BLASTX nr result
ID: Zingiber25_contig00035953
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00035953
(310 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_006851104.1| hypothetical protein AMTR_s00025p00247730 [A... 95 1e-17
gb|AAG10148.1|AF250342_1 SMC-related protein MSS2 [Arabidopsis t... 90 4e-16
ref|NP_197096.1| structural maintenance of chromosomes 5 [Arabid... 90 4e-16
emb|CAD59412.1| SMC5 protein [Oryza sativa] 87 2e-15
ref|XP_006606345.1| PREDICTED: structural maintenance of chromos... 87 2e-15
gb|ESW32007.1| hypothetical protein PHAVU_002G285500g [Phaseolus... 87 3e-15
ref|XP_006289468.1| hypothetical protein CARUB_v10002997mg [Caps... 86 4e-15
ref|XP_006400118.1| hypothetical protein EUTSA_v10012535mg [Eutr... 86 5e-15
ref|XP_002871691.1| structural maintenance of chromosomes family... 86 5e-15
gb|EXB95294.1| hypothetical protein L484_007938 [Morus notabilis] 85 1e-14
ref|XP_002272410.1| PREDICTED: structural maintenance of chromos... 85 1e-14
emb|CAN82944.1| hypothetical protein VITISV_027872 [Vitis vinifera] 85 1e-14
ref|XP_003613415.1| Structural maintenance of chromosomes protei... 84 2e-14
ref|XP_006655666.1| PREDICTED: structural maintenance of chromos... 84 3e-14
ref|NP_001056521.1| Os05g0596600 [Oryza sativa Japonica Group] g... 83 3e-14
gb|EEE64923.1| hypothetical protein OsJ_19783 [Oryza sativa Japo... 83 3e-14
gb|EEC79808.1| hypothetical protein OsI_21247 [Oryza sativa Indi... 83 3e-14
ref|XP_004229659.1| PREDICTED: structural maintenance of chromos... 83 4e-14
ref|XP_004499935.1| PREDICTED: structural maintenance of chromos... 82 6e-14
ref|XP_006345408.1| PREDICTED: structural maintenance of chromos... 81 1e-13
>ref|XP_006851104.1| hypothetical protein AMTR_s00025p00247730 [Amborella trichopoda]
gi|548854775|gb|ERN12685.1| hypothetical protein
AMTR_s00025p00247730 [Amborella trichopoda]
Length = 994
Score = 94.7 bits (234), Expect = 1e-17
Identities = 43/56 (76%), Positives = 49/56 (87%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M+ER AKR K ++RGEDD+LPGNI+EIE NFMTY HLKC+P SRLNLVIGPNGSG
Sbjct: 1 MEERSAKRRKANERGEDDYLPGNIIEIEIHNFMTYNHLKCKPGSRLNLVIGPNGSG 56
>gb|AAG10148.1|AF250342_1 SMC-related protein MSS2 [Arabidopsis thaliana]
Length = 284
Score = 89.7 bits (221), Expect = 4e-16
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M ER AKRPK+ RGEDDFLPGNI+EIE NFMT+ HL C+P SRLNLVIGPNGSG
Sbjct: 1 MSERRAKRPKI-SRGEDDFLPGNIIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSG 55
>ref|NP_197096.1| structural maintenance of chromosomes 5 [Arabidopsis thaliana]
gi|75263870|sp|Q9LFS8.1|SMC5_ARATH RecName:
Full=Structural maintenance of chromosomes protein 5;
AltName: Full=Protein EMBRYO DEFECTIVE 2782
gi|9755638|emb|CAC01791.1| putative protein [Arabidopsis
thaliana] gi|332004841|gb|AED92224.1| structural
maintenance of chromosomes 5 [Arabidopsis thaliana]
Length = 1053
Score = 89.7 bits (221), Expect = 4e-16
Identities = 43/56 (76%), Positives = 47/56 (83%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M ER AKRPK+ RGEDDFLPGNI+EIE NFMT+ HL C+P SRLNLVIGPNGSG
Sbjct: 1 MSERRAKRPKI-SRGEDDFLPGNIIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSG 55
>emb|CAD59412.1| SMC5 protein [Oryza sativa]
Length = 1056
Score = 87.0 bits (214), Expect = 2e-15
Identities = 39/57 (68%), Positives = 46/57 (80%)
Frame = -2
Query: 171 LMKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
+ R AKRPK+ RG+DD++PGNIVEIE CNFMTY HL C+P RLNLV+GPNGSG
Sbjct: 1 MASSRAAKRPKV-DRGDDDYVPGNIVEIELCNFMTYDHLTCRPGPRLNLVVGPNGSG 56
>ref|XP_006606345.1| PREDICTED: structural maintenance of chromosomes protein 5-like
[Glycine max]
Length = 1052
Score = 87.0 bits (214), Expect = 2e-15
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = -2
Query: 171 LMKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
+ + RP KRPK+ RG+DD++PGNI+EIE CNFMT+ +LKC+P RLNLVIGPNGSG
Sbjct: 1 MAESRPPKRPKI-SRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSG 56
>gb|ESW32007.1| hypothetical protein PHAVU_002G285500g [Phaseolus vulgaris]
Length = 1053
Score = 86.7 bits (213), Expect = 3e-15
Identities = 38/57 (66%), Positives = 48/57 (84%)
Frame = -2
Query: 171 LMKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
+ + RP KRPK+ RG+DD++PGNI+EIE CNFMT+ +LKC+P RLNLVIGPNGSG
Sbjct: 1 MSESRPPKRPKI-TRGDDDYMPGNILEIELCNFMTFDYLKCKPGPRLNLVIGPNGSG 56
>ref|XP_006289468.1| hypothetical protein CARUB_v10002997mg [Capsella rubella]
gi|482558174|gb|EOA22366.1| hypothetical protein
CARUB_v10002997mg [Capsella rubella]
Length = 1052
Score = 86.3 bits (212), Expect = 4e-15
Identities = 42/56 (75%), Positives = 46/56 (82%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M ER AKR K+ RGEDDFLPGNI+EIE NFMT+ HL C+P SRLNLVIGPNGSG
Sbjct: 1 MSERRAKRHKI-SRGEDDFLPGNIIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSG 55
>ref|XP_006400118.1| hypothetical protein EUTSA_v10012535mg [Eutrema salsugineum]
gi|557101208|gb|ESQ41571.1| hypothetical protein
EUTSA_v10012535mg [Eutrema salsugineum]
Length = 1052
Score = 85.9 bits (211), Expect = 5e-15
Identities = 42/56 (75%), Positives = 46/56 (82%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M ER AKR K+ RGEDDFLPGNI+EIE NFMT+ HL C+P SRLNLVIGPNGSG
Sbjct: 1 MSERRAKRLKI-SRGEDDFLPGNIIEIELHNFMTFNHLVCKPGSRLNLVIGPNGSG 55
>ref|XP_002871691.1| structural maintenance of chromosomes family protein [Arabidopsis
lyrata subsp. lyrata] gi|297317528|gb|EFH47950.1|
structural maintenance of chromosomes family protein
[Arabidopsis lyrata subsp. lyrata]
Length = 1052
Score = 85.9 bits (211), Expect = 5e-15
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M ER AKRPK+ RG DDFLPGNI++IE NFMT+ HL C+P SRLNLVIGPNGSG
Sbjct: 1 MSERRAKRPKI-SRGGDDFLPGNIIDIELHNFMTFNHLVCKPGSRLNLVIGPNGSG 55
>gb|EXB95294.1| hypothetical protein L484_007938 [Morus notabilis]
Length = 1112
Score = 84.7 bits (208), Expect = 1e-14
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M E AKRPK+ RGEDD++PGNI EIE NFMT+ HLKC+P SRLNLVIGPNGSG
Sbjct: 1 MAEPLAKRPKII-RGEDDYMPGNITEIELHNFMTFNHLKCKPGSRLNLVIGPNGSG 55
>ref|XP_002272410.1| PREDICTED: structural maintenance of chromosomes protein 5 [Vitis
vinifera] gi|297736324|emb|CBI24962.3| unnamed protein
product [Vitis vinifera]
Length = 1051
Score = 84.7 bits (208), Expect = 1e-14
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M ER +KRPK+ RGEDD+LPGNI EIE NFMT+ LKC+P SRLNLVIGPNGSG
Sbjct: 1 MAERRSKRPKI-TRGEDDYLPGNITEIELHNFMTFNDLKCKPGSRLNLVIGPNGSG 55
>emb|CAN82944.1| hypothetical protein VITISV_027872 [Vitis vinifera]
Length = 158
Score = 84.7 bits (208), Expect = 1e-14
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M ER +KRPK+ RGEDD+LPGNI EIE NFMT+ LKC+P SRLNLVIGPNGSG
Sbjct: 1 MAERRSKRPKI-TRGEDDYLPGNITEIELHNFMTFNDLKCKPGSRLNLVIGPNGSG 55
>ref|XP_003613415.1| Structural maintenance of chromosomes protein [Medicago truncatula]
gi|355514750|gb|AES96373.1| Structural maintenance of
chromosomes protein [Medicago truncatula]
Length = 438
Score = 84.0 bits (206), Expect = 2e-14
Identities = 38/53 (71%), Positives = 46/53 (86%)
Frame = -2
Query: 159 RPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
RP+KRPK+ RGEDD++PGNI+EIE NFMT+ +LKC+P RLNLVIGPNGSG
Sbjct: 6 RPSKRPKI-TRGEDDYMPGNIIEIELHNFMTFDYLKCKPGPRLNLVIGPNGSG 57
>ref|XP_006655666.1| PREDICTED: structural maintenance of chromosomes protein 5-like
[Oryza brachyantha]
Length = 1055
Score = 83.6 bits (205), Expect = 3e-14
Identities = 40/58 (68%), Positives = 45/58 (77%), Gaps = 5/58 (8%)
Frame = -2
Query: 159 RPAKRPKLH-----QRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
R AKRPKL QRG+DD++PGNIVEIE NFMTY HL C+P RLNLV+GPNGSG
Sbjct: 5 RAAKRPKLDSSSGPQRGDDDYVPGNIVEIELFNFMTYDHLTCRPGPRLNLVVGPNGSG 62
>ref|NP_001056521.1| Os05g0596600 [Oryza sativa Japonica Group]
gi|57900674|gb|AAW57799.1| putative SMC5 protein [Oryza
sativa Japonica Group] gi|113580072|dbj|BAF18435.1|
Os05g0596600 [Oryza sativa Japonica Group]
gi|215768112|dbj|BAH00341.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 1065
Score = 83.2 bits (204), Expect = 3e-14
Identities = 40/72 (55%), Positives = 47/72 (65%), Gaps = 15/72 (20%)
Frame = -2
Query: 171 LMKERPAKRPKLH---------------QRGEDDFLPGNIVEIEACNFMTYKHLKCQPAS 37
+ R AKRPK+ QRG+DD++PGNIVEIE CNFMTY HL C+P
Sbjct: 1 MASSRAAKRPKVDPSSSSSAPPPPPPPPQRGDDDYVPGNIVEIELCNFMTYDHLTCRPGP 60
Query: 36 RLNLVIGPNGSG 1
RLNLV+GPNGSG
Sbjct: 61 RLNLVVGPNGSG 72
>gb|EEE64923.1| hypothetical protein OsJ_19783 [Oryza sativa Japonica Group]
Length = 1103
Score = 83.2 bits (204), Expect = 3e-14
Identities = 40/72 (55%), Positives = 47/72 (65%), Gaps = 15/72 (20%)
Frame = -2
Query: 171 LMKERPAKRPKLH---------------QRGEDDFLPGNIVEIEACNFMTYKHLKCQPAS 37
+ R AKRPK+ QRG+DD++PGNIVEIE CNFMTY HL C+P
Sbjct: 1 MASSRAAKRPKVDPSSSSSAPPPPPPPPQRGDDDYVPGNIVEIELCNFMTYDHLTCRPGP 60
Query: 36 RLNLVIGPNGSG 1
RLNLV+GPNGSG
Sbjct: 61 RLNLVVGPNGSG 72
>gb|EEC79808.1| hypothetical protein OsI_21247 [Oryza sativa Indica Group]
Length = 1179
Score = 83.2 bits (204), Expect = 3e-14
Identities = 40/72 (55%), Positives = 47/72 (65%), Gaps = 15/72 (20%)
Frame = -2
Query: 171 LMKERPAKRPKLH---------------QRGEDDFLPGNIVEIEACNFMTYKHLKCQPAS 37
+ R AKRPK+ QRG+DD++PGNIVEIE CNFMTY HL C+P
Sbjct: 1 MASSRAAKRPKVDPSSSSSAPPPPPPPPQRGDDDYVPGNIVEIELCNFMTYDHLTCRPGP 60
Query: 36 RLNLVIGPNGSG 1
RLNLV+GPNGSG
Sbjct: 61 RLNLVVGPNGSG 72
>ref|XP_004229659.1| PREDICTED: structural maintenance of chromosomes protein 5-like
[Solanum lycopersicum]
Length = 1050
Score = 82.8 bits (203), Expect = 4e-14
Identities = 40/56 (71%), Positives = 45/56 (80%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M ER AKRPK+ RGEDD++PGNI EIE NFMT+ L C+P SRLNLVIGPNGSG
Sbjct: 1 MAERRAKRPKI-TRGEDDYMPGNITEIELHNFMTFSKLTCKPGSRLNLVIGPNGSG 55
>ref|XP_004499935.1| PREDICTED: structural maintenance of chromosomes protein 5-like
isoform X1 [Cicer arietinum]
gi|502128361|ref|XP_004499936.1| PREDICTED: structural
maintenance of chromosomes protein 5-like isoform X2
[Cicer arietinum]
Length = 1052
Score = 82.4 bits (202), Expect = 6e-14
Identities = 37/57 (64%), Positives = 47/57 (82%)
Frame = -2
Query: 171 LMKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
+ + RP KRPK+ RG+DD++PGNI+EIE NFMT+ +LKC+P RLNLVIGPNGSG
Sbjct: 1 MAEPRPPKRPKI-SRGDDDYMPGNILEIELYNFMTFDYLKCKPGPRLNLVIGPNGSG 56
>ref|XP_006345408.1| PREDICTED: structural maintenance of chromosomes protein 5-like
[Solanum tuberosum]
Length = 1050
Score = 81.3 bits (199), Expect = 1e-13
Identities = 39/56 (69%), Positives = 44/56 (78%)
Frame = -2
Query: 168 MKERPAKRPKLHQRGEDDFLPGNIVEIEACNFMTYKHLKCQPASRLNLVIGPNGSG 1
M ER AKRPK+ RGEDD++PGNI EIE NFMT+ L C+P RLNLVIGPNGSG
Sbjct: 1 MSERRAKRPKI-TRGEDDYMPGNITEIELHNFMTFSKLTCKPGPRLNLVIGPNGSG 55