BLASTX nr result
ID: Zingiber25_contig00037951
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00037951
(940 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004296451.1| PREDICTED: pentatricopeptide repeat-containi... 225 2e-56
gb|EMJ16134.1| hypothetical protein PRUPE_ppa001374mg [Prunus pe... 213 6e-53
gb|EOY31850.1| Tetratricopeptide repeat (TPR)-like superfamily p... 211 3e-52
ref|XP_002533731.1| pentatricopeptide repeat-containing protein,... 209 1e-51
ref|XP_006453335.1| hypothetical protein CICLE_v10007460mg [Citr... 204 5e-50
gb|EXC05166.1| hypothetical protein L484_003973 [Morus notabilis] 203 9e-50
gb|ESW10803.1| hypothetical protein PHAVU_009G239200g [Phaseolus... 203 9e-50
ref|XP_002329666.1| predicted protein [Populus trichocarpa] gi|5... 203 9e-50
ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containi... 202 1e-49
ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containi... 198 3e-48
ref|NP_179484.1| pentatricopeptide repeat-containing protein [Ar... 196 1e-47
ref|XP_006409097.1| hypothetical protein EUTSA_v10022551mg [Eutr... 195 2e-47
ref|XP_002884184.1| pentatricopeptide repeat-containing protein ... 195 2e-47
ref|XP_004242906.1| PREDICTED: pentatricopeptide repeat-containi... 194 3e-47
ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containi... 194 4e-47
emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera] 194 4e-47
ref|XP_006344540.1| PREDICTED: pentatricopeptide repeat-containi... 193 7e-47
ref|XP_006296987.1| hypothetical protein CARUB_v10012981mg [Caps... 191 3e-46
ref|XP_003594946.1| Pentatricopeptide repeat-containing protein ... 191 3e-46
ref|XP_004487947.1| PREDICTED: pentatricopeptide repeat-containi... 189 1e-45
>ref|XP_004296451.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Fragaria vesca subsp. vesca]
Length = 846
Score = 225 bits (574), Expect = 2e-56
Identities = 123/303 (40%), Positives = 177/303 (58%), Gaps = 11/303 (3%)
Frame = +1
Query: 64 MEGAPFPIRPALPNQ-------SPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEAR 222
MEG FP RP LP Q SP + +++
Sbjct: 1 MEGTLFPSRPVLPIQTNRPIQPSPPVKFNATTLPPLPQNPSSFPIDSLLHHLLNISSPPN 60
Query: 223 T--TFRP--PPTSKNPSFPSLRLASTSSPREKSSPAPHARLAGVKDGAWVLRDPRLGFLS 390
T +P PP N +FPSL +++ S+P++ P + L + D + FL+
Sbjct: 61 TPHNLKPLNPPHQTNDTFPSLHISADSTPKQHQFKKPTSVLVPSFEDKARTEDGLIDFLT 120
Query: 391 AAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXX 570
G+ + SI++ PL V L ++ K E+ D I LLKAL + GNWE+AL +F
Sbjct: 121 IKGKMMFNSIVESPLDCVNELCDSAKFELLEVDLISLLKALDLSGNWERALLVFEWILLN 180
Query: 571 XXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGK 750
+LD IE+M+R+LG+ SQH++A+KLFD IP+EE+ LD+RAYTT++H+YSR GK
Sbjct: 181 LNAESLKLDKQIIELMVRILGRQSQHTIASKLFDVIPIEEYSLDVRAYTTVIHAYSRTGK 240
Query: 751 YDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYS 930
Y++AI +F ++ G+ PTLVTYNV+LDVYG+KGRSW+KIL +LDEMKS+ + +D+FT S
Sbjct: 241 YERAIDMFEKLMEMGLSPTLVTYNVMLDVYGKKGRSWNKILGLLDEMKSKGLEFDDFTCS 300
Query: 931 TVI 939
TVI
Sbjct: 301 TVI 303
Score = 63.9 bits (154), Expect = 8e-08
Identities = 29/76 (38%), Positives = 54/76 (71%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++++Y RAGK ++A+ LFNQ+K G +P + TYN +L + G+K R +++++L +M
Sbjct: 404 YTTVINAYGRAGKEEEALRLFNQMKETGCVPNVCTYNAVLAMLGKKLRP-EEMIKVLCDM 462
Query: 892 KSRRVSYDEFTYSTVI 939
KS + + T++T++
Sbjct: 463 KSSGCAPNRITWNTML 478
Score = 61.6 bits (148), Expect = 4e-07
Identities = 31/93 (33%), Positives = 53/93 (56%)
Frame = +1
Query: 661 KLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVY 840
+ F + + ++ D+ + ++L Y+R YD+A + + I+ G+ P LVTYN ++D+Y
Sbjct: 632 RAFQQLQINGYKPDLVLFNSMLSIYARKNMYDRANDMLHMIRENGLQPDLVTYNSLMDMY 691
Query: 841 GRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
RKG W K EIL ++ D +Y+TVI
Sbjct: 692 ARKGECW-KAEEILLSLQKSGGKPDLVSYNTVI 723
>gb|EMJ16134.1| hypothetical protein PRUPE_ppa001374mg [Prunus persica]
Length = 842
Score = 213 bits (543), Expect = 6e-53
Identities = 121/308 (39%), Positives = 179/308 (58%), Gaps = 16/308 (5%)
Frame = +1
Query: 64 MEGAPFPIRPALPNQS-----PKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTT 228
MEG FP RPA P + P ++ QHL +
Sbjct: 1 MEGTFFPSRPAYPLPTNRPIQPSPPVKFNSTTLPPPPQTPSPPFPIDSLLQHLLSLSSPP 60
Query: 229 FRPP-------PTSKNPSFPSLRLASTSSPRE--KSSPAPHARLAGVKDGAWVLR--DPR 375
PP P N +FPSL+++ S+P++ + A + +D ++ D
Sbjct: 61 NTPPKLKPLNPPQQTNGNFPSLQISVDSTPKQHHQLKKAASILVPNFEDDKVEVKPEDGL 120
Query: 376 LGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFX 555
L FL+ G+ + SI++ PL + ++ K E+F D I LLKAL + GNWE+AL LF
Sbjct: 121 LDFLTIKGKLMFSSIVEQPLHSLNDFFDSAKFELFEVDLISLLKALDLSGNWERALLLFE 180
Query: 556 XXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSY 735
+L+ P IE+M+R+LG+ SQH++A+KLFD IP+E++ LD+RAYTT++H++
Sbjct: 181 WILSNLSSENLKLNNPMIELMVRILGRESQHTIASKLFDVIPIEKYSLDVRAYTTIIHAH 240
Query: 736 SRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYD 915
SR GKY++AI LFN++ G+ PTLVTYNV+LDVYG+ GRSW+KIL +L++M+S+ +D
Sbjct: 241 SRTGKYERAIDLFNKMVELGLSPTLVTYNVMLDVYGKMGRSWNKILGLLEDMRSKGFEFD 300
Query: 916 EFTYSTVI 939
EFT STVI
Sbjct: 301 EFTCSTVI 308
Score = 58.9 bits (141), Expect = 3e-06
Identities = 26/76 (34%), Positives = 52/76 (68%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++++Y +AGK ++A+ LFN +K+ G +P + TYN +L + G+K +++ +L EM
Sbjct: 409 YTTVINAYGKAGKEEEALRLFNHMKATGCVPNVCTYNAVLGMLGKKSLP-EEMIMLLCEM 467
Query: 892 KSRRVSYDEFTYSTVI 939
K+ + + T++T++
Sbjct: 468 KASGCAPNRITWNTML 483
Score = 58.5 bits (140), Expect = 3e-06
Identities = 31/93 (33%), Positives = 51/93 (54%)
Frame = +1
Query: 661 KLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVY 840
+ F + ++ D+ Y ++L ++R YD+A + I+ G+ P LVTYN ++D+Y
Sbjct: 637 RAFQKLQSNGYKPDLVLYNSMLSIFARNNMYDRANDMLYMIRENGLQPDLVTYNSLMDMY 696
Query: 841 GRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
RKG W K EIL ++ D +Y+TVI
Sbjct: 697 ARKGECW-KAEEILMALQKSGGKPDLVSYNTVI 728
>gb|EOY31850.1| Tetratricopeptide repeat (TPR)-like superfamily protein [Theobroma
cacao]
Length = 845
Score = 211 bits (537), Expect = 3e-52
Identities = 115/257 (44%), Positives = 162/257 (63%), Gaps = 11/257 (4%)
Frame = +1
Query: 202 HLAKEARTTFRP----PPTSKNPSFPSLRLASTSSPR-------EKSSPAPHARLAGVKD 348
HL+ T +P PP + N +PSL ++S S+ + +K + A + K+
Sbjct: 56 HLSSPPNTIHKPKTINPPKTNNSHYPSLHISSDSTQKLQQQVHPKKPTSASLLQFDNSKE 115
Query: 349 GAWVLRDPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGN 528
+ RD L FLS G +L SI + PL + + K E+ D LLKAL + G+
Sbjct: 116 ESQS-RDGSLEFLSRKGMLMLNSIKEQPLNSLNDFFNSVKFELLQFDMFSLLKALDLSGD 174
Query: 529 WEKALTLFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIR 708
WE+AL LF +LD +E+M+RVLG+ SQH +A KLFD IP+EE LD+R
Sbjct: 175 WERALLLFQWVVSDIGSDNFKLDNQVVELMVRVLGRESQHGIALKLFDLIPIEECSLDVR 234
Query: 709 AYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDE 888
A+TT+LH+YSR GKY +AI++F ++K+ G+ PTLVTYNV+LDVYG+ GRSW+KIL+ILDE
Sbjct: 235 AHTTILHAYSRTGKYKRAISMFEKMKATGLSPTLVTYNVMLDVYGKMGRSWNKILQILDE 294
Query: 889 MKSRRVSYDEFTYSTVI 939
M+S+ + +DEFT STVI
Sbjct: 295 MRSKGLEFDEFTCSTVI 311
Score = 64.3 bits (155), Expect = 6e-08
Identities = 29/76 (38%), Positives = 54/76 (71%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++++Y +AGK D+A+ LF+++K G +P + TYN +L + G+K RS ++++IL +M
Sbjct: 412 YTTVINAYGKAGKEDEALKLFHRMKESGCVPNVCTYNAVLGMLGKKSRS-EEMIKILCDM 470
Query: 892 KSRRVSYDEFTYSTVI 939
K S + T++T++
Sbjct: 471 KVSGCSPNRITWNTML 486
>ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223526356|gb|EEF28650.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 835
Score = 209 bits (532), Expect = 1e-51
Identities = 112/241 (46%), Positives = 158/241 (65%), Gaps = 7/241 (2%)
Frame = +1
Query: 238 PPTSKNPSFPSLRLASTSSPREKSSPAPHARLAGV-------KDGAWVLRDPRLGFLSAA 396
PP+ N PSL+++ + +++ PAPH + ++ V L +LS
Sbjct: 63 PPS--NTRLPSLQISGDLT-KKQLQPAPHRKPNSFLEFEVDKEEDKDVSDSGFLEYLSRK 119
Query: 397 GQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXX 576
G+ +L SII+ PL + S ++ K E+ D I LLKAL GNWEKAL LF
Sbjct: 120 GKLILGSIIEQPLHSLASFFDSSKYELLQVDLISLLKALDYSGNWEKALLLFEWSVLNLG 179
Query: 577 XXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYD 756
++D AIE+M+R+LG+ SQH+VA+KLFD IPL+++ LD+RAYTT+LH+YSR GKY
Sbjct: 180 IANEKIDRHAIELMVRILGRESQHTVASKLFDVIPLDDYVLDVRAYTTILHAYSRTGKYH 239
Query: 757 KAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTV 936
+AI +F ++ G+ P+LVTYNV+LDVYG+ GRSW KILE+LDEM+SR + +DEFT STV
Sbjct: 240 RAIEIFERMNESGLSPSLVTYNVMLDVYGKMGRSWDKILELLDEMRSRGLDFDEFTCSTV 299
Query: 937 I 939
+
Sbjct: 300 L 300
Score = 63.2 bits (152), Expect = 1e-07
Identities = 32/115 (27%), Positives = 62/115 (53%)
Frame = +1
Query: 595 DAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALF 774
DA ++ ++ H A + D + + + YTT++++Y R G DKA+ +F
Sbjct: 362 DAVTYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMF 421
Query: 775 NQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
+Q+ G +P + TYN +L + G+K S ++++IL MK S + T++T++
Sbjct: 422 DQMMELGCVPNVATYNAVLGMLGKKSLS-EEMMKILGHMKLNGCSPNHITWNTML 475
>ref|XP_006453335.1| hypothetical protein CICLE_v10007460mg [Citrus clementina]
gi|567922660|ref|XP_006453336.1| hypothetical protein
CICLE_v10007460mg [Citrus clementina]
gi|568840495|ref|XP_006474202.1| PREDICTED:
pentatricopeptide repeat-containing protein At2g18940,
chloroplastic-like [Citrus sinensis]
gi|557556561|gb|ESR66575.1| hypothetical protein
CICLE_v10007460mg [Citrus clementina]
gi|557556562|gb|ESR66576.1| hypothetical protein
CICLE_v10007460mg [Citrus clementina]
Length = 824
Score = 204 bits (518), Expect = 5e-50
Identities = 105/232 (45%), Positives = 151/232 (65%)
Frame = +1
Query: 244 TSKNPSFPSLRLASTSSPREKSSPAPHARLAGVKDGAWVLRDPRLGFLSAAGQSLLRSII 423
+S + S P A++++ + +S P + G D V D FLS G+ + SI+
Sbjct: 59 SSSSSSSPLHIAAASTAAKRANSEKPTSVFDGKDDKGSVSNDGSFEFLSKRGELIFNSIV 118
Query: 424 QCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXXXRLDAP 603
PL + + + E+ G D + +LKAL V G E+AL LF +LD
Sbjct: 119 GYPLNSLNEFFDNSQHELLGIDLVTVLKALDVSGYRERALLLFEWLAVNSSFENGKLDKE 178
Query: 604 AIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQI 783
I++M+R+LGK S+HS+A+KL D IPLE++ LD+RAYT++LH+YS+AGKY+KAI+LF ++
Sbjct: 179 VIQLMVRILGKESRHSIASKLLDLIPLEKYSLDVRAYTSILHAYSKAGKYEKAISLFEKV 238
Query: 784 KSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
K G+ PTLVTYNV+LDVYG+ GRSW +IL +LDEM+SR + +DEFT STVI
Sbjct: 239 KEMGLSPTLVTYNVMLDVYGKMGRSWDRILGLLDEMRSRGLEFDEFTCSTVI 290
Score = 72.4 bits (176), Expect = 2e-10
Identities = 37/94 (39%), Positives = 60/94 (63%)
Frame = +1
Query: 658 AKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDV 837
A L D + + + YTTL+ +Y RAGK +KA+ LFN++K G P + TYN +L +
Sbjct: 373 AALIDTMSSKGLMPNAVTYTTLIDAYGRAGKVNKALRLFNKMKESGCAPNVCTYNAVLGM 432
Query: 838 YGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
G+KGRS ++++IL +MKS S + T++T++
Sbjct: 433 LGKKGRS-EEMMKILCDMKSSGCSPNRITWNTML 465
Score = 62.4 bits (150), Expect = 2e-07
Identities = 33/108 (30%), Positives = 60/108 (55%)
Frame = +1
Query: 616 MIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKG 795
+++V GK+ +S A + + D Y ++ +Y RAG Y++ AL + + SKG
Sbjct: 324 LLQVFGKAGVYSEALSILKEMEDNNCPPDSVTYNEVVGAYVRAGFYEEGAALIDTMSSKG 383
Query: 796 ILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
++P VTY ++D YGR G+ +K L + ++MK + + TY+ V+
Sbjct: 384 LMPNAVTYTTLIDAYGRAGKV-NKALRLFNKMKESGCAPNVCTYNAVL 430
>gb|EXC05166.1| hypothetical protein L484_003973 [Morus notabilis]
Length = 807
Score = 203 bits (516), Expect = 9e-50
Identities = 107/240 (44%), Positives = 153/240 (63%), Gaps = 1/240 (0%)
Frame = +1
Query: 223 TTFRPPPTSKNPSFPSLRLASTSSPREK-SSPAPHARLAGVKDGAWVLRDPRLGFLSAAG 399
T PPP+S P L S++ P+ SS + + + D L FL+ G
Sbjct: 34 TPLPPPPSSSFPIDSLLHHLSSNLPKPHYSSLQISLKPTSIFVPHFQSDDGLLEFLTTKG 93
Query: 400 QSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXX 579
+ + SII L D+ ++ ++++ D I LLKAL + GNWEK+L LF
Sbjct: 94 KMIFNSIIDLSLHDLNGFFDSVRNDLVEIDLISLLKALDLSGNWEKSLLLFEWVLVNLCP 153
Query: 580 XXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDK 759
+L++ IE+M+R+LG+ SQH++A KLFD IP+EEF LD+RAYTT++H+YSR GKY +
Sbjct: 154 DYVKLNSQVIELMVRILGRESQHTIACKLFDEIPVEEFSLDVRAYTTIIHAYSRTGKYGR 213
Query: 760 AIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
AIA+F ++K G+ PTLVTYNV+LDVYG+ GRSW KI+E+LDE++ + +DEFT STVI
Sbjct: 214 AIAIFERMKESGLSPTLVTYNVMLDVYGKMGRSWGKIVELLDEIRGMGLEFDEFTCSTVI 273
Score = 68.2 bits (165), Expect = 4e-09
Identities = 35/115 (30%), Positives = 67/115 (58%)
Frame = +1
Query: 595 DAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALF 774
D+ ++ ++ + A + D + + + + YTT++++Y +AGK DKA+ LF
Sbjct: 335 DSVTYNELVAAYVRAGFYEEGAAVIDTMAQKGVKPNAVTYTTVINAYGKAGKEDKALRLF 394
Query: 775 NQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
NQ+K G +P + TYN IL + G+K RS ++++IL +MKS + T++ ++
Sbjct: 395 NQMKETGCVPNVCTYNAILGMLGKKLRS-EEMIQILCDMKSSGCGPNRITWNAML 448
>gb|ESW10803.1| hypothetical protein PHAVU_009G239200g [Phaseolus vulgaris]
Length = 831
Score = 203 bits (516), Expect = 9e-50
Identities = 124/323 (38%), Positives = 174/323 (53%), Gaps = 31/323 (9%)
Frame = +1
Query: 64 MEGAPFPIRPALPNQSPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTTFRP-- 237
MEG FP RP LP +P + + + F+P
Sbjct: 1 MEGTLFPNRPVLPAPAPA----------------------------PKSTQQPSKFKPTF 32
Query: 238 -PPTSKNPSFPSLRLASTSSPREKSSPAP-----------------------HARLAGVK 345
PP S P PS +L S + S P H++ +
Sbjct: 33 LPPQSPPPPPPSFQLDSLLQHLQHLSSVPITTPTLTLVPLSEDNSIHFNNSLHSKHPSLA 92
Query: 346 DGAWV----LRDPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKAL 513
G V + D + GFLS G+ LL SI+ PL ++ + + E+ D++ LLKAL
Sbjct: 93 SGPVVDQDRVHDAKFGFLSDKGKLLLNSIVGSPLHELNGFFNSVEFELLEVDFLSLLKAL 152
Query: 514 QVLGNWEKALTLFXXXXXXXXXXXX-RLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEE 690
+ GNWE+AL LF RLD +E+MIR+LG+ SQH++A+KLFD IP+E+
Sbjct: 153 DLSGNWERALLLFEWGWLHFGSEQNLRLDNQVVELMIRILGRESQHTIASKLFDLIPVEQ 212
Query: 691 FRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKI 870
+ LD+RAYTT+LH+Y+R GK+ +AI LF ++ G+ PTLVTYNV+LDVYG+ GRSWS+I
Sbjct: 213 YSLDVRAYTTVLHAYARTGKHKRAIELFEKMNEFGLGPTLVTYNVMLDVYGKMGRSWSRI 272
Query: 871 LEILDEMKSRRVSYDEFTYSTVI 939
LE+LDEM+S+ + +DEFT STVI
Sbjct: 273 LELLDEMRSKGLEFDEFTCSTVI 295
Score = 60.8 bits (146), Expect = 7e-07
Identities = 31/108 (28%), Positives = 58/108 (53%)
Frame = +1
Query: 616 MIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKG 795
M++V GK+ ++ A + + D Y L +Y RAG D+ A+ + + SKG
Sbjct: 329 MLQVFGKAGVYTEALSILKEMEDNNCPADSVTYNELAATYVRAGFLDQGKAVIDTMTSKG 388
Query: 796 ILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
++P +TY ++D YG+ GR + L + +MK + + +TY++V+
Sbjct: 389 VMPNAITYTTVIDAYGKAGRE-DEALRLFSQMKDLGCAPNVYTYNSVL 435
Score = 60.1 bits (144), Expect = 1e-06
Identities = 27/76 (35%), Positives = 51/76 (67%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++ +Y +AG+ D+A+ LF+Q+K G P + TYN +L + G+K R+ ++++L EM
Sbjct: 396 YTTVIDAYGKAGREDEALRLFSQMKDLGCAPNVYTYNSVLAMLGKKSRT-EDVIKVLSEM 454
Query: 892 KSRRVSYDEFTYSTVI 939
K + + T++T++
Sbjct: 455 KLSGCAPNRATWNTML 470
>ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|566176851|ref|XP_006381785.1| pentatricopeptide
repeat-containing family protein [Populus trichocarpa]
gi|550336541|gb|ERP59582.1| pentatricopeptide
repeat-containing family protein [Populus trichocarpa]
Length = 821
Score = 203 bits (516), Expect = 9e-50
Identities = 110/236 (46%), Positives = 153/236 (64%), Gaps = 2/236 (0%)
Frame = +1
Query: 238 PPTSK--NPSFPSLRLASTSSPREKSSPAPHARLAGVKDGAWVLRDPRLGFLSAAGQSLL 411
PP K FPSL++++ SS V+ + + L FLS G+ LL
Sbjct: 60 PPNHKLNKTQFPSLQISNDSSISVLEFE--------VEKEEGLSENESLEFLSKRGKLLL 111
Query: 412 RSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXXXR 591
SI + PL + E+ K E+F D IG+LKAL + G+ E+A+ LF
Sbjct: 112 NSIKEQPLGGLNDFFESCKFELFQVDLIGVLKALDLSGDCERAILLFEWLVLNLGTGNVN 171
Query: 592 LDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIAL 771
LD A+E+M R+LG+ SQHS+A+KLFD IPL+++ LD+RAYTT+LHSYSR GKY++A+A+
Sbjct: 172 LDNQAVELMARILGRESQHSIASKLFDVIPLDDYSLDVRAYTTILHSYSRCGKYERAVAI 231
Query: 772 FNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
F ++ G+ PTLVTYNV+LDVYG+ GRSW+KIL +LDEM+S+ + +DEFT STVI
Sbjct: 232 FEKMNESGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSKGLGFDEFTCSTVI 287
Score = 64.7 bits (156), Expect = 5e-08
Identities = 33/115 (28%), Positives = 66/115 (57%)
Frame = +1
Query: 595 DAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALF 774
DA ++ ++ + A L D + + + YTT++++Y RA + DKA++L+
Sbjct: 349 DAVTYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLY 408
Query: 775 NQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
+Q+K G P + TYN IL + G+K +S ++++IL +MK + + T++T++
Sbjct: 409 DQMKESGCAPNVCTYNAILGMLGKKSQS-EEMMKILCDMKVDGCAPNRITWNTML 462
Score = 58.9 bits (141), Expect = 3e-06
Identities = 30/93 (32%), Positives = 53/93 (56%)
Frame = +1
Query: 661 KLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVY 840
+ F + ++ D+ + ++L +SR +D+A + + I+ G+ P LVTYN ++D+Y
Sbjct: 616 RAFQALQKHGYKPDLVVFNSMLSMFSRKNMHDRAHEIMHLIQECGLQPDLVTYNSLMDLY 675
Query: 841 GRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
R G W K EIL E+++ D +Y+TVI
Sbjct: 676 ARGGECW-KAEEILRELQNSGDKSDLISYNTVI 707
>ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940,
chloroplastic-like [Glycine max]
Length = 829
Score = 202 bits (514), Expect = 1e-49
Identities = 122/298 (40%), Positives = 167/298 (56%), Gaps = 6/298 (2%)
Frame = +1
Query: 64 MEGAPFPIRPALPNQSPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTTFRPPP 243
MEG FP RP LP S K Q L + + P
Sbjct: 1 MEGTLFPNRPVLPAPSHKPTQQPLKFKPTFLPPQSPPPPPPSFQLDSLLQHLQHLSSVPI 60
Query: 244 TSKNPSFPSLRLASTSSPREKS-SPAPHARLAGVKDGAWV----LRDPRLGFLSAAGQSL 408
T+ +L L S K + + H++ + G+ + D + GFLS G+ L
Sbjct: 61 TTH-----TLTLVPPSHDNTKDFNNSVHSKHPTLGSGSIIDEDKFDDAKFGFLSDKGKLL 115
Query: 409 LRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXXX 588
SI+ PL ++ + K E+ D+ LLKAL + GNWE+AL LF
Sbjct: 116 FSSIVGSPLHELNDFFNSVKFELLEADFPSLLKALDLSGNWERALLLFEWGWLHFGSDQN 175
Query: 589 -RLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAI 765
RLD +E+M+R+LG+ SQHS+A+KLFD IP+E++ LD+RAYTT+LHSY+R GKY +AI
Sbjct: 176 LRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTILHSYARTGKYKRAI 235
Query: 766 ALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
LF ++K G+ PTLVTYNV+LDVYG+ GRSW +ILE+LDEM+S+ + DEFT STVI
Sbjct: 236 DLFGKMKEIGLDPTLVTYNVMLDVYGKMGRSWDRILELLDEMRSKGLELDEFTCSTVI 293
Score = 58.5 bits (140), Expect = 3e-06
Identities = 31/108 (28%), Positives = 57/108 (52%)
Frame = +1
Query: 616 MIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKG 795
M++V GK+ ++ A + + D Y L +Y RAG D+ +A+ + + SKG
Sbjct: 327 MLQVFGKAGIYTEALSILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKG 386
Query: 796 ILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
++P +TY ++D YG+ GR L + MK + + +TY++V+
Sbjct: 387 VMPNAITYTTVIDAYGKAGRE-DDALRLFSLMKDLGCAPNVYTYNSVL 433
>ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940,
chloroplastic-like [Glycine max]
Length = 830
Score = 198 bits (503), Expect = 3e-48
Identities = 98/192 (51%), Positives = 138/192 (71%), Gaps = 1/192 (0%)
Frame = +1
Query: 367 DPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALT 546
D + FLS G+ LL S++ PL ++ + K E+ D+ LLKAL + GNWE+AL
Sbjct: 103 DAKFRFLSDKGKLLLNSVVGSPLHELNDFFNSVKFELLEADFPSLLKALDLSGNWERALL 162
Query: 547 LFXXXXXXXXXXXX-RLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTL 723
LF RLD +E+M+R+LG+ SQHS+A+KLFD IP+E++ LD+RAYTT+
Sbjct: 163 LFEWGWLHFGSDQNLRLDNQVVELMVRILGRESQHSIASKLFDLIPVEKYSLDVRAYTTI 222
Query: 724 LHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRR 903
LH+Y+R+GKY +AI LF++++ G+ PTLVTYNV+LDVYG+ GRSW +ILE+LDEM+S+
Sbjct: 223 LHAYARSGKYKRAIDLFDKMEGIGLDPTLVTYNVMLDVYGKMGRSWGRILELLDEMRSKG 282
Query: 904 VSYDEFTYSTVI 939
+ +DEFT STVI
Sbjct: 283 LEFDEFTCSTVI 294
Score = 60.1 bits (144), Expect = 1e-06
Identities = 31/108 (28%), Positives = 58/108 (53%)
Frame = +1
Query: 616 MIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKG 795
M++V GK+ ++ A + + D Y L +Y RAG D+ +A+ + + SKG
Sbjct: 328 MLQVFGKAGIYTEALSILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKG 387
Query: 796 ILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
++P +TY ++D YG+ GR L + +MK + + +TY++V+
Sbjct: 388 VMPNAITYTTVIDAYGKAGRE-DDALRLFSKMKDLGCAPNVYTYNSVL 434
>ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName:
Full=Pentatricopeptide repeat-containing protein
At2g18940, chloroplastic; Flags: Precursor
gi|3004555|gb|AAC09028.1| putative salt-inducible
protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14
[Arabidopsis thaliana] gi|38564280|gb|AAR23719.1|
At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide
repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 196 bits (498), Expect = 1e-47
Identities = 107/238 (44%), Positives = 149/238 (62%), Gaps = 3/238 (1%)
Frame = +1
Query: 235 PPPTSKNPS---FPSLRLASTSSPREKSSPAPHARLAGVKDGAWVLRDPRLGFLSAAGQS 405
PPP N + FPSL +++ SS S P + ++G+ L L
Sbjct: 61 PPPRHSNSAAARFPSLEVSTDSS---SSKPILGIEIENERNGS-------LKLLCKKEVV 110
Query: 406 LLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXX 585
L+ SI++ PL + ++ K E+ TD + L+K L G+WE+A+ LF
Sbjct: 111 LVNSIVEQPLTGLSRFFDSVKSELLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGA 170
Query: 586 XRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAI 765
+LD IE+ +R+LG+ SQ+SVAAKL D IPL+E+ LD+RAYTT+LH+YSR GKY+KAI
Sbjct: 171 LKLDHQVIEIFVRILGRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHAYSRTGKYEKAI 230
Query: 766 ALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
LF ++K G PTLVTYNVILDV+G+ GRSW KIL +LDEM+S+ + +DEFT STV+
Sbjct: 231 DLFERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVL 288
Score = 62.4 bits (150), Expect = 2e-07
Identities = 29/76 (38%), Positives = 52/76 (68%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++ +Y +AGK D+A+ LF +K G +P TYN +L + G+K RS ++++++L +M
Sbjct: 389 YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRS-NEMIKMLCDM 447
Query: 892 KSRRVSYDEFTYSTVI 939
KS S + T++T++
Sbjct: 448 KSNGCSPNRATWNTML 463
Score = 58.2 bits (139), Expect = 5e-06
Identities = 28/83 (33%), Positives = 50/83 (60%)
Frame = +1
Query: 691 FRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKI 870
++ D+ + ++L ++R YD+A + I+ G+ P LVTYN ++D+Y R+G W K
Sbjct: 627 YKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSLMDMYVRRGECW-KA 685
Query: 871 LEILDEMKSRRVSYDEFTYSTVI 939
EIL ++ ++ D +Y+TVI
Sbjct: 686 EEILKTLEKSQLKPDLVSYNTVI 708
>ref|XP_006409097.1| hypothetical protein EUTSA_v10022551mg [Eutrema salsugineum]
gi|557110259|gb|ESQ50550.1| hypothetical protein
EUTSA_v10022551mg [Eutrema salsugineum]
Length = 838
Score = 195 bits (496), Expect = 2e-47
Identities = 120/309 (38%), Positives = 167/309 (54%), Gaps = 17/309 (5%)
Frame = +1
Query: 64 MEGAPFPIRPALPNQSPK----------IVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAK 213
M+GA FP +P P QS K + HL+
Sbjct: 1 MDGALFPHKPPYPIQSKKPPPSQSSNHSVKFSSATLHLPPPSPPSFPLDSLLHHLVHLSS 60
Query: 214 EARTTFRPPPTSKNPSFPSLRLASTSSPREKSSPAPHAR-----LAGVKDGA--WVLRDP 372
R S FPSL ++ST S + AR + G++ G+ D
Sbjct: 61 TPRNA-----NSAAARFPSLEVSSTESAHKWGHEVKSARPDSIPVLGIEIGSDEGKFGDG 115
Query: 373 RLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLF 552
L L LL SI++ PL + ++ K E+ TD L+K+L GNWE+A+ LF
Sbjct: 116 SLKLLCKKEVVLLNSIVEQPLHGLSEFFDSAKPELLRTDLFSLVKSLDDSGNWERAVLLF 175
Query: 553 XXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHS 732
+LD IE+++R+LG+ SQ+SVAAKL D IPL++ LD+RAYTT+L++
Sbjct: 176 EWLVLASNSGALKLDHQVIEIVVRILGRESQYSVAAKLLDKIPLQDHLLDVRAYTTILYT 235
Query: 733 YSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSY 912
YSR GKY++AI+LF ++K G PTLVTYNVILDV+G+ GRSWSKIL +LDEM+ +R+ +
Sbjct: 236 YSRTGKYERAISLFERMKEMGPSPTLVTYNVILDVFGKMGRSWSKILLVLDEMRIKRLQF 295
Query: 913 DEFTYSTVI 939
DEFT STV+
Sbjct: 296 DEFTCSTVL 304
Score = 60.1 bits (144), Expect = 1e-06
Identities = 27/76 (35%), Positives = 52/76 (68%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++ +Y ++GK ++A+ LF +K G +P TYN +L + G+K RS ++++++L +M
Sbjct: 405 YTTVIDAYGKSGKEEEALKLFYSMKKAGCVPNTCTYNAVLSMLGKKSRS-NEMIKMLCDM 463
Query: 892 KSRRVSYDEFTYSTVI 939
KS S + T++T++
Sbjct: 464 KSNGCSPNRVTWNTML 479
>ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297330024|gb|EFH60443.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 829
Score = 195 bits (496), Expect = 2e-47
Identities = 106/236 (44%), Positives = 153/236 (64%), Gaps = 2/236 (0%)
Frame = +1
Query: 238 PPTSKNPSFPSLRLASTSSP--REKSSPAPHARLAGVKDGAWVLRDPRLGFLSAAGQSLL 411
PP FPSL ++++S+ R +S+ + + GV+ RD L L L+
Sbjct: 62 PPRHAAARFPSLEVSTSSAHKWRHESTKPMSSSVLGVEIENE--RDGSLKLLCKKEVVLV 119
Query: 412 RSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXXXXXR 591
SI++ PL + S ++ K E+ TD + L+K L G+WE+A+ LF +
Sbjct: 120 NSIVEQPLPRLSSFFDSVKSELLTTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALK 179
Query: 592 LDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIAL 771
LD IE+++R+LG+ SQ+SVAAKL D IPL+++ LD+RAYTT+LH+YSR GKY+KAI L
Sbjct: 180 LDHHVIEILVRILGRESQYSVAAKLLDKIPLQDYMLDVRAYTTILHAYSRTGKYEKAINL 239
Query: 772 FNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
F ++K G PTLVTYNVILDV+G+ GRSW KIL +L+EM+S+ + +DEFT STV+
Sbjct: 240 FERMKEMGPSPTLVTYNVILDVFGKMGRSWRKILGVLEEMRSKGLKFDEFTCSTVL 295
Score = 60.8 bits (146), Expect = 7e-07
Identities = 28/76 (36%), Positives = 51/76 (67%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++ +Y +AGK D+A+ LF +K G +P TYN +L + G+K RS ++++++L +M
Sbjct: 396 YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRS-NEMIKMLCDM 454
Query: 892 KSRRVSYDEFTYSTVI 939
KS + T++T++
Sbjct: 455 KSNGCFPNRATWNTIL 470
>ref|XP_004242906.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Solanum lycopersicum]
Length = 842
Score = 194 bits (494), Expect = 3e-47
Identities = 128/328 (39%), Positives = 171/328 (52%), Gaps = 36/328 (10%)
Frame = +1
Query: 64 MEGAPFPIRPALPNQSPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTTFRP-- 237
MEG+ FP RP LP QS K Q L TT P
Sbjct: 1 MEGSLFPNRPILPIQSTK--------------------PTPLPPTQRLKLNPTTTTSPLP 40
Query: 238 ---------PPTSKNPSFPS-------LRLASTSSPRE-KSSPAPHARLAGV-----KDG 351
P +S + SFP L ++S++ PR KSS + L+ + D
Sbjct: 41 PLKQQQQQTPSSSTSTSFPLDSLLQHLLHVSSSNPPRTVKSSRISNTHLSTLPVSLENDD 100
Query: 352 AWV------------LRDPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWI 495
D L FL + ++ SI++ PL + ++ K E+ D +
Sbjct: 101 TLFGNTRVTVPKMESFDDGSLEFLPLNCKLMIDSILERPLSHMTEFFDSVKLELLEVDLM 160
Query: 496 GLLKALQVLGNWEKALTLFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDC 675
LLK L VLG W++A+ LF +LD+ IE M++VLG+ SQH V +KLFD
Sbjct: 161 SLLKGLDVLGKWDRAILLFEWAVLNIHVENEKLDSQVIEFMVKVLGRESQHLVTSKLFDV 220
Query: 676 IPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGR 855
IP E++ LD+RA+TT+LH+YSR GKYDKAIALF +K KG+ TLVTYNV+LDVYG+KGR
Sbjct: 221 IPFEDYSLDVRAWTTVLHAYSRIGKYDKAIALFEYVKEKGLSVTLVTYNVMLDVYGKKGR 280
Query: 856 SWSKILEILDEMKSRRVSYDEFTYSTVI 939
SW+ IL +LDEM S + +DEFT STVI
Sbjct: 281 SWNNILLLLDEMTSNGLEFDEFTCSTVI 308
Score = 61.2 bits (147), Expect = 5e-07
Identities = 26/76 (34%), Positives = 51/76 (67%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++ +Y +AGK DKA++ F Q+K G +P + TYN I+ + G+K R ++++++ +M
Sbjct: 409 YTTVIDAYGKAGKEDKALSFFKQMKQAGCVPNVCTYNAIIGMLGKKSRV-EEMMDMISDM 467
Query: 892 KSRRVSYDEFTYSTVI 939
K + + T++T++
Sbjct: 468 KLNGCAPNRITWNTML 483
Score = 58.2 bits (139), Expect = 5e-06
Identities = 41/151 (27%), Positives = 70/151 (46%), Gaps = 1/151 (0%)
Frame = +1
Query: 490 WIGLLKALQVLGNWEKALTLFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQH-SVAAKL 666
W +L A +G ++KA+ LF + VM+ V GK + + L
Sbjct: 233 WTTVLHAYSRIGKYDKAIALFEYVKEKGLS----VTLVTYNVMLDVYGKKGRSWNNILLL 288
Query: 667 FDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGR 846
D + D +T++ + R G ++A F+ +K KG +P VTYN +L V+G+
Sbjct: 289 LDEMTSNGLEFDEFTCSTVIAACGREGLLEEAKEFFDVLKRKGYVPGTVTYNSLLQVFGK 348
Query: 847 KGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
G +S+ L +L EM+ D TY+ ++
Sbjct: 349 AG-IYSEALRVLKEMEENNCPPDSVTYNELV 378
>ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera] gi|297735424|emb|CBI17864.3| unnamed
protein product [Vitis vinifera]
Length = 821
Score = 194 bits (493), Expect = 4e-47
Identities = 104/247 (42%), Positives = 151/247 (61%)
Frame = +1
Query: 199 QHLAKEARTTFRPPPTSKNPSFPSLRLASTSSPREKSSPAPHARLAGVKDGAWVLRDPRL 378
QHL + T +P P NP +L+ S S + A+ D +
Sbjct: 53 QHLLHFSSPTHKPKPI--NPPKTNLKKFSAVSVSQLEGSVEEAQSP----------DGSV 100
Query: 379 GFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXX 558
FLS G+ LL SI++ PL + ++ K E+ D + LLK L + GNW++A+ LF
Sbjct: 101 EFLSRKGKFLLNSIVEHPLPGLNDFFDSVKFELLDVDLVSLLKGLDLSGNWKRAVLLFKW 160
Query: 559 XXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYS 738
++D +E+M+R+LG+ SQHSVA +L D I +EE+ LD+RA+TT+LH+YS
Sbjct: 161 AILNLYSRNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYS 220
Query: 739 RAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDE 918
R GKY++AI +F +++ G+ PTLVTYNV+LDVYG+ GRSW+KIL +LDEM+S + +DE
Sbjct: 221 RIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDE 280
Query: 919 FTYSTVI 939
FT STVI
Sbjct: 281 FTCSTVI 287
Score = 64.3 bits (155), Expect = 6e-08
Identities = 31/98 (31%), Positives = 59/98 (60%)
Frame = +1
Query: 646 HSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNV 825
H A D + + + YTT++++Y +AGK DKA++ F Q+K G +P + TYN
Sbjct: 366 HEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNA 425
Query: 826 ILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
IL + G+K R +++++L +M+S + + T++T++
Sbjct: 426 ILGMLGKKSR-LEEMIDMLCDMRSNGCAPNSVTWNTML 462
>emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 194 bits (493), Expect = 4e-47
Identities = 104/247 (42%), Positives = 151/247 (61%)
Frame = +1
Query: 199 QHLAKEARTTFRPPPTSKNPSFPSLRLASTSSPREKSSPAPHARLAGVKDGAWVLRDPRL 378
QHL + T +P P NP +L+ S S + A+ D +
Sbjct: 53 QHLLHFSSPTHKPKPI--NPPKTNLKKFSAVSVSQLEGSVEEAQSP----------DGSV 100
Query: 379 GFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXX 558
FLS G+ LL SI++ PL + ++ K E+ D + LLK L + GNW++A+ LF
Sbjct: 101 EFLSRKGKFLLNSIVEHPLPGLNDFFDSVKFELLDVDLVSLLKGLDLSGNWKRAVLLFKW 160
Query: 559 XXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYS 738
++D +E+M+R+LG+ SQHSVA +L D I +EE+ LD+RA+TT+LH+YS
Sbjct: 161 AILNLYSRNEKIDNQLVELMVRILGRESQHSVALRLLDEISVEEYSLDVRAWTTILHAYS 220
Query: 739 RAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDE 918
R GKY++AI +F +++ G+ PTLVTYNV+LDVYG+ GRSW+KIL +LDEM+S + +DE
Sbjct: 221 RIGKYERAITMFEKMRKTGLSPTLVTYNVMLDVYGKMGRSWNKILGLLDEMRSNGLEFDE 280
Query: 919 FTYSTVI 939
FT STVI
Sbjct: 281 FTCSTVI 287
Score = 64.3 bits (155), Expect = 6e-08
Identities = 31/98 (31%), Positives = 59/98 (60%)
Frame = +1
Query: 646 HSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNV 825
H A D + + + YTT++++Y +AGK DKA++ F Q+K G +P + TYN
Sbjct: 366 HEEGADFIDTMIRKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGCVPNVCTYNA 425
Query: 826 ILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
IL + G+K R +++++L +M+S + + T++T++
Sbjct: 426 ILGMLGKKSR-LEEMIDMLCDMRSNGCAPNSVTWNTML 462
>ref|XP_006344540.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940,
chloroplastic-like [Solanum tuberosum]
Length = 842
Score = 193 bits (491), Expect = 7e-47
Identities = 127/328 (38%), Positives = 170/328 (51%), Gaps = 36/328 (10%)
Frame = +1
Query: 64 MEGAPFPIRPALPNQSPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHLAKEARTTFRP-- 237
MEG+ FP RP LP QS K Q L TT P
Sbjct: 1 MEGSLFPNRPILPIQSTK--------------------PTPLPPTQRLKLNPTTTSSPLP 40
Query: 238 ---------PPTSKNPSFPS-------LRLASTSSPRE-KSSPAPHARLAGV-----KDG 351
P +S + SFP L ++S++ PR KSS + L+ + D
Sbjct: 41 PLKQQQQQTPSSSTSTSFPLDSLLQHLLHVSSSNPPRTVKSSRISNTHLSSLPVSLENDD 100
Query: 352 AWV------------LRDPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWI 495
D L FL + L+ SI++ PL + ++ K E+ D +
Sbjct: 101 TLFGNTRVTVPKMESFDDGSLEFLPLNCKLLIDSILERPLSHLTEFFDSVKFELLEVDLM 160
Query: 496 GLLKALQVLGNWEKALTLFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDC 675
LLK L V+G W++A+ LF +LD+ IE M++VLG+ SQH V +KLFD
Sbjct: 161 SLLKGLDVIGKWDRAILLFEWVVLNIHVENEKLDSQVIEFMVKVLGRESQHLVTSKLFDV 220
Query: 676 IPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGR 855
IP E++ LD+RA+TT+LH+YSR GKYDKAIALF +K KG+ TLVTYNV+LDVYG+KGR
Sbjct: 221 IPFEDYSLDVRAWTTVLHAYSRIGKYDKAIALFEYVKEKGLSATLVTYNVMLDVYGKKGR 280
Query: 856 SWSKILEILDEMKSRRVSYDEFTYSTVI 939
SW+ IL +LD M S + +DEFT STVI
Sbjct: 281 SWNNILLLLDVMTSNGLEFDEFTCSTVI 308
Score = 62.0 bits (149), Expect = 3e-07
Identities = 26/76 (34%), Positives = 51/76 (67%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++ +Y +AGK DKA++ F Q+K G +P + TYN I+ + G+K R ++++++ +M
Sbjct: 409 YTTVIDAYGKAGKEDKALSFFKQMKQAGCVPNVCTYNAIIGMLGKKSRV-EEMMDVISDM 467
Query: 892 KSRRVSYDEFTYSTVI 939
K + + T++T++
Sbjct: 468 KLNGCAPNRITWNTML 483
Score = 59.3 bits (142), Expect = 2e-06
Identities = 43/153 (28%), Positives = 72/153 (47%), Gaps = 3/153 (1%)
Frame = +1
Query: 490 WIGLLKALQVLGNWEKALTLFXXXXXXXXXXXXRLDAPAI--EVMIRVLGKSSQH-SVAA 660
W +L A +G ++KA+ LF L A + VM+ V GK + +
Sbjct: 233 WTTVLHAYSRIGKYDKAIALFEYVKEKG------LSATLVTYNVMLDVYGKKGRSWNNIL 286
Query: 661 KLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVY 840
L D + D +T++ + R G ++A F+ +K KG +P VTYN +L V+
Sbjct: 287 LLLDVMTSNGLEFDEFTCSTVIAACGREGLLEEAKEFFDGLKRKGYVPGTVTYNSLLQVF 346
Query: 841 GRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
G+ G +S+ L +L EM+ D TY+ ++
Sbjct: 347 GKAG-IYSEALRVLKEMEENNCPPDSVTYNELV 378
>ref|XP_006296987.1| hypothetical protein CARUB_v10012981mg [Capsella rubella]
gi|482565696|gb|EOA29885.1| hypothetical protein
CARUB_v10012981mg [Capsella rubella]
Length = 832
Score = 191 bits (485), Expect = 3e-46
Identities = 107/240 (44%), Positives = 145/240 (60%), Gaps = 6/240 (2%)
Frame = +1
Query: 238 PPTSKNPSFPSLRLASTSSP------REKSSPAPHARLAGVKDGAWVLRDPRLGFLSAAG 399
PP FPSL +++ SS E S P + L G R L L
Sbjct: 62 PPRHAAARFPSLEVSTDSSSSTHKWRHESSKPMSSSVLGGEIGNE---RGGSLKLLCKKE 118
Query: 400 QSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXXXXXXXXX 579
L+ SI++ PL + ++ K E+ TD + L+K L G+WE+A LF
Sbjct: 119 VVLVNSIVEQPLPGLNRFFDSVKSELLRTDLVSLVKGLDDSGHWERAAFLFEWLVSPSNS 178
Query: 580 XXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDK 759
+LD IE+++R+L + SQ+SVAAKL D IPL+E+ LD+RAYTT+LH+YSR GKY+K
Sbjct: 179 GTLKLDHQVIEILVRILSRESQYSVAAKLLDKIPLQEYLLDVRAYTTILHTYSRTGKYEK 238
Query: 760 AIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
AI LF ++K G PTLVTYNVILDV+G+ GRSW KIL +LDEM+S+ + +DEFT STV+
Sbjct: 239 AINLFERMKEFGPSPTLVTYNVILDVFGKMGRSWRKILVVLDEMRSKGLKFDEFTCSTVL 298
Score = 62.4 bits (150), Expect = 2e-07
Identities = 29/76 (38%), Positives = 52/76 (68%)
Frame = +1
Query: 712 YTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEM 891
YTT++ +Y +AGK D+A+ LF +K G +P TYN +L + G+K RS ++++++L +M
Sbjct: 399 YTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRS-NEMIKMLCDM 457
Query: 892 KSRRVSYDEFTYSTVI 939
KS S + T++T++
Sbjct: 458 KSNGCSPNRATWNTML 473
Score = 58.9 bits (141), Expect = 3e-06
Identities = 29/83 (34%), Positives = 51/83 (61%)
Frame = +1
Query: 691 FRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKI 870
++ D+ + ++L ++R YD+A A+ I+ G+ P LVTYN ++D+Y R+G W K
Sbjct: 637 YKPDMVIFNSMLSIFTRNNMYDQAEAILQSIRKDGMNPDLVTYNSLMDMYVRRGECW-KA 695
Query: 871 LEILDEMKSRRVSYDEFTYSTVI 939
EIL ++ ++ D +Y+TVI
Sbjct: 696 EEILKTLEKSQLKPDLVSYNTVI 718
>ref|XP_003594946.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359380|gb|ABN05846.1| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355483994|gb|AES65197.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 849
Score = 191 bits (485), Expect = 3e-46
Identities = 91/191 (47%), Positives = 133/191 (69%)
Frame = +1
Query: 367 DPRLGFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALT 546
D + GFLS + +L I+ L D+I + K E+ +D GLLK L + GNWE+A
Sbjct: 125 DVKFGFLSGKSKFMLNCIVGSSLNDLIEFFNSVKGELLESDITGLLKGLDLSGNWERAFL 184
Query: 547 LFXXXXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLL 726
LF ++D ++E M+++LG+ SQ+S+A+KLFD IP+EE+ LD++A TT+L
Sbjct: 185 LFEWVWLNFGSENMKVDDQSVEFMVKMLGRESQYSIASKLFDIIPVEEYSLDVKACTTVL 244
Query: 727 HSYSRAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRV 906
H+Y+R GKY +AI +F ++K G+ PTLVTYNV+LDVYG+ GR+WS ILE+LDEM+S+ +
Sbjct: 245 HAYARTGKYKRAIEIFEKMKETGLDPTLVTYNVMLDVYGKMGRAWSMILELLDEMRSKGL 304
Query: 907 SYDEFTYSTVI 939
+DEFT +TVI
Sbjct: 305 EFDEFTCTTVI 315
Score = 62.4 bits (150), Expect = 2e-07
Identities = 33/115 (28%), Positives = 63/115 (54%)
Frame = +1
Query: 595 DAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALF 774
DA ++ ++ H A + D + + + YTT++++Y +AG DKA+ +F
Sbjct: 377 DAITYNELVAAYVRAGFHDEGAAVIDTMASKGVMPNAITYTTVINAYGKAGDADKALEVF 436
Query: 775 NQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
Q+K G +P + TYN +L + G++ RS +++IL +MK D T++T++
Sbjct: 437 GQMKELGCVPNVCTYNNVLVLLGKRSRS-EDMIKILCDMKLNGCPPDRITWNTML 490
Score = 59.7 bits (143), Expect = 2e-06
Identities = 31/108 (28%), Positives = 58/108 (53%)
Frame = +1
Query: 616 MIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYSRAGKYDKAIALFNQIKSKG 795
M++V GK+ ++ A + + D Y L+ +Y RAG +D+ A+ + + SKG
Sbjct: 349 MLQVFGKAGVYTEALNILKEMEDNNCEPDAITYNELVAAYVRAGFHDEGAAVIDTMASKG 408
Query: 796 ILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDEFTYSTVI 939
++P +TY +++ YG+ G + K LE+ +MK + TY+ V+
Sbjct: 409 VMPNAITYTTVINAYGKAGDA-DKALEVFGQMKELGCVPNVCTYNNVL 455
>ref|XP_004487947.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Cicer arietinum]
Length = 840
Score = 189 bits (480), Expect = 1e-45
Identities = 112/307 (36%), Positives = 168/307 (54%), Gaps = 15/307 (4%)
Frame = +1
Query: 64 MEGAPFPIRPALP---NQSPKIVIQXXXXXXXXXXXXXXXXXXXXXXXQHL------AKE 216
MEG FP RP LP +SP+ ++ HL K
Sbjct: 1 MEGTLFPNRPLLPLPTKKSPQQPLKFKPTFSHSPPPPQQSPPSQTPVSYHLDSLLHHLKH 60
Query: 217 ARTTFRPPPTSKNPS------FPSLRLASTSSPREKSSPAPHARLAGVKDGAWVLRDPRL 378
+ + P ++N + F SL++ ++ + + D W D +
Sbjct: 61 LSSAQKLVPLNQNNNNNNNTHFSSLQIPLDNTHKTLQHSHTKRPNSASVDCNW-FEDAKF 119
Query: 379 GFLSAAGQSLLRSIIQCPLVDVISLLEARKDEIFGTDWIGLLKALQVLGNWEKALTLFXX 558
GFLS + +L SI+ L D+I + K E+ +D LLK L + GNWE+A LF
Sbjct: 120 GFLSDKSKCMLNSIVGFSLNDLIEFFNSVKYELLESDITSLLKGLDLSGNWERAFLLFEW 179
Query: 559 XXXXXXXXXXRLDAPAIEVMIRVLGKSSQHSVAAKLFDCIPLEEFRLDIRAYTTLLHSYS 738
R+D ++E+M+++LG+ SQ+S+A+KLFD IP+EE+ LD+RA TT+LH+Y+
Sbjct: 180 VWLNFGSENMRVDDQSVELMVKILGRESQYSIASKLFDIIPVEEYSLDVRACTTVLHAYA 239
Query: 739 RAGKYDKAIALFNQIKSKGILPTLVTYNVILDVYGRKGRSWSKILEILDEMKSRRVSYDE 918
R GKY +AI +F ++K G+ P LVTYNV+LDVYG+ GRSW+KIL +L+EM+ + + +DE
Sbjct: 240 RTGKYKRAIYIFEKMKETGLNPNLVTYNVMLDVYGKMGRSWNKILGLLNEMRCKGLEFDE 299
Query: 919 FTYSTVI 939
FT STVI
Sbjct: 300 FTCSTVI 306