BLASTX nr result
ID: Zingiber25_contig00034221
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00034221
(299 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002986984.1| hypothetical protein SELMODRAFT_235152 [Sela... 64 2e-08
ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Sela... 64 2e-08
ref|XP_003563135.1| PREDICTED: DNA-directed RNA polymerase III s... 59 5e-07
ref|XP_004957678.1| PREDICTED: DNA-directed RNA polymerase III s... 58 2e-06
gb|EMS65056.1| hypothetical protein TRIUR3_25018 [Triticum urartu] 58 2e-06
ref|XP_006657688.1| PREDICTED: DNA-directed RNA polymerase III s... 57 2e-06
gb|EMT04694.1| DNA-directed RNA polymerase III subunit RPC8 [Aeg... 57 3e-06
gb|EMS46002.1| DNA-directed RNA polymerase III subunit RPC8 [Tri... 57 3e-06
dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare] 57 3e-06
ref|XP_003580811.1| PREDICTED: DNA-directed RNA polymerase III s... 57 3e-06
ref|XP_001751839.1| predicted protein [Physcomitrella patens] gi... 57 3e-06
ref|NP_001059628.1| Os07g0477000 [Oryza sativa Japonica Group] g... 56 4e-06
gb|EEE67155.1| hypothetical protein OsJ_24224 [Oryza sativa Japo... 56 4e-06
ref|XP_002460684.1| hypothetical protein SORBIDRAFT_02g033110 [S... 56 6e-06
gb|EMT18324.1| DNA-directed RNA polymerase III subunit RPC8 [Aeg... 55 7e-06
ref|XP_004242644.1| PREDICTED: DNA-directed RNA polymerase III s... 55 7e-06
tpg|DAA62512.1| TPA: DNA-directed RNA polymerase III subunit pol... 55 7e-06
gb|ACR34942.1| unknown [Zea mays] 55 7e-06
ref|NP_001147612.1| DNA-directed RNA polymerase III subunit 22.9... 55 7e-06
ref|XP_006343568.1| PREDICTED: DNA-directed RNA polymerase III s... 55 1e-05
>ref|XP_002986984.1| hypothetical protein SELMODRAFT_235152 [Selaginella moellendorffii]
gi|300145389|gb|EFJ12066.1| hypothetical protein
SELMODRAFT_235152 [Selaginella moellendorffii]
Length = 155
Score = 63.9 bits (154), Expect = 2e-08
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = -1
Query: 296 KINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWW 183
K+ YP PLEQ+ +AQPFAPM++IG+I DGLGL+SWW
Sbjct: 118 KVRYPPIPLEQERDAQPFAPMEVIGDINSDGLGLVSWW 155
>ref|XP_002988954.1| hypothetical protein SELMODRAFT_128885 [Selaginella moellendorffii]
gi|300143291|gb|EFJ09983.1| hypothetical protein
SELMODRAFT_128885 [Selaginella moellendorffii]
Length = 187
Score = 63.9 bits (154), Expect = 2e-08
Identities = 25/38 (65%), Positives = 32/38 (84%)
Frame = -1
Query: 296 KINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWW 183
K+ YP PLEQ+ +AQPFAPM++IG+I DGLGL+SWW
Sbjct: 150 KVRYPPIPLEQERDAQPFAPMEVIGDINSDGLGLVSWW 187
>ref|XP_003563135.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 59.3 bits (142), Expect = 5e-07
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = -1
Query: 293 INYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
I YP P+EQ + +PFAPMQIIG I GDGLGL++WWA
Sbjct: 151 IKYPPIPVEQKEDDKPFAPMQIIGSIKGDGLGLLAWWA 188
>ref|XP_004957678.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc8-like
isoform X2 [Setaria italica]
Length = 200
Score = 57.8 bits (138), Expect = 2e-06
Identities = 23/36 (63%), Positives = 29/36 (80%)
Frame = -1
Query: 287 YPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
YP P+EQ A+ PF+PMQI+G I GDGLGL++WWA
Sbjct: 153 YPPIPIEQKADDPPFSPMQIVGSIKGDGLGLLAWWA 188
>gb|EMS65056.1| hypothetical protein TRIUR3_25018 [Triticum urartu]
Length = 177
Score = 57.8 bits (138), Expect = 2e-06
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = -1
Query: 299 TKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
+ I YP P+EQ + +PFAPMQI G I GDGLGLI+WWA
Sbjct: 116 SSIKYPPIPVEQKEDDKPFAPMQINGSIKGDGLGLIAWWA 155
>ref|XP_006657688.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like [Oryza
brachyantha]
Length = 200
Score = 57.4 bits (137), Expect = 2e-06
Identities = 24/39 (61%), Positives = 28/39 (71%)
Frame = -1
Query: 299 TKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWW 183
+ I YP P+EQ PFAPMQIIG I GDGLGL++WW
Sbjct: 149 SSIKYPPIPVEQKETDSPFAPMQIIGSIKGDGLGLLAWW 187
>gb|EMT04694.1| DNA-directed RNA polymerase III subunit RPC8 [Aegilops tauschii]
Length = 271
Score = 57.0 bits (136), Expect = 3e-06
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = -1
Query: 299 TKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
+ I YP P+EQ + +PFAPMQI G I GDGLGL++WWA
Sbjct: 212 SSIKYPPIPVEQKEDDKPFAPMQINGSIKGDGLGLLAWWA 251
>gb|EMS46002.1| DNA-directed RNA polymerase III subunit RPC8 [Triticum urartu]
Length = 200
Score = 57.0 bits (136), Expect = 3e-06
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = -1
Query: 299 TKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
+ I YP P+EQ + +PFAPMQI G I GDGLGL++WWA
Sbjct: 137 SSIKYPPIPVEQKEDDKPFAPMQINGSIKGDGLGLLAWWA 176
>dbj|BAK08181.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 210
Score = 57.0 bits (136), Expect = 3e-06
Identities = 24/40 (60%), Positives = 30/40 (75%)
Frame = -1
Query: 299 TKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
+ I YP P+EQ + +PFAPMQI G I GDGLGL++WWA
Sbjct: 149 SSIKYPPIPVEQKEDDRPFAPMQINGSIKGDGLGLLAWWA 188
>ref|XP_003580811.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Brachypodium distachyon]
Length = 200
Score = 56.6 bits (135), Expect = 3e-06
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = -1
Query: 293 INYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
I YP P+EQ + +PFAPMQI G I GDGLGL++WWA
Sbjct: 151 IKYPPIPVEQKEDDKPFAPMQINGSIKGDGLGLLAWWA 188
>ref|XP_001751839.1| predicted protein [Physcomitrella patens]
gi|162696937|gb|EDQ83274.1| predicted protein
[Physcomitrella patens]
Length = 189
Score = 56.6 bits (135), Expect = 3e-06
Identities = 21/39 (53%), Positives = 31/39 (79%)
Frame = -1
Query: 296 KINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
++ YP P+EQ+ +A+PFAPM I G+I DGLGL++WW+
Sbjct: 151 QVKYPPIPIEQEKDARPFAPMAITGDINADGLGLVAWWS 189
>ref|NP_001059628.1| Os07g0477000 [Oryza sativa Japonica Group]
gi|29837202|dbj|BAC75582.1| putative DNA-directed RNA
polymerase III subunit 22.9 kDa polypeptide [Oryza
sativa Japonica Group] gi|113611164|dbj|BAF21542.1|
Os07g0477000 [Oryza sativa Japonica Group]
gi|215765537|dbj|BAG87234.1| unnamed protein product
[Oryza sativa Japonica Group]
gi|218199590|gb|EEC82017.1| hypothetical protein
OsI_25976 [Oryza sativa Indica Group]
Length = 202
Score = 56.2 bits (134), Expect = 4e-06
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = -1
Query: 299 TKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
+ I YP P+EQ + FAPMQIIG I GDGLGL++WWA
Sbjct: 149 SSIKYPPIPVEQKETDRAFAPMQIIGSIKGDGLGLLAWWA 188
>gb|EEE67155.1| hypothetical protein OsJ_24224 [Oryza sativa Japonica Group]
Length = 365
Score = 56.2 bits (134), Expect = 4e-06
Identities = 24/40 (60%), Positives = 29/40 (72%)
Frame = -1
Query: 299 TKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
+ I YP P+EQ + FAPMQIIG I GDGLGL++WWA
Sbjct: 312 SSIKYPPIPVEQKETDRAFAPMQIIGSIKGDGLGLLAWWA 351
>ref|XP_002460684.1| hypothetical protein SORBIDRAFT_02g033110 [Sorghum bicolor]
gi|241924061|gb|EER97205.1| hypothetical protein
SORBIDRAFT_02g033110 [Sorghum bicolor]
Length = 202
Score = 55.8 bits (133), Expect = 6e-06
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = -1
Query: 287 YPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
YP P++Q + PFAPMQI+G I GDGLGL++WWA
Sbjct: 153 YPRIPIDQKEDDPPFAPMQIVGSIKGDGLGLLAWWA 188
>gb|EMT18324.1| DNA-directed RNA polymerase III subunit RPC8 [Aegilops tauschii]
Length = 223
Score = 55.5 bits (132), Expect = 7e-06
Identities = 23/39 (58%), Positives = 29/39 (74%)
Frame = -1
Query: 299 TKINYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWW 183
+ I YP P+EQ + +PFAPMQI G I GDGLGL++WW
Sbjct: 138 SSIKYPPIPVEQKEDDKPFAPMQINGSIKGDGLGLLAWW 176
>ref|XP_004242644.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Solanum lycopersicum]
Length = 193
Score = 55.5 bits (132), Expect = 7e-06
Identities = 23/37 (62%), Positives = 29/37 (78%)
Frame = -1
Query: 293 INYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWW 183
++YPS PLEQD +++PFAPM I G + DGLG ISWW
Sbjct: 156 VSYPSMPLEQDKDSKPFAPMVIKGSLDADGLGPISWW 192
>tpg|DAA62512.1| TPA: DNA-directed RNA polymerase III subunit polypeptide [Zea mays]
Length = 290
Score = 55.5 bits (132), Expect = 7e-06
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = -1
Query: 287 YPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
YP P++Q+ + PFAPMQI+G I GDGLGL+ WWA
Sbjct: 241 YPPIPIDQNEDDPPFAPMQIVGSIKGDGLGLLVWWA 276
>gb|ACR34942.1| unknown [Zea mays]
Length = 202
Score = 55.5 bits (132), Expect = 7e-06
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = -1
Query: 287 YPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
YP P++Q+ + PFAPMQI+G I GDGLGL+ WWA
Sbjct: 153 YPPIPIDQNEDDPPFAPMQIVGSIKGDGLGLLVWWA 188
>ref|NP_001147612.1| DNA-directed RNA polymerase III subunit 22.9 kDa polypeptide [Zea
mays] gi|195612502|gb|ACG28081.1| DNA-directed RNA
polymerase III subunit 22.9 kDa polypeptide [Zea mays]
Length = 202
Score = 55.5 bits (132), Expect = 7e-06
Identities = 22/36 (61%), Positives = 28/36 (77%)
Frame = -1
Query: 287 YPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWWA 180
YP P++Q+ + PFAPMQI+G I GDGLGL+ WWA
Sbjct: 153 YPPIPIDQNEDDPPFAPMQIVGSIKGDGLGLLVWWA 188
>ref|XP_006343568.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC8-like
[Solanum tuberosum]
Length = 193
Score = 55.1 bits (131), Expect = 1e-05
Identities = 23/37 (62%), Positives = 28/37 (75%)
Frame = -1
Query: 293 INYPSSPLEQDANAQPFAPMQIIGEIYGDGLGLISWW 183
++YPS PLEQD ++ PFAPM I G + DGLG ISWW
Sbjct: 156 VSYPSMPLEQDKDSNPFAPMVIKGSLDADGLGPISWW 192