BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00038894
         (399 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein...   125   8e-27
ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein...   125   8e-27
ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854...   125   8e-27
ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein...   124   2e-26
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein...   123   2e-26
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote...   122   4e-26
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao...   122   6e-26
ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein...   121   8e-26
ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein...   121   8e-26
ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein...   121   8e-26
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe...   121   1e-25
gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryz...   121   1e-25
gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japo...   121   1e-25
ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group] g...   121   1e-25
ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein...   120   2e-25
ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like ...   120   2e-25
gb|EMS56445.1| RNA polymerase-associated protein RTF1-like prote...   119   3e-25
ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea ma...   119   3e-25
gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegi...   119   4e-25
ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [S...   119   4e-25

>ref|XP_004304724.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
           vesca subsp. vesca]
          Length = 619

 Score =  125 bits (313), Expect = 8e-27
 Identities = 59/76 (77%), Positives = 67/76 (88%)
 Frame = -2

Query: 395 APVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRRH 216
           APVD+GT+SN LH+FELPISLA LQKFGGPQG  +GFMARKQ+IEAT G +VP+ DGRRH
Sbjct: 544 APVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDGRRH 603

Query: 215 PLILTVSDYKRRRGLL 168
            L L+VSDYKRRRGLL
Sbjct: 604 ALTLSVSDYKRRRGLL 619


>ref|XP_004293522.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Fragaria
           vesca subsp. vesca]
          Length = 657

 Score =  125 bits (313), Expect = 8e-27
 Identities = 59/76 (77%), Positives = 67/76 (88%)
 Frame = -2

Query: 395 APVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRRH 216
           APVD+GT+SN LH+FELPISLA LQKFGGPQG  +GFMARKQ+IEAT G +VP+ DGRRH
Sbjct: 582 APVDQGTSSNPLHNFELPISLATLQKFGGPQGAQEGFMARKQRIEATVGVRVPEDDGRRH 641

Query: 215 PLILTVSDYKRRRGLL 168
            L L+VSDYKRRRGLL
Sbjct: 642 ALTLSVSDYKRRRGLL 657


>ref|XP_003635274.1| PREDICTED: uncharacterized protein LOC100854406 [Vitis vinifera]
          Length = 493

 Score =  125 bits (313), Expect = 8e-27
 Identities = 61/77 (79%), Positives = 67/77 (87%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           SAPVD+GT SN+LHDFELPISLA LQKFGGPQG   GFMARKQ+IEAT G +VP++DGRR
Sbjct: 417 SAPVDQGTESNTLHDFELPISLAGLQKFGGPQGALAGFMARKQRIEATVGCRVPENDGRR 476

Query: 218 HPLILTVSDYKRRRGLL 168
           H L LTV DYKRRRGLL
Sbjct: 477 HALTLTVGDYKRRRGLL 493


>ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog
           [Brachypodium distachyon]
          Length = 658

 Score =  124 bits (310), Expect = 2e-26
 Identities = 56/77 (72%), Positives = 71/77 (92%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +AP+D GT +NSLH+FELPISL+VL+++GGP+G+ +G+MARKQKIEAT GYK+PD+DGRR
Sbjct: 582 NAPLDLGTETNSLHNFELPISLSVLEEYGGPKGLFEGYMARKQKIEATMGYKIPDNDGRR 641

Query: 218 HPLILTVSDYKRRRGLL 168
           H L L+VSDYKRRRGLL
Sbjct: 642 HALTLSVSDYKRRRGLL 658


>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform
           X1 [Glycine max] gi|571466984|ref|XP_006583809.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform X2 [Glycine max]
          Length = 656

 Score =  123 bits (309), Expect = 2e-26
 Identities = 60/77 (77%), Positives = 67/77 (87%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           SAPVD+GT SN LH+FELPISLA+LQKFGG QG   GFMARKQKIEAT G++V ++DGRR
Sbjct: 580 SAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQAGFMARKQKIEATVGFRVSENDGRR 639

Query: 218 HPLILTVSDYKRRRGLL 168
           H L LTVSDYKRRRGLL
Sbjct: 640 HALTLTVSDYKRRRGLL 656


>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus
           notabilis]
          Length = 658

 Score =  122 bits (307), Expect = 4e-26
 Identities = 58/77 (75%), Positives = 67/77 (87%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD+GT SN LH+FELPISL+VLQKFGGPQG   GFMARKQ+IEAT G +VP++DGRR
Sbjct: 582 NAPVDQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEATVGCRVPENDGRR 641

Query: 218 HPLILTVSDYKRRRGLL 168
           H L L+V DYKRRRGLL
Sbjct: 642 HALTLSVGDYKRRRGLL 658


>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
           gi|508781058|gb|EOY28314.1| PAF1 complex component
           isoform 1 [Theobroma cacao]
          Length = 660

 Score =  122 bits (305), Expect = 6e-26
 Identities = 59/77 (76%), Positives = 65/77 (84%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           SAPVD GT SN LHDFE+PISL  LQ+FGGPQG   GFMARKQ+IEAT G +VP++DGRR
Sbjct: 584 SAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRIEATVGCQVPENDGRR 643

Query: 218 HPLILTVSDYKRRRGLL 168
           H L LTVSDYKRRRGLL
Sbjct: 644 HALTLTVSDYKRRRGLL 660


>ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Oryza
           brachyantha]
          Length = 645

 Score =  121 bits (304), Expect = 8e-26
 Identities = 59/77 (76%), Positives = 67/77 (87%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD GT SN LH+FEL ISLA L++FGGP+G+  G+MARKQKIEAT GYKVPD+DGRR
Sbjct: 569 NAPVDLGTESNVLHNFELSISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDGRR 628

Query: 218 HPLILTVSDYKRRRGLL 168
           H L LTVSDYKRRRGLL
Sbjct: 629 HALTLTVSDYKRRRGLL 645


>ref|XP_006347073.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Solanum
           tuberosum]
          Length = 652

 Score =  121 bits (304), Expect = 8e-26
 Identities = 59/77 (76%), Positives = 67/77 (87%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD+GT SN+LHDF+LPISLAVLQKFGG QG   GFMARKQ+IEAT G  VP++DGRR
Sbjct: 576 NAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRR 635

Query: 218 HPLILTVSDYKRRRGLL 168
           H L L+VSDYKRRRGLL
Sbjct: 636 HALTLSVSDYKRRRGLL 652


>ref|XP_004232840.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform 1
           [Solanum lycopersicum] gi|460374083|ref|XP_004232841.1|
           PREDICTED: RNA polymerase-associated protein RTF1
           homolog isoform 2 [Solanum lycopersicum]
          Length = 645

 Score =  121 bits (304), Expect = 8e-26
 Identities = 59/77 (76%), Positives = 67/77 (87%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD+GT SN+LHDF+LPISLAVLQKFGG QG   GFMARKQ+IEAT G  VP++DGRR
Sbjct: 569 NAPVDQGTESNTLHDFDLPISLAVLQKFGGSQGGQAGFMARKQRIEATVGCSVPENDGRR 628

Query: 218 HPLILTVSDYKRRRGLL 168
           H L L+VSDYKRRRGLL
Sbjct: 629 HALTLSVSDYKRRRGLL 645


>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
          Length = 646

 Score =  121 bits (303), Expect = 1e-25
 Identities = 58/77 (75%), Positives = 66/77 (85%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           SAPVD GT SN +H+FELPISLA LQKFGGPQG  +GF+ARKQ+IEAT G +VP++DGRR
Sbjct: 570 SAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQEGFLARKQRIEATVGCRVPENDGRR 629

Query: 218 HPLILTVSDYKRRRGLL 168
           H L LTVSDYKRR GLL
Sbjct: 630 HALTLTVSDYKRRMGLL 646


>gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryza sativa Japonica
           Group] gi|77556035|gb|ABA98831.1| Plus-3 domain
           containing protein, expressed [Oryza sativa Japonica
           Group] gi|215697432|dbj|BAG91426.1| unnamed protein
           product [Oryza sativa Japonica Group]
          Length = 522

 Score =  121 bits (303), Expect = 1e-25
 Identities = 59/77 (76%), Positives = 67/77 (87%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD GT SN LH+FEL ISLA L++FGGP+G+  G+MARKQKIEAT GYKVPD+DGRR
Sbjct: 446 NAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDGRR 505

Query: 218 HPLILTVSDYKRRRGLL 168
           H L LTVSDYKRRRGLL
Sbjct: 506 HALTLTVSDYKRRRGLL 522


>gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japonica Group]
          Length = 653

 Score =  121 bits (303), Expect = 1e-25
 Identities = 59/77 (76%), Positives = 67/77 (87%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD GT SN LH+FEL ISLA L++FGGP+G+  G+MARKQKIEAT GYKVPD+DGRR
Sbjct: 577 NAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDGRR 636

Query: 218 HPLILTVSDYKRRRGLL 168
           H L LTVSDYKRRRGLL
Sbjct: 637 HALTLTVSDYKRRRGLL 653


>ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group]
           gi|113649443|dbj|BAF29955.1| Os12g0535900, partial
           [Oryza sativa Japonica Group]
          Length = 599

 Score =  121 bits (303), Expect = 1e-25
 Identities = 59/77 (76%), Positives = 67/77 (87%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD GT SN LH+FEL ISLA L++FGGP+G+  G+MARKQKIEAT GYKVPD+DGRR
Sbjct: 523 NAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYMARKQKIEATMGYKVPDNDGRR 582

Query: 218 HPLILTVSDYKRRRGLL 168
           H L LTVSDYKRRRGLL
Sbjct: 583 HALTLTVSDYKRRRGLL 599


>ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Setaria
           italica]
          Length = 650

 Score =  120 bits (301), Expect = 2e-25
 Identities = 58/77 (75%), Positives = 66/77 (85%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD GT SN LH FELPISL+ LQ+FGG +G+  G+MARKQKIEAT GYKVPD+DGRR
Sbjct: 574 NAPVDLGTESNVLHTFELPISLSALQEFGGAKGLFDGYMARKQKIEATMGYKVPDNDGRR 633

Query: 218 HPLILTVSDYKRRRGLL 168
           H L L+VSDYKRRRGLL
Sbjct: 634 HALTLSVSDYKRRRGLL 650


>ref|XP_003625428.1| RNA polymerase-associated protein RTF1-like protein [Medicago
           truncatula] gi|355500443|gb|AES81646.1| RNA
           polymerase-associated protein RTF1-like protein
           [Medicago truncatula]
          Length = 624

 Score =  120 bits (300), Expect = 2e-25
 Identities = 57/76 (75%), Positives = 65/76 (85%)
 Frame = -2

Query: 395 APVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRRH 216
           APVD GT SN LHDFELPISLA+LQKFGG +GV  GFMA+KQ+IE   G++VP++DGRRH
Sbjct: 549 APVDEGTESNVLHDFELPISLAMLQKFGGAKGVQAGFMAKKQRIEEVVGFRVPENDGRRH 608

Query: 215 PLILTVSDYKRRRGLL 168
            L LTVSDYKRRRGLL
Sbjct: 609 QLTLTVSDYKRRRGLL 624


>gb|EMS56445.1| RNA polymerase-associated protein RTF1-like protein [Triticum
           urartu]
          Length = 681

 Score =  119 bits (299), Expect = 3e-25
 Identities = 55/77 (71%), Positives = 68/77 (88%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +AP+D GT +N LH+FELPISLAVL+++GGP+G  + +MARKQKIEAT GYK+PD+DGRR
Sbjct: 605 NAPLDLGTETNPLHNFELPISLAVLEQYGGPKGQFEAYMARKQKIEATMGYKIPDNDGRR 664

Query: 218 HPLILTVSDYKRRRGLL 168
           H L L+VSDYKRRRGLL
Sbjct: 665 HALTLSVSDYKRRRGLL 681


>ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea mays]
           gi|223950353|gb|ACN29260.1| unknown [Zea mays]
           gi|413916604|gb|AFW56536.1| plus-3 domain-containing
           protein [Zea mays]
          Length = 650

 Score =  119 bits (299), Expect = 3e-25
 Identities = 57/77 (74%), Positives = 66/77 (85%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD GT SN LH FELPISL+ LQ+FGG +G+  G+MAR+QKIEAT GYKVPD+DGRR
Sbjct: 574 NAPVDLGTESNMLHTFELPISLSALQEFGGAKGLFDGYMARRQKIEATMGYKVPDNDGRR 633

Query: 218 HPLILTVSDYKRRRGLL 168
           H L L+VSDYKRRRGLL
Sbjct: 634 HALTLSVSDYKRRRGLL 650


>gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegilops tauschii]
          Length = 661

 Score =  119 bits (298), Expect = 4e-25
 Identities = 54/77 (70%), Positives = 68/77 (88%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +AP+D GT +N LH+FELPISLA+L+++GGP+G  + +MARKQKIEAT GYK+PD+DGRR
Sbjct: 585 NAPLDLGTETNPLHNFELPISLAILEQYGGPKGQFEAYMARKQKIEATMGYKIPDNDGRR 644

Query: 218 HPLILTVSDYKRRRGLL 168
           H L L+VSDYKRRRGLL
Sbjct: 645 HALTLSVSDYKRRRGLL 661


>ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [Sorghum bicolor]
           gi|241942942|gb|EES16087.1| hypothetical protein
           SORBIDRAFT_08g017010 [Sorghum bicolor]
          Length = 656

 Score =  119 bits (298), Expect = 4e-25
 Identities = 57/77 (74%), Positives = 66/77 (85%)
 Frame = -2

Query: 398 SAPVDRGTASNSLHDFELPISLAVLQKFGGPQGVHQGFMARKQKIEATYGYKVPDSDGRR 219
           +APVD GT SN LH FELPISL+ LQ+FGG +G+  G+MAR+QKIEAT GYKVPD+DGRR
Sbjct: 580 NAPVDLGTESNVLHTFELPISLSALQEFGGAKGLFDGYMARRQKIEATMGYKVPDNDGRR 639

Query: 218 HPLILTVSDYKRRRGLL 168
           H L L+VSDYKRRRGLL
Sbjct: 640 HALTLSVSDYKRRRGLL 656