BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00039392
         (268 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529628.1| pentatricopeptide repeat-containing protein,...    60   3e-08
ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containi...    53   4e-07

>ref|XP_002529628.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530913|gb|EEF32773.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 400

 Score = 60.1 bits (144), Expect(2) = 3e-08
 Identities = 32/61 (52%), Positives = 42/61 (68%), Gaps = 2/61 (3%)
 Frame = -2

Query: 180 PRPNEFIYPS-LKSCSDPRLACSLLSKSRFHDFTVVHTALLDSYSRF-SDTNAARCLFDE 7
           P+PN FI+P  LKSC + ++  S ++K  F  + VV TAL+DSYSRF SD   AR +FDE
Sbjct: 106 PKPNHFIFPHVLKSCQNTKVVHSQIAKLGFSQYPVVQTALVDSYSRFMSDIGCARQVFDE 165

Query: 6   M 4
           M
Sbjct: 166 M 166



 Score = 23.1 bits (48), Expect(2) = 3e-08
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -3

Query: 266 SALISAYASRPDPDSPAALRLFAAMLR 186
           +AL++AYAS PD    +A  L+  M+R
Sbjct: 77  TALVTAYASNPD-HHLSAFELYRDMVR 102


>ref|XP_004141609.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
           gi|449510706|ref|XP_004163739.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At1g33350-like [Cucumis sativus]
          Length = 563

 Score = 53.1 bits (126), Expect(2) = 4e-07
 Identities = 32/66 (48%), Positives = 42/66 (63%), Gaps = 8/66 (12%)
 Frame = -2

Query: 177 RPNEFIYPS-LKSCSD------PRLACSLLSKSRFHDFTVVHTALLDSYSRF-SDTNAAR 22
           RPN FIYP  L+SC D       ++  + + KS F  + VV TA++DSYSRF SD  +AR
Sbjct: 140 RPNNFIYPHVLRSCPDVLGSNATKMVHTQVLKSGFGGYPVVQTAIVDSYSRFSSDIGSAR 199

Query: 21  CLFDEM 4
            +FDEM
Sbjct: 200 QMFDEM 205



 Score = 26.2 bits (56), Expect(2) = 4e-07
 Identities = 14/27 (51%), Positives = 19/27 (70%)
 Frame = -3

Query: 266 SALISAYASRPDPDSPAALRLFAAMLR 186
           +A+I+AYAS PDP   AA  L+  M+R
Sbjct: 111 TAMITAYASYPDP--KAAFLLYRNMVR 135