BLASTX nr result
ID: Zingiber25_contig00038220
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00038220
(366 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_001047900.1| Os02g0711100 [Oryza sativa Japonica Group] g... 52 1e-09
ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containi... 44 3e-08
ref|XP_004173996.1| PREDICTED: pentatricopeptide repeat-containi... 44 3e-08
dbj|BAJ94382.1| predicted protein [Hordeum vulgare subsp. vulgare] 46 7e-08
emb|CBI33534.3| unnamed protein product [Vitis vinifera] 44 3e-07
ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containi... 44 3e-07
ref|XP_003570219.1| PREDICTED: pentatricopeptide repeat-containi... 43 4e-07
ref|XP_002532468.1| pentatricopeptide repeat-containing protein,... 42 1e-06
gb|EOY03976.1| Tetratricopeptide repeat-like superfamily protein... 43 1e-06
ref|XP_002301697.1| predicted protein [Populus trichocarpa] 41 2e-06
ref|XP_006383312.1| hypothetical protein POPTR_0005s14380g, part... 41 2e-06
ref|XP_006482140.1| PREDICTED: pentatricopeptide repeat-containi... 39 2e-06
gb|EMJ16546.1| hypothetical protein PRUPE_ppa005397mg [Prunus pe... 41 2e-06
ref|XP_002453585.1| hypothetical protein SORBIDRAFT_04g008520 [S... 42 3e-06
ref|XP_004503139.1| PREDICTED: pentatricopeptide repeat-containi... 42 4e-06
ref|XP_004307088.1| PREDICTED: pentatricopeptide repeat-containi... 41 5e-06
>ref|NP_001047900.1| Os02g0711100 [Oryza sativa Japonica Group]
gi|41052650|dbj|BAD07498.1| pentatricopeptide (PPR)
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|41052866|dbj|BAD07780.1| pentatricopeptide
(PPR) repeat-containing protein-like [Oryza sativa
Japonica Group] gi|113537431|dbj|BAF09814.1|
Os02g0711100 [Oryza sativa Japonica Group]
gi|125540864|gb|EAY87259.1| hypothetical protein
OsI_08660 [Oryza sativa Indica Group]
gi|215687282|dbj|BAG91847.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 489
Score = 52.4 bits (124), Expect(2) = 1e-09
Identities = 30/45 (66%), Positives = 34/45 (75%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAVA 178
L EILASS P VD ALDDA VRV+S DVE +L+ SY+ P AAVA
Sbjct: 47 LCEILASSAPD-VDAALDDADVRVTSSDVEQVLRFSYAHPRAAVA 90
Score = 35.8 bits (81), Expect(2) = 1e-09
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 213 QHSPYAWSLMFDLLGKNLL 269
QHSPY+W+L+ DLLGKN L
Sbjct: 103 QHSPYSWNLVVDLLGKNRL 121
>ref|XP_004140363.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cucumis sativus]
Length = 519
Score = 43.5 bits (101), Expect(2) = 3e-08
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +2
Query: 50 EILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
EI+A+S V++AL+D G+ + QDVE +LKLSY P ++V
Sbjct: 79 EIIANSPSLDVEKALEDTGIHATQQDVEEVLKLSYRFPGSSV 120
Score = 39.7 bits (91), Expect(2) = 3e-08
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKNL 266
DQHSPYAW+L+ D+LGKNL
Sbjct: 132 DQHSPYAWNLIIDMLGKNL 150
>ref|XP_004173996.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like, partial [Cucumis sativus]
Length = 391
Score = 43.5 bits (101), Expect(2) = 3e-08
Identities = 20/42 (47%), Positives = 30/42 (71%)
Frame = +2
Query: 50 EILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
EI+A+S V++AL+D G+ + QDVE +LKLSY P ++V
Sbjct: 79 EIIANSPSLDVEKALEDTGIHATQQDVEEVLKLSYRFPGSSV 120
Score = 39.7 bits (91), Expect(2) = 3e-08
Identities = 15/19 (78%), Positives = 18/19 (94%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKNL 266
DQHSPYAW+L+ D+LGKNL
Sbjct: 132 DQHSPYAWNLIIDMLGKNL 150
>dbj|BAJ94382.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 488
Score = 45.8 bits (107), Expect(2) = 7e-08
Identities = 26/45 (57%), Positives = 32/45 (71%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAVA 178
L EILASS S V+ ALDDA VRV++ DVE +L+ SY+ P A A
Sbjct: 46 LCEILASS-ASDVEAALDDADVRVTTSDVEQVLRFSYAHPRGAAA 89
Score = 36.2 bits (82), Expect(2) = 7e-08
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 213 QHSPYAWSLMFDLLGKNLL 269
QHSPY+W+L+ DLLGKN L
Sbjct: 102 QHSPYSWNLVIDLLGKNRL 120
>emb|CBI33534.3| unnamed protein product [Vitis vinifera]
Length = 506
Score = 43.5 bits (101), Expect(2) = 3e-07
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
L EI+A++ S+V+ L D +RVS +DVE LKLSY P +AV
Sbjct: 66 LCEIIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAV 109
Score = 36.2 bits (82), Expect(2) = 3e-07
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKNLL 269
D HSPY+W+L+ D+LGKN L
Sbjct: 121 DNHSPYSWNLVVDMLGKNFL 140
>ref|XP_002272930.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Vitis vinifera]
Length = 502
Score = 43.5 bits (101), Expect(2) = 3e-07
Identities = 22/44 (50%), Positives = 30/44 (68%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
L EI+A++ S+V+ L D +RVS +DVE LKLSY P +AV
Sbjct: 62 LCEIIANTPSSTVEEVLHDTAIRVSPEDVEDSLKLSYGFPGSAV 105
Score = 36.2 bits (82), Expect(2) = 3e-07
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKNLL 269
D HSPY+W+L+ D+LGKN L
Sbjct: 117 DNHSPYSWNLVVDMLGKNFL 136
>ref|XP_003570219.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Brachypodium distachyon]
Length = 488
Score = 43.1 bits (100), Expect(2) = 4e-07
Identities = 24/45 (53%), Positives = 31/45 (68%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAVA 178
L EILAS + V+ ALDDA VRV++ DVE +L+ SY+ P A A
Sbjct: 46 LCEILASP-ATDVEAALDDAAVRVTTSDVEQVLRFSYAHPRGAAA 89
Score = 36.2 bits (82), Expect(2) = 4e-07
Identities = 14/19 (73%), Positives = 17/19 (89%)
Frame = +3
Query: 213 QHSPYAWSLMFDLLGKNLL 269
QHSPY+W+L+ DLLGKN L
Sbjct: 102 QHSPYSWNLVIDLLGKNRL 120
>ref|XP_002532468.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223527826|gb|EEF29924.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 510
Score = 41.6 bits (96), Expect(2) = 1e-06
Identities = 22/44 (50%), Positives = 29/44 (65%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
L EI+A S+V+ LD+ G+ VS DVE ++KLSYS P AV
Sbjct: 70 LCEIIAKIPSSTVETILDETGLYVSQYDVEQVIKLSYSFPGPAV 113
Score = 36.6 bits (83), Expect(2) = 1e-06
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKNLL 269
D HSPY+W+L+ DLLGKN L
Sbjct: 125 DNHSPYSWNLVVDLLGKNCL 144
>gb|EOY03976.1| Tetratricopeptide repeat-like superfamily protein, putative
[Theobroma cacao]
Length = 485
Score = 43.1 bits (100), Expect(2) = 1e-06
Identities = 22/44 (50%), Positives = 32/44 (72%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
L EI++++ S+V+ L+ AG+RV+ DVE +LKLSYS P AV
Sbjct: 45 LCEIISTTPSSTVEALLEGAGLRVTQPDVENVLKLSYSFPSQAV 88
Score = 35.0 bits (79), Expect(2) = 1e-06
Identities = 13/17 (76%), Positives = 16/17 (94%)
Frame = +3
Query: 213 QHSPYAWSLMFDLLGKN 263
QHSPY+W+L+ DLLGKN
Sbjct: 101 QHSPYSWNLVVDLLGKN 117
>ref|XP_002301697.1| predicted protein [Populus trichocarpa]
Length = 499
Score = 41.2 bits (95), Expect(2) = 2e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
L EI+A++ +V+ LD +RV DVE +LKLSYS P +AV
Sbjct: 55 LCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSPGSAV 98
Score = 35.8 bits (81), Expect(2) = 2e-06
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKN 263
D+HSPY+W+L+ DLLGKN
Sbjct: 110 DKHSPYSWNLVVDLLGKN 127
>ref|XP_006383312.1| hypothetical protein POPTR_0005s14380g, partial [Populus
trichocarpa] gi|550338919|gb|ERP61109.1| hypothetical
protein POPTR_0005s14380g, partial [Populus trichocarpa]
Length = 497
Score = 41.2 bits (95), Expect(2) = 2e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
L EI+A++ +V+ LD +RV DVE +LKLSYS P +AV
Sbjct: 55 LCEIIANTPSHNVESVLDATVIRVKQTDVEQVLKLSYSSPGSAV 98
Score = 35.8 bits (81), Expect(2) = 2e-06
Identities = 13/18 (72%), Positives = 17/18 (94%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKN 263
D+HSPY+W+L+ DLLGKN
Sbjct: 110 DKHSPYSWNLVVDLLGKN 127
>ref|XP_006482140.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Citrus sinensis]
Length = 482
Score = 38.9 bits (89), Expect(2) = 2e-06
Identities = 22/53 (41%), Positives = 31/53 (58%)
Frame = +2
Query: 17 PPHRASACFLFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
PP + C EI+A++ +V+ LD +RVS + VE +LK SYS P AV
Sbjct: 36 PPTIKTLC---EIIANTPSPTVEDVLDKTLIRVSQETVEQVLKFSYSHPGPAV 85
Score = 38.1 bits (87), Expect(2) = 2e-06
Identities = 15/20 (75%), Positives = 18/20 (90%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKNLL 269
D+HSPYAW+L+ DLLGKN L
Sbjct: 97 DKHSPYAWNLVVDLLGKNCL 116
>gb|EMJ16546.1| hypothetical protein PRUPE_ppa005397mg [Prunus persica]
Length = 463
Score = 40.8 bits (94), Expect(2) = 2e-06
Identities = 21/44 (47%), Positives = 30/44 (68%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
L EI+A ++ SV+ L + VRV+ +DVE +LKLSY+ P AV
Sbjct: 23 LCEIVAKTHTLSVEERLAETSVRVTQEDVEEVLKLSYAFPGPAV 66
Score = 36.2 bits (82), Expect(2) = 2e-06
Identities = 14/18 (77%), Positives = 16/18 (88%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKN 263
D HSPYAW+L+ DLLGKN
Sbjct: 78 DYHSPYAWNLVVDLLGKN 95
>ref|XP_002453585.1| hypothetical protein SORBIDRAFT_04g008520 [Sorghum bicolor]
gi|241933416|gb|EES06561.1| hypothetical protein
SORBIDRAFT_04g008520 [Sorghum bicolor]
Length = 436
Score = 42.4 bits (98), Expect(2) = 3e-06
Identities = 24/54 (44%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Frame = +2
Query: 20 PHRASACFLFEILASSNPSSVDRALDDAGVR-VSSQDVEAMLKLSYSQPDAAVA 178
PH+ ++ILAS +D ALD+A +R V++ DVE +L LSY+ P AA A
Sbjct: 27 PHKTR--IFYDILASRADDDMDAALDEADIRGVTTADVEQVLHLSYAHPHAAAA 78
Score = 34.3 bits (77), Expect(2) = 3e-06
Identities = 18/44 (40%), Positives = 24/44 (54%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKNLLHRLPPR*RTDIS*LGPLRPQEDDL 341
D HSPY+W+L+ D+LG N L T I PL+ DD+
Sbjct: 91 DNHSPYSWNLVVDILGANRLF-------TRIPGCSPLKAFMDDM 127
>ref|XP_004503139.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Cicer arietinum]
Length = 482
Score = 42.4 bits (98), Expect(2) = 4e-06
Identities = 24/59 (40%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Frame = +2
Query: 2 SATSPPPHRASAC-FLFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
S SP P S LFEI++++ +V+++L+++ + V+ QDVE +LKLSY P AV
Sbjct: 27 SPDSPKPLPLSKIKSLFEIISTNPSLTVEKSLEESSINVTPQDVEQVLKLSYRFPAQAV 85
Score = 33.9 bits (76), Expect(2) = 4e-06
Identities = 12/18 (66%), Positives = 16/18 (88%)
Frame = +3
Query: 216 HSPYAWSLMFDLLGKNLL 269
H+PYAW+L+ D+LGKN L
Sbjct: 99 HTPYAWNLVIDILGKNCL 116
>ref|XP_004307088.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
mitochondrial-like [Fragaria vesca subsp. vesca]
Length = 491
Score = 40.8 bits (94), Expect(2) = 5e-06
Identities = 21/44 (47%), Positives = 29/44 (65%)
Frame = +2
Query: 44 LFEILASSNPSSVDRALDDAGVRVSSQDVEAMLKLSYSQPDAAV 175
L I+A + SV+ L+D G+RVS DVE +LKLSY+ P A+
Sbjct: 50 LCAIVAEIHCLSVEETLNDTGIRVSQHDVEEVLKLSYAFPGPAL 93
Score = 35.0 bits (79), Expect(2) = 5e-06
Identities = 13/18 (72%), Positives = 16/18 (88%)
Frame = +3
Query: 210 DQHSPYAWSLMFDLLGKN 263
+ HSPYAW+L+ DLLGKN
Sbjct: 105 EHHSPYAWNLVVDLLGKN 122