BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00025094
         (831 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004293058.1| PREDICTED: pentatricopeptide repeat-containi...    72   2e-10
gb|EOY11208.1| Pentatricopeptide repeat (PPR) superfamily protei...    72   3e-10
gb|EOY11207.1| Pentatricopeptide repeat superfamily protein isof...    72   3e-10
ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containi...    69   2e-09
emb|CBI29931.3| unnamed protein product [Vitis vinifera]               69   2e-09
ref|XP_002525440.1| pentatricopeptide repeat-containing protein,...    64   5e-08
ref|XP_004485865.1| PREDICTED: pentatricopeptide repeat-containi...    60   9e-07
ref|XP_006479094.1| PREDICTED: pentatricopeptide repeat-containi...    58   4e-06

>ref|XP_004293058.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Fragaria vesca subsp. vesca]
          Length = 1277

 Score = 72.0 bits (175), Expect = 2e-10
 Identities = 59/176 (33%), Positives = 84/176 (47%), Gaps = 5/176 (2%)
 Frame = +2

Query: 311 AACHAQDESIEGEVEGHPTETMSKRDAFTVLNEVDVG-VRIGRSSHASLLDCIPNVGSLV 487
           A  H  DE I  + EG P           +L+ ++   +R    ++  LL    + GSL+
Sbjct: 263 ANAHVLDEDINHQNEGGPK-------GIDLLHSMESRCIRANSQTYIWLLKGCLSSGSLL 315

Query: 488 DARETHTRNLKKPCHFVGTPQNCQVDSYLAFGD--STINSLDDMPHRTLS--NHKIVGLL 655
           +AR  H+R LK          N  V  YLA GD  S +   DD+P+R+L   N+ I G L
Sbjct: 316 EARNLHSRVLKLGFGGDIEISNLFVGVYLANGDACSAVKVFDDLPYRSLFSWNNIIHGFL 375

Query: 656 QRKEYNKVLSWFMRIMRNCGDPHSVVIASALRACCGNNNYWFLGQQIHAKTIRYGF 823
            +K   +VL +F ++M     P     A  LRAC G N      +QIHA+ IR+GF
Sbjct: 376 AKKLTGQVLGFFSQMMAENVYPDETTFAGVLRACGGGNASIQYVEQIHARIIRHGF 431


>gb|EOY11208.1| Pentatricopeptide repeat (PPR) superfamily protein isoform 2
           [Theobroma cacao]
          Length = 1072

 Score = 71.6 bits (174), Expect = 3e-10
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 7/185 (3%)
 Frame = +2

Query: 290 RKVSSLYAAC---HAQDESIEGEVEGHPTETMSKRDAFTVLNEVDVGVRIGRSSHASLLD 460
           RK S L  AC   +A   S + E+     E  SK  +F    E + GV+  + +   LL+
Sbjct: 44  RKWSRLRLACFNTNAISNSFD-ELSIEENEGNSKEVSFLYWME-NRGVKANQQTFLWLLE 101

Query: 461 CIPNVGSLVDARETHTRNLKKPCHFVGTPQNCQVDSYLAFGD--STINSLDDMPHRTLS- 631
              N GS+   ++ H + LK             +D ++A GD  + IN  DDMP R +  
Sbjct: 102 GCLNSGSIEQGKKLHGKILKMGFSKEHVLSEKLMDLHIASGDLDAAINVFDDMPKRNVFS 161

Query: 632 -NHKIVGLLQRKEYNKVLSWFMRIMRNCGDPHSVVIASALRACCGNNNYWFLGQQIHAKT 808
            N  I G + +K  NKVL ++ R++    +P+    A  L+AC G+N ++   +QIHA+ 
Sbjct: 162 WNKMISGFISKKLTNKVLRFYSRMVVENVNPNERTFAGILKACSGSNVWFEYVEQIHARI 221

Query: 809 IRYGF 823
           IR+GF
Sbjct: 222 IRHGF 226


>gb|EOY11207.1| Pentatricopeptide repeat superfamily protein isoform 1 [Theobroma
           cacao]
          Length = 1389

 Score = 71.6 bits (174), Expect = 3e-10
 Identities = 59/185 (31%), Positives = 92/185 (49%), Gaps = 7/185 (3%)
 Frame = +2

Query: 290 RKVSSLYAAC---HAQDESIEGEVEGHPTETMSKRDAFTVLNEVDVGVRIGRSSHASLLD 460
           RK S L  AC   +A   S + E+     E  SK  +F    E + GV+  + +   LL+
Sbjct: 44  RKWSRLRLACFNTNAISNSFD-ELSIEENEGNSKEVSFLYWME-NRGVKANQQTFLWLLE 101

Query: 461 CIPNVGSLVDARETHTRNLKKPCHFVGTPQNCQVDSYLAFGD--STINSLDDMPHRTLS- 631
              N GS+   ++ H + LK             +D ++A GD  + IN  DDMP R +  
Sbjct: 102 GCLNSGSIEQGKKLHGKILKMGFSKEHVLSEKLMDLHIASGDLDAAINVFDDMPKRNVFS 161

Query: 632 -NHKIVGLLQRKEYNKVLSWFMRIMRNCGDPHSVVIASALRACCGNNNYWFLGQQIHAKT 808
            N  I G + +K  NKVL ++ R++    +P+    A  L+AC G+N ++   +QIHA+ 
Sbjct: 162 WNKMISGFISKKLTNKVLRFYSRMVVENVNPNERTFAGILKACSGSNVWFEYVEQIHARI 221

Query: 809 IRYGF 823
           IR+GF
Sbjct: 222 IRHGF 226


>ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
 Frame = +2

Query: 419 GVRIGRSSHASLLDCIPNVGSLVDARETHTRNLKKPCHFVGTPQNCQVDSYLAFG--DST 592
           G+R    ++  L +   N GSL+DA++ H R  K          +  +D YLA G  D+ 
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 593 INSLDDMPHRTLS--NHKIVGLLQRKEYNKVLSWFMRIMRNCGDPHSVVIASALRACCGN 766
           I   DD+P   +S  N  I GLL +K  ++VL  F  ++     P     AS LRAC G 
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 767 NNYWFLGQQIHAKTIRYGF 823
              + + +QIHAK I +GF
Sbjct: 125 KAPFQVTEQIHAKIIHHGF 143


>emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score = 68.9 bits (167), Expect = 2e-09
 Identities = 48/139 (34%), Positives = 69/139 (49%), Gaps = 4/139 (2%)
 Frame = +2

Query: 419 GVRIGRSSHASLLDCIPNVGSLVDARETHTRNLKKPCHFVGTPQNCQVDSYLAFG--DST 592
           G+R    ++  L +   N GSL+DA++ H R  K          +  +D YLA G  D+ 
Sbjct: 5   GIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGEVDNA 64

Query: 593 INSLDDMPHRTLS--NHKIVGLLQRKEYNKVLSWFMRIMRNCGDPHSVVIASALRACCGN 766
           I   DD+P   +S  N  I GLL +K  ++VL  F  ++     P     AS LRAC G 
Sbjct: 65  IKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRACSGG 124

Query: 767 NNYWFLGQQIHAKTIRYGF 823
              + + +QIHAK I +GF
Sbjct: 125 KAPFQVTEQIHAKIIHHGF 143


>ref|XP_002525440.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223535253|gb|EEF36930.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 878

 Score = 64.3 bits (155), Expect = 5e-08
 Identities = 54/173 (31%), Positives = 83/173 (47%), Gaps = 4/173 (2%)
 Frame = +2

Query: 314 ACHAQDESIEGEVEGHPTETMSKRDAFTVLNEVDVGVRIGRSSHASLLDCIPNVGSLVDA 493
           AC+A  E  + E E    E+    D   V++E   G R    ++  LLD   N  S +D 
Sbjct: 53  ACYAFAEISDQENE----ESARGIDFLHVVDER--GSRAKSQTYLWLLDFCLNSASFLDC 106

Query: 494 RETHTRNLKKPCHFVGTPQNCQVDSYLAFGD--STINSLDDMPHRTLS--NHKIVGLLQR 661
           ++ H++ LK          +  ++ Y A GD  S +   DDMP R+L   N  + GL+  
Sbjct: 107 KKLHSKILKIGFDKESVLCDKLIEFYFAVGDLNSVVKVFDDMPSRSLMTWNKVLSGLVAN 166

Query: 662 KEYNKVLSWFMRIMRNCGDPHSVVIASALRACCGNNNYWFLGQQIHAKTIRYG 820
           K  N+VL  F +++    +P+ V +AS LRA    N  ++  +QIHA  I  G
Sbjct: 167 KTSNRVLGLFAQMVEENVNPNEVTVASVLRAYGSGNVAFYYVEQIHASIISRG 219


>ref|XP_004485865.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cicer arietinum]
          Length = 1071

 Score = 60.1 bits (144), Expect = 9e-07
 Identities = 46/139 (33%), Positives = 64/139 (46%), Gaps = 4/139 (2%)
 Frame = +2

Query: 419 GVRIGRSSHASLLDCIPNVGSLVDARETHTRNLKKPCHFVGTPQNCQVDSYLAFGD--ST 592
           GVR    +   LL+   N GS  D  + H + LK   +         +D YLAFGD  + 
Sbjct: 87  GVRANSQTFLWLLEGCLNSGSFSDGWKLHGKILKMGFYAEVILCERLMDFYLAFGDLDNA 146

Query: 593 INSLDDMPHRTLS--NHKIVGLLQRKEYNKVLSWFMRIMRNCGDPHSVVIASALRACCGN 766
           +   D+M  R+LS  N  +   +  K    V   F R+M+   +P     A  LR C G 
Sbjct: 147 VKMFDEMSVRSLSCWNKILHRFVADKLTGCVTRLFQRMMKENVEPDEKTFAGVLRGCSGT 206

Query: 767 NNYWFLGQQIHAKTIRYGF 823
             Y+   +QIHAKTI +GF
Sbjct: 207 AVYFRFVEQIHAKTITHGF 225


>ref|XP_006479094.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like isoform X1 [Citrus sinensis]
           gi|568850820|ref|XP_006479095.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g13650-like isoform X2 [Citrus sinensis]
           gi|568850822|ref|XP_006479096.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g13650-like isoform X3 [Citrus sinensis]
          Length = 1077

 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 56/178 (31%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
 Frame = +2

Query: 311 AACHAQDESIEGEVEGHPTETMSKRDAFTVLNEVDVGVRIGRSSHASLLDCIPNVGSLVD 490
           A C A DE  + E     TE  SK      + E + G++    +   LL+   + GSL++
Sbjct: 62  AVCRACDELNDQE-----TEWQSKGIELLRVME-ERGIQANSQTFVWLLEGCLSYGSLLE 115

Query: 491 ARETHTRNLKKPCHFVGTPQNCQ--VDSYLAFGD--STINSLDDMPHRTLS--NHKIVGL 652
           A++ H + LK    F G    C    + YLA GD  S +N  DDM  RT+   N  I G 
Sbjct: 116 AKKIHGKILK--LGFDGEQVLCDKIFNIYLASGDLDSAMNIFDDMSKRTVFSWNKLISGF 173

Query: 653 LQRKEYNKVLSWFMRIMRNCGDPHSVVIASALRACCGNNNYWF-LGQQIHAKTIRYGF 823
           + +K   +VL  F++++ +   P+       LRAC G+ N       QIH   I +GF
Sbjct: 174 VSKKLSGRVLGLFLQMIDDDVIPNEATFVGVLRACIGSGNVAVQCVNQIHGLIISHGF 231