BLASTX nr result
ID: Zingiber25_contig00033440
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00033440
(804 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc... 221 2e-55
ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transc... 214 4e-53
gb|AGQ44775.1| general transcription factor [Camellia sinensis] 214 4e-53
ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transc... 210 5e-52
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc... 198 2e-48
ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transc... 197 3e-48
ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citr... 197 3e-48
ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citr... 197 3e-48
gb|EMJ24087.1| hypothetical protein PRUPE_ppa003591mg [Prunus pe... 191 2e-46
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g... 186 1e-44
ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [A... 183 5e-44
ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arab... 183 5e-44
ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transc... 182 9e-44
ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Caps... 182 1e-43
ref|NP_175971.3| probable RNA polymerase II transcription factor... 181 2e-43
ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transc... 181 3e-43
emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera] 179 1e-42
dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare] 177 5e-42
ref|XP_006392607.1| hypothetical protein EUTSA_v10011333mg [Eutr... 175 1e-41
ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [S... 175 1e-41
>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1 [Vitis vinifera]
gi|296090002|emb|CBI39821.3| unnamed protein product
[Vitis vinifera]
Length = 602
Score = 221 bits (564), Expect = 2e-55
Identities = 109/162 (67%), Positives = 133/162 (82%), Gaps = 1/162 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
++AY L ISE+K G+ +P+V+ D ALKVL GLTQ ISST+++LGKNPQESVLDR P
Sbjct: 441 QEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLP 500
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
TK+E++ HW SIQELLRHFWSSYPITT YLY K RLK AM+ IY KL+ IK+ VQSD
Sbjct: 501 IITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSD 560
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGFV 320
FRHQ+SLL+QPMLQ+LDAAFAHYDA++ K SA++G +PNGFV
Sbjct: 561 FRHQVSLLVQPMLQALDAAFAHYDADQQKRSARSGERPNGFV 602
>ref|XP_006352543.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Solanum tuberosum]
Length = 599
Score = 214 bits (544), Expect = 4e-53
Identities = 104/162 (64%), Positives = 127/162 (78%), Gaps = 1/162 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
E+A+ L ISE+ QG+ P++ + ALKV GL+Q ISST+Y LGKNP ESVLD+ P
Sbjct: 438 EEAFCSLKDSISEINSQGLIEPIISPEVALKVFNGLSQNISSTKYYLGKNPHESVLDQLP 497
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
TK+E++LHW SIQELL+HFWSSYPITT Y Y KV RLK AM+ IY KL+ IK+ VQSD
Sbjct: 498 SATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSD 557
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGFV 320
RHQ+SLL+QPMLQ+LDAAFAHYDA+ K SAK+G +PNGFV
Sbjct: 558 VRHQVSLLVQPMLQALDAAFAHYDADIQKRSAKSGERPNGFV 599
>gb|AGQ44775.1| general transcription factor [Camellia sinensis]
Length = 340
Score = 214 bits (544), Expect = 4e-53
Identities = 106/161 (65%), Positives = 130/161 (80%), Gaps = 1/161 (0%)
Frame = -3
Query: 799 DAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFPK 620
+AY L + ISE+K+ G+ +P+V+ + A KV GLTQ ISST+Y+LGKNPQESVLDR P
Sbjct: 180 EAYGSLRECISEIKIAGLSDPIVKPEIAFKVFNGLTQNISSTKYHLGKNPQESVLDRLPN 239
Query: 619 RTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSDF 443
TKDE++ HW SIQELL+HFWSSYPITT+YLY KV RLK AM+ IY KL+ IK+ VQSDF
Sbjct: 240 ITKDELLHHWTSIQELLKHFWSSYPITTSYLYVKVGRLKDAMSQIYPKLQEIKESVQSDF 299
Query: 442 RHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGFV 320
RHQ+SLL+QPMLQ+LDAAFA YDA+ K SAK G + NG+V
Sbjct: 300 RHQVSLLVQPMLQALDAAFARYDADLQKRSAKGGDRTNGYV 340
>ref|XP_004248296.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Solanum lycopersicum]
Length = 599
Score = 210 bits (534), Expect = 5e-52
Identities = 102/162 (62%), Positives = 127/162 (78%), Gaps = 1/162 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
E+A+ L ISE+ QG+ P++ + ALKV L+Q ISST+Y+LGKNP ESVLD+ P
Sbjct: 438 EEAFCSLKDSISEINSQGLIEPIISPEVALKVFNLLSQNISSTKYHLGKNPHESVLDQLP 497
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
TK+E++LHW SIQELL+HFWSSYPITT Y Y KV RLK AM+ IY KL+ IK+ VQSD
Sbjct: 498 SATKNELLLHWTSIQELLKHFWSSYPITTKYFYAKVTRLKDAMSQIYPKLQEIKESVQSD 557
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGFV 320
RHQ+SLL+QPMLQ+LDAAFAHYDA+ K SA++G +PNGFV
Sbjct: 558 VRHQVSLLVQPMLQALDAAFAHYDADLQKRSARSGERPNGFV 599
>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B subunit
1-1-like [Cucumis sativus]
Length = 729
Score = 198 bits (503), Expect = 2e-48
Identities = 94/160 (58%), Positives = 126/160 (78%), Gaps = 1/160 (0%)
Frame = -3
Query: 799 DAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFPK 620
+AY L + ISE+K G ++P+++ + AL V GLTQ ISST+Y LGKNPQES+L+ P
Sbjct: 569 EAYGSLRESISEIKSSGFNHPIIKPEVALMVYNGLTQNISSTKYQLGKNPQESILESLPN 628
Query: 619 RTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSDF 443
TK+E++ HW+SIQELL+HFWSSYPITT+YLY KV RLK AMA IY++L+ IK+ V +DF
Sbjct: 629 PTKEELLHHWISIQELLKHFWSSYPITTSYLYTKVSRLKDAMAKIYRQLEEIKETVVADF 688
Query: 442 RHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGF 323
RHQ+SLL++PM Q+LDAAF H+DA+ K S K+G + NG+
Sbjct: 689 RHQVSLLVRPMHQALDAAFQHHDADMQKRSVKSGERLNGY 728
>ref|XP_006474796.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Citrus sinensis]
Length = 597
Score = 197 bits (502), Expect = 3e-48
Identities = 92/162 (56%), Positives = 128/162 (79%), Gaps = 1/162 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
++AY + ISE+K G+ +P+V + ALKV +GLT ISS +Y+LGKNP+E+VLDR P
Sbjct: 436 QEAYRSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLP 495
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
TK++++ HWMSIQELL+HFWSSYPITT YLY+KV RLK A+++IY +L+ +K+ + +D
Sbjct: 496 SATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPAD 555
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGFV 320
RHQ+SLL++PM Q+LDAA HYDA+ K SAK+G KPNG++
Sbjct: 556 LRHQVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNGYI 597
>ref|XP_006452718.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
gi|557555944|gb|ESR65958.1| hypothetical protein
CICLE_v10007802mg [Citrus clementina]
Length = 564
Score = 197 bits (502), Expect = 3e-48
Identities = 93/162 (57%), Positives = 128/162 (79%), Gaps = 1/162 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
++AY + ISE+K G+ +P+V + ALKV +GLT ISS +Y+LGKNP+E+VLDR P
Sbjct: 403 QEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLP 462
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
TK++++ HWMSIQELL+HFWSSYPITT YLY+KV RLK A+++IY +L+ +K+ + +D
Sbjct: 463 SATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPAD 522
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGFV 320
RHQ+SLL++PM Q+LDAA HYDA+ K SAK+G KPNG+V
Sbjct: 523 LRHQVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNGYV 564
>ref|XP_006452717.1| hypothetical protein CICLE_v10007802mg [Citrus clementina]
gi|557555943|gb|ESR65957.1| hypothetical protein
CICLE_v10007802mg [Citrus clementina]
Length = 597
Score = 197 bits (502), Expect = 3e-48
Identities = 93/162 (57%), Positives = 128/162 (79%), Gaps = 1/162 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
++AY + ISE+K G+ +P+V + ALKV +GLT ISS +Y+LGKNP+E+VLDR P
Sbjct: 436 QEAYGSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKYHLGKNPRETVLDRLP 495
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
TK++++ HWMSIQELL+HFWSSYPITT YLY+KV RLK A+++IY +L+ +K+ + +D
Sbjct: 496 SATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSNIYPQLEEMKESLPAD 555
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGFV 320
RHQ+SLL++PM Q+LDAA HYDA+ K SAK+G KPNG+V
Sbjct: 556 LRHQVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNGYV 597
>gb|EMJ24087.1| hypothetical protein PRUPE_ppa003591mg [Prunus persica]
Length = 563
Score = 191 bits (486), Expect = 2e-46
Identities = 96/160 (60%), Positives = 124/160 (77%), Gaps = 1/160 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
E+AY L + IS++K G+ N V + A+ VL GLTQ ISST+Y LGKNPQ+SVLD P
Sbjct: 404 EEAYGSLREAISKIKSIGLKNSTVAPEIAITVLNGLTQNISSTKYQLGKNPQDSVLDSLP 463
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKDVQSDF 443
+TK+E++ HW+SIQELLRHFWSSYPITT YL KV RLK AM+ IY++L+ IK QSDF
Sbjct: 464 NKTKEELLHHWISIQELLRHFWSSYPITTTYLSTKVGRLKDAMSQIYRQLEEIK--QSDF 521
Query: 442 RHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAK-PNG 326
RHQ+SLL++PM Q+LDAAF H+DA+ K +A++G + PNG
Sbjct: 522 RHQVSLLVRPMHQALDAAFQHFDADLQKRAARSGGETPNG 561
>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
gi|38636938|dbj|BAD03200.1| unknown protein [Oryza
sativa Japonica Group] gi|113623552|dbj|BAF23497.1|
Os08g0338200 [Oryza sativa Japonica Group]
gi|215686948|dbj|BAG90767.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 604
Score = 186 bits (471), Expect = 1e-44
Identities = 94/161 (58%), Positives = 124/161 (77%), Gaps = 1/161 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
+DA+ +LL QIS +K+ G++ PV+QSD ALKVL L + IS +R KNPQ+S+L + P
Sbjct: 445 DDAFDHLLGQISSIKVNGLNYPVIQSDVALKVLNELNEGISRSRRLNLKNPQDSLLGQIP 504
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
+RT+DE+M HW +IQELL+HFWSSYPITT+ LYNKV R+K AM IYQKL+ IK+ Q D
Sbjct: 505 RRTRDELMDHWAAIQELLQHFWSSYPITTSVLYNKVQRIKDAMTQIYQKLQDIKESAQPD 564
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGF 323
RH+IS L++PM Q+LDAAF H D E+ + S+K+G KPNGF
Sbjct: 565 VRHEISQLVKPMTQALDAAFNH-DLEQQQKSSKSGNKPNGF 604
>ref|XP_006857637.1| hypothetical protein AMTR_s00061p00135540 [Amborella trichopoda]
gi|548861733|gb|ERN19104.1| hypothetical protein
AMTR_s00061p00135540 [Amborella trichopoda]
Length = 626
Score = 183 bits (465), Expect = 5e-44
Identities = 94/157 (59%), Positives = 115/157 (73%), Gaps = 1/157 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
+ AY L QI EVK G +P+V D ALKVL + QQ+SST LGKNPQ +VLD P
Sbjct: 445 KQAYESLRAQILEVKSVGFKDPIVIPDLALKVLNDVNQQLSSTDPQLGKNPQATVLDMLP 504
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
RTK+E++ HW SIQELLRHFWSSYP+TT +L+ KV R+K AMA IY+KL +K+ VQS+
Sbjct: 505 HRTKEELLQHWTSIQELLRHFWSSYPLTTTFLHAKVNRVKDAMAQIYRKLPEVKESVQSE 564
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAK 335
FRHQ+SLL++PMLQ LD AF HYDAE K S K +K
Sbjct: 565 FRHQVSLLVKPMLQVLDEAFKHYDAEMQKRSTKTMSK 601
>ref|XP_002894525.1| hypothetical protein ARALYDRAFT_892577 [Arabidopsis lyrata subsp.
lyrata] gi|297340367|gb|EFH70784.1| hypothetical protein
ARALYDRAFT_892577 [Arabidopsis lyrata subsp. lyrata]
Length = 592
Score = 183 bits (465), Expect = 5e-44
Identities = 87/162 (53%), Positives = 125/162 (77%), Gaps = 2/162 (1%)
Frame = -3
Query: 799 DAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFPK 620
+AY L + I E++ G+ +P+++ + + +V + LT+ IS+ + +GKNP+ES LDR PK
Sbjct: 431 EAYGLLKESILEIRATGLSDPLIRPEVSFEVFSSLTRTISTAKNIIGKNPRESFLDRLPK 490
Query: 619 RTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSDF 443
TKDE++ HW SIQELLRHFWSSYPITT YL+ KV +LK AM++ Y KL+A+K+ VQSD
Sbjct: 491 STKDEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDL 550
Query: 442 RHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGA-KPNGFV 320
RHQ+SLL++PM Q+LDAAF HY+A+ + +AK+G +PNG+V
Sbjct: 551 RHQVSLLVRPMQQALDAAFQHYEADLQRRTAKSGGERPNGYV 592
>ref|XP_006660062.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Oryza brachyantha]
Length = 621
Score = 182 bits (463), Expect = 9e-44
Identities = 94/160 (58%), Positives = 120/160 (75%), Gaps = 1/160 (0%)
Frame = -3
Query: 799 DAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFPK 620
DA+ +LL QIS +K+ G++ PVVQSD A KVL L IS TR KNPQ+S+L + P+
Sbjct: 463 DAFDHLLGQISSIKVNGLNYPVVQSDVAFKVLNELNDGISRTRRLNLKNPQDSLLGQIPR 522
Query: 619 RTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSDF 443
T+DE+M HW +IQELLRHFWSSYPITT+ LYNKV R+K AM IYQKL+ IK+ Q D
Sbjct: 523 HTRDELMDHWTAIQELLRHFWSSYPITTSVLYNKVQRIKDAMTQIYQKLQNIKESAQPDV 582
Query: 442 RHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGF 323
RH+IS L++PM Q+LDAAF H + E+ + S+K+G KPNGF
Sbjct: 583 RHEISQLVKPMTQALDAAFNH-ELEQQQKSSKSGNKPNGF 621
>ref|XP_006307068.1| hypothetical protein CARUB_v10008654mg [Capsella rubella]
gi|482575779|gb|EOA39966.1| hypothetical protein
CARUB_v10008654mg [Capsella rubella]
Length = 593
Score = 182 bits (462), Expect = 1e-43
Identities = 87/163 (53%), Positives = 126/163 (77%), Gaps = 3/163 (1%)
Frame = -3
Query: 799 DAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFPK 620
+A+ L + I E++ +G+ +P+++ + + +V + LT+ IS+ + +GKNP+ES LDR PK
Sbjct: 431 EAFGLLKESIVEIRARGLSDPLIKPEVSFEVFSSLTRTISTAKNIIGKNPRESFLDRLPK 490
Query: 619 RTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSDF 443
TKDE++ HW SIQELLRHFWSSYPITT YL+ KV +LK AM++ Y KL+A+K+ VQSD
Sbjct: 491 STKDEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDL 550
Query: 442 RHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKN--GAKPNGFV 320
RHQISLL++PM Q+LDAAF HY+A+ + +AK+ G +PNG+V
Sbjct: 551 RHQISLLVRPMQQALDAAFQHYEADLQRRTAKSSGGERPNGYV 593
>ref|NP_175971.3| probable RNA polymerase II transcription factor B subunit 1-1
[Arabidopsis thaliana]
gi|122215373|sp|Q3ECP0.1|TFB1A_ARATH RecName:
Full=Probable RNA polymerase II transcription factor B
subunit 1-1; AltName: Full=General transcription and DNA
repair factor IIH subunit TFB1-1; Short=AtTFB1-1;
Short=TFIIH subunit TFB1-1 gi|110741140|dbj|BAE98663.1|
hypothetical protein [Arabidopsis thaliana]
gi|332195172|gb|AEE33293.1| probable RNA polymerase II
transcription factor B subunit 1-1 [Arabidopsis
thaliana]
Length = 591
Score = 181 bits (460), Expect = 2e-43
Identities = 84/161 (52%), Positives = 123/161 (76%), Gaps = 1/161 (0%)
Frame = -3
Query: 799 DAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFPK 620
+AY L + I E++ G+ +P+++ + + +V + LT+ I++ + GKNP+ES LDR PK
Sbjct: 431 EAYGLLKESILEIRATGLSDPLIKPEVSFEVFSSLTRTIATAKNINGKNPRESFLDRLPK 490
Query: 619 RTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSDF 443
TKDE++ HW SIQELL+HFWSSYPITT YL+ KV +LK AM++ Y KL+A+K+ VQSD
Sbjct: 491 STKDEVLHHWTSIQELLKHFWSSYPITTTYLHTKVGKLKDAMSNTYSKLEAMKESVQSDL 550
Query: 442 RHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGFV 320
RHQ+SLL++PM Q+LDAAF HY+ + + +AK+G +PNG+V
Sbjct: 551 RHQVSLLVRPMQQALDAAFHHYEVDLQRRTAKSGERPNGYV 591
>ref|XP_003573495.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1-like [Brachypodium distachyon]
Length = 602
Score = 181 bits (459), Expect = 3e-43
Identities = 94/161 (58%), Positives = 119/161 (73%), Gaps = 1/161 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
+DA+ +L+ QIS VK+ + PVVQS+ ALKVL L + IS +R KNPQ+S+L R P
Sbjct: 443 DDAFRHLMDQISSVKVNKLSCPVVQSNVALKVLNELNEGISRSRRLNLKNPQDSLLGRLP 502
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
RT+DE+M HW +IQELLRHFWSSYPITT LYNK+ R+K AM IYQKL+ IK+ Q D
Sbjct: 503 HRTRDELMDHWTAIQELLRHFWSSYPITTTVLYNKIQRVKDAMTQIYQKLQDIKESAQPD 562
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGF 323
RH+IS L++PM Q+LDAAF H D E+ + S+K G KPNGF
Sbjct: 563 VRHEISQLVKPMTQALDAAFNH-DLEQQQKSSKTGNKPNGF 602
>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
Length = 735
Score = 179 bits (454), Expect = 1e-42
Identities = 90/134 (67%), Positives = 108/134 (80%), Gaps = 1/134 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
++AY L ISE+K G+ +P+V+ D ALKVL GLTQ ISST+++LGKNPQESVLDR P
Sbjct: 484 QEAYGSLRGFISEIKSVGLSDPIVKPDIALKVLNGLTQNISSTKFHLGKNPQESVLDRLP 543
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
TK+E++ HW SIQELLRHFWSSYPITT YLY K RLK AM+ IY KL+ IK+ VQSD
Sbjct: 544 IITKEELLHHWTSIQELLRHFWSSYPITTTYLYTKASRLKDAMSQIYPKLQEIKESVQSD 603
Query: 445 FRHQISLLIQPMLQ 404
FRHQ+SLL+QPMLQ
Sbjct: 604 FRHQVSLLVQPMLQ 617
>dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 177 bits (448), Expect = 5e-42
Identities = 95/161 (59%), Positives = 120/161 (74%), Gaps = 1/161 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
+DA+ +L+ QIS VK+ + PVVQSD ALKVL L + IS +R KNPQ+S+L R P
Sbjct: 440 DDAFRHLMDQISSVKM---NCPVVQSDVALKVLNELNEGISRSRRLNLKNPQDSLLGRLP 496
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
RT+DE+M HWM+IQELLRHFWSSYPITT L NKV RLK AM IYQKL+ IK+ Q D
Sbjct: 497 HRTRDELMDHWMAIQELLRHFWSSYPITTTVLCNKVQRLKEAMTQIYQKLQDIKESAQPD 556
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGF 323
RH+IS L++PM Q+LDAAF H + ++ + S+K G+KPNGF
Sbjct: 557 VRHEISQLVKPMTQALDAAFNH-EHDQQQKSSKAGSKPNGF 596
>ref|XP_006392607.1| hypothetical protein EUTSA_v10011333mg [Eutrema salsugineum]
gi|557089185|gb|ESQ29893.1| hypothetical protein
EUTSA_v10011333mg [Eutrema salsugineum]
Length = 597
Score = 175 bits (444), Expect = 1e-41
Identities = 86/166 (51%), Positives = 121/166 (72%), Gaps = 6/166 (3%)
Frame = -3
Query: 799 DAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFPK 620
+AY L + I E++ +G+ P+++S+ + +V + LTQ IS+ + +GKNP+ES LDR PK
Sbjct: 432 EAYGLLKESILEIRTKGLSYPLIKSEVSFEVFSSLTQTISTAKNIIGKNPRESFLDRLPK 491
Query: 619 RTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIK-DVQSDF 443
TKDE++ HW SIQELLRHFWSSYPITT YL+ KV +LK AM++ Y +L A+K VQSD
Sbjct: 492 STKDEVLHHWTSIQELLRHFWSSYPITTTYLHTKVGKLKDAMSNTYSQLDAMKQSVQSDL 551
Query: 442 RHQISLLIQPMLQSLDAAFAHYDAEEHKHSAK-----NGAKPNGFV 320
RHQ+SLL++PM Q+LDAAF HY+ + + +AK + +PNG V
Sbjct: 552 RHQVSLLVRPMQQALDAAFQHYETDLQRRTAKSVGGSSSERPNGGV 597
>ref|XP_002443866.1| hypothetical protein SORBIDRAFT_07g003540 [Sorghum bicolor]
gi|241940216|gb|EES13361.1| hypothetical protein
SORBIDRAFT_07g003540 [Sorghum bicolor]
Length = 600
Score = 175 bits (444), Expect = 1e-41
Identities = 88/161 (54%), Positives = 120/161 (74%), Gaps = 1/161 (0%)
Frame = -3
Query: 802 EDAYYYLLQQISEVKLQGVHNPVVQSDTALKVLTGLTQQISSTRYNLGKNPQESVLDRFP 623
E+A+++L+ Q+S +K+ ++ P++QSD ALKVL L + IS +R KNPQE +L + P
Sbjct: 441 EEAFHHLMDQMSSIKVNKLNCPIIQSDMALKVLNELNEGISRSRRLNLKNPQEGLLGQLP 500
Query: 622 KRTKDEIMLHWMSIQELLRHFWSSYPITTAYLYNKVLRLKSAMADIYQKLKAIKD-VQSD 446
+ T+DE+M HW +IQELLRHFWSSYPIT+A LYNKV R+K AM IYQKL+ IK+ Q D
Sbjct: 501 QHTRDELMDHWTAIQELLRHFWSSYPITSAVLYNKVQRVKEAMTQIYQKLQLIKESAQPD 560
Query: 445 FRHQISLLIQPMLQSLDAAFAHYDAEEHKHSAKNGAKPNGF 323
RH+IS L++PM Q+LDAAF H D E+ + S+K G + NGF
Sbjct: 561 VRHEISRLVKPMTQALDAAFNH-DLEQQQKSSKTGNRHNGF 600