BLASTX nr result
ID: Zingiber25_contig00039780
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00039780
(479 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera] 139 4e-39
emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera] 139 2e-38
gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subc... 140 6e-38
gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subc... 141 1e-37
emb|CAN71138.1| hypothetical protein VITISV_008660 [Vitis vinifera] 129 4e-37
dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol p... 135 9e-37
gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group] 135 9e-37
gb|ACY72569.1| unknown [Oryza sativa Japonica Group] 133 4e-36
gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group] gi|... 138 2e-35
gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group... 133 4e-35
gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group... 134 5e-35
emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera] 127 3e-34
gb|AAR88589.1| putative copia-like retrotransposon protein [Oryz... 125 3e-33
emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera] 106 4e-33
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc... 123 3e-32
gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Ho... 126 3e-32
gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subc... 126 3e-32
ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762... 117 6e-32
emb|CAN68578.1| hypothetical protein VITISV_019283 [Vitis vinifera] 112 6e-32
emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera] 103 1e-31
>emb|CAN81099.1| hypothetical protein VITISV_017741 [Vitis vinifera]
Length = 1455
Score = 139 bits (349), Expect(2) = 4e-39
Identities = 66/119 (55%), Positives = 84/119 (70%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F+ F QVE FD KI SL DWGGE++A +L +GI+HRVSCPHT +QNG AERKH
Sbjct: 628 FVNFKTQVELQFDLKIKSLQTDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAERKHR 687
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
+VE L LL+ A +PLKF D+ +T VYL NRLPT +L +KCP+E L+ +PDYS +
Sbjct: 688 TIVEHGLTLLHTASLPLKFWDESFRTVVYLSNRLPTAILHHKCPIEVLFKSIPDYSFLK 746
Score = 48.5 bits (114), Expect(2) = 4e-39
Identities = 20/49 (40%), Positives = 32/49 (65%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFKNKL 333
+WG +LSN + YY+ F+D FS+F+ IFL++ KS+ F FK ++
Sbjct: 587 LWGPTLVLSNSGYRYYIHFVDAFSRFSWIFLLRNKSEAIKTFVNFKTQV 635
>emb|CAN74695.1| hypothetical protein VITISV_024648 [Vitis vinifera]
Length = 1424
Score = 139 bits (349), Expect(2) = 2e-38
Identities = 66/119 (55%), Positives = 87/119 (73%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
FL F QVE KI ++ DWGGEY++ ++LTS+GIIHR+SCP+T EQNG AERKH
Sbjct: 611 FLHFKSQVELQLGHKIKAVQSDWGGEYRSFTQYLTSNGIIHRISCPYTHEQNGLAERKHR 670
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H+VE +ALL A +P K+ D+ +T+VYLINRLPTP+L+NK PLE L++ P YS +
Sbjct: 671 HIVEHGIALLAQASLPFKYWDEAFRTSVYLINRLPTPVLKNKSPLEVLFHQKPSYSXLK 729
Score = 46.2 bits (108), Expect(2) = 2e-38
Identities = 19/49 (38%), Positives = 32/49 (65%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFKNKL 333
+WG S+ YY+ FID +S+FT I+++K KS+ F +F FK+++
Sbjct: 570 LWGPASTPSSHGHQYYIHFIDAYSRFTWIYMLKHKSEAFQVFLHFKSQV 618
>gb|ABA98049.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1460
Score = 140 bits (353), Expect(2) = 6e-38
Identities = 66/119 (55%), Positives = 84/119 (70%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F VER FDRKIL++ DWGGEYQ+L+ + GI+H VSCPHT +QNG AERKH
Sbjct: 556 FQEFQVMVERQFDRKILAMQTDWGGEYQSLNSFFSKIGIVHHVSCPHTHQQNGSAERKHR 615
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H+VE L+LL+HA +PLKF D+ Q YLINR+P+ ++ N PLE+L+ PDYS R
Sbjct: 616 HIVEIGLSLLSHASMPLKFWDEAFQVATYLINRVPSRVIHNISPLEKLFKQKPDYSSLR 674
Score = 42.7 bits (99), Expect(2) = 6e-38
Identities = 22/46 (47%), Positives = 30/46 (65%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG P + YYV FID+FSKFT I+L++ KS +FD F F+
Sbjct: 516 VWGPAPESVGRK-KYYVSFIDDFSKFTWIYLIQHKSQVFDKFQEFQ 560
>gb|ABA97652.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1145
Score = 141 bits (355), Expect(2) = 1e-37
Identities = 65/119 (54%), Positives = 85/119 (71%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F +ER FDRKIL++ DWGGEY+AL+ + GI+H VSCPHT +QNG AERKH
Sbjct: 432 FQEFQVMIERLFDRKILAMQTDWGGEYRALNSFFSKIGIVHHVSCPHTHQQNGSAERKHR 491
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H+VE L+LL+HA +PLKF D+ Q YLINR+P+ ++QN PLE+ ++ PDYS R
Sbjct: 492 HIVEVGLSLLSHAHMPLKFWDEAFQAATYLINRVPSRVIQNTTPLEKFFHQKPDYSSLR 550
Score = 41.2 bits (95), Expect(2) = 1e-37
Identities = 18/32 (56%), Positives = 25/32 (78%)
Frame = -1
Query: 437 YYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
YYV FID+FSKFT I+L++ KS +F+ F F+
Sbjct: 405 YYVSFIDDFSKFTWIYLLQHKSQVFEKFQEFQ 436
>emb|CAN71138.1| hypothetical protein VITISV_008660 [Vitis vinifera]
Length = 1138
Score = 129 bits (325), Expect(2) = 4e-37
Identities = 63/119 (52%), Positives = 81/119 (68%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F+ F QVE FD KI SL DWGGE++A +L +GI+HRVSCPHT +QNG AE KH
Sbjct: 536 FVNFKTQVELQFDSKIKSLQTDWGGEFRAFQSYLAENGIVHRVSCPHTQQQNGVAEWKHR 595
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
+V L LL+ A +PLKF D+ +T VYL NRLPT +L +KC +E L+ +PDYS +
Sbjct: 596 TIVXHGLTLLHIAYLPLKFWDESFRTVVYLSNRLPTAVLHHKCLIEVLFKSIPDYSFLK 654
Score = 50.8 bits (120), Expect(2) = 4e-37
Identities = 20/49 (40%), Positives = 33/49 (67%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFKNKL 333
+WG P+LSN + YY+ F+D FS+F+ IFL++ +S+ F FK ++
Sbjct: 495 LWGPAPVLSNSGYRYYIHFVDAFSRFSWIFLLRNESEAIKTFVNFKTQV 543
>dbj|BAB90546.1| putative rice retrotransposon retrofit gag/pol polyprotein [Oryza
sativa Japonica Group]
Length = 1448
Score = 135 bits (341), Expect(2) = 9e-37
Identities = 64/119 (53%), Positives = 81/119 (68%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F VER FDRKI+++ DWGGEYQ L+ GI H VSCPHT +QNG AERKH
Sbjct: 565 FKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHK 624
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H++E L+LL++A +PLKF D+ YLINR+P+ +QN PLE+L+N PDYS R
Sbjct: 625 HIIEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLR 683
Score = 43.5 bits (101), Expect(2) = 9e-37
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG P ++ YYV FID+FSKFT I+L+K KS++F+ F F+
Sbjct: 525 VWGPAPESVGRN-KYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQ 569
>gb|ACV42639.1| gag/pol [Oryza sativa Japonica Group]
Length = 1448
Score = 135 bits (341), Expect(2) = 9e-37
Identities = 64/119 (53%), Positives = 81/119 (68%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F VER FDRKI+++ DWGGEYQ L+ GI H VSCPHT +QNG AERKH
Sbjct: 565 FKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFFAQIGIDHHVSCPHTHQQNGSAERKHK 624
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H++E L+LL++A +PLKF D+ YLINR+P+ +QN PLE+L+N PDYS R
Sbjct: 625 HIIEVGLSLLSYASMPLKFWDEAFVAATYLINRIPSKTIQNSTPLEKLFNQKPDYSSLR 683
Score = 43.5 bits (101), Expect(2) = 9e-37
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG P ++ YYV FID+FSKFT I+L+K KS++F+ F F+
Sbjct: 525 VWGPAPESVGRN-KYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQ 569
>gb|ACY72569.1| unknown [Oryza sativa Japonica Group]
Length = 1436
Score = 133 bits (335), Expect(2) = 4e-36
Identities = 63/119 (52%), Positives = 80/119 (67%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F VER FDRKI+++ DWGGEYQ L+ GI H VSCPHT +QNG AERKH
Sbjct: 562 FKEFQALVERMFDRKIIAMQTDWGGEYQKLNSFFAKIGIDHHVSCPHTHQQNGSAERKHR 621
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H++E L+LL++A +PLKF D+ YLINR+P+ +QN PLE+L+N PDY R
Sbjct: 622 HIIEVGLSLLSYASMPLKFWDEAFVAATYLINRVPSKTIQNSTPLEKLFNQKPDYLSLR 680
Score = 43.5 bits (101), Expect(2) = 4e-36
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG P ++ YYV FID+FSKFT I+L+K KS++F+ F F+
Sbjct: 522 VWGPAPESVGRN-KYYVSFIDDFSKFTWIYLLKYKSEVFEKFKEFQ 566
>gb|AAU43956.1| unknown protein [Oryza sativa Japonica Group]
gi|52353503|gb|AAU44069.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1447
Score = 138 bits (348), Expect(2) = 2e-35
Identities = 68/119 (57%), Positives = 80/119 (67%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F VER F+RKI+++ DWGGEY+ LH T GI H VSCPHT +QNG AERKH
Sbjct: 562 FHEFQALVERLFNRKIIAMQSDWGGEYEKLHSFFTKIGITHHVSCPHTHQQNGSAERKHR 621
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H+VE L LL ++ +PLKF D+ Q VYLINR PT LLQ PLE L+N PDYS R
Sbjct: 622 HIVEVGLTLLAYSSMPLKFWDEAFQAAVYLINRTPTKLLQFLTPLEHLFNQTPDYSSLR 680
Score = 36.6 bits (83), Expect(2) = 2e-35
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = -1
Query: 437 YYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
YYV FI ++SKFT ++L+K KS++ F+ F+
Sbjct: 535 YYVSFIGDYSKFTWLYLIKHKSEVIQKFHEFQ 566
>gb|AAT69582.1| putative polyprotein [Oryza sativa Japonica Group]
gi|52353546|gb|AAU44112.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1256
Score = 133 bits (334), Expect(2) = 4e-35
Identities = 64/112 (57%), Positives = 77/112 (68%)
Frame = -3
Query: 336 VERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHHHMVETAL 157
VER F+RKI+S+ DWGGEYQ L+ GI H VSCPHT +QNG AERKH H+VE L
Sbjct: 398 VERMFNRKIISMQTDWGGEYQKLNTFFNKIGITHHVSCPHTHQQNGSAERKHRHIVEVGL 457
Query: 156 ALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
+LL HA +PLKF D+ Q+ VYLINR+PT +L PLE L+ PDY R
Sbjct: 458 SLLAHASLPLKFWDEAYQSGVYLINRMPTKVLGYSSPLECLFKQTPDYQALR 509
Score = 40.8 bits (94), Expect(2) = 4e-35
Identities = 20/46 (43%), Positives = 28/46 (60%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG P+ YYV FID FS+FT I+ +K KS++F F F+
Sbjct: 351 VWGPAPVAGGGK-KYYVSFIDAFSRFTWIYFLKYKSEVFQKFQEFQ 395
>gb|AAT07563.1| putative polyprotein [Oryza sativa Japonica Group]
gi|46981313|gb|AAT07631.1| putative polyprotein [Oryza
sativa Japonica Group]
Length = 1431
Score = 134 bits (337), Expect(2) = 5e-35
Identities = 66/119 (55%), Positives = 77/119 (64%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F K VER FDRKILS+ DWGGEY LH GI H VSCPHT +QNG ERKH
Sbjct: 549 FHEFQKLVERQFDRKILSMQTDWGGEYLKLHTFFNEIGISHHVSCPHTHQQNGAVERKHR 608
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H+VE L+LL HA +PLKF D+ YLINRLP+ +++ PLERL+ PDY R
Sbjct: 609 HIVEVGLSLLAHASMPLKFWDEAFLAATYLINRLPSKVIKFDTPLERLFKQTPDYKSLR 667
Score = 39.3 bits (90), Expect(2) = 5e-35
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = -1
Query: 437 YYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
YYV FID++SKF I+ +K KS++F F+ F+
Sbjct: 522 YYVSFIDDYSKFVWIYFLKHKSEVFQKFHEFQ 553
>emb|CAN67819.1| hypothetical protein VITISV_041315 [Vitis vinifera]
Length = 1242
Score = 127 bits (318), Expect(2) = 3e-34
Identities = 60/116 (51%), Positives = 77/116 (66%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
FL F Q E F K+ + DWGGE+++L + +GIIHR+SCPHT +QNG ERKH
Sbjct: 669 FLMFKAQAELQFGCKLXTFQXDWGGEFRSLKTYFEQNGIIHRLSCPHTSKQNGIIERKHR 728
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYS 10
H+VE L LL A +PLK+ D T V+LINRLPT +L+ KCP E L+N P+YS
Sbjct: 729 HIVELGLTLLAQASLPLKYWPDAFSTXVFLINRLPTEVLKQKCPYEFLFNSKPNYS 784
Score = 43.9 bits (102), Expect(2) = 3e-34
Identities = 19/46 (41%), Positives = 28/46 (60%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG PI S+ F YYV F D +S++T ++ +K KS + F FK
Sbjct: 628 LWGPAPINSSYGFTYYVSFXDAYSRYTXVYFLKTKSQTREAFLMFK 673
>gb|AAR88589.1| putative copia-like retrotransposon protein [Oryza sativa Japonica
Group]
Length = 1399
Score = 125 bits (314), Expect(2) = 3e-33
Identities = 59/119 (49%), Positives = 77/119 (64%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F VER+F KIL++ DWGGEYQ L+ GI H VSCP+ +QNG AERKH
Sbjct: 524 FQEFQTLVERFFGHKILAVQTDWGGEYQKLNTFFAKIGISHHVSCPYAHQQNGSAERKHR 583
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H++E AL LL HA +P+KF D+ V YLINR P+ ++ CPLE+L+ P+Y+ R
Sbjct: 584 HLIEVALTLLAHASMPIKFWDEAVLAAAYLINRTPSKVINFACPLEQLFKEKPNYTALR 642
Score = 42.4 bits (98), Expect(2) = 3e-33
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG PI S +YV FID++SKFT ++L+K KS++F F F+
Sbjct: 484 VWGPAPI-SVGGKKFYVSFIDDYSKFTWVYLLKHKSEVFQKFQEFQ 528
>emb|CAN78022.1| hypothetical protein VITISV_015518 [Vitis vinifera]
Length = 1501
Score = 106 bits (265), Expect(2) = 4e-33
Identities = 58/120 (48%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQ--ALHRHLTSSGIIHRVSCPHTPEQNGFAERK 184
FL F K VE +I D G E+ HL +SGI H++SCP+TP QNG AERK
Sbjct: 513 FLQFQKFVENQHSARIKVFQSDGGAEFTNTCFKAHLRTSGIHHQLSCPYTPAQNGRAERK 572
Query: 183 HHHMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLF 4
H H+ ET LALL H+ + +F D T Y+INRLPTPLL K P E LY P Y F
Sbjct: 573 HRHVTETGLALLFHSHLSPRFWVDAFSTATYIINRLPTPLLGGKSPFELLYGXSPHYENF 632
Score = 60.5 bits (145), Expect(2) = 4e-33
Identities = 27/46 (58%), Positives = 35/46 (76%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG PI SN FLYYVIFID++S+FT ++ +K KSD FDIF F+
Sbjct: 472 LWGPSPIKSNSGFLYYVIFIDDYSRFTWLYPLKFKSDFFDIFLQFQ 517
>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
gi|531389|gb|AAA57005.1| copia-like retrotransposon
Hopscotch polyprotein [Zea mays]
Length = 1439
Score = 123 bits (308), Expect(2) = 3e-32
Identities = 60/119 (50%), Positives = 75/119 (63%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F VER F RKI++ DWGGEY+ L+ H + GI H+VSCPHT +QNG AERKH
Sbjct: 562 FCEFQHLVERMFGRKIIAFQSDWGGEYEKLNAHFKTIGIHHQVSCPHTHQQNGAAERKHR 621
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H+VE LALL + +PLK+ D VYLINR P+ + + PL +L PDYS R
Sbjct: 622 HIVEVGLALLAQSSMPLKYWDHAFLAAVYLINRTPSKTIAHDTPLHKLTGATPDYSSLR 680
Score = 41.2 bits (95), Expect(2) = 3e-32
Identities = 17/35 (48%), Positives = 27/35 (77%)
Frame = -1
Query: 443 FLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFKN 339
+ YYV FID++SKFT I+L++ KSD++ F F++
Sbjct: 533 YKYYVSFIDDYSKFTWIYLLRHKSDVYKSFCEFQH 567
>gb|AAK09230.1|AC084320_17 putative copia-like retrotransposon Hopscotch polyprotein [Oryza
sativa Japonica Group]
gi|14718304|gb|AAK72882.1|AC091123_1 putative gag-pol
protein [Oryza sativa Japonica Group]
Length = 1219
Score = 126 bits (317), Expect(2) = 3e-32
Identities = 62/119 (52%), Positives = 75/119 (63%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F VER F+RKIL + DWGGEYQ L+ GI H+VSCPHT +QNG ERKH
Sbjct: 550 FKEFQSMVERQFNRKILGMQTDWGGEYQKLNSFFKQIGIAHQVSCPHTHQQNGAVERKHR 609
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H+VE L+LL HA +PLKF D+ YLINRLP ++ PL RL++ PDY R
Sbjct: 610 HIVEIGLSLLAHASMPLKFWDEAFLAATYLINRLPRKVIDFDTPLARLFHQQPDYKSLR 668
Score = 37.7 bits (86), Expect(2) = 3e-32
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -1
Query: 437 YYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFKN 339
YYV FID++SKF I+ +K KS++F+ F F++
Sbjct: 523 YYVSFIDDYSKFVWIYFLKFKSEVFEKFKEFQS 555
>gb|ABF99203.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1177
Score = 126 bits (317), Expect(2) = 3e-32
Identities = 62/119 (52%), Positives = 75/119 (63%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F VER F+RKIL + DWGGEYQ L+ GI H+VSCPHT +QNG ERKH
Sbjct: 439 FKEFQSMVERQFNRKILGMQTDWGGEYQKLNSFFKQIGIAHQVSCPHTHQQNGAVERKHR 498
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H+VE L+LL HA +PLKF D+ YLINRLP ++ PL RL++ PDY R
Sbjct: 499 HIVEIGLSLLAHASMPLKFWDEAFLAATYLINRLPRKVIDFDTPLARLFHQQPDYKSLR 557
Score = 37.7 bits (86), Expect(2) = 3e-32
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = -1
Query: 437 YYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFKN 339
YYV FID++SKF I+ +K KS++F+ F F++
Sbjct: 412 YYVSFIDDYSKFVWIYFLKFKSEVFEKFKEFQS 444
>ref|XP_004967136.1| PREDICTED: uncharacterized protein LOC101762311 [Setaria italica]
Length = 866
Score = 117 bits (294), Expect(2) = 6e-32
Identities = 59/119 (49%), Positives = 74/119 (62%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHH 178
F F + VER +KIL + DWGGEY+ L+ GI HRVSCPHT +QNG AERKH
Sbjct: 474 FQEFQQLVERKLSKKILCIQSDWGGEYEKLNSFFKKIGISHRVSCPHTHQQNGAAERKHR 533
Query: 177 HMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLFR 1
H++E LALL +A +PLKF D T YLIN LP+ ++ + P RL+ DYS R
Sbjct: 534 HIIEVGLALLANASMPLKFWDQAFLTATYLINLLPSKVINFEIPATRLFGDTSDYSNLR 592
Score = 45.4 bits (106), Expect(2) = 6e-32
Identities = 21/46 (45%), Positives = 31/46 (67%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG P + YYV FID++SK+T I+L+K KSD+F +F F+
Sbjct: 434 VWGPAPTSIGRS-TYYVSFIDDYSKYTWIYLLKHKSDVFRVFQEFQ 478
>emb|CAN68578.1| hypothetical protein VITISV_019283 [Vitis vinifera]
Length = 472
Score = 112 bits (279), Expect(2) = 6e-32
Identities = 56/109 (51%), Positives = 74/109 (67%)
Frame = -3
Query: 336 VERYFDRKILSLHFDWGGEYQALHRHLTSSGIIHRVSCPHTPEQNGFAERKHHHMVETAL 157
VE YF I +++ + GGEYQ+L L+ GI + S PHTP+ G AERKH H+VET L
Sbjct: 154 VENYFATTIQTVYSBGGGEYQSLSHVLSHFGIQYLKSPPHTPQVVGIAERKHRHVVETGL 213
Query: 156 ALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYS 10
ALL+H L+PL F QTT YLINRLPTP+L ++ P E+L+ P+Y+
Sbjct: 214 ALLHHVLMPLYFWTFAFQTTTYLINRLPTPILGHQSPFEKLFKKRPNYT 262
Score = 51.2 bits (121), Expect(2) = 6e-32
Identities = 22/46 (47%), Positives = 32/46 (69%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WG PI+S + YYVIF+D F+K+T ++ +K KSD+ IF FK
Sbjct: 106 VWGPAPIISYDHYRYYVIFVDYFTKYTWLYPLKHKSDVTSIFERFK 151
>emb|CAN79884.1| hypothetical protein VITISV_002539 [Vitis vinifera]
Length = 1453
Score = 103 bits (256), Expect(2) = 1e-31
Identities = 55/120 (45%), Positives = 69/120 (57%), Gaps = 2/120 (1%)
Frame = -3
Query: 357 FLPF*KQVERYFDRKILSLHFDWGGEYQA--LHRHLTSSGIIHRVSCPHTPEQNGFAERK 184
FL F K VE + KI D G E+ + HL GI H++SCP+TP QNG AERK
Sbjct: 517 FLQFQKLVENQYSTKIKIFQSDGGAEFTSNRFQSHLQQFGIHHQMSCPYTPSQNGRAERK 576
Query: 183 HHHMVETALALLNHALVPLKF*DDVVQTTVYLINRLPTPLLQNKCPLERLYNCLPDYSLF 4
H H+ ET LALL H+ VP ++ D T Y+INRLP P+L P E L+ P+Y F
Sbjct: 577 HRHVTETGLALLFHSHVPPRYWVDAFSTATYIINRLPLPVLGGLSPFEVLFGKSPNYENF 636
Score = 59.3 bits (142), Expect(2) = 1e-31
Identities = 25/46 (54%), Positives = 35/46 (76%)
Frame = -1
Query: 479 MWGLVPILSNQDFLYYVIFIDNFSKFT*IFLMKRKSDLFDIFYPFK 342
+WGL P+ SN F YYV+FID++S+FT ++ +K KSD FDIF F+
Sbjct: 476 IWGLAPVKSNLGFNYYVLFIDDYSRFTWLYPLKLKSDFFDIFLQFQ 521