BLASTX nr result
ID: Zingiber25_contig00037514
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00037514
(492 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group] 60 3e-07
dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica ... 60 4e-07
gb|EEC76787.1| hypothetical protein OsI_14890 [Oryza sativa Indi... 59 7e-07
gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza s... 58 1e-06
gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|ABA98555.1| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-... 58 1e-06
gb|AAX92828.1| retrotransposon protein, putative, Ty1-copia sub-... 58 1e-06
gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-... 58 1e-06
gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Jap... 58 1e-06
emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group] gi... 58 1e-06
gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|ABF98943.1| retrotransposon protein, putative, unclassified, ... 58 1e-06
gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subc... 58 1e-06
gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group] 58 1e-06
>emb|CAD40744.2| OSJNBa0072D21.4 [Oryza sativa Japonica Group]
Length = 1319
Score = 60.1 bits (144), Expect = 3e-07
Identities = 44/153 (28%), Positives = 60/153 (39%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTS------------------ 238
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 239 ---------NTKAQVNVVXXXXXXXXXXXXXXXXXXXXXPYLSGN*RHFRDHGEPFCS*V 391
+T +V++ L GN H HG
Sbjct: 288 LPTVFSVNQSTNWRVDIGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>dbj|BAC65862.1| hypothetical polyprotein [Oryza sativa Japonica Group]
Length = 1268
Score = 59.7 bits (143), Expect = 4e-07
Identities = 46/156 (29%), Positives = 68/156 (43%), Gaps = 14/156 (8%)
Frame = +2
Query: 65 HLTRKNSKIRK*RTR*NPNQRFKRKM*PKP---CWACGQVGHYAKFCPKRKDKEKNQSNT 235
H + N+K K + FK+K K C+ CG+ GH+AK CP+RKDK+
Sbjct: 182 HASHNNNKKVKPDVKPKATTNFKKKGKGKAKGDCFVCGKPGHWAKDCPERKDKKSANMVI 241
Query: 236 SNT-------KAQVNVVXXXXXXXXXXXXXXXXXXXXXPYLSGN*RHFRDH----GEPFC 382
S K V+ L + + R G
Sbjct: 242 SEDGGTLGYGKFLPTVLSVCHSPDWWVDTGANIHVCADISLFSSYQVGRGSSLLMGNGSL 301
Query: 383 S*VFGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+ V G+G VDL+FTSGK++ L V HVP++++NL+S
Sbjct: 302 AAVHGVGTVDLKFTSGKIVQLKNVQHVPSIKKNLVS 337
>gb|EEC76787.1| hypothetical protein OsI_14890 [Oryza sativa Indica Group]
Length = 330
Score = 58.9 bits (141), Expect = 7e-07
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 17/159 (10%)
Frame = +2
Query: 65 HLTRKNSKIR---K*RTR*NPNQRFKRKM*PKP---CWACGQVGHYAKFCPKRKDKE--- 217
H + N K++ K + N FK+K K C+ CG+ GH+AK CP+RKD++
Sbjct: 107 HASHNNKKVKPDVKPDVKPNAATNFKKKGKGKAKGDCFVCGKSGHWAKDCPERKDRKSAN 166
Query: 218 ----KNQSNTSNTKAQVNVVXXXXXXXXXXXXXXXXXXXXXPYLSGN*RHFRDH----GE 373
+ + K + V+ L + + R G
Sbjct: 167 MVISEGGGTSGYGKILLTVLSVFHSPDWWVDTGANIHVCADISLFSSYQVRRGSSLLMGN 226
Query: 374 PFCS*VFGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+ V G+G VDL+FTSGK + L V HVP++++NL+S
Sbjct: 227 GSLAAVHGVGTVDLKFTSGKTVQLKNVQHVPSIKKNLVS 265
>gb|AAN61480.1| Putative polyprotein from transposon TNT [Oryza sativa Japonica
Group]
Length = 1911
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|ABA95768.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1151
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 105 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 158
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 159 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 211
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 212 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 242
>gb|ABA97938.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|ABA98555.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1361
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 319 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSADVTIGNIGDGSGYGN 372
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 373 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 425
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 426 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 456
>gb|ABA99836.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1302
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|ABA91250.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|ABA93952.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1336
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANIHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|AAX96223.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|77549882|gb|ABA92679.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1302
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|AAX92828.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group] gi|62733724|gb|AAX95834.1|
retrotransposon protein, putative, Ty1-copia sub-class
[Oryza sativa Japonica Group] gi|77550359|gb|ABA93156.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 1277
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|AAX96832.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza
sativa Japonica Group]
Length = 1320
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|AAK84454.1|AC087192_15 putative polyprotein [Oryza sativa Japonica Group]
Length = 1308
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>emb|CAE03086.1| OSJNBa0017B10.1 [Oryza sativa Japonica Group]
gi|38345937|emb|CAD41412.2| OSJNBb0078D11.12 [Oryza
sativa Japonica Group]
Length = 1320
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|AAP54573.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|ABA91445.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|ABF98943.1| retrotransposon protein, putative, unclassified, expressed [Oryza
sativa Japonica Group]
Length = 1460
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|ABF98853.1| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1320
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 234 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 287
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 288 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 340
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 341 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 371
>gb|AAU44026.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1391
Score = 58.2 bits (139), Expect = 1e-06
Identities = 46/153 (30%), Positives = 58/153 (37%), Gaps = 27/153 (17%)
Frame = +2
Query: 113 NPNQRFKRKM*PKPCWACGQVGHYAKFCPKRKDKEKNQSNTSN----------------- 241
NPNQ + C+ CGQVGH A+ CP+RK + TS
Sbjct: 323 NPNQD------ERTCFVCGQVGHLARKCPQRKGMKAPAGQTSKSANVTIGNTGDGSGYGN 376
Query: 242 --TKAQVNVVXXXXXXXXXXXXXXXXXXXXXPY--------LSGN*RHFRDHGEPFCS*V 391
T VN Y L GN H HG
Sbjct: 377 LPTVFSVNQSTNWWVDTGANVHVCADISLFSSYQVARGSTVLMGNGSHASVHG------- 429
Query: 392 FGIGQVDLRFTSGKVLSLHEVHHVPTVRRNLIS 490
+G VDL+FTSGK++ L V HVP++ RNL+S
Sbjct: 430 --VGTVDLKFTSGKIVQLKNVQHVPSIDRNLVS 460