BLASTX nr result
ID: Zingiber25_contig00038196
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00038196
(317 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa... 171 1e-40
gb|AAD17357.1| contains similarity to retrovirus-related polypro... 161 7e-38
gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-... 160 1e-37
dbj|BAA22288.1| polyprotein [Oryza australiensis] 160 2e-37
gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Jap... 156 3e-36
gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subc... 155 7e-36
gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group] 155 7e-36
gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subc... 154 9e-36
emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group] 154 9e-36
gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group] 154 9e-36
emb|CAE03687.2| OSJNBb0026E15.5 [Oryza sativa Japonica Group] 154 2e-35
gb|ADB85429.1| putative retrotransposon protein [Phyllostachys e... 152 4e-35
gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subc... 151 1e-34
gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Ja... 149 5e-34
gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subc... 149 5e-34
gb|ADB85411.1| putative retrotransposon protein [Phyllostachys e... 142 6e-32
gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subc... 140 1e-31
gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group] 140 1e-31
gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subc... 139 4e-31
gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group] 139 4e-31
>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
putative retrotransposon protein [Arabidopsis thaliana]
Length = 964
Score = 171 bits (432), Expect = 1e-40
Identities = 83/105 (79%), Positives = 86/105 (81%)
Frame = +1
Query: 1 RYFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEF 180
+YFITFTDDFSRYGYVYLM H NEVQNQ GKSIK LRSDRGGEYLS F
Sbjct: 160 QYFITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVF 219
Query: 181 RDYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
D+L ECGI+SQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL
Sbjct: 220 SDHLRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 264
>gb|AAD17357.1| contains similarity to retrovirus-related polyproteins [Arabidopsis
thaliana] gi|7267382|emb|CAB77943.1| putative transposon
protein [Arabidopsis thaliana]
Length = 769
Score = 161 bits (408), Expect = 7e-38
Identities = 79/105 (75%), Positives = 86/105 (81%)
Frame = +1
Query: 1 RYFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEF 180
+YFITFTDDF+RYGYVYLM H NEV+N+LGKSIK LRSDRGGEYLS F
Sbjct: 192 QYFITFTDDFNRYGYVYLMKHKLESFEKSKEFQNEVKNKLGKSIKALRSDRGGEYLSQVF 251
Query: 181 RDYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
D+L ECGI+SQLTPPGTPQ NGVSERRN+TLLDMVRSMMSHTDL
Sbjct: 252 SDHLRECGIVSQLTPPGTPQGNGVSERRNQTLLDMVRSMMSHTDL 296
>gb|AAX94813.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77550379|gb|ABA93176.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 938
Score = 160 bits (406), Expect = 1e-37
Identities = 79/104 (75%), Positives = 84/104 (80%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFT+DFSRYGYVYLM H NEVQN LGK+IK LRSDRGGEYLS EF
Sbjct: 402 YFITFTNDFSRYGYVYLMRHKSDSFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFG 461
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L ECGI+ QLTPPGTPQWNGVSERRNRTLLDMVRSMMS TDL
Sbjct: 462 NHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQTDL 505
>dbj|BAA22288.1| polyprotein [Oryza australiensis]
Length = 1317
Score = 160 bits (404), Expect = 2e-37
Identities = 76/105 (72%), Positives = 85/105 (80%)
Frame = +1
Query: 1 RYFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEF 180
+YFITFTDDFSRYGY+YLM H NEVQN LGK+IK LRSDRGGEY+S EF
Sbjct: 516 QYFITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEF 575
Query: 181 RDYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L +CGI+ QLTPPGTPQWNGVSERRNRTLLDMVRSMMS +DL
Sbjct: 576 GNHLKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDL 620
>gb|AAV85747.1| Integrase core domain, putative [Oryza sativa Japonica Group]
gi|62701883|gb|AAX92956.1| retrotransposon protein,
putative, Ty1-copia sub-class [Oryza sativa Japonica
Group] gi|108864259|gb|ABA92827.2| retrotransposon
protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1184
Score = 156 bits (394), Expect = 3e-36
Identities = 77/104 (74%), Positives = 82/104 (78%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YF TFTDDFSRYGYVYLM H NEVQN LGK+IK LRSDRGGEYLS EF
Sbjct: 493 YFFTFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLGKTIKYLRSDRGGEYLSLEFG 552
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L ECGI+ QLTPPGTPQWNGVSE RNRTLLDMVRSMMS T+L
Sbjct: 553 NHLKECGIVPQLTPPGTPQWNGVSEWRNRTLLDMVRSMMSQTNL 596
>gb|ABF97213.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1142
Score = 155 bits (391), Expect = 7e-36
Identities = 76/104 (73%), Positives = 82/104 (78%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTDDFS+YGYVYLM H NEVQN LGK+IK LRSDRGGEYLS EF
Sbjct: 569 YFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFG 628
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++ ECGI+ QLTPPGTPQWN VSERRNRTLLDMVRSMMS T+L
Sbjct: 629 NHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMVRSMMSQTNL 672
>gb|AAS01945.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1084
Score = 155 bits (391), Expect = 7e-36
Identities = 76/104 (73%), Positives = 82/104 (78%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTDDFS+YGYVYLM H NEVQN LGK+IK LRSDRGGEYLS EF
Sbjct: 496 YFITFTDDFSKYGYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFG 555
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++ ECGI+ QLTPPGTPQWN VSERRNRTLLDMVRSMMS T+L
Sbjct: 556 NHRKECGIVPQLTPPGTPQWNAVSERRNRTLLDMVRSMMSQTNL 599
>gb|ABF97047.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1248
Score = 154 bits (390), Expect = 9e-36
Identities = 75/104 (72%), Positives = 82/104 (78%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTD+FSRYGYVYLM H NEVQN LGK+IK LRSDRGGEYLS E+
Sbjct: 482 YFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDRGGEYLSLEYG 541
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L ECGI+ QLTPPGTPQWN VSERRNR LLDMVRSMMS TD+
Sbjct: 542 NHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQTDM 585
>emb|CAE03845.1| OSJNBb0089K06.4 [Oryza sativa Japonica Group]
Length = 873
Score = 154 bits (390), Expect = 9e-36
Identities = 77/104 (74%), Positives = 82/104 (78%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTDDFSRY YVYLM H NEVQN LGK+IK LRSDRGGEYLS EF
Sbjct: 311 YFITFTDDFSRYVYVYLMRHKSESFEKFKEFQNEVQNHLGKTIKYLRSDRGGEYLSLEFG 370
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L ECGI+ QLTPPGTPQWN VSERRNRTLLDMV+SMMS TDL
Sbjct: 371 NHLKECGIVPQLTPPGTPQWNRVSERRNRTLLDMVQSMMSQTDL 414
>gb|AAP44605.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1161
Score = 154 bits (390), Expect = 9e-36
Identities = 75/104 (72%), Positives = 82/104 (78%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTD+FSRYGYVYLM H NEVQN LGK+IK LRSDRGGEYLS E+
Sbjct: 395 YFITFTDEFSRYGYVYLMRHKSESFEKFQEFQNEVQNHLGKTIKYLRSDRGGEYLSLEYG 454
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L ECGI+ QLTPPGTPQWN VSERRNR LLDMVRSMMS TD+
Sbjct: 455 NHLKECGIVPQLTPPGTPQWNAVSERRNRILLDMVRSMMSQTDM 498
>emb|CAE03687.2| OSJNBb0026E15.5 [Oryza sativa Japonica Group]
Length = 448
Score = 154 bits (388), Expect = 2e-35
Identities = 77/105 (73%), Positives = 82/105 (78%)
Frame = +1
Query: 1 RYFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEF 180
RYFITFTDDFSRYGYVYLM H NEVQN L K+IK LRSDRGGEYL+ EF
Sbjct: 95 RYFITFTDDFSRYGYVYLMRHKSEYFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYLTLEF 154
Query: 181 RDYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L E GI+ QLTPPG PQWNGVSERRNRTLLDMVRSMMS TDL
Sbjct: 155 GNHLKEGGIVPQLTPPGMPQWNGVSERRNRTLLDMVRSMMSQTDL 199
>gb|ADB85429.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1313
Score = 152 bits (384), Expect = 4e-35
Identities = 73/105 (69%), Positives = 83/105 (79%)
Frame = +1
Query: 1 RYFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEF 180
+YFITFTDD+SRYGY+YLM H NEVQNQLGK+IK LRSDRGGE+LS EF
Sbjct: 604 QYFITFTDDYSRYGYIYLMRHKSESFEKFKEFQNEVQNQLGKTIKSLRSDRGGEFLSQEF 663
Query: 181 RDYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L +CGI+ QLTPP TPQWNGVSER NRTLLDMVR MMS +DL
Sbjct: 664 GNHLKQCGIVPQLTPPSTPQWNGVSERCNRTLLDMVRLMMSQSDL 708
>gb|ABA98367.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1745
Score = 151 bits (381), Expect = 1e-34
Identities = 75/104 (72%), Positives = 81/104 (77%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTDDFSRYGYVYLM H NEVQN L K+IK LRSD GGEYLS EF
Sbjct: 993 YFITFTDDFSRYGYVYLMRHKSESFEKFKEFQNEVQNHLRKTIKYLRSDHGGEYLSLEFG 1052
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L CGI+ QLTPPGTPQWNGVSERRNRTLL+MVRSMMS T+L
Sbjct: 1053 NHLKGCGIVPQLTPPGTPQWNGVSERRNRTLLNMVRSMMSQTNL 1096
>gb|AAM74249.1|AC074355_11 Putative retroelement [Oryza sativa Japonica Group]
Length = 700
Score = 149 bits (375), Expect = 5e-34
Identities = 75/104 (72%), Positives = 80/104 (76%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFI FTDDFSRYGYVYLM H NEVQN L K+IK LRSDRGGEY S EF
Sbjct: 66 YFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSLEFG 125
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L ECGI+ QLTPPGTPQ NGVS+RRNRTLLDMVRSMMS TDL
Sbjct: 126 NHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDL 169
>gb|AAP52343.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 655
Score = 149 bits (375), Expect = 5e-34
Identities = 75/104 (72%), Positives = 80/104 (76%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFI FTDDFSRYGYVYLM H NEVQN L K+IK LRSDRGGEY S EF
Sbjct: 66 YFIIFTDDFSRYGYVYLMRHKSESFEKFKEFHNEVQNHLDKTIKYLRSDRGGEYWSLEFG 125
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
++L ECGI+ QLTPPGTPQ NGVS+RRNRTLLDMVRSMMS TDL
Sbjct: 126 NHLKECGIVPQLTPPGTPQLNGVSKRRNRTLLDMVRSMMSQTDL 169
>gb|ADB85411.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 566
Score = 142 bits (357), Expect = 6e-32
Identities = 69/94 (73%), Positives = 74/94 (78%)
Frame = +1
Query: 34 RYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFRDYLAECGILS 213
RY YVYLM H NEVQNQLGK+IK LRSDRGGEYL HEF D+L +CGI+
Sbjct: 171 RYSYVYLMIHKLESFEKFKEFQNEVQNQLGKTIKCLRSDRGGEYLRHEFGDHLNKCGIVP 230
Query: 214 QLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDL 315
QLTPPGTPQWNGVSERRNRTLLDMVRSMMS +DL
Sbjct: 231 QLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDL 264
>gb|ABF97393.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1073
Score = 140 bits (354), Expect = 1e-31
Identities = 69/95 (72%), Positives = 74/95 (77%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTDDFSR GYVYLM H NE QN LGK+IK LRSDRGGEYLS EF
Sbjct: 609 YFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNEEQNYLGKTIKYLRSDRGGEYLSLEFG 668
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMV 288
++L ECGI+ QLTPPGTPQWNGVSERRNRTLLDM+
Sbjct: 669 NHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDML 703
>gb|AAR06328.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1063
Score = 140 bits (354), Expect = 1e-31
Identities = 69/95 (72%), Positives = 74/95 (77%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTDDFSR GYVYLM H NE QN LGK+IK LRSDRGGEYLS EF
Sbjct: 609 YFITFTDDFSRCGYVYLMRHKSESVEKFKKFQNEEQNYLGKTIKYLRSDRGGEYLSLEFG 668
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMV 288
++L ECGI+ QLTPPGTPQWNGVSERRNRTLLDM+
Sbjct: 669 NHLKECGIVPQLTPPGTPQWNGVSERRNRTLLDML 703
>gb|ABF96491.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 767
Score = 139 bits (350), Expect = 4e-31
Identities = 68/95 (71%), Positives = 74/95 (77%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTDDFSRYG VYLM H NEVQN LGK+IK LRSDRGGEYLS EF
Sbjct: 382 YFITFTDDFSRYGCVYLMRHKSESFEKFKEFQNEVQNNLGKTIKYLRSDRGGEYLSLEFG 441
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMV 288
++L ECGI+ QLTPPGTPQWN VSE+RNRTLLDM+
Sbjct: 442 NHLKECGIIPQLTPPGTPQWNWVSEQRNRTLLDML 476
>gb|AAP03364.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 657
Score = 139 bits (350), Expect = 4e-31
Identities = 68/95 (71%), Positives = 74/95 (77%)
Frame = +1
Query: 4 YFITFTDDFSRYGYVYLMTHXXXXXXXXXXXXNEVQNQLGKSIKVLRSDRGGEYLSHEFR 183
YFITFTDDFSRYG VYLM H NEVQN LGK+IK LRSDRGGEYLS EF
Sbjct: 272 YFITFTDDFSRYGCVYLMRHKSESFEKFKEFQNEVQNNLGKTIKYLRSDRGGEYLSLEFG 331
Query: 184 DYLAECGILSQLTPPGTPQWNGVSERRNRTLLDMV 288
++L ECGI+ QLTPPGTPQWN VSE+RNRTLLDM+
Sbjct: 332 NHLKECGIIPQLTPPGTPQWNWVSEQRNRTLLDML 366