BLASTX nr result
ID: Zingiber25_contig00030731
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00030731
(457 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAK06737.1| predicted protein [Hordeum vulgare subsp. vulgare] 124 2e-26
ref|XP_004982736.1| PREDICTED: LOW QUALITY PROTEIN: probable DNA... 120 2e-25
ref|XP_003574126.1| PREDICTED: DNA-directed RNA polymerase I sub... 112 7e-23
ref|XP_004163996.1| PREDICTED: probable DNA-directed RNA polymer... 105 8e-21
ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I sub... 105 8e-21
ref|XP_004229596.1| PREDICTED: DNA-directed RNA polymerase I sub... 102 5e-20
ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I sub... 102 7e-20
ref|XP_006366498.1| PREDICTED: probable DNA-directed RNA polymer... 102 7e-20
ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I sub... 102 7e-20
ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymer... 101 9e-20
gb|ESW05690.1| hypothetical protein PHAVU_011G201300g [Phaseolus... 100 3e-19
ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymer... 98 1e-18
gb|EOY19647.1| Nuclear RNA polymerase A2 isoform 2 [Theobroma ca... 94 2e-17
ref|XP_006464288.1| PREDICTED: probable DNA-directed RNA polymer... 89 8e-16
ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymer... 89 8e-16
ref|XP_001773955.1| predicted protein [Physcomitrella patens] gi... 88 1e-15
tpg|DAA49470.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea m... 85 9e-15
tpg|DAA49469.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea m... 85 9e-15
ref|NP_564341.2| nuclear RNA polymerase A2 [Arabidopsis thaliana... 85 1e-14
emb|CAN62043.1| hypothetical protein VITISV_038847 [Vitis vinifera] 81 1e-13
>dbj|BAK06737.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 978
Score = 124 bits (310), Expect = 2e-26
Identities = 56/94 (59%), Positives = 69/94 (73%)
Frame = -2
Query: 288 DYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPPTKD 109
DY LR+L+RPH+ESFDYFLDEGL K+ +IRP+EI + LR+SLE VLPP KD
Sbjct: 20 DYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMEITHPSSNTTLRMSLEKGHVLPPMKD 79
Query: 108 GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDG 7
GRL +PLYP ECRQ R +Y G+FK FQ++DG
Sbjct: 80 GRLGQPLYPQECRQGRISYSGEFKVEAVFQFNDG 113
>ref|XP_004982736.1| PREDICTED: LOW QUALITY PROTEIN: probable DNA-directed RNA
polymerase I subunit RPA2-like [Setaria italica]
Length = 1172
Score = 120 bits (301), Expect = 2e-25
Identities = 62/112 (55%), Positives = 77/112 (68%)
Frame = -2
Query: 345 DLGAKSATPVLIMGSKSKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVT 166
D AKSA+P + DY AL++LFRPHVESFD FLD GL ++ IRP+EI D +
Sbjct: 2 DTAAKSASP-------AGADYAALKELFRPHVESFDSFLDVGLDEMLRGIRPMEIKDPNS 54
Query: 165 GVKLRISLEGPQVLPPTKDGRLNEPLYPHECRQARTTYKGDFKALLCFQYDD 10
L+I+LE QVLPP +DGRL PLYP ECRQARTTY G+FK +C Q ++
Sbjct: 55 SAILKITLEKGQVLPPMRDGRLGVPLYPQECRQARTTYHGEFKVDVCLQCNE 106
>ref|XP_003574126.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2 [Brachypodium
distachyon]
Length = 1181
Score = 112 bits (279), Expect = 7e-23
Identities = 51/94 (54%), Positives = 69/94 (73%)
Frame = -2
Query: 288 DYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPPTKD 109
+Y LR+L+RPH+ESFDYFLDEGL K+ +IRP++I + LRISLE +LPP +D
Sbjct: 19 EYATLRELYRPHIESFDYFLDEGLDKMLLSIRPMDISHPSSSDTLRISLEKGHLLPPLRD 78
Query: 108 GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDG 7
R+ +PLYP ECRQAR +Y G+FK FQ+++G
Sbjct: 79 VRMAKPLYPQECRQARISYSGEFKVDTLFQFNNG 112
>ref|XP_004163996.1| PREDICTED: probable DNA-directed RNA polymerase I subunit
RPA2-like, partial [Cucumis sativus]
Length = 948
Score = 105 bits (261), Expect = 8e-21
Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
Frame = -2
Query: 315 LIMGSKSKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEG 136
+++ DYEALR+LFR H+ESFD+ +D GL+ + +I+PVEI D T KLRI L
Sbjct: 1 MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60
Query: 135 PQVLPPTKDGRL---NEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
P++ PP K+ L E L P+ECRQA+ +Y G F A +CFQYD+ +
Sbjct: 61 PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAV 108
>ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
sativus]
Length = 1173
Score = 105 bits (261), Expect = 8e-21
Identities = 51/108 (47%), Positives = 71/108 (65%), Gaps = 3/108 (2%)
Frame = -2
Query: 315 LIMGSKSKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEG 136
+++ DYEALR+LFR H+ESFD+ +D GL+ + +I+PVEI D T KLRI L
Sbjct: 1 MVVKFNENEDYEALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGK 60
Query: 135 PQVLPPTKDGRL---NEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
P++ PP K+ L E L P+ECRQA+ +Y G F A +CFQYD+ +
Sbjct: 61 PELYPPQKERNLRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAV 108
>ref|XP_004229596.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Solanum
lycopersicum]
Length = 1184
Score = 102 bits (254), Expect = 5e-20
Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Frame = -2
Query: 297 SKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPP 118
++ DY AL++LF H+ESFDY +D GL+ + I+P+EIVD + +KLRI P++ PP
Sbjct: 21 AEKDYSALKELFSHHIESFDYMVDNGLETMLLNIKPIEIVDSFSSLKLRIWFGKPELFPP 80
Query: 117 TKD---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
K+ +++ LYP ECRQA+ +Y G F +CFQY DG +
Sbjct: 81 QKERASKAMHDALYPFECRQAKISYSGKFLVDICFQYGDGAV 122
>ref|XP_006594369.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
X2 [Glycine max]
Length = 1151
Score = 102 bits (253), Expect = 7e-20
Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Frame = -2
Query: 297 SKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPP 118
S PD+EALR+LF+ H+ESFDY +D GL + I+PVE+ D T KLRI L+ P + PP
Sbjct: 7 SVPDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPP 66
Query: 117 TKD---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
K+ + E L P ECRQA+ +Y G +CFQY+DG I
Sbjct: 67 QKERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPI 108
>ref|XP_006366498.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
[Solanum tuberosum]
Length = 1179
Score = 102 bits (253), Expect = 7e-20
Identities = 46/102 (45%), Positives = 68/102 (66%), Gaps = 3/102 (2%)
Frame = -2
Query: 297 SKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPP 118
++ DY AL++LF H+ESFDY +D GL+ + I+P+EIVD + +KLRI P++ PP
Sbjct: 16 AEKDYSALKELFSHHIESFDYMVDNGLETMLLNIKPIEIVDSFSSLKLRIWFGKPELFPP 75
Query: 117 TKD---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
K+ +++ LYP ECRQA+ +Y G F +CFQY DG +
Sbjct: 76 QKERASKTMHDALYPFECRQAKLSYTGKFLVDICFQYGDGAV 117
>ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like isoform
X1 [Glycine max]
Length = 1175
Score = 102 bits (253), Expect = 7e-20
Identities = 50/102 (49%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Frame = -2
Query: 297 SKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPP 118
S PD+EALR+LF+ H+ESFDY +D GL + I+PVE+ D T KLRI L+ P + PP
Sbjct: 7 SVPDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPP 66
Query: 117 TKD---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
K+ + E L P ECRQA+ +Y G +CFQY+DG I
Sbjct: 67 QKERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPI 108
>ref|XP_003550091.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X1 [Glycine max]
Length = 1175
Score = 101 bits (252), Expect = 9e-20
Identities = 49/108 (45%), Positives = 69/108 (63%), Gaps = 3/108 (2%)
Frame = -2
Query: 315 LIMGSKSKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEG 136
+++ S PD+EALR+LF+ H+ESFDY D GL+ + I+P+E+ D T KLRI L+
Sbjct: 1 MVVKQGSIPDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDN 60
Query: 135 PQVLPPTKD---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
P + PP K+ + E L P ECRQA+ +Y G +CFQY+DG I
Sbjct: 61 PVLYPPQKERISRTMREALLPFECRQAKISYAGKITIDVCFQYNDGPI 108
>gb|ESW05690.1| hypothetical protein PHAVU_011G201300g [Phaseolus vulgaris]
Length = 1180
Score = 99.8 bits (247), Expect = 3e-19
Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 3/102 (2%)
Frame = -2
Query: 297 SKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPP 118
S PD+EALR+LF+ H+ESFD+ + GL+ I+P+E++D T KLRI LE P V PP
Sbjct: 7 SVPDFEALRELFKHHIESFDHMVKAGLETTLLHIKPIEVLDDFTTTKLRIWLENPVVYPP 66
Query: 117 TKD---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
K+ + E L P ECRQA+ +Y G +CFQY+DG +
Sbjct: 67 QKERISKTMREALLPFECRQAKISYAGKITIDVCFQYNDGPV 108
>ref|XP_004486057.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X1 [Cicer arietinum]
gi|502078798|ref|XP_004486058.1| PREDICTED: probable
DNA-directed RNA polymerase I subunit RPA2-like isoform
X2 [Cicer arietinum]
Length = 1177
Score = 98.2 bits (243), Expect = 1e-18
Identities = 44/99 (44%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Frame = -2
Query: 288 DYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPPTKD 109
+++ALRDL +PH+ESFD+ +D GL+ +F I+P+E+ L+IS++ P++ P K+
Sbjct: 16 NFDALRDLLKPHIESFDHMIDAGLKTMFIGIKPLEVPHPTQPTTLKISMDNPKIFEPQKE 75
Query: 108 ---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
+ LYP ECRQA+ +Y G F A LCFQYD+G I
Sbjct: 76 RGFSKSRNILYPFECRQAKISYTGTFTAELCFQYDNGPI 114
>gb|EOY19647.1| Nuclear RNA polymerase A2 isoform 2 [Theobroma cacao]
Length = 1180
Score = 93.6 bits (231), Expect = 2e-17
Identities = 45/99 (45%), Positives = 63/99 (63%), Gaps = 3/99 (3%)
Frame = -2
Query: 288 DYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPPTKD 109
+ E L++LF+ H+ESFDY +DEGL + ++PV+I D + LRI L+ P+V PP KD
Sbjct: 17 ELEELKELFKHHIESFDYMIDEGLDLMLKRVKPVQIFDSSSNKTLRIWLDHPEVYPPQKD 76
Query: 108 GRLNE---PLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
LYP ECRQA+ +Y G F +CFQ+D GV+
Sbjct: 77 RSSKTSAGALYPFECRQAKISYTGSFHIDVCFQWDGGVV 115
>ref|XP_006464288.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X2 [Citrus sinensis]
Length = 954
Score = 88.6 bits (218), Expect = 8e-16
Identities = 45/103 (43%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Frame = -2
Query: 309 MGSKSKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQ 130
M K D+E LR+L R H+ESFDY LDEGL ++F ++ V + D T +L+IS+ P+
Sbjct: 1 MARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHVKTVFVHDSFTNKRLKISVGNPE 60
Query: 129 VLPPTKD---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDD 10
+ PP K+ L + L P ECRQA+ +Y G A + FQY D
Sbjct: 61 IFPPQKEQGSKTLRDALLPFECRQAKISYTGKLMADVEFQYLD 103
>ref|XP_006464287.1| PREDICTED: probable DNA-directed RNA polymerase I subunit RPA2-like
isoform X1 [Citrus sinensis]
Length = 1175
Score = 88.6 bits (218), Expect = 8e-16
Identities = 45/103 (43%), Positives = 63/103 (61%), Gaps = 3/103 (2%)
Frame = -2
Query: 309 MGSKSKPDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQ 130
M K D+E LR+L R H+ESFDY LDEGL ++F ++ V + D T +L+IS+ P+
Sbjct: 1 MARKKSADFEPLRELVRHHIESFDYMLDEGLSEMFDHVKTVFVHDSFTNKRLKISVGNPE 60
Query: 129 VLPPTKD---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDD 10
+ PP K+ L + L P ECRQA+ +Y G A + FQY D
Sbjct: 61 IFPPQKEQGSKTLRDALLPFECRQAKISYTGKLMADVEFQYLD 103
>ref|XP_001773955.1| predicted protein [Physcomitrella patens]
gi|162674799|gb|EDQ61303.1| predicted protein
[Physcomitrella patens]
Length = 1199
Score = 87.8 bits (216), Expect = 1e-15
Identities = 42/99 (42%), Positives = 64/99 (64%), Gaps = 3/99 (3%)
Frame = -2
Query: 288 DYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPPTKD 109
D +L DL +PH ESFDYF++ GL++ ++P+E+ ++G LR+ +E P V PP KD
Sbjct: 38 DCSSLYDLTKPHTESFDYFVERGLEEAVRRLQPIELKHPISGTSLRLWVEKPNVSPPMKD 97
Query: 108 ---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
L++ L P ECR A TY+G F A +C Q+++GV+
Sbjct: 98 LGSQALDQRLLPSECRLAGLTYRGIFTADICMQWNNGVV 136
>tpg|DAA49470.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea mays]
Length = 1162
Score = 85.1 bits (209), Expect = 9e-15
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -2
Query: 288 DYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPV-EIVDRVTGVKLRISLEGPQVLPPTK 112
DY ALR+LFRPHVESFDYFLD+GL ++ +IRP+ ++ + G + P VL
Sbjct: 17 DYSALRELFRPHVESFDYFLDKGLDEMIESIRPMGHVLSPMRGAR-------PGVL---- 65
Query: 111 DGRLNEPLYPHE-CRQARTTYKGDFKALLCFQYDDG 7
P+YP E CRQAR +Y G+FK +CFQY++G
Sbjct: 66 ------PIYPQEQCRQARISYHGEFKVEVCFQYNEG 95
>tpg|DAA49469.1| TPA: hypothetical protein ZEAMMB73_824600 [Zea mays]
Length = 1128
Score = 85.1 bits (209), Expect = 9e-15
Identities = 46/96 (47%), Positives = 62/96 (64%), Gaps = 2/96 (2%)
Frame = -2
Query: 288 DYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPV-EIVDRVTGVKLRISLEGPQVLPPTK 112
DY ALR+LFRPHVESFDYFLD+GL ++ +IRP+ ++ + G + P VL
Sbjct: 17 DYSALRELFRPHVESFDYFLDKGLDEMIESIRPMGHVLSPMRGAR-------PGVL---- 65
Query: 111 DGRLNEPLYPHE-CRQARTTYKGDFKALLCFQYDDG 7
P+YP E CRQAR +Y G+FK +CFQY++G
Sbjct: 66 ------PIYPQEQCRQARISYHGEFKVEVCFQYNEG 95
>ref|NP_564341.2| nuclear RNA polymerase A2 [Arabidopsis thaliana]
gi|332193031|gb|AEE31152.1| nuclear RNA polymerase A2
[Arabidopsis thaliana]
Length = 1178
Score = 84.7 bits (208), Expect = 1e-14
Identities = 44/100 (44%), Positives = 60/100 (60%), Gaps = 4/100 (4%)
Frame = -2
Query: 288 DYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVEIVDRVTGVKLRISLEGPQVLPPTKD 109
D++ L +L H+ESFDY +GL +F I+PV + D T +L I LE P V P K+
Sbjct: 15 DFKELHNLVTHHIESFDYMTLKGLDVMFNRIKPVSVYDPNTENELSIWLENPLVFAPQKE 74
Query: 108 G----RLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
EPL P ECRQA+ +Y G F A +CF+Y+DGV+
Sbjct: 75 SFKSTSRKEPLLPFECRQAKISYTGTFMADVCFKYNDGVV 114
>emb|CAN62043.1| hypothetical protein VITISV_038847 [Vitis vinifera]
Length = 416
Score = 81.3 bits (199), Expect = 1e-13
Identities = 42/105 (40%), Positives = 65/105 (61%), Gaps = 8/105 (7%)
Frame = -2
Query: 291 PDYEALRDLFRPHVESFDYFLDEGLQKIFFAIRPVE---IVDRVTGVKLRISL--EGPQV 127
PDYE LR+LF+ H++SFD+ ++ GL+ + +++PVE I RI+L P++
Sbjct: 6 PDYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVESLFITHNGVFFLTRIALWFGQPEL 65
Query: 126 LPPTKD---GRLNEPLYPHECRQARTTYKGDFKALLCFQYDDGVI 1
PP K+ + + LYP ECRQA+ +Y G A +CFQY +GV+
Sbjct: 66 YPPQKERSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVV 110