BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00039546
         (688 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III s...   325   8e-87
ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group] g...   319   6e-85
gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japo...   314   1e-83
ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III s...   304   2e-80
ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [S...   295   9e-78
tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family...   293   3e-77
ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III s...   286   4e-75
ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III s...   280   4e-73
emb|CBI16226.3| unnamed protein product [Vitis vinifera]              251   1e-64
ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III s...   251   1e-64
ref|XP_002300065.1| DNA-directed RNA polymerase family protein [...   242   7e-62
gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]          240   3e-61
gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlise...   235   9e-60
ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III s...   234   2e-59
ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [A...   230   4e-58
ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III s...   229   6e-58
ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III s...   229   6e-58
ref|XP_002531828.1| DNA-directed RNA polymerase III largest subu...   229   8e-58
ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III s...   228   1e-57
gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Tri...   227   3e-57

>ref|XP_006653556.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Oryza
           brachyantha]
          Length = 1389

 Score =  325 bits (833), Expect = 8e-87
 Identities = 156/230 (67%), Positives = 179/230 (77%), Gaps = 1/230 (0%)
 Frame = +1

Query: 1   RIYGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSI 180
           RIY  ++RPV NGLLDTRMGAANK G CSTCHG+F ECPGHFGYLKL LPVFNVG+FN I
Sbjct: 49  RIYNQEMRPVPNGLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCI 108

Query: 181 LNILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWCGSK 360
           L++LKCICK C R+LLVE DR  FLKKMRNPKAD   K+++MKK+RDKCKLS CPWCG  
Sbjct: 109 LDVLKCICKGCSRVLLVEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFI 168

Query: 361 NGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKV-LQIGHTLSPVNVFSLFKKML 537
           NGV KK ++ L I HD S+T+DGS +E+  A+SH   K+     H L P  V SLFK+M 
Sbjct: 169 NGVAKKGRAGLIILHDCSKTLDGSTEELKEALSHKKEKLSFSAVHMLDPATVLSLFKRMT 228

Query: 538 DEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           DEDCELLN+ DRPEK IVT IA+PPV IRPS FV  G  SNEDSIT+ILK
Sbjct: 229 DEDCELLNLGDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILK 278


>ref|NP_001053175.1| Os04g0492300 [Oryza sativa Japonica Group]
           gi|38346223|emb|CAE02045.2| OJ990528_30.3 [Oryza sativa
           Japonica Group] gi|38347455|emb|CAD41360.2|
           OSJNBa0076N16.24 [Oryza sativa Japonica Group]
           gi|113564746|dbj|BAF15089.1| Os04g0492300 [Oryza sativa
           Japonica Group] gi|116310339|emb|CAH67354.1|
           OSIGBa0130B08.14 [Oryza sativa Indica Group]
           gi|116310740|emb|CAH67535.1| H0425E08.3 [Oryza sativa
           Indica Group] gi|215768005|dbj|BAH00234.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218195112|gb|EEC77539.1| hypothetical protein
           OsI_16437 [Oryza sativa Indica Group]
          Length = 1383

 Score =  319 bits (817), Expect = 6e-85
 Identities = 153/230 (66%), Positives = 179/230 (77%), Gaps = 1/230 (0%)
 Frame = +1

Query: 1   RIYGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSI 180
           RIY  +++PV NGLLDTRMGAANK G CSTCHG+F ECPGHFGYLKL LPVFNVG+FN I
Sbjct: 49  RIYNHEMKPVPNGLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCI 108

Query: 181 LNILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWCGSK 360
           L++LKCICK C R+LL+E DR  FLKKMRNPKAD   K+++MKK+RDKCKLS CPWCG  
Sbjct: 109 LDVLKCICKSCSRVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFI 168

Query: 361 NGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKV-LQIGHTLSPVNVFSLFKKML 537
           NGV KK ++ L I HD S+T+DGS +E+  A+SH   K+ +     L P  V SLFK+M 
Sbjct: 169 NGVAKKGRAGLIILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRMT 228

Query: 538 DEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           DEDCELLN+ DRPEK IVT IA+PPV IRPS FV  G  SNEDSIT+ILK
Sbjct: 229 DEDCELLNLGDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILK 278


>gb|EEE61245.1| hypothetical protein OsJ_15297 [Oryza sativa Japonica Group]
          Length = 1321

 Score =  314 bits (805), Expect = 1e-83
 Identities = 153/231 (66%), Positives = 179/231 (77%), Gaps = 2/231 (0%)
 Frame = +1

Query: 1   RIYGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSI 180
           RIY  +++PV NGLLDTRMGAANK G CSTCHG+F ECPGHFGYLKL LPVFNVG+FN I
Sbjct: 49  RIYNHEMKPVPNGLLDTRMGAANKLGECSTCHGSFAECPGHFGYLKLALPVFNVGFFNCI 108

Query: 181 LNILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWCGSK 360
           L++LKCICK C R+LL+E DR  FLKKMRNPKAD   K+++MKK+RDKCKLS CPWCG  
Sbjct: 109 LDVLKCICKSCSRVLLMEKDRLEFLKKMRNPKADPLQKSAIMKKVRDKCKLSRCPWCGFI 168

Query: 361 NG-VIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKV-LQIGHTLSPVNVFSLFKKM 534
           NG V KK ++ L I HD S+T+DGS +E+  A+SH   K+ +     L P  V SLFK+M
Sbjct: 169 NGSVAKKGRAGLIILHDCSKTLDGSTEELRDALSHKKEKLSISAVRMLDPAIVLSLFKRM 228

Query: 535 LDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
            DEDCELLN+ DRPEK IVT IA+PPV IRPS FV  G  SNEDSIT+ILK
Sbjct: 229 TDEDCELLNLGDRPEKLIVTEIAVPPVPIRPSVFVAGGRMSNEDSITVILK 279


>ref|XP_003574945.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Brachypodium distachyon]
          Length = 1392

 Score =  304 bits (778), Expect = 2e-80
 Identities = 147/230 (63%), Positives = 176/230 (76%), Gaps = 1/230 (0%)
 Frame = +1

Query: 1   RIYGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSI 180
           RIYG D++PV NGLLD RMGAANK G C+TCHG++ ECPGHFGYLKL LPVFNVG+FN+I
Sbjct: 49  RIYGNDMKPVPNGLLDPRMGAANKFGECATCHGSYHECPGHFGYLKLVLPVFNVGFFNNI 108

Query: 181 LNILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWCGSK 360
           L++LK ICK C RILL E D++ FLKKMRNP+ +   K +LMKK+RDKCKLS CP CG  
Sbjct: 109 LDVLKSICKGCSRILLHEKDQREFLKKMRNPRLEPLHKAALMKKVRDKCKLSRCPSCGYI 168

Query: 361 NGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKV-LQIGHTLSPVNVFSLFKKML 537
           NGV KK +  L I HD S+T+DGS +E+ +A+SH   K+ +   HTL P  V SLFK+M 
Sbjct: 169 NGVAKKGRPGLLIVHDCSKTLDGSTEELRSALSHKKEKLSISSVHTLDPATVLSLFKRMT 228

Query: 538 DEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           DEDCELLN+ DRPEK I+T IA+PPV IRPS FV  G  SNED IT IL+
Sbjct: 229 DEDCELLNLGDRPEKLIITEIAVPPVPIRPSVFVGGGRMSNEDGITCILR 278


>ref|XP_002446717.1| hypothetical protein SORBIDRAFT_06g021120 [Sorghum bicolor]
           gi|241937900|gb|EES11045.1| hypothetical protein
           SORBIDRAFT_06g021120 [Sorghum bicolor]
          Length = 1391

 Score =  295 bits (755), Expect = 9e-78
 Identities = 139/230 (60%), Positives = 171/230 (74%), Gaps = 1/230 (0%)
 Frame = +1

Query: 1   RIYGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSI 180
           RIYG D++PV NGLLD RMG  NK   CSTCHG F++CPGHFGYLKL LPVFNVG+FN I
Sbjct: 49  RIYGHDMKPVPNGLLDPRMGVPNKREKCSTCHGEFSDCPGHFGYLKLALPVFNVGFFNCI 108

Query: 181 LNILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWCGSK 360
           L++LKCICK C R+LL E DR+ FLKKMRNP+AD   K++ MKK+RDKCKLS CP C  +
Sbjct: 109 LDVLKCICKSCSRVLLFEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYR 168

Query: 361 NGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKV-LQIGHTLSPVNVFSLFKKML 537
           NGV+KK ++ L + HD S+ +DG  +E+  A+ +   KV       L P  V SLF++M 
Sbjct: 169 NGVVKKGRAGLIVVHDCSKVLDGHTEELKNALQNKKEKVSANSVRVLDPATVLSLFRRMT 228

Query: 538 DEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           DEDCELLN+ DRPEK IV+ IA+PPV IRPS  V +  +SNEDSIT+ILK
Sbjct: 229 DEDCELLNLGDRPEKLIVSEIAVPPVPIRPSVVVGSSRTSNEDSITVILK 278


>tpg|DAA37181.1| TPA: putative DNA-directed RNA polymerase family protein [Zea mays]
          Length = 1030

 Score =  293 bits (750), Expect = 3e-77
 Identities = 138/230 (60%), Positives = 170/230 (73%), Gaps = 1/230 (0%)
 Frame = +1

Query: 1   RIYGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSI 180
           RIY  D+ PV NGLLD RMG   K G C+TCHG F++CPGHFGYLKL LPVFNVG+FN I
Sbjct: 49  RIYDRDMTPVPNGLLDPRMGIPTKRGKCNTCHGEFSDCPGHFGYLKLALPVFNVGFFNCI 108

Query: 181 LNILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWCGSK 360
           L++LKCICK C R+LL+E DR+ FLKKMRNP+AD   K++ MKK+RDKCKLS CP C  +
Sbjct: 109 LDVLKCICKSCSRVLLIEKDRREFLKKMRNPRADALQKSATMKKVRDKCKLSCCPRCDYR 168

Query: 361 NGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIG-HTLSPVNVFSLFKKML 537
           NGV+KK ++ L + HD S+ +DG  +E+  A+ +   KV       L P  V SLF++M+
Sbjct: 169 NGVVKKGRAGLIVVHDCSKVLDGHTEELKNALQNKKEKVSASSVLVLDPATVLSLFRRMI 228

Query: 538 DEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           DEDCELLN+ DRPEK IVT IA+PPV IRPS  V    +SNEDSIT+ILK
Sbjct: 229 DEDCELLNLGDRPEKLIVTEIAVPPVPIRPSVVVGNSRTSNEDSITVILK 278


>ref|XP_004976057.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Setaria italica]
          Length = 1397

 Score =  286 bits (732), Expect = 4e-75
 Identities = 140/233 (60%), Positives = 168/233 (72%), Gaps = 4/233 (1%)
 Frame = +1

Query: 1   RIYGADLRPVQNGLLDTRMGAANKAGV---CSTCHGNFTECPGHFGYLKLTLPVFNVGYF 171
           RIY  D++PV NGLLD RMG A+K      CSTCHG F ECPGHFGYLKL LPVFNVG+F
Sbjct: 49  RIYEHDMKPVPNGLLDMRMGLASKKDTELKCSTCHGPFAECPGHFGYLKLALPVFNVGFF 108

Query: 172 NSILNILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWC 351
           N IL++LKCICK C R+LL E DR+ FLKKMRNP+AD   K+++MKK+RDKCKL+ CP C
Sbjct: 109 NCILDVLKCICKGCSRVLLAEKDRREFLKKMRNPRADALQKSAIMKKVRDKCKLTCCPRC 168

Query: 352 GSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIG-HTLSPVNVFSLFK 528
             KNGV+KK +  L + HD S+ +DG  +E+  A+ H   KV       L P    SLF+
Sbjct: 169 EYKNGVVKKGRVGLIVIHDCSKILDGHTEELKNALQHKKEKVSTSSVRMLDPATALSLFR 228

Query: 529 KMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           +M+DEDCELLN+ DRPEK IVT IA+PPV IRPS  V    +SNEDSIT ILK
Sbjct: 229 RMVDEDCELLNLGDRPEKLIVTEIAVPPVPIRPSVVVGNTRTSNEDSITAILK 281


>ref|XP_003570766.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Brachypodium distachyon]
          Length = 1400

 Score =  280 bits (715), Expect = 4e-73
 Identities = 135/235 (57%), Positives = 173/235 (73%), Gaps = 6/235 (2%)
 Frame = +1

Query: 1   RIYGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSI 180
           RIY + L+PV NGLLD RMGA++K G C+TCHG++TECPGHFGY+KL LPVFNVGYFN I
Sbjct: 52  RIYDSSLKPVPNGLLDPRMGASDKCGECATCHGSYTECPGHFGYIKLALPVFNVGYFNKI 111

Query: 181 LNILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWCGSK 360
           L +LKCICK C R+LL E+  + FLKKMRNP+AD   ++S+M K+RDKC+ S C WCG  
Sbjct: 112 LAVLKCICKGCSRVLLTENIHQEFLKKMRNPRAD---RSSIMIKVRDKCRPSRCSWCGYI 168

Query: 361 NGVIKK-----TKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKV-LQIGHTLSPVNVFSL 522
           NG++KK      K ++ I HD S+ +D S +EV + +SH   K+ +   HTL PV V SL
Sbjct: 169 NGIVKKEGRRALKQTVVIVHDCSKNLDASTEEVRSVLSHKKEKLSITSVHTLDPVTVLSL 228

Query: 523 FKKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           F+++ DEDCELL + +RPE  I+T+IA+PPV IRPS FV     SNEDSIT IL+
Sbjct: 229 FRRITDEDCELLAIGERPENLIITDIAVPPVPIRPSRFVAGTTMSNEDSITSILR 283


>emb|CBI16226.3| unnamed protein product [Vitis vinifera]
          Length = 1819

 Score =  251 bits (641), Expect = 1e-64
 Identities = 124/236 (52%), Positives = 161/236 (68%), Gaps = 9/236 (3%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILN 186
           Y A+ +P++NGLLD RMG ANK G C+TC GNF +CPGH GYL L LPV+NVGY ++I++
Sbjct: 48  YDANRKPIENGLLDPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVD 107

Query: 187 ILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC-------KLSICP 345
           ILKCICK C R+LL E   K +LKKMR+ K +   K  LMKKI  KC       K   C 
Sbjct: 108 ILKCICKSCSRVLLDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCS 167

Query: 346 WCGSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHI--SSKVLQIGHTLSPVNVFS 519
            CG  NG++KK  S L I HD S+  DGS +E  +A+SH   S     +   L+PV V S
Sbjct: 168 RCGYMNGIVKKAVSVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLS 227

Query: 520 LFKKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           LFK+M+DEDC+LLN+++RPEK ++TNI +PP++IRPS F+D G  SNE+ +T  LK
Sbjct: 228 LFKRMMDEDCDLLNLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLK 283


>ref|XP_002284657.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like [Vitis
           vinifera]
          Length = 1383

 Score =  251 bits (641), Expect = 1e-64
 Identities = 124/236 (52%), Positives = 161/236 (68%), Gaps = 9/236 (3%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILN 186
           Y A+ +P++NGLLD RMG ANK G C+TC GNF +CPGH GYL L LPV+NVGY ++I++
Sbjct: 48  YDANRKPIENGLLDPRMGPANKNGTCATCLGNFRDCPGHCGYLTLALPVYNVGYLSTIVD 107

Query: 187 ILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC-------KLSICP 345
           ILKCICK C R+LL E   K +LKKMR+ K +   K  LMKKI  KC       K   C 
Sbjct: 108 ILKCICKSCSRVLLDEKASKDYLKKMRSQKMEALKKAELMKKIVQKCTAMASSKKAVKCS 167

Query: 346 WCGSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHI--SSKVLQIGHTLSPVNVFS 519
            CG  NG++KK  S L I HD S+  DGS +E  +A+SH   S     +   L+PV V S
Sbjct: 168 RCGYMNGIVKKAVSVLGIIHDRSKIADGSLEECSSAISHTKESKASFSVVDILNPVKVLS 227

Query: 520 LFKKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           LFK+M+DEDC+LLN+++RPEK ++TNI +PP++IRPS F+D G  SNE+ +T  LK
Sbjct: 228 LFKRMMDEDCDLLNLAERPEKLVLTNIGVPPIAIRPSVFMDGGTQSNENDVTERLK 283


>ref|XP_002300065.1| DNA-directed RNA polymerase family protein [Populus trichocarpa]
           gi|222847323|gb|EEE84870.1| DNA-directed RNA polymerase
           family protein [Populus trichocarpa]
          Length = 1394

 Score =  242 bits (618), Expect = 7e-62
 Identities = 124/236 (52%), Positives = 161/236 (68%), Gaps = 9/236 (3%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILN 186
           Y A+ + +  GLLDTRMGA NK G C TC G+FT+CPGHFGYL L LPV+NVGY ++IL+
Sbjct: 51  YDANKKAIVGGLLDTRMGAPNKHGTCQTCGGSFTDCPGHFGYLNLVLPVYNVGYLSTILD 110

Query: 187 ILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC------KLSICPW 348
           ILKCICK C R+L+ E  RK++LK+MRNP+ +   KN LMK+I  KC      K   C  
Sbjct: 111 ILKCICKSCSRVLVDEKLRKSYLKRMRNPRTEPLKKNELMKEIVKKCSSMASSKAVKCLR 170

Query: 349 CGSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIG---HTLSPVNVFS 519
           CG  NG++KK  S + I HD S+ IDG  +E  +A+ H       IG   + L+PV V S
Sbjct: 171 CGYMNGMVKKAGSVVGIIHDRSKLIDGYLEECKSAIGHTREARAPIGLATYILNPVRVLS 230

Query: 520 LFKKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           LF++M++EDCELL +  RPEK I+T IA+PP+SIRPS F + G+ SNE+ IT  LK
Sbjct: 231 LFQRMVEEDCELLYLQGRPEKLIITTIAVPPISIRPSVFTE-GSQSNENDITERLK 285


>gb|EOY20721.1| DNA-directed RNA polymerase [Theobroma cacao]
          Length = 1395

 Score =  240 bits (613), Expect = 3e-61
 Identities = 124/236 (52%), Positives = 155/236 (65%), Gaps = 9/236 (3%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILN 186
           Y    RP++ GLLD RMG ANK+G C+TCHGNF +CPGH+GYL L LPV+NVGY ++IL+
Sbjct: 46  YDPKSRPIEGGLLDPRMGPANKSGKCATCHGNFADCPGHYGYLSLALPVYNVGYLSTILD 105

Query: 187 ILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC------KLSICPW 348
           ILKCICK C RI+L E   K +LK+MR+PK D   K  +MK I  KC      K   C  
Sbjct: 106 ILKCICKSCSRIILDEKLCKDYLKRMRSPKIDALKKGDIMKSIVKKCSAMASSKAVKCWR 165

Query: 349 CGSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIG---HTLSPVNVFS 519
           CG  NG +KK  + L I HD S+  D S +E  +A+SH            + L+PV V S
Sbjct: 166 CGYVNGTVKKAVAMLGIIHDRSKINDNSLEEFRSAISHTKESKASFNVATYVLNPVKVLS 225

Query: 520 LFKKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           LFK+M D DCELL +SDRPEK I+TNIA+PP+ IRPS  +D G+ SNE+ IT  LK
Sbjct: 226 LFKRMTDLDCELLYLSDRPEKLIITNIAVPPIPIRPSVIMD-GSQSNENDITERLK 280


>gb|EPS62830.1| hypothetical protein M569_11956, partial [Genlisea aurea]
          Length = 1368

 Score =  235 bits (600), Expect = 9e-60
 Identities = 119/234 (50%), Positives = 151/234 (64%), Gaps = 7/234 (2%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILN 186
           Y A+ +PV NGLLD RMG  NK  VC TCHGNF ECPGH+GYL L LPV+NVGY ++I++
Sbjct: 44  YDANKKPVSNGLLDMRMGPPNKRSVCGTCHGNFQECPGHYGYLALALPVYNVGYLSNIVD 103

Query: 187 ILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC-------KLSICP 345
           ILKCICK C R+LL E +   FL+KMRNP+ +   K  L KKI  +C       KL+ CP
Sbjct: 104 ILKCICKNCSRVLLEEKEHHGFLRKMRNPRLEPLKKTDLFKKIVKRCNSKAGSNKLAKCP 163

Query: 346 WCGSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIGHTLSPVNVFSLF 525
            CG  NG++K  ++   + +D  R ID   +E  +A   + +       TL  + VF L 
Sbjct: 164 RCGHINGMVK--RAPYKVMYDRGRVIDSQMEECQSAGPSMKASRGNTTSTLDALFVFRLL 221

Query: 526 KKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           + MLDEDCELL + DRPEK +VTNI +PP +IRPS FVD G  SNE+ IT  LK
Sbjct: 222 RNMLDEDCELLYIHDRPEKLMVTNILVPPTAIRPSVFVDGGTQSNENDITERLK 275


>ref|XP_006488216.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           isoform X1 [Citrus sinensis]
           gi|568870034|ref|XP_006488217.1| PREDICTED: DNA-directed
           RNA polymerase III subunit rpc1-like isoform X2 [Citrus
           sinensis]
          Length = 1404

 Score =  234 bits (596), Expect = 2e-59
 Identities = 120/235 (51%), Positives = 157/235 (66%), Gaps = 8/235 (3%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILN 186
           Y ++  P++ GLLD RMG ANK+  C+TCHG F+ CPGH+GYL L LPV+NVGY ++IL+
Sbjct: 55  YSSNRVPIEGGLLDPRMGPANKSCTCATCHGGFSNCPGHYGYLTLALPVYNVGYLSTILD 114

Query: 187 ILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC-----KLSICPWC 351
           ILKCICK C R+LL E   K +LKKMRNPK +   K  LMK I  KC     K   CP C
Sbjct: 115 ILKCICKYCSRLLLEEKLCKDYLKKMRNPKMEALRKTDLMKSIVKKCSTMASKAVKCPRC 174

Query: 352 GSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIG---HTLSPVNVFSL 522
           G  NG++KK  + L I HD S+  + S  E  +A++H       +    + L+PVNV  L
Sbjct: 175 GYINGMVKKAVAVLGIIHDRSKVTE-SLQEFASAITHTKESKAAVNVATYILNPVNVLFL 233

Query: 523 FKKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           FK+M D DCE+L +S+RPEK I+TNIA+PP++IRPS  +D G+ SNE+ IT  LK
Sbjct: 234 FKRMTDTDCEVLYLSERPEKLIITNIAVPPIAIRPSVIMD-GSQSNENDITERLK 287


>ref|XP_006828249.1| hypothetical protein AMTR_s00023p00196820 [Amborella trichopoda]
           gi|548832896|gb|ERM95665.1| hypothetical protein
           AMTR_s00023p00196820 [Amborella trichopoda]
          Length = 1383

 Score =  230 bits (586), Expect = 4e-58
 Identities = 112/224 (50%), Positives = 156/224 (69%), Gaps = 4/224 (1%)
 Frame = +1

Query: 16  DLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILNILK 195
           DL+P ++G+LDTRMG + K+G C+TC G+F  CPGHFGYLKL LPVF+VGYF + + +L+
Sbjct: 55  DLKPAEHGVLDTRMGFSTKSGSCATCFGDFQTCPGHFGYLKLALPVFHVGYFRTTIIVLQ 114

Query: 196 CICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCK-LSICPWCGSKNGVI 372
           CICK C RILL E++RK FLKK+RNP+A++  KN  +KK+ DKCK + ICP CG  NGV+
Sbjct: 115 CICKSCARILLFEEERKQFLKKIRNPRAELHQKNDFVKKVIDKCKRVRICPRCGDYNGVV 174

Query: 373 KKTKSSLAIAHDFSR-TIDGSKDEVIAAMSH--ISSKVLQIGHTLSPVNVFSLFKKMLDE 543
           KK   +  I+HD S+   D    E   A+S    S+    +   L+P    +LF++M+DE
Sbjct: 175 KKAGPTFRISHDRSKANYDKLTKECKTAISQTKYSNSDFNMVENLTPQRALALFERMVDE 234

Query: 544 DCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSIT 675
           DC+LL + DRPEK I+T+IA+PP  IRP+    +G+  NE+ +T
Sbjct: 235 DCDLLYLYDRPEKLIITHIAVPPAGIRPT--YQSGSRLNENELT 276


>ref|XP_006365152.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           isoform X2 [Solanum tuberosum]
          Length = 1243

 Score =  229 bits (584), Expect = 6e-58
 Identities = 116/234 (49%), Positives = 151/234 (64%), Gaps = 7/234 (2%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILN 186
           Y +  +P+QNGLLD RMG  NK G C TCHGNF ECPGH+GYL L LPV+NVGY  ++++
Sbjct: 51  YESTKKPIQNGLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVD 110

Query: 187 ILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC-------KLSICP 345
           ILKCICK C  ILL + +R+  LKKMRNP+ +   K+ L KK+  +C       K + C 
Sbjct: 111 ILKCICKCCSSILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCS 170

Query: 346 WCGSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIGHTLSPVNVFSLF 525
            CG  NG++KK +  L I H+    I    +  I+    + + V  +   L P  V+SLF
Sbjct: 171 KCGYMNGMVKKLQ--LKITHEQGNRILDEINVAISDKRELRASV-SVPPELDPKVVYSLF 227

Query: 526 KKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           K M DEDCELL +SDRPEK +VT+I +PP++IRPS FVD G  SNE+ IT  LK
Sbjct: 228 KNMSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLK 281


>ref|XP_006365151.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           isoform X1 [Solanum tuberosum]
          Length = 1394

 Score =  229 bits (584), Expect = 6e-58
 Identities = 116/234 (49%), Positives = 151/234 (64%), Gaps = 7/234 (2%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILN 186
           Y +  +P+QNGLLD RMG  NK G C TCHGNF ECPGH+GYL L LPV+NVGY  ++++
Sbjct: 51  YESTKKPIQNGLLDPRMGPPNKNGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVD 110

Query: 187 ILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC-------KLSICP 345
           ILKCICK C  ILL + +R+  LKKMRNP+ +   K+ L KK+  +C       K + C 
Sbjct: 111 ILKCICKCCSSILLDDKERRDILKKMRNPRTEFLKKSELHKKVVKRCNAMAGGQKTATCS 170

Query: 346 WCGSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIGHTLSPVNVFSLF 525
            CG  NG++KK +  L I H+    I    +  I+    + + V  +   L P  V+SLF
Sbjct: 171 KCGYMNGMVKKLQ--LKITHEQGNRILDEINVAISDKRELRASV-SVPPELDPKVVYSLF 227

Query: 526 KKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           K M DEDCELL +SDRPEK +VT+I +PP++IRPS FVD G  SNE+ IT  LK
Sbjct: 228 KNMSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLK 281


>ref|XP_002531828.1| DNA-directed RNA polymerase III largest subunit, putative [Ricinus
           communis] gi|223528524|gb|EEF30548.1| DNA-directed RNA
           polymerase III largest subunit, putative [Ricinus
           communis]
          Length = 1383

 Score =  229 bits (583), Expect = 8e-58
 Identities = 122/237 (51%), Positives = 156/237 (65%), Gaps = 10/237 (4%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANK-AGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSIL 183
           Y +  +P+Q GLLD R+G A K +  C TC  +F ECPGHFGYL L LPVFNVGY ++IL
Sbjct: 21  YDSTRKPIQAGLLDPRLGPATKQSSACETCGADFHECPGHFGYLNLVLPVFNVGYMSNIL 80

Query: 184 NILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC------KLSICP 345
           +ILKCICK C RIL  E   KA LKKMRNP+ +   K+ L+KKI  KC      K   C 
Sbjct: 81  DILKCICKSCSRILYDEKLCKADLKKMRNPRIEHLRKSELVKKIVKKCSSMTSNKAVKCT 140

Query: 346 WCGSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIG---HTLSPVNVF 516
            CG  NG++KK  S L+I HD ++ +DG  +E  +A++H       I    + L+PV V 
Sbjct: 141 RCGDMNGMVKKAGSVLSIIHDRAKLVDGYLEECRSAIAHTKESRAPISLATYILTPVKVL 200

Query: 517 SLFKKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           SLFK++ +EDCE+L + DRPEK I+TNIA+PP+SIRPS F D G  SNE+ IT  LK
Sbjct: 201 SLFKRIPEEDCEVLGLYDRPEKLIITNIAVPPISIRPSVFTD-GLQSNENDITERLK 256


>ref|XP_004251448.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc1-like
           [Solanum lycopersicum]
          Length = 1390

 Score =  228 bits (582), Expect = 1e-57
 Identities = 114/234 (48%), Positives = 152/234 (64%), Gaps = 7/234 (2%)
 Frame = +1

Query: 7   YGADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILN 186
           Y +  +P+QNGLLD RMG  NK+G C TCHGNF ECPGH+GYL L LPV+NVGY  ++++
Sbjct: 51  YESTKKPIQNGLLDPRMGPPNKSGCCETCHGNFRECPGHYGYLVLALPVYNVGYLGTVVD 110

Query: 187 ILKCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKC-------KLSICP 345
           ILKCICK C  ILL + +R+  LKKMRNP+ +   K+ L K++  +C       K + C 
Sbjct: 111 ILKCICKCCSSILLDDKERRDILKKMRNPRTEFLKKSELHKRVVKRCNAMAGGQKTATCS 170

Query: 346 WCGSKNGVIKKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKVLQIGHTLSPVNVFSLF 525
            CG  NG++KK +  L I H+    I    +  I+    + + V  +   + P  V+SLF
Sbjct: 171 KCGYMNGMVKKLQ--LKITHEQGNRILDEINVAISDKRELRASV-SVPPEIDPKVVYSLF 227

Query: 526 KKMLDEDCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSITIILK 687
           K M DEDCELL +SDRPEK +VT+I +PP++IRPS FVD G  SNE+ IT  LK
Sbjct: 228 KNMSDEDCELLYLSDRPEKLLVTSIPVPPIAIRPSVFVDGGTQSNENDITERLK 281


>gb|EMS65169.1| DNA-directed RNA polymerase III subunit rpc1 [Triticum urartu]
          Length = 1248

 Score =  227 bits (578), Expect = 3e-57
 Identities = 119/243 (48%), Positives = 151/243 (62%), Gaps = 20/243 (8%)
 Frame = +1

Query: 13  ADLRPVQNGLLDTRMGAANKAGVCSTCHGNFTECPGHFGYLKLTLPVFNVGYFNSILNIL 192
           A+L  +  G      GAANK G C TCHG++TECPGHFGYLKL LPVFNVG+FN+IL+++
Sbjct: 56  AELHAIMEG------GAANKQGECGTCHGSYTECPGHFGYLKLALPVFNVGFFNNILDVV 109

Query: 193 KCICKVCGRILLVEDDRKAFLKKMRNPKADISMKNSLMKKIRDKCKLSICPWCGSKNGVI 372
           KCICK C R+LLVE DR+ FLKKMR P+A+  +K +LMKK+RDKCKLS CP         
Sbjct: 110 KCICKGCSRVLLVEKDRREFLKKMRQPRAEPLVKFALMKKVRDKCKLSRCP--------- 160

Query: 373 KKTKSSLAIAHDFSRTIDGSKDEVIAAMSHISSKV-LQIGHTLSPVNVFSLFKKMLDE-- 543
                         +T+DGS +E+ +A+SH   K+ +   HTL P  V SLF++M+DE  
Sbjct: 161 -------------CKTLDGSTEELRSALSHKKEKLAITSIHTLDPATVLSLFRRMIDEVD 207

Query: 544 -----------------DCELLNMSDRPEKFIVTNIAIPPVSIRPSAFVDAGASSNEDSI 672
                            DCELLN+ DRPEK I+T IA+PPV IRPS FV  G     D+ 
Sbjct: 208 ATLFSPYKSIYYFQPINDCELLNLGDRPEKLIITEIAVPPVPIRPSVFVGGGGGRMSDAP 267

Query: 673 TII 681
            +I
Sbjct: 268 CLI 270