BLASTX nr result
ID: Zingiber25_contig00029332
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00029332
(310 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA73042.1| polyprotein [Ananas comosus] 100 2e-19
emb|CAD39395.2| OSJNBb0089K24.5 [Oryza sativa Japonica Group] 92 5e-17
gb|AAT38724.1| Putative retrotransposon protein, identical [Sola... 92 7e-17
gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum ... 92 7e-17
gb|ADB85337.1| putative retrotransposon protein [Phyllostachys e... 92 9e-17
gb|ABC94893.1| polyprotein [Oryza australiensis] 92 9e-17
gb|AAD22158.1|AF061282_11 polyprotein [Sorghum bicolor] 92 9e-17
gb|AAL59229.1|AF448416_9 gag-pol [Zea mays] 92 9e-17
gb|AAM08845.1|AC113337_9 Putative retroelement [Oryza sativa Jap... 91 2e-16
gb|ADB85355.1| putative retrotransposon protein [Phyllostachys e... 91 2e-16
gb|AAP52358.2| retrotransposon protein, putative, Ty3-gypsy subc... 91 2e-16
gb|AAL77157.1|AC091732_8 Putative polyprotein [Oryza sativa Japo... 90 3e-16
gb|ADB85273.1| putative retrotransposon protein [Phyllostachys e... 90 4e-16
gb|AAS90688.2| putative polyprotein [Oryza sativa Japonica Group] 89 5e-16
gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subc... 89 5e-16
gb|AAX95493.1| Retrotransposon gag protein, putative [Oryza sati... 89 5e-16
gb|AAX92776.1| retrotransposon protein, putative, Ty3-gypsy sub-... 89 5e-16
gb|ABB47436.2| retrotransposon protein, putative, Ty3-gypsy subc... 89 5e-16
gb|AAV31367.1| putative polyprotein [Oryza sativa Japonica Group] 89 5e-16
gb|AAT85771.1| hypothetical protein [Oryza sativa Japonica Group... 89 5e-16
>emb|CAA73042.1| polyprotein [Ananas comosus]
Length = 871
Score = 100 bits (249), Expect = 2e-19
Identities = 44/93 (47%), Positives = 65/93 (69%)
Frame = -3
Query: 281 LVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQSHP 102
L+T+V Q ++ RI+E QA D LQ I ++ G +FT D +G++ FRGR+CVP
Sbjct: 463 LMTLVVQPTLLDRIKEKQASDVELQKIKGKMVDGCTGDFTLDGDGLMRFRGRICVPADSG 522
Query: 101 VLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ +++LQEAHR+ +AIHPG T+MY+DL+ YWW
Sbjct: 523 IKEDILQEAHRAPYAIHPGGTKMYKDLKLLYWW 555
>emb|CAD39395.2| OSJNBb0089K24.5 [Oryza sativa Japonica Group]
Length = 1365
Score = 92.4 bits (228), Expect = 5e-17
Identities = 41/100 (41%), Positives = 60/100 (60%)
Frame = -3
Query: 302 GSTEQGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRL 123
G G + T+ A+ + IREAQ GD +Q I + G+ F+ DE G I++ R
Sbjct: 930 GIVSYGYVATLEAKPLLLDHIREAQKGDSDIQEIKKNMRRGKAIGFSEDEHGTIWYGERA 989
Query: 122 CVPQSHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
CVP + + +LQEAH S+++IHPG T+MY+DL+ YWW
Sbjct: 990 CVPNDPEIKKLILQEAHESQYSIHPGSTKMYQDLKMKYWW 1029
>gb|AAT38724.1| Putative retrotransposon protein, identical [Solanum demissum]
Length = 1602
Score = 92.0 bits (227), Expect = 7e-17
Identities = 40/99 (40%), Positives = 64/99 (64%)
Frame = -3
Query: 299 STEQGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLC 120
STE GI VT A+SS+ + ++E Q D L + + + + F + +G++ ++GRLC
Sbjct: 1107 STEGGIAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLC 1166
Query: 119 VPQSHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
VP + + +++EAH SR+++HPG T+MYRDLR YWW
Sbjct: 1167 VPMVDGLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWW 1205
>gb|AAT38744.1| Putative gag-pol polyprotein, identical [Solanum demissum]
Length = 1515
Score = 92.0 bits (227), Expect = 7e-17
Identities = 40/99 (40%), Positives = 64/99 (64%)
Frame = -3
Query: 299 STEQGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLC 120
STE GI VT A+SS+ + ++E Q D L + + + + F + +G++ ++GRLC
Sbjct: 1101 STEGGIAVTSKAESSLMSEVKEKQDQDPILLELKANVQKQRVLAFEQGGDGVLRYQGRLC 1160
Query: 119 VPQSHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
VP + + +++EAH SR+++HPG T+MYRDLR YWW
Sbjct: 1161 VPMVDGLQERVMEEAHSSRYSVHPGSTKMYRDLREFYWW 1199
>gb|ADB85337.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1053
Score = 91.7 bits (226), Expect = 9e-17
Identities = 37/96 (38%), Positives = 62/96 (64%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
QG + + Q +++++IRE Q D+ ++ I + G+ F+ DE+G ++F R+CVP
Sbjct: 564 QGCVNALEVQPTLQSQIREKQLEDEDIKEIKKNMRRGKAPGFSEDEQGTVWFGNRICVPN 623
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ Q +L+EAH S ++IHPG T+MY+DL+ YWW
Sbjct: 624 QQELKQSILKEAHESPYSIHPGSTKMYQDLKEKYWW 659
>gb|ABC94893.1| polyprotein [Oryza australiensis]
Length = 1469
Score = 91.7 bits (226), Expect = 9e-17
Identities = 36/84 (42%), Positives = 63/84 (75%)
Frame = -3
Query: 254 IRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQSHPVLQELLQEA 75
+RT+I EAQ G++ Q I ++A+G+ EF+ D++GI++++ R+CVP+ + + +L+EA
Sbjct: 993 LRTQIEEAQRGNEETQEIKERMAAGRAQEFSVDDKGILWYKKRICVPERGGLRELILKEA 1052
Query: 74 HRSRFAIHPGETRMYRDLRRSYWW 3
H S +++HPG T+MY+DL+ YWW
Sbjct: 1053 HESAYSLHPGSTKMYQDLKGEYWW 1076
>gb|AAD22158.1|AF061282_11 polyprotein [Sorghum bicolor]
Length = 924
Score = 91.7 bits (226), Expect = 9e-17
Identities = 40/96 (41%), Positives = 59/96 (61%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G+L + Q + RIR AQ G +Q + ++ G+ EF DE G + + R+CVP
Sbjct: 433 KGLLSELRIQYDLEDRIRRAQRGCPEIQEVHERMEGGKCPEFRVDERGTYWCKNRICVPS 492
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
P+ +E+L EAH SR+ IHPG T+MY DLR+ +WW
Sbjct: 493 DEPLREEILSEAHDSRYCIHPGSTKMYADLRKVFWW 528
>gb|AAL59229.1|AF448416_9 gag-pol [Zea mays]
Length = 1470
Score = 91.7 bits (226), Expect = 9e-17
Identities = 38/90 (42%), Positives = 61/90 (67%)
Frame = -3
Query: 272 MVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQSHPVLQ 93
M +S++ IR+ Q D+ ++ I + I G+ +FT DE+G I+F+ R+CVP+ + Q
Sbjct: 987 MEVESTLEEEIRKGQESDEKIKEIKALIGLGKAPDFTEDEQGTIWFKKRICVPEIEHLRQ 1046
Query: 92 ELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+L+EAH S ++IHPG T+MY+DL+ YWW
Sbjct: 1047 LILREAHDSAYSIHPGSTKMYQDLKEKYWW 1076
>gb|AAM08845.1|AC113337_9 Putative retroelement [Oryza sativa Japonica Group]
Length = 1728
Score = 90.5 bits (223), Expect = 2e-16
Identities = 39/96 (40%), Positives = 61/96 (63%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L + A+ ++ +IREAQ D ++ + + G+ T FT DE G ++ R+CVP
Sbjct: 1308 RGFLAALEAKPTLLDQIREAQKNDPDMRGLLKNMKQGKATGFTEDEHGTLWNGNRVCVPD 1367
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ + Q +LQEAH S ++IHPG T+MY DL++ YWW
Sbjct: 1368 NRELKQLILQEAHESPYSIHPGSTKMYLDLKKKYWW 1403
>gb|ADB85355.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 1112
Score = 90.5 bits (223), Expect = 2e-16
Identities = 37/96 (38%), Positives = 63/96 (65%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G + + QS++ +IREAQ D I ++A G+ +FT D++ I++ GR+CVP
Sbjct: 658 EGFVANLEVQSTLEKQIREAQPKDYEFSNIKKKMAEGKFKDFTVDDQDILWINGRICVPD 717
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ Q +L+EAH S+++IHPG T+MY+D++ +WW
Sbjct: 718 IDGLRQLILKEAHDSKYSIHPGSTKMYQDVKNKFWW 753
>gb|AAP52358.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1707
Score = 90.5 bits (223), Expect = 2e-16
Identities = 39/96 (40%), Positives = 61/96 (63%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L + A+ ++ +IREAQ D ++ + + G+ T FT DE G ++ R+CVP
Sbjct: 1287 RGFLAALEAKPTLLDQIREAQKNDPDMRGLLKNMKQGKATGFTEDEHGTLWNGNRVCVPD 1346
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ + Q +LQEAH S ++IHPG T+MY DL++ YWW
Sbjct: 1347 NRELKQLILQEAHESPYSIHPGSTKMYLDLKKKYWW 1382
>gb|AAL77157.1|AC091732_8 Putative polyprotein [Oryza sativa Japonica Group]
gi|31431769|gb|AAP53495.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1839
Score = 90.1 bits (222), Expect = 3e-16
Identities = 39/96 (40%), Positives = 59/96 (61%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L T+ A+ ++ +IREAQ D + + + G+ FT DE G ++ R+CVP
Sbjct: 1342 RGFLATLEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAASFTEDEHGTLWNGNRVCVPD 1401
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ + Q +LQEAH S ++IHPG T+MY DL+ YWW
Sbjct: 1402 NRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWW 1437
>gb|ADB85273.1| putative retrotransposon protein [Phyllostachys edulis]
Length = 897
Score = 89.7 bits (221), Expect = 4e-16
Identities = 39/96 (40%), Positives = 60/96 (62%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
Q + + + +++ +IRE QA D+ LQ I + + F+ DEEGI++F RLCVP
Sbjct: 397 QDCVYALEVEPTVQRQIRENQATDKDLQEIKDNLKREKAPGFSEDEEGILWFGNRLCVPD 456
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ Q LL+E H S ++IHPG T+MY++L+ YWW
Sbjct: 457 CQAIKQLLLKETHESHYSIHPGSTKMYQELKEMYWW 492
>gb|AAS90688.2| putative polyprotein [Oryza sativa Japonica Group]
Length = 1789
Score = 89.4 bits (220), Expect = 5e-16
Identities = 39/96 (40%), Positives = 59/96 (61%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L T+ A+ ++ +IREAQ D + + + G+ FT DE G ++ R+CVP
Sbjct: 1292 RGFLTTLEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPD 1351
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ + Q +LQEAH S ++IHPG T+MY DL+ YWW
Sbjct: 1352 NRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWW 1387
>gb|ABA98372.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1800
Score = 89.4 bits (220), Expect = 5e-16
Identities = 39/96 (40%), Positives = 59/96 (61%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L + A+S++ +IREAQ D + + + G+ FT DE G ++ R+CVP
Sbjct: 1303 RGFLAALEAKSTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPD 1362
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ + Q +LQEAH S ++IHPG T+MY DL+ YWW
Sbjct: 1363 NRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWW 1398
>gb|AAX95493.1| Retrotransposon gag protein, putative [Oryza sativa Japonica Group]
gi|62734610|gb|AAX96719.1| retrotransposon protein,
putative, Ty3-gypsy sub-class [Oryza sativa Japonica
Group] gi|77550245|gb|ABA93042.1| retrotransposon
protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1497
Score = 89.4 bits (220), Expect = 5e-16
Identities = 40/96 (41%), Positives = 59/96 (61%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L T+ A+ ++ +IREAQ D + + + G+ FT DE GI++ R+CVP
Sbjct: 1056 RGFLATLEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGILWNGNRVCVPD 1115
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ Q +LQEAH S ++IHPG T+MY DL+ YWW
Sbjct: 1116 DRELKQLILQEAHESPYSIHPGCTKMYLDLKEKYWW 1151
>gb|AAX92776.1| retrotransposon protein, putative, Ty3-gypsy sub-class [Oryza sativa
Japonica Group] gi|77550523|gb|ABA93320.1|
retrotransposon protein, putative, Ty3-gypsy subclass
[Oryza sativa Japonica Group]
Length = 1429
Score = 89.4 bits (220), Expect = 5e-16
Identities = 40/96 (41%), Positives = 58/96 (60%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L T+ A+ ++ +IREAQ D + I + G+ FT DE G ++ R+CVP
Sbjct: 933 RGFLATLEAKPTLLDQIREAQKNDPDMHGILKNMKQGKAAGFTEDEHGTLWNGNRVCVPD 992
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ Q +LQEAH S ++IHPG T+MY DL+ YWW
Sbjct: 993 DKELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWW 1028
>gb|ABB47436.2| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
Japonica Group]
Length = 1504
Score = 89.4 bits (220), Expect = 5e-16
Identities = 39/96 (40%), Positives = 59/96 (61%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L T+ A+ ++ +IREAQ D + + + G+ FT DE G ++ R+CVP
Sbjct: 1007 RGFLATLEAKPTLLDQIREAQKNDPDMHGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPD 1066
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ + Q +LQEAH S ++IHPG T+MY DL+ YWW
Sbjct: 1067 NRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWW 1102
>gb|AAV31367.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1611
Score = 89.4 bits (220), Expect = 5e-16
Identities = 39/96 (40%), Positives = 59/96 (61%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L T+ A+ ++ +IREAQ D ++ + + G+ FT DE G ++ R+CVP
Sbjct: 1191 RGFLATLEAKPTLLDQIREAQKNDPDMRGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPD 1250
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ Q +LQEAH S ++IHPG T+MY DL+ YWW
Sbjct: 1251 DRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWW 1286
>gb|AAT85771.1| hypothetical protein [Oryza sativa Japonica Group]
gi|108709111|gb|ABF96906.1| retrotransposon protein,
putative, Ty3-gypsy subclass [Oryza sativa Japonica
Group]
Length = 1169
Score = 89.4 bits (220), Expect = 5e-16
Identities = 39/96 (40%), Positives = 59/96 (61%)
Frame = -3
Query: 290 QGILVTMVAQSSIRTRIREAQAGDQHLQFISSQIASGQQTEFTRDEEGIIYFRGRLCVPQ 111
+G L T+ A+ ++ +IREAQ D ++ + + G+ FT DE G ++ R+CVP
Sbjct: 686 RGFLATLEAKPTLLDQIREAQKNDPDIRGLLKNMKQGKAAGFTEDEHGTLWNGNRVCVPD 745
Query: 110 SHPVLQELLQEAHRSRFAIHPGETRMYRDLRRSYWW 3
+ Q +LQEAH S ++IHPG T+MY DL+ YWW
Sbjct: 746 DRELKQLILQEAHESPYSIHPGSTKMYLDLKEKYWW 781