BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00028501
         (1656 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Popu...   441   e-121
ref|XP_004299762.1| PREDICTED: tRNA pseudouridine synthase A-lik...   439   e-120
ref|XP_006372225.1| tRNA pseudouridine synthase family protein [...   436   e-119
ref|XP_002331405.1| predicted protein [Populus trichocarpa]           435   e-119
gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]        434   e-119
gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]     434   e-119
ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-lik...   431   e-118
ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus ...   429   e-117
ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-lik...   429   e-117
gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]     428   e-117
gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indi...   427   e-117
gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus pe...   426   e-116
emb|CBI33811.3| unnamed protein product [Vitis vinifera]              426   e-116
ref|XP_006344572.1| PREDICTED: uncharacterized protein LOC102592...   425   e-116
ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-lik...   424   e-116
ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-lik...   424   e-116
dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japo...   424   e-116
gb|AFW76096.1| pseudouridylate synthase [Zea mays]                    423   e-115
gb|ACF83621.1| unknown [Zea mays]                                     423   e-115
ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622...   420   e-114

>ref|XP_006372224.1| hypothetical protein POPTR_0018s14400g [Populus trichocarpa]
            gi|550318755|gb|ERP50021.1| hypothetical protein
            POPTR_0018s14400g [Populus trichocarpa]
          Length = 448

 Score =  441 bits (1135), Expect = e-121
 Identities = 239/429 (55%), Positives = 299/429 (69%), Gaps = 3/429 (0%)
 Frame = -2

Query: 1475 VME-KSTKVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXX 1299
            VME ++ KVY  YNHTD+C+ SRW  RE +Q+++ARPW++VV+FY   V           
Sbjct: 29   VMEAQNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFG 88

Query: 1298 XXXSENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQP 1119
                + H   D +E+  ++  +   V+   K+  GRW R+TFKIVLSYHG SFDGWQKQP
Sbjct: 89   TQAHDVHCD-DKIEEVSNETGLLEGVSNVDKS--GRWARVTFKIVLSYHGGSFDGWQKQP 145

Query: 1118 GLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRK 939
            GL+TVQG+VE+ LGRFVDEKKA+QLKE+  P+EGC  VAGRTDKGV+ALQQVCSFYTWRK
Sbjct: 146  GLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYTWRK 205

Query: 938  DVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFE 759
            DV   +I  +IN+VAPGK+R   ++ VSR FHPNF+A WR+Y YI PLND E       E
Sbjct: 206  DVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEIEGE 265

Query: 758  GHWSN--SSIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISKVDQ 585
            G   N  S   CE  Q NE  E   +  E+ + +S ++++        KPRSFS+ +V+Q
Sbjct: 266  GGIENFSSHENCE-KQRNECGE---LASEENVENSIISDED-ELQGAKKPRSFSVCRVNQ 320

Query: 584  LLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVE 405
            LLQQLEGK LSYKMFARDTKASR+ GP TECF++HARA ET++     D+E   RVMCVE
Sbjct: 321  LLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKGIRVMCVE 378

Query: 404  LVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYG 225
            L+ANRFLRKMVRVLVAT++REAAAGA +DAL+KLMD            PDGLCL++VGY 
Sbjct: 379  LIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDVGYT 438

Query: 224  EFKEKFCLI 198
            EF  + CLI
Sbjct: 439  EFDPRNCLI 447


>ref|XP_004299762.1| PREDICTED: tRNA pseudouridine synthase A-like [Fragaria vesca subsp.
            vesca]
          Length = 410

 Score =  439 bits (1129), Expect = e-120
 Identities = 228/430 (53%), Positives = 294/430 (68%), Gaps = 9/430 (2%)
 Frame = -2

Query: 1460 TKVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXSEN 1281
            +KV   YNHTD C  +RW T+E +Q++ ARPW++V++FY ++V                 
Sbjct: 3    SKVLVQYNHTDPCAFARWTTKESFQFMSARPWQQVIDFYSDVVKGQKPLSALLGTSSLSK 62

Query: 1280 HRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQ 1101
            +R  +++E  +S              R GRW R+TFKIV+SYHG SFDGWQKQP L+TVQ
Sbjct: 63   NRICNSIESVNSQN------------RGGRWARLTFKIVVSYHGGSFDGWQKQPELYTVQ 110

Query: 1100 GVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGD 921
             VVEQCLGRFVDEKKA+ LKE+ +P+EG   VAGRTDKGVTAL QVCSFYTW KDV C D
Sbjct: 111  SVVEQCLGRFVDEKKAQMLKEKGLPLEGAATVAGRTDKGVTALNQVCSFYTWSKDVRCQD 170

Query: 920  IMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNS 741
            I  +I+  APGK+R + VT VSRVFHPNF+A WR+Y YI P ND+EE      +   SN 
Sbjct: 171  IADAIDNAAPGKLRTVSVTEVSRVFHPNFSAKWRRYLYIFPFNDDEE------DREQSND 224

Query: 740  SIGCEDDQMNELQENHPVEKEQQLTSSHLNE---------DGCPAISELKPRSFSISKVD 588
            +   E+ Q+ +++ENH    E ++ S + +E         D     +E KP+ FS+S+V+
Sbjct: 225  T--GENAQILKIKENH---HEHEVVSDNCSEANVGNTNITDDVGLEAEKKPQMFSVSRVN 279

Query: 587  QLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCV 408
            +LLQ+LEGK LSYKMFARDTKASR+ GP TECF+FHARA E ++ C+  ++E  +R+MC+
Sbjct: 280  KLLQKLEGKLLSYKMFARDTKASRNEGPPTECFVFHARAREYRLPCS--EHEKGRRIMCI 337

Query: 407  ELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGY 228
            EL+ANRFLR+M+RVLVAT+IREAAAGAD+DALIKLMD            PDGLCL++VGY
Sbjct: 338  ELIANRFLRRMIRVLVATSIREAAAGADEDALIKLMDATCRRATAPPAPPDGLCLVDVGY 397

Query: 227  GEFKEKFCLI 198
             EF    CLI
Sbjct: 398  EEFDPLDCLI 407


>ref|XP_006372225.1| tRNA pseudouridine synthase family protein [Populus trichocarpa]
            gi|550318756|gb|ERP50022.1| tRNA pseudouridine synthase
            family protein [Populus trichocarpa]
          Length = 457

 Score =  436 bits (1121), Expect = e-119
 Identities = 241/436 (55%), Positives = 296/436 (67%), Gaps = 10/436 (2%)
 Frame = -2

Query: 1475 VME-KSTKVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXX 1299
            VME ++ KVY  YNHTD+C+ SRW  RE +Q+++ARPW++VV+FY   V           
Sbjct: 29   VMEAQNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFG 88

Query: 1298 XXXSENHRPADTVEDFHSDRDIS-----TEVTEPVKA--RTGRWERITFKIVLSYHGWSF 1140
                          D H D  I      T + E V    ++GRW R+TFKIVLSYHG SF
Sbjct: 89   TQVFFTME-LKKAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSF 147

Query: 1139 DGWQKQPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVC 960
            DGWQKQPGL+TVQG+VE+ LGRFVDEKKA+QLKE+  P+EGC  VAGRTDKGV+ALQQVC
Sbjct: 148  DGWQKQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVC 207

Query: 959  SFYTWRKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEE 780
            SFYTWRKDV   +I  +IN+VAPGK+R   ++ VSR FHPNF+A WR+Y YI PLND E 
Sbjct: 208  SFYTWRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGEN 267

Query: 779  LITRCFEGHWSN--SSIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSF 606
                  EG   N  S   CE  Q NE  E   +  E+ + +S ++++        KPRSF
Sbjct: 268  REEIEGEGGIENFSSHENCE-KQRNECGE---LASEENVENSIISDED-ELQGAKKPRSF 322

Query: 605  SISKVDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENC 426
            S+ +V+QLLQQLEGK LSYKMFARDTKASR+ GP TECF++HARA ET++     D+E  
Sbjct: 323  SVCRVNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKG 380

Query: 425  QRVMCVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLC 246
             RVMCVEL+ANRFLRKMVRVLVAT++REAAAGA +DAL+KLMD            PDGLC
Sbjct: 381  IRVMCVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLC 440

Query: 245  LLNVGYGEFKEKFCLI 198
            L++VGY EF  + CLI
Sbjct: 441  LVDVGYTEFDPRNCLI 456


>ref|XP_002331405.1| predicted protein [Populus trichocarpa]
          Length = 428

 Score =  435 bits (1119), Expect = e-119
 Identities = 238/432 (55%), Positives = 293/432 (67%), Gaps = 9/432 (2%)
 Frame = -2

Query: 1466 KSTKVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXS 1287
            ++ KVY  YNHTD+C+ SRW  RE +Q+++ARPW++VV+FY   V               
Sbjct: 4    QNDKVYVQYNHTDSCKFSRWTARESFQFMHARPWQEVVDFYSKSVNGQLSLLELFGTQVF 63

Query: 1286 ENHRPADTVEDFHSDRDIS-----TEVTEPVKA--RTGRWERITFKIVLSYHGWSFDGWQ 1128
                      D H D  I      T + E V    ++GRW R+TFKIVLSYHG SFDGWQ
Sbjct: 64   FTME-LKKAHDVHCDDKIEEVSNETGLLEGVSNVDKSGRWARVTFKIVLSYHGGSFDGWQ 122

Query: 1127 KQPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYT 948
            KQPGL+TVQG+VE+ LGRFVDEKKA+QLKE+  P+EGC  VAGRTDKGV+ALQQVCSFYT
Sbjct: 123  KQPGLNTVQGLVEKSLGRFVDEKKAQQLKEQCKPLEGCASVAGRTDKGVSALQQVCSFYT 182

Query: 947  WRKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITR 768
            WRKDV   +I  +IN+VAPGK+R   ++ VSR FHPNF+A WR+Y YI PLND E     
Sbjct: 183  WRKDVKPHEIEDAINDVAPGKVRVESISEVSRAFHPNFSAKWRRYLYIFPLNDGENREEI 242

Query: 767  CFEGHWSN--SSIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISK 594
              EG   N  S   CE  Q NE  E   +  E+ + +S ++++        KPRSFS+ +
Sbjct: 243  EGEGGIENFSSHENCE-KQRNECGE---LASEENVENSIISDED-ELQGAKKPRSFSVCR 297

Query: 593  VDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVM 414
            V+QLLQQLEGK LSYKMFARDTKASR+ GP TECF++HARA ET++     D+E   RVM
Sbjct: 298  VNQLLQQLEGKLLSYKMFARDTKASRNVGPPTECFLYHARATETRLPS--PDHEKGIRVM 355

Query: 413  CVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNV 234
            CVEL+ANRFLRKMVRVLVAT++REAAAGA +DAL+KLMD            PDGLCL++V
Sbjct: 356  CVELIANRFLRKMVRVLVATSVREAAAGAQEDALLKLMDATCRRATAPPAPPDGLCLVDV 415

Query: 233  GYGEFKEKFCLI 198
            GY EF  + CLI
Sbjct: 416  GYTEFDPRNCLI 427


>gb|EXC12817.1| tRNA pseudouridine synthase A [Morus notabilis]
          Length = 446

 Score =  434 bits (1117), Expect = e-119
 Identities = 232/427 (54%), Positives = 289/427 (67%), Gaps = 5/427 (1%)
 Frame = -2

Query: 1463 STKVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXSE 1284
            + K Y HYNH+D CR SRW  RE YQ++Y RPW++V++FY NLV                
Sbjct: 34   TNKDYVHYNHSDPCRFSRWTARESYQFMYGRPWQQVLDFYSNLVNGTTSFSSLFPL---- 89

Query: 1283 NHRPADTVEDFHSDRDISTEVTEPVKA-----RTGRWERITFKIVLSYHGWSFDGWQKQP 1119
             H+    V+D   D +I     + VK      R+GRW R TFK+VL YHG SFDGWQKQP
Sbjct: 90   -HKKYQ-VDDDDYDAEIPEISDDKVKLKKSEERSGRWARATFKVVLGYHGASFDGWQKQP 147

Query: 1118 GLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRK 939
            GL+TVQG+VE+ LGRFVDEKKA+ LK++ +P+E C VVAGRTDKGVTALQQVCSFYTWRK
Sbjct: 148  GLNTVQGLVERSLGRFVDEKKAQLLKDKCLPLEACTVVAGRTDKGVTALQQVCSFYTWRK 207

Query: 938  DVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFE 759
            D++C DI  +IN  A GK++A  V+ VSRVFHPNF+A WR+Y YI P ND E+       
Sbjct: 208  DITCQDIEEAINNAALGKLKAKSVSEVSRVFHPNFSAKWRRYLYIFPFNDEED------- 260

Query: 758  GHWSNSSIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISKVDQLL 579
                 S+   E+ +  E  E+   E   +   + + +D     S  KP SFS+S+VDQLL
Sbjct: 261  --EEQSNKNGENLETYEKIESGCGEWNDESFGNLIIDDSEELESGKKPSSFSVSRVDQLL 318

Query: 578  QQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELV 399
            + LEGK LSYKMFARDTKASR+ GP TECF++HARAAE ++  +  D    +++MCVELV
Sbjct: 319  RLLEGKLLSYKMFARDTKASRNEGPPTECFIYHARAAEARLPTS--DCTEGRKIMCVELV 376

Query: 398  ANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEF 219
            ANRFLRKMVRVLVAT+IREAAAGA++DAL+KLMD            PDGLCL++VGY EF
Sbjct: 377  ANRFLRKMVRVLVATSIREAAAGAEEDALLKLMDATCRRATAPPAPPDGLCLVDVGYSEF 436

Query: 218  KEKFCLI 198
            K   CLI
Sbjct: 437  KPNNCLI 443


>gb|EOY32187.1| Pseudouridine synthase isoform 2 [Theobroma cacao]
          Length = 446

 Score =  434 bits (1115), Expect = e-119
 Identities = 232/431 (53%), Positives = 291/431 (67%), Gaps = 4/431 (0%)
 Frame = -2

Query: 1478 SVMEKST--KVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXX 1305
            SVME     KVY HYNH+D+C  +RW  RE Y+++Y R W+ V++FY N+V         
Sbjct: 31   SVMENEAENKVYVHYNHSDSCSSARWTARESYRFMYDRAWQDVIDFYSNVVNGRLTLSTL 90

Query: 1304 XXXXXSENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQK 1125
                         T    H D + + EV++    R+GRWER+TFKI++SY+G +FDGWQK
Sbjct: 91   FG-----------TETSIHDDSE-TVEVSDEKGERSGRWERVTFKIIISYNGGAFDGWQK 138

Query: 1124 QPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTW 945
            QPGL+TVQ +VE+ LGRFVDEKKA+ LKE+S P+EGC VVAGRTDKGV+A++QVCSFYTW
Sbjct: 139  QPGLNTVQEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTW 198

Query: 944  RKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRC 765
            RKDV   DI  +IN VAPGK+R + V+ VSRVFHPNF+A WR Y YI PL++ E     C
Sbjct: 199  RKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSC 258

Query: 764  FEGHWSNSSI--GCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISKV 591
                   + I  G  ++Q N   EN   E  + L  S    D     +  KP  FS+ +V
Sbjct: 259  ENKKEVENFISDGNYNEQRNGYLENIRWENVENLIIS----DNMGLEAANKPTRFSVCRV 314

Query: 590  DQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMC 411
            +QLLQQLE K LSYKMFARDTKASR+ GP TECFM+HARAAE +I C++ D+   + VMC
Sbjct: 315  NQLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCSVNDHGEGREVMC 374

Query: 410  VELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVG 231
            VELVANRFLRKMVRVLVAT+IREAAAGA++DAL+KLM             PDGLCL++VG
Sbjct: 375  VELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVG 434

Query: 230  YGEFKEKFCLI 198
            Y EF  + CL+
Sbjct: 435  YTEFDPQNCLL 445


>ref|XP_004242889.1| PREDICTED: tRNA pseudouridine synthase A-like [Solanum lycopersicum]
          Length = 436

 Score =  431 bits (1107), Expect = e-118
 Identities = 220/421 (52%), Positives = 283/421 (67%), Gaps = 1/421 (0%)
 Frame = -2

Query: 1457 KVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXSENH 1278
            KV+ HYNHTD+C+ SRW +RECY+++YARPW KVV+FY ++V                +H
Sbjct: 26   KVHFHYNHTDSCKFSRWTSRECYEFMYARPWHKVVDFYADMVKGHISLSGLFGKETPADH 85

Query: 1277 RPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQG 1098
              A+  ED      ++  V +  + ++GRW R  F IVLSYHG SFDGWQKQP L+TVQG
Sbjct: 86   EDAEIREDHEKSELVNIPVKDKSRDKSGRWARANFMIVLSYHGGSFDGWQKQPDLNTVQG 145

Query: 1097 VVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGDI 918
            +VE+ LG FVDEKKA+ LK++++P+E C +VAGRTDKGV+A QQVCSFYTWRKDV   D+
Sbjct: 146  LVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKGVSASQQVCSFYTWRKDVKIEDV 205

Query: 917  MHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNSS 738
              ++++ APGKIR + +T VSR FHPNF+A WR Y YI P++D          G      
Sbjct: 206  KAALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHYLYIFPIDD--------VLGEKQGGQ 257

Query: 737  IGCEDDQMNELQENHPVEKEQQLTS-SHLNEDGCPAISELKPRSFSISKVDQLLQQLEGK 561
            I   DD  N  Q+N   + +   ++ + +N +    +   KP  F + KV++LL QLEGK
Sbjct: 258  IWI-DDSTNVHQQNECDKSDVDKSNVNEINNENDKLVHGNKPTKFEVGKVNRLLGQLEGK 316

Query: 560  SLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANRFLR 381
             LSYKMFARDTKASR+ GP TECF+FHARA ET I C  +   +  + MC+ELVANRFLR
Sbjct: 317  LLSYKMFARDTKASRNIGPPTECFVFHARAIETSIPCAKDG--SHMKTMCIELVANRFLR 374

Query: 380  KMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEFKEKFCL 201
            KMVRVLVATAIREAAAGADDDAL+KLMD            PDGLCL++VGY ++  + CL
Sbjct: 375  KMVRVLVATAIREAAAGADDDALLKLMDATCRRATAPPAPPDGLCLVDVGYTDYDIRHCL 434

Query: 200  I 198
            I
Sbjct: 435  I 435


>ref|XP_002524161.1| pseudouridylate synthase, putative [Ricinus communis]
            gi|223536579|gb|EEF38224.1| pseudouridylate synthase,
            putative [Ricinus communis]
          Length = 443

 Score =  429 bits (1104), Expect = e-117
 Identities = 232/424 (54%), Positives = 289/424 (68%), Gaps = 4/424 (0%)
 Frame = -2

Query: 1457 KVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXSENH 1278
            K+Y HYNHTD+C+  RW  RE +Q++YARPW++V +FY N+V                  
Sbjct: 32   KIYFHYNHTDSCKSFRWTARESFQFMYARPWQEVSDFYSNVVNGRLSFLELFRSQMHFVR 91

Query: 1277 RPADTVEDFHSDRDISTEVTE-PVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQ 1101
              A   ED +      TE+     + R GRW R+ FKI LSYHG SFDGWQKQPGL+TVQ
Sbjct: 92   DDAKIQEDSNK-----TELEHFSNEDRFGRWARVNFKIDLSYHGGSFDGWQKQPGLNTVQ 146

Query: 1100 GVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGD 921
            G+VE+ LG+FVDEKKA+QLKE   P+EGC VVAGRTDKGV+AL+QVCSFYTWRKDV   +
Sbjct: 147  GLVEKSLGKFVDEKKAQQLKEACKPLEGCAVVAGRTDKGVSALRQVCSFYTWRKDVRPHE 206

Query: 920  IMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNS 741
            I  +IN  APGKIR + V+ VSRVFHPNF+A WR+Y YI P+ND E+   + F+     +
Sbjct: 207  IEDAINSSAPGKIRVISVSEVSRVFHPNFSAKWRRYLYIFPINDGED-SEQSFDSEDLEN 265

Query: 740  SIGCE--DDQMNELQENHPVEKEQQLTSSHLNE-DGCPAISELKPRSFSISKVDQLLQQL 570
                E  D+Q N   E    E  ++L +S  +E +G       KPR FSI +V+QLLQQL
Sbjct: 266  LRSYEKYDEQRNGCAELTSEEHVEELITSDKDELEGAK-----KPRIFSICRVNQLLQQL 320

Query: 569  EGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANR 390
            EGK LSYK+FARDTKASR+ GP TECF++HARA E ++ C   D+   ++VMCVELVANR
Sbjct: 321  EGKLLSYKIFARDTKASRNVGPPTECFIYHARATEARLPC--PDHGEGRKVMCVELVANR 378

Query: 389  FLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEFKEK 210
            FLRKMVRVLVAT+IREAAAGA+DDAL+KLMD            PDGLCL +VGY EF  +
Sbjct: 379  FLRKMVRVLVATSIREAAAGAEDDALLKLMDASCRRASAPPAPPDGLCLFDVGYTEFDAQ 438

Query: 209  FCLI 198
             C++
Sbjct: 439  ICIV 442


>ref|XP_002275354.2| PREDICTED: tRNA pseudouridine synthase A-like [Vitis vinifera]
          Length = 433

 Score =  429 bits (1103), Expect = e-117
 Identities = 230/425 (54%), Positives = 284/425 (66%)
 Frame = -2

Query: 1469 EKSTKVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXX 1290
            EK  KVY HY HT   + SRW  RE +Q++Y RPW++V++FY N+V              
Sbjct: 17   EKENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFYSNVVTGRCSLLGLLGIET 76

Query: 1289 SENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLH 1110
               H   + VE   SD+     V    K R GRW R+TFKIVLSYHG SFDGWQKQPGL+
Sbjct: 77   HPIH-DGEIVEA--SDKTEFGNVL--TKDRGGRWARLTFKIVLSYHGASFDGWQKQPGLN 131

Query: 1109 TVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVS 930
            TVQG+VE  LGRFVDE+KA+QLKE+++PVEG + VAGRTDKGVTALQQVCSFYTW+KDV 
Sbjct: 132  TVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVK 191

Query: 929  CGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHW 750
              DI  +IN  APGK+R + V+ VSR+FHPNF+A WR YFYI PLND ++   +  E   
Sbjct: 192  VQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLNDGDD-GEQISENEM 250

Query: 749  SNSSIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISKVDQLLQQL 570
                I   +    +  E        + T + + +D     S  KP +FSIS+VDQLL+QL
Sbjct: 251  DIQKISFNEKYGEQGSECPAQYNGGENTENLIFDDDGEFESRKKPSTFSISRVDQLLRQL 310

Query: 569  EGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANR 390
            EGK LSYK+FARDTKASR+ GP TECF+FHARA E +++    D     +VMC+ELVANR
Sbjct: 311  EGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQ--FSDDGEGTKVMCIELVANR 368

Query: 389  FLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEFKEK 210
            FLRKMVRVLVAT+IREAAAGA+ DAL+KLMD            PDGLCL++VG+ EF  +
Sbjct: 369  FLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEFDPQ 428

Query: 209  FCLIR 195
             C IR
Sbjct: 429  ICFIR 433


>gb|EOY32186.1| Pseudouridine synthase isoform 1 [Theobroma cacao]
          Length = 444

 Score =  428 bits (1101), Expect = e-117
 Identities = 232/431 (53%), Positives = 290/431 (67%), Gaps = 4/431 (0%)
 Frame = -2

Query: 1478 SVMEKST--KVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXX 1305
            SVME     KVY HYNH+D+C  +RW  RE Y+++Y R W+ V++FY N+V         
Sbjct: 31   SVMENEAENKVYVHYNHSDSCSSARWTARESYRFMYDRAWQDVIDFYSNVVNGRLTLSTL 90

Query: 1304 XXXXXSENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQK 1125
                         T    H D + + EV++    R+GRWER+TFKI++SY+G +FDGWQK
Sbjct: 91   FG-----------TETSIHDDSE-TVEVSDEKGERSGRWERVTFKIIISYNGGAFDGWQK 138

Query: 1124 QPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTW 945
            QPGL+TVQ +VE+ LGRFVDEKKA+ LKE+S P+EGC VVAGRTDKGV+A++QVCSFYTW
Sbjct: 139  QPGLNTVQEIVERSLGRFVDEKKAQLLKEKSKPLEGCAVVAGRTDKGVSAIRQVCSFYTW 198

Query: 944  RKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRC 765
            RKDV   DI  +IN VAPGK+R + V+ VSRVFHPNF+A WR Y YI PL++ E     C
Sbjct: 199  RKDVKPWDIEDAINSVAPGKLRVVSVSEVSRVFHPNFSAKWRHYLYIFPLSNQEIEKQSC 258

Query: 764  FEGHWSNSSI--GCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISKV 591
                   + I  G  ++Q N   EN   E  + L  S    D     +  KP  FS+ +V
Sbjct: 259  ENKKEVENFISDGNYNEQRNGYLENIRWENVENLIIS----DNMGLEAANKPTRFSVCRV 314

Query: 590  DQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMC 411
            +QLLQQLE K LSYKMFARDTKASR+ GP TECFM+HARAAE +I C+  D+   + VMC
Sbjct: 315  NQLLQQLERKLLSYKMFARDTKASRNIGPPTECFMYHARAAEARIPCS--DHGEGREVMC 372

Query: 410  VELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVG 231
            VELVANRFLRKMVRVLVAT+IREAAAGA++DAL+KLM             PDGLCL++VG
Sbjct: 373  VELVANRFLRKMVRVLVATSIREAAAGAEEDALLKLMGATCRRATAPPAPPDGLCLVDVG 432

Query: 230  YGEFKEKFCLI 198
            Y EF  + CL+
Sbjct: 433  YTEFDPQNCLL 443


>gb|EAZ01977.1| hypothetical protein OsI_24011 [Oryza sativa Indica Group]
            gi|125598125|gb|EAZ37905.1| hypothetical protein
            OsJ_22255 [Oryza sativa Japonica Group]
          Length = 417

 Score =  427 bits (1099), Expect = e-117
 Identities = 231/421 (54%), Positives = 281/421 (66%), Gaps = 3/421 (0%)
 Frame = -2

Query: 1451 YCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXS-ENHR 1275
            + HYNHTDAC   RW  +E Y+Y+YARPW +VV+FY  LV                EN  
Sbjct: 30   HAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKDENGY 89

Query: 1274 PADTV-EDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQG 1098
              DT  ED+ +  +  T  T+  K R GRWER+TFKIVLSYHG SFDGWQKQPGL+TVQG
Sbjct: 90   SLDTNGEDYTAPSENQTS-TKSSKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNTVQG 148

Query: 1097 VVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGDI 918
            +VE+ LG+FVDEKKAKQL+ RS+P+EGC VVAGRTDKGVTALQQVCSFYTWRKDV   DI
Sbjct: 149  LVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSSDI 208

Query: 917  MHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNSS 738
              +IN+ AP K+R L V+ VSR FHPNFAA WR+Y YI PL+++ +LI+           
Sbjct: 209  KDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDVKLIS----------- 257

Query: 737  IGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISKVDQLLQQLEGKS 558
                     E Q    VE  +                 +KP+SF + KVD++++QLEGKS
Sbjct: 258  --------GEEQSAKTVEGPE---------------CNIKPQSFDVGKVDKIIRQLEGKS 294

Query: 557  LSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLED-YENCQRVMCVELVANRFLR 381
            LSYKMFARDT+ASRS GP TECFMFH+RAA  K+    E+  E   R +C+ELVANRFLR
Sbjct: 295  LSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLR 354

Query: 380  KMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEFKEKFCL 201
            KMVRVLVATAIREAAAGA++DAL+ LM+            PDGLCL++VGY +F  + C 
Sbjct: 355  KMVRVLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGYEDFNRQRCF 414

Query: 200  I 198
            I
Sbjct: 415  I 415


>gb|EMJ23926.1| hypothetical protein PRUPE_ppa006478mg [Prunus persica]
          Length = 409

 Score =  426 bits (1096), Expect = e-116
 Identities = 220/436 (50%), Positives = 285/436 (65%), Gaps = 16/436 (3%)
 Frame = -2

Query: 1457 KVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXSENH 1278
            KV   YNHTD C  +RW T+EC+Q++ ARPW++V++FY ++V                  
Sbjct: 4    KVLIQYNHTDPCSFARWTTKECFQFMSARPWQQVMDFYSDVVKDRKPLSALLGKACLSKS 63

Query: 1277 RPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQG 1098
               + +E     +D           + GRW R+TFKIV+SYHG SFDGWQ+QPGL+TVQ 
Sbjct: 64   NINNRLESLPPSQD-----------KGGRWARLTFKIVVSYHGGSFDGWQRQPGLNTVQS 112

Query: 1097 VVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGDI 918
            VVE+ LG+FVDE+KA+ LK++ +P+EG  +VAGRTDKGVTA+ QVCSFYTWRKDV   DI
Sbjct: 113  VVEKSLGKFVDERKAQMLKDKGLPLEGAALVAGRTDKGVTAVHQVCSFYTWRKDVKSQDI 172

Query: 917  MHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNSS 738
              +IN  APGK+R + VT VSR FHPNF A WR Y YI P ND E++             
Sbjct: 173  TDAINSAAPGKLRVVSVTEVSRAFHPNFTAKWRHYLYIFPFNDEEDM------------- 219

Query: 737  IGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISE----------------LKPRSF 606
                 +Q N+  EN   +  + L + H +++GC   +E                LKPR F
Sbjct: 220  -----EQSNQSGEN--AQNFKSLENYHEHKNGCDQCNEANVGNLVINDNEDLETLKPREF 272

Query: 605  SISKVDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENC 426
            ++S+V+QLLQ+LEGK LSYKMFARDTK SR+ GP TECF++HARA E+K+ C+  ++E  
Sbjct: 273  TVSRVNQLLQKLEGKLLSYKMFARDTKPSRNEGPPTECFLYHARAKESKLPCS--EHEKG 330

Query: 425  QRVMCVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLC 246
            +RVMC+ELVANRFLR+MVRVLVAT+IREAAAGAD+DAL+KLMD            PDGLC
Sbjct: 331  RRVMCIELVANRFLRRMVRVLVATSIREAAAGADEDALLKLMDATCRRATAPPAPPDGLC 390

Query: 245  LLNVGYGEFKEKFCLI 198
            L++VGY EF  + CLI
Sbjct: 391  LVDVGYEEFDPQDCLI 406


>emb|CBI33811.3| unnamed protein product [Vitis vinifera]
          Length = 402

 Score =  426 bits (1094), Expect = e-116
 Identities = 230/425 (54%), Positives = 281/425 (66%)
 Frame = -2

Query: 1469 EKSTKVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXX 1290
            EK  KVY HY HT   + SRW  RE +Q++Y RPW++V++FY N+V              
Sbjct: 17   EKENKVYVHYTHTHPTKFSRWTARESHQFMYKRPWQQVLDFYSNVVTGRCSLLGLLGIET 76

Query: 1289 SENHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLH 1110
               H   + VE   SD+     V    K R GRW R+TFKIVLSYHG SFDGWQKQPGL+
Sbjct: 77   HPIH-DGEIVEA--SDKTEFGNVL--TKDRGGRWARLTFKIVLSYHGASFDGWQKQPGLN 131

Query: 1109 TVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVS 930
            TVQG+VE  LGRFVDE+KA+QLKE+++PVEG + VAGRTDKGVTALQQVCSFYTW+KDV 
Sbjct: 132  TVQGLVEASLGRFVDERKAQQLKEKNLPVEGMVTVAGRTDKGVTALQQVCSFYTWKKDVK 191

Query: 929  CGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHW 750
              DI  +IN  APGK+R + V+ VSR+FHPNF+A WR YFYI PLND             
Sbjct: 192  VQDIEDAINGAAPGKLRVISVSEVSRIFHPNFSAKWRHYFYIFPLND------------- 238

Query: 749  SNSSIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISKVDQLLQQL 570
                 G + +Q++        E E  +     NE      +  KP +FSIS+VDQLL+QL
Sbjct: 239  -----GDDGEQIS--------ENEMDIQKISFNE------NRKKPSTFSISRVDQLLRQL 279

Query: 569  EGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANR 390
            EGK LSYK+FARDTKASR+ GP TECF+FHARA E +++    D     +VMC+ELVANR
Sbjct: 280  EGKLLSYKIFARDTKASRNIGPPTECFVFHARATEARLQ--FSDDGEGTKVMCIELVANR 337

Query: 389  FLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEFKEK 210
            FLRKMVRVLVAT+IREAAAGA+ DAL+KLMD            PDGLCL++VG+ EF  +
Sbjct: 338  FLRKMVRVLVATSIREAAAGAEQDALLKLMDATCRRATAPPAPPDGLCLIDVGFTEFDPQ 397

Query: 209  FCLIR 195
             C IR
Sbjct: 398  ICFIR 402


>ref|XP_006344572.1| PREDICTED: uncharacterized protein LOC102592314 [Solanum tuberosum]
          Length = 436

 Score =  425 bits (1093), Expect = e-116
 Identities = 219/421 (52%), Positives = 286/421 (67%), Gaps = 1/421 (0%)
 Frame = -2

Query: 1457 KVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXSENH 1278
            KV+ HYNHTD+C+ SRW +RECY+++YAR W KVV+FY ++V                +H
Sbjct: 26   KVHFHYNHTDSCKFSRWTSRECYEFMYARLWHKVVDFYADMVKGHTSLSRLFGKETPADH 85

Query: 1277 RPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQG 1098
              A+  ED      ++  V +  + ++GRW R  F IVLSYHG SFDGWQKQP L+TVQG
Sbjct: 86   EDAEIREDHEKSELVNIPVKDKSRDKSGRWARANFMIVLSYHGGSFDGWQKQPDLNTVQG 145

Query: 1097 VVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGDI 918
            +VE+ LG FVDEKKA+ LK++++P+E C +VAGRTDKGV+A QQVCSFYTWRKDV   D+
Sbjct: 146  LVERSLGEFVDEKKAQLLKDKNLPLEACALVAGRTDKGVSASQQVCSFYTWRKDVKIEDV 205

Query: 917  MHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGH-WSNS 741
              ++++ APGKIR + +T VSR FHPNF+A WR Y YI P++D   ++     G  W + 
Sbjct: 206  KAALDKAAPGKIRVVSLTKVSREFHPNFSAKWRHYLYIFPIDD---VLGEKQRGQIWIDG 262

Query: 740  SIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISKVDQLLQQLEGK 561
            S   +  Q NE  ++  ++K      + +N++    +   KP  F + KV++LL QLEGK
Sbjct: 263  S--TDVHQQNECGKS-DIDKS---NVNEINDENNELVHGNKPTKFEVGKVNRLLGQLEGK 316

Query: 560  SLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVANRFLR 381
             LSYKMFARDTKASR+ GP TECF+FHARA ET I C  +   +  + MC+ELVANRFLR
Sbjct: 317  LLSYKMFARDTKASRNIGPPTECFVFHARAIETSIPCAKDG--SLMKTMCIELVANRFLR 374

Query: 380  KMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEFKEKFCL 201
            KMVRVLVATAIREAAAGADDDAL+KLMD            PDGLCL++VGY ++  + CL
Sbjct: 375  KMVRVLVATAIREAAAGADDDALLKLMDATCRRATAPPAPPDGLCLVDVGYTDYDIRHCL 434

Query: 200  I 198
            I
Sbjct: 435  I 435


>ref|XP_004166389.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  424 bits (1090), Expect = e-116
 Identities = 231/425 (54%), Positives = 287/425 (67%), Gaps = 5/425 (1%)
 Frame = -2

Query: 1457 KVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXSENH 1278
            K Y HYNHTD CR +RW  RE YQ++Y RPW++V++FY + V                +H
Sbjct: 30   KDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGTEICRDH 89

Query: 1277 RPADTVEDFHSDRDISTEVTEP-VKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQ 1101
              A+T   ++S      E+    VK +TGRW R TFKIVLSY G SFDGWQKQPGL+TVQ
Sbjct: 90   DDAETPLIYNS-----AELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQ 144

Query: 1100 GVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGD 921
            G+VE+ LG+FVDEKKA+ LK++ +P+EGC +VAGRTDKGVTAL+QVCSFYTWR DV   D
Sbjct: 145  GLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQD 204

Query: 920  IMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNS 741
            I  SIN  APGK+R   V+ VSR+FHPNF+A WR+Y YILPLND E +        W N 
Sbjct: 205  IEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENM--EPDSTTWEN- 261

Query: 740  SIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISEL----KPRSFSISKVDQLLQQ 573
                E+ +     +      E+ +   H N    P   EL    KP++FSI++V+QLL++
Sbjct: 262  ---VENREEENFVKIEASNGEKCVDGIHDNLVLSPNDEELVSADKPQTFSITRVNQLLRK 318

Query: 572  LEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVAN 393
            LEGK LSYKMFARDTKASR+ GP TECF++HARAAET++ C LE     + VMCVELVAN
Sbjct: 319  LEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPC-LEQGVG-RSVMCVELVAN 376

Query: 392  RFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEFKE 213
            RFLRKMVRVLVATAIREAAAGA +DAL++LMD            PDGL L++VGY +F  
Sbjct: 377  RFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDS 436

Query: 212  KFCLI 198
            + C I
Sbjct: 437  QICFI 441


>ref|XP_004137363.1| PREDICTED: tRNA pseudouridine synthase A-like [Cucumis sativus]
          Length = 444

 Score =  424 bits (1090), Expect = e-116
 Identities = 231/425 (54%), Positives = 287/425 (67%), Gaps = 5/425 (1%)
 Frame = -2

Query: 1457 KVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXSENH 1278
            K Y HYNHTD CR +RW  RE YQ++Y RPW++V++FY + V                +H
Sbjct: 30   KDYLHYNHTDRCRSARWTARESYQFMYGRPWQEVLDFYSHAVNGRFSLSSLLGTEICRDH 89

Query: 1277 RPADTVEDFHSDRDISTEVTEP-VKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQ 1101
              A+T   ++S      E+    VK +TGRW R TFKIVLSY G SFDGWQKQPGL+TVQ
Sbjct: 90   DDAETPLIYNS-----AELNRAAVKDKTGRWARATFKIVLSYDGNSFDGWQKQPGLNTVQ 144

Query: 1100 GVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGD 921
            G+VE+ LG+FVDEKKA+ LK++ +P+EGC +VAGRTDKGVTAL+QVCSFYTWR DV   D
Sbjct: 145  GLVERSLGKFVDEKKAQMLKDKCLPLEGCALVAGRTDKGVTALRQVCSFYTWRTDVKPQD 204

Query: 920  IMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNS 741
            I  SIN  APGK+R   V+ VSR+FHPNF+A WR+Y YILPLND E +        W N 
Sbjct: 205  IEDSINSAAPGKLRTSSVSQVSRIFHPNFSAKWRRYLYILPLNDGENM--EPDSTTWEN- 261

Query: 740  SIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISEL----KPRSFSISKVDQLLQQ 573
                E+ +     +      E+ +   H N    P   EL    KP++FSI++V+QLL++
Sbjct: 262  ---VENREEENFVKIEASNGEKCVDGIHDNLVLSPNDQELVSADKPQTFSITRVNQLLRK 318

Query: 572  LEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELVAN 393
            LEGK LSYKMFARDTKASR+ GP TECF++HARAAET++ C LE     + VMCVELVAN
Sbjct: 319  LEGKLLSYKMFARDTKASRNEGPPTECFVYHARAAETRLPC-LEQGVG-RSVMCVELVAN 376

Query: 392  RFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEFKE 213
            RFLRKMVRVLVATAIREAAAGA +DAL++LMD            PDGL L++VGY +F  
Sbjct: 377  RFLRKMVRVLVATAIREAAAGAGEDALLELMDATCRRATAPPAPPDGLSLVDVGYTDFDS 436

Query: 212  KFCLI 198
            + C I
Sbjct: 437  QICFI 441


>dbj|BAD45865.1| pseudouridylate synthase-like [Oryza sativa Japonica Group]
          Length = 495

 Score =  424 bits (1089), Expect = e-116
 Identities = 229/417 (54%), Positives = 279/417 (66%), Gaps = 3/417 (0%)
 Frame = -2

Query: 1451 YCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXS-ENHR 1275
            + HYNHTDAC   RW  +E Y+Y+YARPW +VV+FY  LV                EN  
Sbjct: 30   HAHYNHTDACHHLRWTAKESYEYMYARPWSRVVDFYAELVRTGAGAAGLADLFGKDENGY 89

Query: 1274 PADTV-EDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHTVQG 1098
              DT  ED+ +  +  T  T+  K R GRWER+TFKIVLSYHG SFDGWQKQPGL+TVQG
Sbjct: 90   SLDTNGEDYTAPSENQTS-TKSSKDRGGRWERVTFKIVLSYHGGSFDGWQKQPGLNTVQG 148

Query: 1097 VVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSCGDI 918
            +VE+ LG+FVDEKKAKQL+ RS+P+EGC VVAGRTDKGVTALQQVCSFYTWRKDV   DI
Sbjct: 149  LVEKHLGQFVDEKKAKQLEARSLPLEGCAVVAGRTDKGVTALQQVCSFYTWRKDVKSSDI 208

Query: 917  MHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWSNSS 738
              +IN+ AP K+R L V+ VSR FHPNFAA WR+Y YI PL+++ +LI+           
Sbjct: 209  KDAINKAAPDKLRPLHVSQVSREFHPNFAAKWRRYLYIFPLDEDVKLIS----------- 257

Query: 737  IGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRSFSISKVDQLLQQLEGKS 558
                     E Q    VE  +                 +KP+SF + KVD++++QLEGKS
Sbjct: 258  --------GEEQSAKTVEGPE---------------CNIKPQSFDVGKVDKIIRQLEGKS 294

Query: 557  LSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLED-YENCQRVMCVELVANRFLR 381
            LSYKMFARDT+ASRS GP TECFMFH+RAA  K+    E+  E   R +C+ELVANRFLR
Sbjct: 295  LSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHTADENCEEGTTRAICIELVANRFLR 354

Query: 380  KMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEFKEK 210
            KMVRVLVATAIREAAAGA++DAL+ LM+            PDGLCL++VGY +F  +
Sbjct: 355  KMVRVLVATAIREAAAGAEEDALLNLMEATCRRATAPPAPPDGLCLVDVGYEDFNRQ 411


>gb|AFW76096.1| pseudouridylate synthase [Zea mays]
          Length = 422

 Score =  423 bits (1088), Expect = e-115
 Identities = 225/437 (51%), Positives = 286/437 (65%), Gaps = 2/437 (0%)
 Frame = -2

Query: 1502 TGSKRGCLSVMEKSTKVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXX 1323
            T SK    +V     + + HY HTDAC   RW  +E Y+Y+YARPW +VV+FY  LV   
Sbjct: 22   TASKAAAAAV---ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAG 78

Query: 1322 XXXXXXXXXXXSE--NHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHG 1149
                       ++  ++      E++ +  +  T  T   K R GRWER+TFK+V+SYHG
Sbjct: 79   AGAAGLAKLFGNDEKDYTLYTAGENYLTPSEKPTTTTFS-KGRGGRWERVTFKVVISYHG 137

Query: 1148 WSFDGWQKQPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQ 969
             SFDGWQKQPGL+TVQG+VE+ LG+FVDE+KAKQL+ RS+P+EGC +VAGRTDKGVTALQ
Sbjct: 138  GSFDGWQKQPGLNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVAGRTDKGVTALQ 197

Query: 968  QVCSFYTWRKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLND 789
            QVCSFYTWRKDV  GDI  +INE AP K++ L V+ VSR FHPNFAA WR+Y YI PL++
Sbjct: 198  QVCSFYTWRKDVKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDE 257

Query: 788  NEELITRCFEGHWSNSSIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRS 609
            + +LI                   + E Q +  +E  +                 +KP+S
Sbjct: 258  DADLI-------------------LGEAQSSKTLENSEH---------------NIKPQS 283

Query: 608  FSISKVDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYEN 429
            F +SKVD++L+ L GK+LSYKMFARDT+ASRS GP TECFMFH+RAA  K+    ED++ 
Sbjct: 284  FDVSKVDEILKPLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKG 343

Query: 428  CQRVMCVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGL 249
               VMCVELVANRFLRKMVRVLVATAIREAAAGA  DAL+ LM+            P+GL
Sbjct: 344  GMVVMCVELVANRFLRKMVRVLVATAIREAAAGAGADALLNLMEATDRRATAPPAPPEGL 403

Query: 248  CLLNVGYGEFKEKFCLI 198
            CL++VGY +F ++ C I
Sbjct: 404  CLVDVGYEDFDKQRCFI 420


>gb|ACF83621.1| unknown [Zea mays]
          Length = 414

 Score =  423 bits (1088), Expect = e-115
 Identities = 225/437 (51%), Positives = 286/437 (65%), Gaps = 2/437 (0%)
 Frame = -2

Query: 1502 TGSKRGCLSVMEKSTKVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXX 1323
            T SK    +V     + + HY HTDAC   RW  +E Y+Y+YARPW +VV+FY  LV   
Sbjct: 14   TASKAAAAAV---ELEEHVHYKHTDACHQLRWTAKESYEYMYARPWSRVVDFYAELVRAG 70

Query: 1322 XXXXXXXXXXXSE--NHRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHG 1149
                       ++  ++      E++ +  +  T  T   K R GRWER+TFK+V+SYHG
Sbjct: 71   AGAAGLAKLFGNDEKDYTLYTAGENYLTPSEKPTTTTFS-KGRGGRWERVTFKVVISYHG 129

Query: 1148 WSFDGWQKQPGLHTVQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQ 969
             SFDGWQKQPGL+TVQG+VE+ LG+FVDE+KAKQL+ RS+P+EGC +VAGRTDKGVTALQ
Sbjct: 130  GSFDGWQKQPGLNTVQGLVEKHLGQFVDERKAKQLEARSLPIEGCAIVAGRTDKGVTALQ 189

Query: 968  QVCSFYTWRKDVSCGDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLND 789
            QVCSFYTWRKDV  GDI  +INE AP K++ L V+ VSR FHPNFAA WR+Y YI PL++
Sbjct: 190  QVCSFYTWRKDVKSGDIKGAINEAAPDKLKPLHVSEVSREFHPNFAAKWRRYMYIFPLDE 249

Query: 788  NEELITRCFEGHWSNSSIGCEDDQMNELQENHPVEKEQQLTSSHLNEDGCPAISELKPRS 609
            + +LI                   + E Q +  +E  +                 +KP+S
Sbjct: 250  DADLI-------------------LGEAQSSKTLENSEH---------------NIKPQS 275

Query: 608  FSISKVDQLLQQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYEN 429
            F +SKVD++L+ L GK+LSYKMFARDT+ASRS GP TECFMFH+RAA  K+    ED++ 
Sbjct: 276  FDVSKVDEILKPLAGKTLSYKMFARDTQASRSVGPPTECFMFHSRAAVAKLHSANEDHKG 335

Query: 428  CQRVMCVELVANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGL 249
               VMCVELVANRFLRKMVRVLVATAIREAAAGA  DAL+ LM+            P+GL
Sbjct: 336  GMVVMCVELVANRFLRKMVRVLVATAIREAAAGAGADALLNLMEATDRRATAPPAPPEGL 395

Query: 248  CLLNVGYGEFKEKFCLI 198
            CL++VGY +F ++ C I
Sbjct: 396  CLVDVGYEDFDKQRCFI 412


>ref|XP_006474334.1| PREDICTED: uncharacterized protein LOC102622951 [Citrus sinensis]
          Length = 454

 Score =  420 bits (1079), Expect = e-114
 Identities = 220/427 (51%), Positives = 286/427 (66%), Gaps = 7/427 (1%)
 Frame = -2

Query: 1457 KVYCHYNHTDACRLSRWNTRECYQYLYARPWKKVVNFYENLVXXXXXXXXXXXXXXSEN- 1281
            KVY HYNHTD+C+ +RW  +E Y+++ ARPW+ VV+FY ++V              +   
Sbjct: 43   KVYVHYNHTDSCKFARWTAKESYEFMRARPWQDVVDFYSDIVSGRLTLSDLFGTERTRTS 102

Query: 1280 --HRPADTVEDFHSDRDISTEVTEPVKARTGRWERITFKIVLSYHGWSFDGWQKQPGLHT 1107
              H   + + +  +  D + +     +A +GRW R  FKIV+SYHG SFDGWQKQP L+T
Sbjct: 103  SIHNDENEIPEVEAGSDANED-----RAGSGRWARANFKIVVSYHGPSFDGWQKQPDLNT 157

Query: 1106 VQGVVEQCLGRFVDEKKAKQLKERSMPVEGCIVVAGRTDKGVTALQQVCSFYTWRKDVSC 927
            VQG+VE+CLG FVDEK+AK LKE+  P+EGC +VAGRTDKGVTALQQVCSFYTWRKDV  
Sbjct: 158  VQGLVEKCLGSFVDEKRAKLLKEKCKPLEGCALVAGRTDKGVTALQQVCSFYTWRKDVKP 217

Query: 926  GDIMHSINEVAPGKIRALEVTGVSRVFHPNFAATWRQYFYILPLNDNEELITRCFEGHWS 747
             +I  +IN  APGKIR + V+ VSRVFHPNF+A WR+Y YI PLND E+           
Sbjct: 218  SEIEDAINSAAPGKIRVISVSQVSRVFHPNFSAKWRRYLYIFPLNDGEK----------R 267

Query: 746  NSSIGCEDDQMNELQENHPVEKE----QQLTSSHLNEDGCPAISELKPRSFSISKVDQLL 579
              SI  E +  N    N+  ++     + + +  +N++G     E KPR+F+I +V+ LL
Sbjct: 268  EQSIDSEVEVENFHTSNNVGKQSNGCYENIENLLINDEGGFGSHE-KPRNFTICRVNLLL 326

Query: 578  QQLEGKSLSYKMFARDTKASRSSGPATECFMFHARAAETKIRCNLEDYENCQRVMCVELV 399
            Q+LEGK LSYK FARDTKASR+ GP TECF++HARA E  + C + D+   ++VMCVELV
Sbjct: 327  QRLEGKLLSYKTFARDTKASRNIGPPTECFIYHARATEATLPCPVNDHGEGRKVMCVELV 386

Query: 398  ANRFLRKMVRVLVATAIREAAAGADDDALIKLMDXXXXXXXXXXXXPDGLCLLNVGYGEF 219
            ANRFLRKMVRVLVAT +REAAAGAD+DAL+KL+D            P+GLCL++VGY  F
Sbjct: 387  ANRFLRKMVRVLVATLVREAAAGADEDALLKLVDATCRRATAPPAPPEGLCLVDVGYTNF 446

Query: 218  KEKFCLI 198
              +  LI
Sbjct: 447  DPQNSLI 453