPVVRHYSRIAPPRPASAAPVIRVSNNVAQLGSPKEGPKPRQLLSLPPFP---AHPLPG 68
Query: 273 RKKSAGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
K G VTAISW+K+YF +I ++ HFN
Sbjct: 69 -KSLVNVSGLPTHVTAISWIKYYFDEIPGSVVQSHFN 104
>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
Length = 471
Score = 105 bits (262), Expect = 6e-21
Identities = 54/93 (58%), Positives = 66/93 (70%)
Frame = +3
Query: 105 VRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKKS 284
VR SRVAPP P A+P++RVSN++A LG PK+ PKPRQLLSLPPFP PLPG+
Sbjct: 14 VRHYSRVAPPPPAYADPVLRVSNSVAYLGAPKQGPKPRQLLSLPPFPG---YPLPGKNP- 69
Query: 285 AGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
G RVTAISW+K+YF +I + AI+ HFN
Sbjct: 70 ----GGTARVTAISWLKYYFDEIPDSAIQSHFN 98
>ref|XP_004158518.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 105 bits (261), Expect = 8e-21
Identities = 54/93 (58%), Positives = 64/93 (68%)
Frame = +3
Query: 102 AVRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKK 281
A R SR++PP P A+PIIRVSNNIA+LG PK PK RQLLSLPPFP PLPG K
Sbjct: 12 ATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPG---YPLPG-KN 67
Query: 282 SAGSCGKQRRVTAISWVKHYFADIEEEAIRWHF 380
G G+ VTAI WVK+YF +I++ I+ HF
Sbjct: 68 QVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHF 100
>ref|XP_004138653.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Cucumis
sativus]
Length = 471
Score = 105 bits (261), Expect = 8e-21
Identities = 54/93 (58%), Positives = 64/93 (68%)
Frame = +3
Query: 102 AVRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKK 281
A R SR++PP P A+PIIRVSNNIA+LG PK PK RQLLSLPPFP PLPG K
Sbjct: 12 ATRCYSRISPPPPAYAKPIIRVSNNIAQLGSPKEGPKARQLLSLPPFPG---YPLPG-KN 67
Query: 282 SAGSCGKQRRVTAISWVKHYFADIEEEAIRWHF 380
G G+ VTAI WVK+YF +I++ I+ HF
Sbjct: 68 QVGVSGESTHVTAIRWVKYYFDEIQDSQIQSHF 100
>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
synthase, putative [Ricinus communis]
Length = 468
Score = 105 bits (261), Expect = 8e-21
Identities = 55/92 (59%), Positives = 62/92 (67%)
Frame = +3
Query: 108 RWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKKSA 287
R SR+APP P A P+IRVSNN+A LG PK PKPRQLLSLPPFP PLPGR A
Sbjct: 15 RSYSRIAPPPPAYANPVIRVSNNVAHLGSPKDGPKPRQLLSLPPFPGL---PLPGRNSMA 71
Query: 288 GSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
VTAISWVK+YF +I + AI+ HFN
Sbjct: 72 S------HVTAISWVKYYFDEILDSAIQSHFN 97
>gb|EXC58952.1| RNA pseudourine synthase 3 [Morus notabilis]
Length = 449
Score = 103 bits (257), Expect = 2e-20
Identities = 51/93 (54%), Positives = 64/93 (68%)
Frame = +3
Query: 105 VRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKKS 284
+R SR+ PPA +A P+IRVSNN+A+LG PK PKPRQLLSLPPFP PLPG+
Sbjct: 6 IRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGL---PLPGK--- 59
Query: 285 AGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
K RVTAI+WVK+YF ++ + I+ HFN
Sbjct: 60 -----KSERVTAITWVKYYFEEVHDNVIQSHFN 87
>gb|EXC41018.1| RNA pseudourine synthase 3 [Morus notabilis]
Length = 449
Score = 102 bits (255), Expect = 4e-20
Identities = 51/93 (54%), Positives = 63/93 (67%)
Frame = +3
Query: 105 VRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKKS 284
+R SR+ PPA +A P+IRVSNN+A+LG PK PKPRQLLSLPPFP PLPG+
Sbjct: 6 IRQYSRIRPPAAAEAGPVIRVSNNVAQLGGPKEGPKPRQLLSLPPFPGL---PLPGK--- 59
Query: 285 AGSCGKQRRVTAISWVKHYFADIEEEAIRWHFN 383
RVTAISWVK+YF ++ + I+ HFN
Sbjct: 60 -----NSERVTAISWVKYYFEEVHDNVIQSHFN 87
>ref|XP_004515177.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
X2 [Cicer arietinum]
Length = 360
Score = 100 bits (250), Expect = 2e-19
Identities = 52/92 (56%), Positives = 60/92 (65%)
Frame = +3
Query: 105 VRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKKS 284
VR SR+ PP PV E +IRVSNNIARL PK PKPRQLLSLPPFP PLPG K S
Sbjct: 18 VRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFP---CHPLPG-KNS 73
Query: 285 AGSCGKQRRVTAISWVKHYFADIEEEAIRWHF 380
+ GK+ VTA++W+K+YF I HF
Sbjct: 74 TSAPGKRDHVTAVNWIKYYFKGTSGSVIESHF 105
>ref|XP_004515176.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like isoform
X1 [Cicer arietinum]
Length = 479
Score = 100 bits (250), Expect = 2e-19
Identities = 52/92 (56%), Positives = 60/92 (65%)
Frame = +3
Query: 105 VRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKKS 284
VR SR+ PP PV E +IRVSNNIARL PK PKPRQLLSLPPFP PLPG K S
Sbjct: 18 VRHYSRIRPPKPVSVEKVIRVSNNIARLDVPKEGPKPRQLLSLPPFP---CHPLPG-KNS 73
Query: 285 AGSCGKQRRVTAISWVKHYFADIEEEAIRWHF 380
+ GK+ VTA++W+K+YF I HF
Sbjct: 74 TSAPGKRDHVTAVNWIKYYFKGTSGSVIESHF 105
>gb|EMJ11188.1| hypothetical protein PRUPE_ppa005240mg [Prunus persica]
Length = 471
Score = 100 bits (248), Expect = 3e-19
Identities = 53/93 (56%), Positives = 62/93 (66%)
Frame = +3
Query: 102 AVRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKK 281
A R SRV PP A P+IRVSN++ARLG PK PKPRQLLSLPPFP PLPG++
Sbjct: 14 ARREYSRVCPPPAKSAGPLIRVSNHVARLGPPKEGPKPRQLLSLPPFPG---HPLPGKRS 70
Query: 282 SAGSCGKQRRVTAISWVKHYFADIEEEAIRWHF 380
G G RVTA+SWVK+YF I + I+ HF
Sbjct: 71 HEG--GVVSRVTAVSWVKYYFDGIYDSTIQSHF 101
>gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
Length = 480
Score = 98.2 bits (243), Expect = 1e-18
Identities = 50/92 (54%), Positives = 59/92 (64%)
Frame = +3
Query: 105 VRWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKKS 284
VR SR+ PP PV EP+IRVSNN+ARL PK PKPRQLLSLPPFP PLP K S
Sbjct: 19 VRHYSRIQPPRPVSVEPVIRVSNNVARLDAPKEGPKPRQLLSLPPFPG---HPLPA-KSS 74
Query: 285 AGSCGKQRRVTAISWVKHYFADIEEEAIRWHF 380
G++ VTA++W+K+YF I HF
Sbjct: 75 TSDPGQRDYVTAVNWIKYYFKGAWGSVIESHF 106
>ref|XP_006601251.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
X2 [Glycine max]
Length = 449
Score = 93.6 bits (231), Expect = 2e-17
Identities = 50/92 (54%), Positives = 59/92 (64%), Gaps = 1/92 (1%)
Frame = +3
Query: 108 RWLSRVAPPAPVKAEPIIRVSNNIARLGEPKRAPKPRQLLSLPPFPNSGTEPLPGRKKSA 287
R SR+ PP PV EP+I VSNNIARL PK PKPRQLLSLPPFP PLP + +
Sbjct: 19 RHYSRIQPPRPVSVEPVISVSNNIARLDAPKEGPKPRQLLSLPPFPG---HPLPDKSSIS 75
Query: 288 GSCGKQR-RVTAISWVKHYFADIEEEAIRWHF 380
GS +QR VTA++W+K+YF I HF
Sbjct: 76 GS--RQRDYVTAVNWIKYYFKGTWGSVIESHF 105