BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00025858
         (819 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao] gi|508...   327   4e-87
dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]     323   5e-86
ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,...   323   6e-86
ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,...   322   1e-85
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   322   1e-85
ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, part...   322   1e-85
ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   320   4e-85
gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]     320   5e-85
ref|XP_006376620.1| RNA polymerase sigma subunit SigE family pro...   320   5e-85
ref|XP_002333134.1| predicted protein [Populus trichocarpa]           320   5e-85
gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus pe...   319   9e-85
ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,...   319   9e-85
ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,...   319   9e-85
ref|XP_006593758.1| PREDICTED: RNA polymerase sigma factor sigE,...   318   1e-84
ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,...   318   1e-84
ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thal...   317   3e-84
gb|ESW33340.1| hypothetical protein PHAVU_001G061400g [Phaseolus...   316   6e-84
ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,...   316   6e-84
ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citr...   315   1e-83
ref|XP_002874170.1| hypothetical protein ARALYDRAFT_489269 [Arab...   315   1e-83

>gb|EOY23460.1| Sigma factor E isoform 1 [Theobroma cacao]
           gi|508776205|gb|EOY23461.1| Sigma factor E isoform 1
           [Theobroma cacao]
          Length = 516

 Score =  327 bits (837), Expect = 4e-87
 Identities = 170/242 (70%), Positives = 191/242 (78%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           GQAARNKLIKHNLRLVLF INKYF + A G +FQ+ CQAG +GLITAIDRFEPRR FRLS
Sbjct: 275 GQAARNKLIKHNLRLVLFSINKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPRRRFRLS 334

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TY LFWIRH+I RSMTL+SFT+V FG+ESVR EIQ+ KLEL FEL R+PTE+E   +V I
Sbjct: 335 TYSLFWIRHAIIRSMTLSSFTRVSFGLESVRVEIQRAKLELLFELHREPTEEEIIKKVGI 394

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY +V++ S+PV SLH++H VTQEEFINGITDIDG VGGD  RQPA           
Sbjct: 395 SPERYQEVMRASKPVASLHSRHSVTQEEFINGITDIDG-VGGDHRRQPALLRLALDDVLD 453

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HP RVDYLRR
Sbjct: 454 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 513

Query: 98  YI 93
           Y+
Sbjct: 514 YV 515


>dbj|BAJ34205.1| unnamed protein product [Thellungiella halophila]
          Length = 511

 Score =  323 bits (828), Expect = 5e-86
 Identities = 166/242 (68%), Positives = 191/242 (78%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFV+NKYF +   G KFQ+ CQAG RGLITAIDRFEP+R FRLS
Sbjct: 270 GRAARNKLIKHNLRLVLFVMNKYFQDFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLS 329

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I RSMT ++FT+VPFG+ESVR EI K K+EL FELGR PTE E  +R++I
Sbjct: 330 TYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKTKMELLFELGRLPTEDEVVERLKI 389

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY +V++ ++PVFSL++KH VTQEEFINGITD+DG VG D  RQPA           
Sbjct: 390 SPERYREVLRAAKPVFSLNSKHSVTQEEFINGITDVDG-VGADNRRQPAILRLALDDVLD 448

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           H  RVDYLR+
Sbjct: 449 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQ 508

Query: 98  YI 93
           YI
Sbjct: 509 YI 510


>ref|XP_004308009.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Fragaria vesca subsp.
            vesca]
          Length = 520

 Score =  323 bits (827), Expect = 6e-86
 Identities = 167/242 (69%), Positives = 192/242 (79%)
 Frame = -2

Query: 818  GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
            G+AARNKLIKHNLRLVLFVINKYF + A G KFQ+ CQAG +GLITAIDRFEP+R FRLS
Sbjct: 279  GRAARNKLIKHNLRLVLFVINKYFQDFANGPKFQDLCQAGVKGLITAIDRFEPQRRFRLS 338

Query: 638  TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
            TYGLFWIRH+I RSMTL+SFT+V FG+ESVR EIQK KLE+  +L R PTE E  ++V I
Sbjct: 339  TYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAEIQKAKLEMLVQLKRMPTEDEIIEKVGI 398

Query: 458  SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
            S ERY++V++ S+PVFSL+++H VTQEEFINGITD+DG V GD  R+PA           
Sbjct: 399  SPERYHEVMRASKPVFSLNSRHSVTQEEFINGITDVDG-VDGDNRRKPALLRLAIDDVLD 457

Query: 278  XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
             LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HP RVDYLRR
Sbjct: 458  SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 517

Query: 98   YI 93
            YI
Sbjct: 518  YI 519


>ref|XP_006350582.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like [Solanum tuberosum]
          Length = 516

 Score =  322 bits (825), Expect = 1e-85
 Identities = 167/242 (69%), Positives = 191/242 (78%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFV+NKYF + A G +FQ+ CQAG +GLITAIDRFEP R FRLS
Sbjct: 275 GRAARNKLIKHNLRLVLFVMNKYFQDFANGSRFQDLCQAGVKGLITAIDRFEPNRKFRLS 334

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I RSMT +SFTKVPFG+ES+R EIQK KLEL FEL R PT++E   RV +
Sbjct: 335 TYGLFWIRHAIIRSMTTSSFTKVPFGLESIRVEIQKAKLELLFELQRIPTDEEIIRRVGL 394

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY++V+K S+PV SLHA++  TQEE INGITD+DG V GDK +QPA           
Sbjct: 395 SPERYHEVMKVSKPVSSLHARNKTTQEELINGITDVDG-VDGDKRKQPALLRLALDDVLD 453

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HPTRVDY+RR
Sbjct: 454 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRR 513

Query: 98  YI 93
           YI
Sbjct: 514 YI 515


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
           gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
           rpoD, putative [Ricinus communis]
          Length = 501

 Score =  322 bits (825), Expect = 1e-85
 Identities = 165/242 (68%), Positives = 190/242 (78%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLV+FV+NKYF + A G +FQ+ CQAG +GLITAIDRFEP+R F+LS
Sbjct: 262 GRAARNKLIKHNLRLVMFVMNKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPQRRFQLS 321

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TY LFWIRH+I RSMTL+SFTKV FG+ESVR EIQK KLEL  EL R+PTE+E  +RV I
Sbjct: 322 TYSLFWIRHAIIRSMTLSSFTKVSFGLESVRTEIQKAKLELLIELQRRPTEEEIIERVGI 381

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY++V++ ++P  SLHA+H VTQEEFINGITDID   GGD  RQPA           
Sbjct: 382 SAERYHEVIRAAKPALSLHARHAVTQEEFINGITDID---GGDNRRQPALLRLALDDVLD 438

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HP RVDYLRR
Sbjct: 439 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVKALMKLKHPARVDYLRR 498

Query: 98  YI 93
           Y+
Sbjct: 499 YV 500


>ref|XP_006287402.1| hypothetical protein CARUB_v10000608mg, partial [Capsella rubella]
            gi|482556108|gb|EOA20300.1| hypothetical protein
            CARUB_v10000608mg, partial [Capsella rubella]
          Length = 557

 Score =  322 bits (824), Expect = 1e-85
 Identities = 165/242 (68%), Positives = 190/242 (78%)
 Frame = -2

Query: 818  GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
            G+AARNKLIKHNLRLVLFV+NKYF E   G KFQ+ CQAG +GLITAIDRFEP+R FRLS
Sbjct: 316  GRAARNKLIKHNLRLVLFVMNKYFQEFTNGPKFQDLCQAGMKGLITAIDRFEPKRKFRLS 375

Query: 638  TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
            TYGLFWIRH+I RSMT ++FT+VPFG+ESVR EI K K+EL FELGR PTE E   R++I
Sbjct: 376  TYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKAKMELLFELGRLPTEDEVIKRLKI 435

Query: 458  SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
            + ERY +V++ ++PVFSL++KH VTQEEFINGITD+DG VG D  RQPA           
Sbjct: 436  TPERYREVLRAAKPVFSLNSKHAVTQEEFINGITDVDG-VGADNRRQPALLRLALDDVLD 494

Query: 278  XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
             LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           H  RVDYLR+
Sbjct: 495  SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQ 554

Query: 98   YI 93
            YI
Sbjct: 555  YI 556


>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
           gi|302143685|emb|CBI22546.3| unnamed protein product
           [Vitis vinifera]
          Length = 518

 Score =  320 bits (820), Expect = 4e-85
 Identities = 166/242 (68%), Positives = 192/242 (79%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           GQAARNKLIKHNLRLVLFVINKYF E A G KFQ+ CQAG +GLITAIDRFEP+R FRLS
Sbjct: 277 GQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLS 336

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I RSMTL+SFT+V FG+ESVR EIQ+ KLEL F+L R PTE+E  ++V I
Sbjct: 337 TYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRAKLELLFKLQRLPTEEEIIEKVGI 396

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY++V++ S+ V SLHA+H  TQEE+INGITD++G VGGD+ RQ A           
Sbjct: 397 SPERYHEVMRASKSVLSLHARHATTQEEYINGITDVEG-VGGDRGRQLALLRLALDDVLD 455

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNL+ISREMVR           HP RVDYLR+
Sbjct: 456 SLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMVRKHEVKALMKLKHPARVDYLRQ 515

Query: 98  YI 93
           YI
Sbjct: 516 YI 517


>gb|EXB72455.1| RNA polymerase sigma factor rpoD [Morus notabilis]
          Length = 517

 Score =  320 bits (819), Expect = 5e-85
 Identities = 163/242 (67%), Positives = 192/242 (79%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFV+NKYF +   G KFQ+ CQAG RGLITAIDRFEP+R FRLS
Sbjct: 276 GRAARNKLIKHNLRLVLFVMNKYFQDFTNGPKFQDLCQAGVRGLITAIDRFEPKRRFRLS 335

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I RSMT++SFT+V FG+ESVR EIQK K+EL+FEL R PTE+E  ++V I
Sbjct: 336 TYGLFWIRHAIIRSMTVSSFTRVSFGLESVRAEIQKAKIELTFELKRLPTEEEIIEKVGI 395

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY++V++ S+PV SL+++H+ TQEEFIN ITD+DG V GD  R+PA           
Sbjct: 396 SPERYHEVMRASKPVISLNSRHVTTQEEFINAITDVDG-VDGDDRRKPALLRLALDDVLD 454

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HP RVDYLRR
Sbjct: 455 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 514

Query: 98  YI 93
           Y+
Sbjct: 515 YM 516


>ref|XP_006376620.1| RNA polymerase sigma subunit SigE family protein [Populus
           trichocarpa] gi|550326141|gb|ERP54417.1| RNA polymerase
           sigma subunit SigE family protein [Populus trichocarpa]
          Length = 512

 Score =  320 bits (819), Expect = 5e-85
 Identities = 165/242 (68%), Positives = 188/242 (77%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFVI KYF + A G KFQ+FCQAG +GLITAIDRFEP+R FRLS
Sbjct: 273 GRAARNKLIKHNLRLVLFVIKKYFQDFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLS 332

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I RSMTL+SFT+V FG+ES+R EIQK KLEL F+L RQP E E  ++VRI
Sbjct: 333 TYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRI 392

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY++V + S+PV SLH++H  TQEEFI GI D+D   GGD  RQ A           
Sbjct: 393 SPERYHEVTRASKPVLSLHSRHKTTQEEFIGGIADVD---GGDDRRQSALLRLALDDVLD 449

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HPTRVDYLRR
Sbjct: 450 SLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRR 509

Query: 98  YI 93
           Y+
Sbjct: 510 YV 511


>ref|XP_002333134.1| predicted protein [Populus trichocarpa]
          Length = 512

 Score =  320 bits (819), Expect = 5e-85
 Identities = 165/242 (68%), Positives = 188/242 (77%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFVI KYF + A G KFQ+FCQAG +GLITAIDRFEP+R FRLS
Sbjct: 273 GRAARNKLIKHNLRLVLFVIKKYFQDFANGTKFQDFCQAGVKGLITAIDRFEPKRRFRLS 332

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I RSMTL+SFT+V FG+ES+R EIQK KLEL F+L RQP E E  ++VRI
Sbjct: 333 TYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEIQKAKLELWFQLKRQPMEDEIIEKVRI 392

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY++V + S+PV SLH++H  TQEEFI GI D+D   GGD  RQ A           
Sbjct: 393 SPERYHEVTRASKPVLSLHSRHKTTQEEFIGGIADVD---GGDDRRQSALLRLALDDVLD 449

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HPTRVDYLRR
Sbjct: 450 SLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYLRR 509

Query: 98  YI 93
           Y+
Sbjct: 510 YV 511


>gb|EMJ20209.1| hypothetical protein PRUPE_ppa004259mg [Prunus persica]
          Length = 519

 Score =  319 bits (817), Expect = 9e-85
 Identities = 163/242 (67%), Positives = 190/242 (78%)
 Frame = -2

Query: 818  GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
            G+AAR+KLIKHNLRLVLFV+NKYF + A G KFQ+ CQAG +GLITAIDRFEP+R FRLS
Sbjct: 278  GRAARSKLIKHNLRLVLFVMNKYFQDFANGPKFQDLCQAGVKGLITAIDRFEPKRSFRLS 337

Query: 638  TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
            TYGLFWIRH+I RSMTL+SFT+V FG+ESVR EIQK KL + F L R PTE E  ++V I
Sbjct: 338  TYGLFWIRHAIIRSMTLSSFTRVSFGLESVRAEIQKAKLGMLFALKRMPTEDEIIEKVGI 397

Query: 458  SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
            S ERY++V++ S+PVFSLH++H  TQEEFINGITD+DG V GD  ++PA           
Sbjct: 398  SPERYHEVMRASKPVFSLHSRHTTTQEEFINGITDVDG-VEGDNRQKPALLRLALDDVLD 456

Query: 278  XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
             LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HP RVDYLRR
Sbjct: 457  SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARVDYLRR 516

Query: 98   YI 93
            Y+
Sbjct: 517  YV 518


>ref|XP_004234180.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform 2 [Solanum
           lycopersicum]
          Length = 487

 Score =  319 bits (817), Expect = 9e-85
 Identities = 165/242 (68%), Positives = 188/242 (77%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFV+NKYF + A   +FQ+ CQAG +GLITAIDRFEP R FRLS
Sbjct: 246 GRAARNKLIKHNLRLVLFVMNKYFQDFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLS 305

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I R MT +SFTKVPFG+ES+R EIQK KLEL FEL R PT+ E   RV  
Sbjct: 306 TYGLFWIRHAIIRYMTTSSFTKVPFGLESIRVEIQKAKLELLFELQRIPTDDEIIKRVGF 365

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY++V+K S+P+FSLHA++  TQEE INGITD+DG V GDK +QPA           
Sbjct: 366 SPERYHEVMKVSKPIFSLHARNKTTQEELINGITDVDG-VDGDKRKQPALLRLALDDVLD 424

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HPTRVDY+RR
Sbjct: 425 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRR 484

Query: 98  YI 93
           YI
Sbjct: 485 YI 486


>ref|XP_004234179.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform 1 [Solanum
           lycopersicum]
          Length = 516

 Score =  319 bits (817), Expect = 9e-85
 Identities = 165/242 (68%), Positives = 188/242 (77%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFV+NKYF + A   +FQ+ CQAG +GLITAIDRFEP R FRLS
Sbjct: 275 GRAARNKLIKHNLRLVLFVMNKYFQDFANASRFQDLCQAGVKGLITAIDRFEPNRKFRLS 334

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I R MT +SFTKVPFG+ES+R EIQK KLEL FEL R PT+ E   RV  
Sbjct: 335 TYGLFWIRHAIIRYMTTSSFTKVPFGLESIRVEIQKAKLELLFELQRIPTDDEIIKRVGF 394

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY++V+K S+P+FSLHA++  TQEE INGITD+DG V GDK +QPA           
Sbjct: 395 SPERYHEVMKVSKPIFSLHARNKTTQEELINGITDVDG-VDGDKRKQPALLRLALDDVLD 453

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HPTRVDY+RR
Sbjct: 454 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPTRVDYVRR 513

Query: 98  YI 93
           YI
Sbjct: 514 YI 515


>ref|XP_006593758.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X3 [Glycine
           max]
          Length = 488

 Score =  318 bits (815), Expect = 1e-84
 Identities = 160/242 (66%), Positives = 193/242 (79%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFVINKYF + A+G +FQ+ CQAG +GLITAIDRFEP+R  +LS
Sbjct: 247 GRAARNKLIKHNLRLVLFVINKYFQDFASGPRFQDLCQAGVKGLITAIDRFEPKRRLQLS 306

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TY LFWIRHSI RS+TL+SFT+VPFG+E VR +IQ+ KL+L+FEL R PTE+E  +R+ I
Sbjct: 307 TYSLFWIRHSIVRSITLSSFTRVPFGLERVRVDIQRTKLKLTFELQRSPTEEELVERIGI 366

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           SLERY++V+K S+P+ SLH++HI TQEE+INGITD+DG V GD  RQ A           
Sbjct: 367 SLERYHEVMKASKPILSLHSRHITTQEEYINGITDVDG-VNGDNRRQLAVLRLALDDVLD 425

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISRE+VR           HP R+DYLRR
Sbjct: 426 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRR 485

Query: 98  YI 93
           Y+
Sbjct: 486 YV 487


>ref|XP_003541542.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X1 [Glycine
           max] gi|571496981|ref|XP_006593757.1| PREDICTED: RNA
           polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X2 [Glycine
           max]
          Length = 512

 Score =  318 bits (815), Expect = 1e-84
 Identities = 160/242 (66%), Positives = 193/242 (79%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFVINKYF + A+G +FQ+ CQAG +GLITAIDRFEP+R  +LS
Sbjct: 271 GRAARNKLIKHNLRLVLFVINKYFQDFASGPRFQDLCQAGVKGLITAIDRFEPKRRLQLS 330

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TY LFWIRHSI RS+TL+SFT+VPFG+E VR +IQ+ KL+L+FEL R PTE+E  +R+ I
Sbjct: 331 TYSLFWIRHSIVRSITLSSFTRVPFGLERVRVDIQRTKLKLTFELQRSPTEEELVERIGI 390

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           SLERY++V+K S+P+ SLH++HI TQEE+INGITD+DG V GD  RQ A           
Sbjct: 391 SLERYHEVMKASKPILSLHSRHITTQEEYINGITDVDG-VNGDNRRQLAVLRLALDDVLD 449

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISRE+VR           HP R+DYLRR
Sbjct: 450 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREIVRKHEVKALMKLKHPARLDYLRR 509

Query: 98  YI 93
           Y+
Sbjct: 510 YV 511


>ref|NP_197800.1| RNA polymerase sigma factor 5 [Arabidopsis thaliana]
           gi|75267675|sp|Q9ZNX9.1|SIGE_ARATH RecName: Full=RNA
           polymerase sigma factor sigE,
           chloroplastic/mitochondrial; Short=Sigma factor E;
           Short=Sigma-E; AltName: Full=RNA polymerase sigma factor
           sig5; Short=Atsig5; Short=Sigma factor 5; Flags:
           Precursor gi|4033838|emb|CAA77213.1| sigma-like factor
           [Arabidopsis thaliana] gi|4972299|dbj|BAA78109.1| RNA
           polymerase sigma subunit SigE [Arabidopsis thaliana]
           gi|10178160|dbj|BAB11572.1| sigma-like factor
           [Arabidopsis thaliana] gi|222423237|dbj|BAH19595.1|
           AT5G24120 [Arabidopsis thaliana]
           gi|332005876|gb|AED93259.1| RNA polymerase sigma factor
           5 [Arabidopsis thaliana]
          Length = 517

 Score =  317 bits (812), Expect = 3e-84
 Identities = 163/242 (67%), Positives = 189/242 (78%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFV+NKYF E   G KFQ+ CQAG RGLITAIDRFEP+R FRLS
Sbjct: 276 GRAARNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLS 335

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I RSMT ++FT+VPFG+ESVR EI K K EL FE+GR PTE E  +R++I
Sbjct: 336 TYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKI 395

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           + ERY +V++ ++PV SL++KH VTQEEFINGITD+DG VG +  RQPA           
Sbjct: 396 TPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDG-VGANNSRQPALLRLALDDVLD 454

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           H  RVDYLR+
Sbjct: 455 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQ 514

Query: 98  YI 93
           YI
Sbjct: 515 YI 516


>gb|ESW33340.1| hypothetical protein PHAVU_001G061400g [Phaseolus vulgaris]
          Length = 511

 Score =  316 bits (810), Expect = 6e-84
 Identities = 162/242 (66%), Positives = 188/242 (77%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           GQAARNKLIKHNLRLVLFVINKYF + A+G +FQ+ CQAG +GLITAIDRFE +R  +LS
Sbjct: 270 GQAARNKLIKHNLRLVLFVINKYFQDFASGPRFQDLCQAGVKGLITAIDRFESKRRLQLS 329

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TY LFWIRHSI RS+TL+S T+VPFG++ VR +I + KLEL FEL R PTEKE  +R+ I
Sbjct: 330 TYSLFWIRHSIVRSITLSSLTRVPFGLDRVRADIHRAKLELRFELQRSPTEKEVVERIGI 389

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY DV+K S+P+ SLH++HIVTQEEFINGITD+DG V GD  RQ A           
Sbjct: 390 SPERYYDVLKASKPIISLHSRHIVTQEEFINGITDLDG-VDGDNRRQLAVLRLALDDVLD 448

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           HP R+DYLRR
Sbjct: 449 SLKPKESLVMRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHPARLDYLRR 508

Query: 98  YI 93
           Y+
Sbjct: 509 YV 510


>ref|XP_006581623.1| PREDICTED: RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X2 [Glycine
           max]
          Length = 507

 Score =  316 bits (810), Expect = 6e-84
 Identities = 162/242 (66%), Positives = 188/242 (77%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           GQAARNKLIKHNLRLVLFVINKYF + A+G +FQ+ CQAG +GLITAIDRFEP R FRLS
Sbjct: 266 GQAARNKLIKHNLRLVLFVINKYFTDFASGPRFQDLCQAGVKGLITAIDRFEPNRRFRLS 325

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TY LFWIRH+I RSMTL++FT+VPFG+ESVR EIQK K EL+FEL R PTE+E  +RV I
Sbjct: 326 TYSLFWIRHAIIRSMTLSNFTRVPFGLESVRAEIQKAKTELTFELQRSPTEEEIIERVHI 385

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY+DV+K S+ + SL+++H  TQEEFINGI D DG V GD  +QPA           
Sbjct: 386 SPERYHDVIKASKSILSLNSRHTTTQEEFINGIVDDDG-VNGDNRKQPALLRLALDDVLD 444

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQR+GLDGKG+RTLGEIAGNLNISREMVR           H  R+DYLRR
Sbjct: 445 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHSARLDYLRR 504

Query: 98  YI 93
           Y+
Sbjct: 505 YV 506


>ref|XP_006422121.1| hypothetical protein CICLE_v10004760mg [Citrus clementina]
           gi|567858878|ref|XP_006422122.1| hypothetical protein
           CICLE_v10004760mg [Citrus clementina]
           gi|568874930|ref|XP_006490565.1| PREDICTED: RNA
           polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X1 [Citrus
           sinensis] gi|568874932|ref|XP_006490566.1| PREDICTED:
           RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X2 [Citrus
           sinensis] gi|568874934|ref|XP_006490567.1| PREDICTED:
           RNA polymerase sigma factor sigE,
           chloroplastic/mitochondrial-like isoform X3 [Citrus
           sinensis] gi|557523994|gb|ESR35361.1| hypothetical
           protein CICLE_v10004760mg [Citrus clementina]
           gi|557523995|gb|ESR35362.1| hypothetical protein
           CICLE_v10004760mg [Citrus clementina]
          Length = 513

 Score =  315 bits (807), Expect = 1e-83
 Identities = 162/242 (66%), Positives = 190/242 (78%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFVI KYF + A G +FQ+ CQAG +GLITAIDRFEP+R FRLS
Sbjct: 272 GRAARNKLIKHNLRLVLFVIKKYFQDFANGPRFQDLCQAGVKGLITAIDRFEPKRRFRLS 331

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I RSMT++SFT+VPFG+ESVR EIQ+ KLEL FEL R PT++E    V I
Sbjct: 332 TYGLFWIRHAIIRSMTVSSFTRVPFGLESVRGEIQRAKLELLFELKRVPTDEEIIQGVNI 391

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           S ERY +V+K S+P+ SLH++H VTQEEFINGITD+DG V  +  RQPA           
Sbjct: 392 SPERYREVMKASKPILSLHSRHGVTQEEFINGITDVDG-VENENQRQPALLRLALDDVLD 450

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQR+GLDGKG+RTLGEIAGNLNISREMVR           HPTRVDYLR+
Sbjct: 451 SLKPKESLVIRQRFGLDGKGDRTLGEIAGNLNISREMVRKHEVKGLMKLKHPTRVDYLRQ 510

Query: 98  YI 93
           ++
Sbjct: 511 HM 512


>ref|XP_002874170.1| hypothetical protein ARALYDRAFT_489269 [Arabidopsis lyrata subsp.
           lyrata] gi|297320007|gb|EFH50429.1| hypothetical protein
           ARALYDRAFT_489269 [Arabidopsis lyrata subsp. lyrata]
          Length = 517

 Score =  315 bits (807), Expect = 1e-83
 Identities = 163/242 (67%), Positives = 189/242 (78%)
 Frame = -2

Query: 818 GQAARNKLIKHNLRLVLFVINKYFPEIATGHKFQEFCQAGARGLITAIDRFEPRRGFRLS 639
           G+AARNKLIKHNLRLVLFV+NKYF +   G KFQ+ CQAG RGLITAIDRFEP+R FRLS
Sbjct: 276 GRAARNKLIKHNLRLVLFVMNKYFHDFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLS 335

Query: 638 TYGLFWIRHSISRSMTLASFTKVPFGIESVRQEIQKGKLELSFELGRQPTEKETADRVRI 459
           TYGLFWIRH+I RSMT ++FT+VPFG+ESVR EI K K EL FELGR PTE E  +R++I
Sbjct: 336 TYGLFWIRHAIIRSMTTSNFTRVPFGLESVRVEIFKTKTELLFELGRLPTEDEVVERLKI 395

Query: 458 SLERYNDVVKTSRPVFSLHAKHIVTQEEFINGITDIDGSVGGDKHRQPAXXXXXXXXXXX 279
           + ERY +V++ ++PV SL++KH VTQEEFINGITD+DG VG +  RQPA           
Sbjct: 396 TPERYREVLRAAKPVLSLNSKHSVTQEEFINGITDVDG-VGANNSRQPALLRLALDDVLD 454

Query: 278 XLKPKESLVLRQRYGLDGKGERTLGEIAGNLNISREMVRXXXXXXXXXXXHPTRVDYLRR 99
            LKPKESLV+RQRYGLDGKG+RTLGEIAGNLNISREMVR           H  RVDYLR+
Sbjct: 455 SLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVKALMKLKHQARVDYLRQ 514

Query: 98  YI 93
           YI
Sbjct: 515 YI 516