BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00025002
         (1856 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD ...   387   e-105
emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]   387   e-105
ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [A...   384   e-103
ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citr...   375   e-101
ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-...   374   e-100
gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus pe...   373   e-100
gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobrom...   369   2e-99
ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-...   362   4e-97
dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsi...   355   4e-95
ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp....   355   5e-95
ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis tha...   354   6e-95
emb|CAB83107.1| sigma factor 3 [Sinapis alba]                         353   1e-94
ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Caps...   347   1e-92
ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-...   347   1e-92
ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [...   347   1e-92
ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Popu...   347   1e-92
ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-...   345   5e-92
ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-...   345   5e-92
ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutr...   340   9e-91
emb|CAD20832.1| sigma factor [Spinacia oleracea]                      336   2e-89

>ref|XP_002275831.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|296081598|emb|CBI20603.3| unnamed protein product
            [Vitis vinifera]
          Length = 561

 Score =  387 bits (994), Expect = e-105
 Identities = 215/504 (42%), Positives = 309/504 (61%), Gaps = 13/504 (2%)
 Frame = -1

Query: 1643 YKAKACSFGQVQS-------VERIKVNLDNCTSKICQDV--AKQILKGEDSSFIHXXXXX 1491
            +K  ACS G +Q+       +E +K+ +  C+      +  A Q   GED S        
Sbjct: 62   FKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQA 121

Query: 1490 XXXXXXXXLMENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIR 1314
                    L+EN+D +E++   ++M+RLE+DI+  L RLGA+KLF  C S+ + T T   
Sbjct: 122  SKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFD 181

Query: 1313 SSNLVNKHLDAYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGH 1134
              +   +H+         D+  D +VV S               K        +P+++  
Sbjct: 182  LFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIR 241

Query: 1133 KDE---LFSLRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGK 963
            K       S  KR L +       +KR + AKNE+EMS GVK +ANLE++   LEE++G 
Sbjct: 242  KGPGRPSVSTVKRTLNS------RRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGH 295

Query: 962  PPSLTRWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQA 783
              SL+ WAEAAG+++K L+ +LQFGWYCRD+L+RST SLV+++A+NYRGMG+AF+D++QA
Sbjct: 296  VASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQA 355

Query: 782  GYVGVLNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVK 603
            G +GVL G ER+D  KGYRFSTYVQYWIRKS+  ++A H+R VK+P  +   I QIQK +
Sbjct: 356  GNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKAR 415

Query: 602  RNFHTSEGKYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTS 423
            +  + S G+YP+D EI + TGLSLA +R A  C + VGS ++  +D W  T +E T DTS
Sbjct: 416  KALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTS 475

Query: 422  VKSPYEFIGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWI 243
            +KSP E   ++  R+ I NLL+ L PRERQ+L LRYG G+ + +SLEEIGR  +VS+EWI
Sbjct: 476  IKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWI 535

Query: 242  RKIEKEALSKIRSQEMQKRLSHYL 171
            RK+EK AL+ +R +E+ + L HY+
Sbjct: 536  RKLEKTALANLRDEEICQNLRHYV 559


>emb|CAN83254.1| hypothetical protein VITISV_036980 [Vitis vinifera]
          Length = 611

 Score =  387 bits (994), Expect = e-105
 Identities = 215/504 (42%), Positives = 309/504 (61%), Gaps = 13/504 (2%)
 Frame = -1

Query: 1643 YKAKACSFGQVQS-------VERIKVNLDNCTSKICQDV--AKQILKGEDSSFIHXXXXX 1491
            +K  ACS G +Q+       +E +K+ +  C+      +  A Q   GED S        
Sbjct: 112  FKPFACSSGALQTFENDYSAMEAMKMKIGKCSHGDLFKIVNASQAPIGEDISASVAGLQA 171

Query: 1490 XXXXXXXXLMENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIR 1314
                    L+EN+D +E++   ++M+RLE+DI+  L RLGA+KLF  C S+ + T T   
Sbjct: 172  SKASQFSLLLENLDILEEMFADSNMVRLERDIMVQLGRLGALKLFQICLSRTLKTSTSFD 231

Query: 1313 SSNLVNKHLDAYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGH 1134
              +   +H+         D+  D +VV S               K        +P+++  
Sbjct: 232  LFSAPTEHIRECQTNGTVDDHLDKVVVRSGKKEERKSKRERALEKADNIYAFPLPSKTIR 291

Query: 1133 KDE---LFSLRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGK 963
            K       S  KR L +       +KR + AKNE+EMS GVK +ANLE++   LEE++G 
Sbjct: 292  KGPGRPSVSTVKRTLNS------RRKRLMNAKNEAEMSKGVKLVANLERIRATLEEEIGH 345

Query: 962  PPSLTRWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQA 783
              SL+ WAEAAG+++K L+ +LQFGWYCRD+L+RST SLV+++A+NYRGMG+AF+D++QA
Sbjct: 346  VASLSNWAEAAGVDKKVLQQQLQFGWYCRDELLRSTHSLVLYIARNYRGMGVAFEDILQA 405

Query: 782  GYVGVLNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVK 603
            G +GVL G ER+D  KGYRFSTYVQYWIRKS+  ++A H+R VK+P  +   I QIQK +
Sbjct: 406  GNLGVLQGAERFDHTKGYRFSTYVQYWIRKSMSTLVARHARGVKIPFTLNRAIGQIQKAR 465

Query: 602  RNFHTSEGKYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTS 423
            +  + S G+YP+D EI + TGLSLA +R A  C + VGS ++  +D W  T +E T DTS
Sbjct: 466  KALYKSHGRYPDDNEIAKFTGLSLAKIRSAGNCLRVVGSTDQSFQDCWGATILEFTPDTS 525

Query: 422  VKSPYEFIGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWI 243
            +KSP E   ++  R+ I NLL+ L PRERQ+L LRYG G+ + +SLEEIGR  +VS+EWI
Sbjct: 526  IKSPEEGFMQQCKRKDIHNLLKGLDPRERQILVLRYGFGEQQRKSLEEIGRRFNVSKEWI 585

Query: 242  RKIEKEALSKIRSQEMQKRLSHYL 171
            RK+EK AL+ +R +E+ + L HY+
Sbjct: 586  RKLEKTALANLRDEEICQNLRHYV 609


>ref|XP_006853783.1| hypothetical protein AMTR_s00056p00209700 [Amborella trichopoda]
            gi|548857444|gb|ERN15250.1| hypothetical protein
            AMTR_s00056p00209700 [Amborella trichopoda]
          Length = 529

 Score =  384 bits (985), Expect = e-103
 Identities = 203/438 (46%), Positives = 289/438 (65%), Gaps = 8/438 (1%)
 Frame = -1

Query: 1460 ENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTET-IIRSSNLVNKHLD 1284
            EN+++IE +IV +   RLE++IL H+ RLGA+KLF    S+ + +  I+  +    +H  
Sbjct: 102  ENLEKIEGIIVDSGNARLEREILLHIERLGALKLFHAFLSRTLKDPKILDVTGTCPEHAM 161

Query: 1283 AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSLRKR 1104
              P     DE+ D  +V S                   R++ ++  E      L  ++K 
Sbjct: 162  VQPM----DEQADGYIVSSGKKVERKAQR--------ERALKKVTDEPIVCSSLKRVKKS 209

Query: 1103 GLGNFAGLS------GSKKREVI-AKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTR 945
                 A L+       SK R  + A++E EMS GV+E+A LEK+  NLEE++G+  S + 
Sbjct: 210  TKSINAALTHKGHPGNSKSRSHLRAQSEVEMSRGVQEVAKLEKIRANLEENLGRDASFSV 269

Query: 944  WAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVL 765
            WAEAAG+N+K L+ +L FGW+CRDKL+RSTR LV+++AK+YRG GI F+DL+QAG +GVL
Sbjct: 270  WAEAAGINEKVLKQQLHFGWFCRDKLLRSTRPLVMYLAKSYRGRGIGFEDLLQAGSLGVL 329

Query: 764  NGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTS 585
             G ER+D  +GYRFSTYVQYWIRKS+ A++A HSR V++P+ +  ++NQ  K KR  H  
Sbjct: 330  QGAERFDHTRGYRFSTYVQYWIRKSLSALVARHSRGVQIPMALNKVLNQTVKAKRALHQM 389

Query: 584  EGKYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYE 405
             G++P + EI E TGLSL  VRLA++C +  GSI++ + D W  T+ME+TADT +++P +
Sbjct: 390  HGRHPREVEIAEFTGLSLVNVRLANKCLRVHGSIDQRIGDNWGATYMEVTADTFIETPEK 449

Query: 404  FIGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKE 225
             + K+H RE I  +L  LHPRE+QVL LRYGL DGRC+SLEEIGRL +V++EWIRKIEK 
Sbjct: 450  MVMKQHMREAIHEVLVNLHPREKQVLMLRYGLWDGRCKSLEEIGRLYNVTKEWIRKIEKM 509

Query: 224  ALSKIRSQEMQKRLSHYL 171
            AL K+R +E+Q  L+ +L
Sbjct: 510  ALEKVRKEEVQCNLNFFL 527


>ref|XP_006450763.1| hypothetical protein CICLE_v10007968mg [Citrus clementina]
            gi|557553989|gb|ESR64003.1| hypothetical protein
            CICLE_v10007968mg [Citrus clementina]
          Length = 534

 Score =  375 bits (964), Expect = e-101
 Identities = 215/540 (39%), Positives = 320/540 (59%), Gaps = 9/540 (1%)
 Frame = -1

Query: 1763 FSSSSSVYLVHTLRDREVCVKFGLL--LHNTDEGKLSHGTATYKAKACSFGQVQSVERIK 1590
            F++SS      ++R RE       L  L    E   S+     KA  CSF   Q+VE   
Sbjct: 20   FTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDY 79

Query: 1589 VNLDNCTSKICQDVAKQILKGEDSSFIHXXXXXXXXXXXXXLMENIDRIEDLIVGADMIR 1410
               +    K    + +      D   +               MEN+D +E     +D +R
Sbjct: 80   SETEEIRQKSTSCIGQDASSRSDFRLL---------------MENLDVLESTFADSDALR 124

Query: 1409 LEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDAYPFELRFDEKKD----N 1242
            LE++IL  L +LGA+KLF +  S+     I+++SN+++   D +  E + ++ +D     
Sbjct: 125  LEREILQQLGKLGALKLFNSHLSR-----IVKTSNVLDLS-DVHTEEQKMNDSRDYHMGK 178

Query: 1241 IVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTES---GHKDELFSLRKRGLGNFAGLSGS 1071
            I+V S               +    S+L +P+E+   G K       +R L +       
Sbjct: 179  ILVPSKRKGKRKLKTARVSEESIETSLLSLPSEALQEGLKQPTIFSPERALNSRG----- 233

Query: 1070 KKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWAEAAGLNQKTLRSRLQF 891
             +R +IA+NE+EMS GV+ +ANLE++   LE++ GK  SL  WA+AAG++++ L+  L F
Sbjct: 234  -RRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAASLNCWAQAAGVSERVLKQHLAF 292

Query: 890  GWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERYDIEKGYRFSTYV 711
            GWYCR++LI+STR LV+F+A+NYRG+GI F DL+QAG VGVL G ER+D  +GY+FSTYV
Sbjct: 293  GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352

Query: 710  QYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPNDEEITELTGLSL 531
            QYWIRKSI  M+A H+R +K+P ++   I++IQK ++    S GKYP D EI + TGLSL
Sbjct: 353  QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412

Query: 530  AYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFIGKEHAREQILNLLQTL 351
            A +R AS+C + VGSI++++ D     ++E   D SVKSP E + ++H ++ +  +L++L
Sbjct: 413  AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472

Query: 350  HPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEALSKIRSQEMQKRLSHYL 171
              RERQVL LRYGL D R +SLEEIG+L HVS+EWIRK+EK+A++K+R  E  + LSH+L
Sbjct: 473  DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532


>ref|XP_006475980.1| PREDICTED: RNA polymerase sigma factor sigC-like [Citrus sinensis]
          Length = 534

 Score =  374 bits (959), Expect = e-100
 Identities = 214/540 (39%), Positives = 318/540 (58%), Gaps = 9/540 (1%)
 Frame = -1

Query: 1763 FSSSSSVYLVHTLRDREVCVKFGLL--LHNTDEGKLSHGTATYKAKACSFGQVQSVERIK 1590
            F++SS      ++R RE       L  L    E   S+     KA  CSF   Q+VE   
Sbjct: 20   FTTSSCRLSSTSVRGREGSFNSARLSFLSTISEDSASYFQDPVKAYTCSFVNTQTVENDY 79

Query: 1589 VNLDNCTSKICQDVAKQILKGEDSSFIHXXXXXXXXXXXXXLMENIDRIEDLIVGADMIR 1410
               +    K    + +      D   +               MEN+D +E     +D +R
Sbjct: 80   SETEEIRQKSTSCIGQDASSRSDFRLL---------------MENLDVLESTFADSDALR 124

Query: 1409 LEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDAYPFELRFDEKKD----N 1242
            LE++IL  L +LGA+KLF +  S+     I+++SN+++   D +  E + D+ +D     
Sbjct: 125  LEREILQQLGKLGALKLFNSHLSR-----IVKTSNVLDLS-DVHTEEQKMDDSRDYHMGK 178

Query: 1241 IVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTES---GHKDELFSLRKRGLGNFAGLSGS 1071
            I+V S               +     +L +P+E+   G K       +R L +       
Sbjct: 179  ILVPSKRKGKRKLKTARVSEESIETYLLSLPSEALQEGLKQPTIFSAERALNSRG----- 233

Query: 1070 KKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWAEAAGLNQKTLRSRLQF 891
             +R +IA+NE+EMS GV+ +ANLE++   LE++ GK   L  WA+AAG++++ L+  L F
Sbjct: 234  -RRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAF 292

Query: 890  GWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERYDIEKGYRFSTYV 711
            GWYCR++LI+STR LV+F+A+NYRG+GI F DL+QAG VGVL G ER+D  +GY+FSTYV
Sbjct: 293  GWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYV 352

Query: 710  QYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPNDEEITELTGLSL 531
            QYWIRKSI  M+A H+R +K+P ++   I++IQK ++    S GKYP D EI + TGLSL
Sbjct: 353  QYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIEIAKYTGLSL 412

Query: 530  AYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFIGKEHAREQILNLLQTL 351
            A +R AS+C + VGSI++++ D     ++E   D SVKSP E + ++H ++ +  +L++L
Sbjct: 413  AEIRSASECLRIVGSIDQKIGDCLNAKYLEFAPDRSVKSPKEIVMRQHMKKDVFRILESL 472

Query: 350  HPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEALSKIRSQEMQKRLSHYL 171
              RERQVL LRYGL D R +SLEEIG+L HVS+EWIRK+EK+A++K+R  E  + LSH+L
Sbjct: 473  DSRERQVLVLRYGLNDHRPKSLEEIGKLFHVSKEWIRKLEKKAMTKLRDSETCRDLSHFL 532


>gb|EMJ24122.1| hypothetical protein PRUPE_ppa003696mg [Prunus persica]
          Length = 555

 Score =  373 bits (957), Expect = e-100
 Identities = 200/433 (46%), Positives = 289/433 (66%), Gaps = 2/433 (0%)
 Frame = -1

Query: 1463 MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIRSSNLVNKHL 1287
            ++N++ +E+    +D+++LEK+IL  L RLGA+KLF  C S+ + T + +  S++    +
Sbjct: 127  LQNLNVLEETFATSDVLKLEKEILLQLARLGALKLFDICLSRTLKTSSFLDLSDIPTVPV 186

Query: 1286 DAYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXK-VSRRSVLQIPTESGHKDELFSLR 1110
            +    E + D     I+V S                 VS  S+       G K    S  
Sbjct: 187  EEGKMERKEDNNVGEIIVRSGKKEERRSRKRTSDNAIVSSNSLPPKTIWKGLKKPTLSSG 246

Query: 1109 KRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWAEAA 930
            KR   N+       +R  I+KNE+EMS+GVK +A+LE++ + LE++ GK  +L  WAEAA
Sbjct: 247  KRA-SNYRS-----RRLTISKNEAEMSIGVKVIADLERIKETLEKETGKVATLRCWAEAA 300

Query: 929  GLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTER 750
            G+++K L   L+FGWYC+D+LIRSTRSLV+++A+NYRG+G+A DDL+QAG +G+L G ER
Sbjct: 301  GVHEKVLLQHLRFGWYCQDELIRSTRSLVLYLARNYRGLGVALDDLMQAGNLGLLQGAER 360

Query: 749  YDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYP 570
            +D  +GYRFSTYVQYWIRKS+  ++A H+R V++P  +   INQIQK ++  + S  KYP
Sbjct: 361  FDHSRGYRFSTYVQYWIRKSMSRLVAQHARGVQIPFTLSKAINQIQKARKANYNSHMKYP 420

Query: 569  NDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFIGKE 390
            +DEEI ++TGLSLA +R AS C + VGS++ ++ +    T+ME T DTS+KSP E + ++
Sbjct: 421  DDEEIAKITGLSLARIRSASTCLRVVGSVDHKMWESSDGTYMEFTPDTSLKSPEETVMRQ 480

Query: 389  HAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEALSKI 210
            H ++ I +LL+ L+ RERQVL LRYGL +   +SLEEIGRL HVS+EWIRKIEK+AL K+
Sbjct: 481  HMKKDIHDLLKGLNLRERQVLVLRYGLNNYDPKSLEEIGRLFHVSKEWIRKIEKKALMKL 540

Query: 209  RSQEMQKRLSHYL 171
            R +E  K LSHYL
Sbjct: 541  RVEESHKYLSHYL 553


>gb|EOY29838.1| RNApolymerase sigma-subunit C, putative [Theobroma cacao]
          Length = 848

 Score =  369 bits (947), Expect = 2e-99
 Identities = 195/432 (45%), Positives = 283/432 (65%), Gaps = 1/432 (0%)
 Frame = -1

Query: 1463 MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 1284
            MEN+D +E+    +D++ LE++IL  L R GA+KLF TC S+ +  + I   + V  +  
Sbjct: 419  MENLDVLEETFADSDVLTLEREILLQLGRFGALKLFNTCLSRTLKASNILDLSDVPANSG 478

Query: 1283 AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSLRKR 1104
                 L  D +KDNIVV S                 +  S   +P+ + H       +K 
Sbjct: 479  DCNMNLSVDGQKDNIVVCSRKKKQRKKIRERALENPTIISTQLMPSNTLHG----RFQKP 534

Query: 1103 GLGNFAGLSGSKKREV-IAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWAEAAG 927
             + +   +S S+ R + IA+NE+EMS GVK +ANLE++   LEE+ G+  SL+ WAEAAG
Sbjct: 535  KVSSAKRVSDSRSRRLRIARNEAEMSKGVKVVANLERIRTTLEEETGRAASLSCWAEAAG 594

Query: 926  LNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERY 747
            +++K L+  L+FGWYCRD+L+RSTRSLV++ A+NYRG+GIA +DLIQAG +GVL G ER+
Sbjct: 595  VSEKVLQQHLRFGWYCRDELLRSTRSLVLYFARNYRGLGIAHEDLIQAGSLGVLQGAERF 654

Query: 746  DIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPN 567
            D  +GYRFSTYVQ+WIRKS+  ++A H+R ++VP  +   I QIQK ++    S GKYP+
Sbjct: 655  DHTRGYRFSTYVQFWIRKSVSRIVARHARGIQVPCTLSRAIVQIQKARKALSKSHGKYPD 714

Query: 566  DEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFIGKEH 387
            ++ I + TGLSLA +R A++C + VGSI++++ D     ++E   D SV+SP + + ++H
Sbjct: 715  EDAIAKFTGLSLAKIRSANKCMRVVGSIDQKIGDCMNAKYLEFIPDLSVRSPEKTVMRQH 774

Query: 386  AREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEALSKIR 207
             +E I +LL  L  RERQV+ LRYGL     +SLEEIGRL HVS+EWIR+IE +A+ K+R
Sbjct: 775  MKEDIHDLLNGLDARERQVMVLRYGLKGSPPKSLEEIGRLFHVSKEWIRRIEMKAMKKLR 834

Query: 206  SQEMQKRLSHYL 171
             +E  + LSHYL
Sbjct: 835  DKETCRNLSHYL 846


>ref|XP_004291147.1| PREDICTED: RNA polymerase sigma factor sigC-like [Fragaria vesca
            subsp. vesca]
          Length = 545

 Score =  362 bits (928), Expect = 4e-97
 Identities = 192/432 (44%), Positives = 285/432 (65%)
 Frame = -1

Query: 1463 MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 1284
            ++N++ +E+    + + +LEK+IL  L RLGA+KLF  C S+    T+  SS L    + 
Sbjct: 123  LQNLNVLEETFADSGVSKLEKEILLQLGRLGALKLFEICLSR----TLKTSSFLDLSDIP 178

Query: 1283 AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSLRKR 1104
              P E    E+K+ +                   K S    ++   E   K    S+R+ 
Sbjct: 179  TEPIEKHKTERKNIVRSGKKEEQKSRKRTSYDSKKFSGTLPVKQMREGFKKPNPSSVRRA 238

Query: 1103 GLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWAEAAGL 924
                    +   +R ++AKNE+EMS+GVK +A+LE+L   LE++ GK P+L  WAEAAG+
Sbjct: 239  S-------NSRSRRLMMAKNEAEMSVGVKVIADLERLKVTLEKETGKVPTLRCWAEAAGV 291

Query: 923  NQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERYD 744
            ++K L+ +L FGWYC+D+L+RSTRSLV+++A+NYRG+G+A DDL+QAG +G+L G ER+D
Sbjct: 292  DEKVLQQQLHFGWYCQDELVRSTRSLVLYLARNYRGLGVALDDLLQAGNLGLLQGAERFD 351

Query: 743  IEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPND 564
              +GYRFSTYVQYWIRKS+  ++A H+R +K+P  +   IN+IQK ++  + S  KYP+D
Sbjct: 352  PSRGYRFSTYVQYWIRKSMSRLVAQHARGIKIPNTLSKAINRIQKARKANYNSHMKYPDD 411

Query: 563  EEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFIGKEHA 384
            EEI ++TGLSLA +  AS+C + VGS++ ++ +    T+ME T D +V++P E + ++H 
Sbjct: 412  EEIAKITGLSLAKISSASRCLRVVGSVDHKIWECSAGTYMEFTPDIAVETPEESVMRQHM 471

Query: 383  REQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEALSKIRS 204
            +  I  LL+ L+ RE++VLALRYGL     +SLEEIGRL HVS+EWIRKIEK AL+K+R+
Sbjct: 472  KNDIHVLLEGLNSREKKVLALRYGLNYCNPKSLEEIGRLFHVSKEWIRKIEKNALTKLRN 531

Query: 203  QEMQKRLSHYLQ 168
            +E  K LSHYL+
Sbjct: 532  EESNKNLSHYLK 543


>dbj|BAA22215.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
          Length = 571

 Score =  355 bits (911), Expect = 4e-95
 Identities = 198/438 (45%), Positives = 281/438 (64%), Gaps = 8/438 (1%)
 Frame = -1

Query: 1460 ENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDA 1281
            +N+  +E+  V  D +R+E+DI+  + +LGA +LF TC S+    +I    +   + +D 
Sbjct: 153  KNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITSCLSDTTELVDT 212

Query: 1280 YPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSLRKRG 1101
             P +  F   +  +                   K +RRS   +  E+G +  L  +  R 
Sbjct: 213  TPNQQVFVSSRRKV------------------KKKARRS--SVTAENGDQSSL-PIGLRT 251

Query: 1100 LGNFAGLSG-------SKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRW 942
              N   +          KKRE I++NE+EMS GVK +A++E++   LEE+ GK  SL+ W
Sbjct: 252  TWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCW 311

Query: 941  AEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLN 762
            A AAG+N+K L   L +GWYCRD+L++STRSLV+F+A+NYRGMGIA +DLIQAGYVGVL 
Sbjct: 312  AAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGMGIAHEDLIQAGYVGVLQ 371

Query: 761  GTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSE 582
            G ER+D  +GY+FSTYVQYWIRKS+  M++ H+R V +P  +   IN IQK ++   TS 
Sbjct: 372  GAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSH 431

Query: 581  G-KYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYE 405
            G KY  DEEI +LTG S+  +R A+QC K VGSI+K+V D +TT F+E T DT+++SP E
Sbjct: 432  GIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEE 491

Query: 404  FIGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKE 225
             + ++ AR  I +LL+ L PRE+QV+ LRYGL D R +SLEEIG+L  VS+EWIRKIE+ 
Sbjct: 492  AVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLFKVSKEWIRKIERR 551

Query: 224  ALSKIRSQEMQKRLSHYL 171
            A++K+R Q   + L +YL
Sbjct: 552  AMAKLRDQPNAEDLRYYL 569


>ref|XP_002877947.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
            gi|297323785|gb|EFH54206.1| predicted protein
            [Arabidopsis lyrata subsp. lyrata]
          Length = 568

 Score =  355 bits (910), Expect = 5e-95
 Identities = 196/437 (44%), Positives = 281/437 (64%), Gaps = 7/437 (1%)
 Frame = -1

Query: 1460 ENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDA 1281
            +N+  +E+  V  D  R+E+DI+  + +LGA  LF TC S++   ++    +   + +  
Sbjct: 150  KNLLALEETFVALDSARMERDIMLQMGKLGAADLFKTCLSRSRGSSVASCLSDTTELVGT 209

Query: 1280 YPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSLRKRG 1101
             P +  F   +  +                   K +RRS   +  E+G +  L    +  
Sbjct: 210  TPNQQVFVSSRRKL------------------KKKARRST--VTAENGDQGSLPMGLRTT 249

Query: 1100 LGNF------AGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWA 939
              N             KKRE I+KNE+EMS GVK +A++E++   LEE+ GK  SL+ WA
Sbjct: 250  WNNIDVPRVRRPPKYRKKRERISKNEAEMSTGVKIVADMERIRTQLEEESGKVASLSCWA 309

Query: 938  EAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNG 759
            EAAG+N+K L   L +GWYCRD+L++STRSLV+F+A+NYRG+GIA +DLIQAGYVGVL G
Sbjct: 310  EAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQG 369

Query: 758  TERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEG 579
             ER+D  +GY+FSTYVQYWIRKS+  M++ H+R V +P  +   INQIQK ++   TS G
Sbjct: 370  AERFDHTRGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTLKTSHG 429

Query: 578  -KYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEF 402
             KYP DE+I++LT LS+  +R A+QC K VGSIEK+V D ++T F+E T DT+++SP E 
Sbjct: 430  IKYPADEDISKLTSLSVKKIRAANQCLKVVGSIEKKVGDCFSTKFLEFTPDTTMESPEEA 489

Query: 401  IGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEA 222
            + ++ AR  I +LL+ L PRE+QV+ LRYGL + R +SLEEIG+L  VS+EWIRKIE+ A
Sbjct: 490  VMRQSARRDIHDLLEGLEPREKQVMVLRYGLQNYRPKSLEEIGKLLRVSKEWIRKIERRA 549

Query: 221  LSKIRSQEMQKRLSHYL 171
            ++K+R Q   + L +YL
Sbjct: 550  MAKLRDQPNAEDLRYYL 566


>ref|NP_190960.1| RNA polymerase sigma-subunit C [Arabidopsis thaliana]
            gi|75098239|sp|O24621.1|SIGC_ARATH RecName: Full=RNA
            polymerase sigma factor sigC; Short=Sigma factor C;
            Short=Sigma-C; AltName: Full=RNA polymerase sigma factor
            sig3; Short=Atsig3; Short=Sigma factor 3; Flags:
            Precursor gi|2353175|gb|AAB69386.1| sigma factor 3
            [Arabidopsis thaliana] gi|2463554|dbj|BAA22530.1| SigC
            [Arabidopsis thaliana] gi|5478585|dbj|BAA82450.1| sigma
            factor SigC [Arabidopsis thaliana]
            gi|7630012|emb|CAB88354.1| sigma factor SigC [Arabidopsis
            thaliana] gi|133778870|gb|ABO38775.1| At3g53920
            [Arabidopsis thaliana] gi|332645638|gb|AEE79159.1|
            RNApolymerase sigma-subunit C [Arabidopsis thaliana]
          Length = 571

 Score =  354 bits (909), Expect = 6e-95
 Identities = 197/438 (44%), Positives = 281/438 (64%), Gaps = 8/438 (1%)
 Frame = -1

Query: 1460 ENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDA 1281
            +N+  +E+  V  D +R+E+DI+  + +LGA +LF TC S+    +I    +   + +D 
Sbjct: 153  KNLLALEETFVALDSVRMERDIMLQMGKLGAAELFKTCLSRYRGSSITSCLSDTTELVDT 212

Query: 1280 YPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSLRKRG 1101
             P +  F   +  +                   K +RRS   +  E+G +  L  +  R 
Sbjct: 213  TPNQQVFVSSRRKV------------------KKKARRS--SVTAENGDQSSL-PIGLRT 251

Query: 1100 LGNFAGLSG-------SKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRW 942
              N   +          KKRE I++NE+EMS GVK +A++E++   LEE+ GK  SL+ W
Sbjct: 252  TWNNIDVPRVRRPPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCW 311

Query: 941  AEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLN 762
            A AAG+N+K L   L +GWYCRD+L++STRSLV+F+A+NYRG+GIA +DLIQAGYVGVL 
Sbjct: 312  AAAAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQ 371

Query: 761  GTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSE 582
            G ER+D  +GY+FSTYVQYWIRKS+  M++ H+R V +P  +   IN IQK ++   TS 
Sbjct: 372  GAERFDHTRGYKFSTYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSH 431

Query: 581  G-KYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYE 405
            G KY  DEEI +LTG S+  +R A+QC K VGSI+K+V D +TT F+E T DT+++SP E
Sbjct: 432  GIKYAADEEIAKLTGHSVKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEE 491

Query: 404  FIGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKE 225
             + ++ AR  I +LL+ L PRE+QV+ LRYGL D R +SLEEIG+L  VS+EWIRKIE+ 
Sbjct: 492  AVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSKEWIRKIERR 551

Query: 224  ALSKIRSQEMQKRLSHYL 171
            A++K+R Q   + L +YL
Sbjct: 552  AMAKLRDQPNAEDLRYYL 569


>emb|CAB83107.1| sigma factor 3 [Sinapis alba]
          Length = 567

 Score =  353 bits (906), Expect = 1e-94
 Identities = 213/508 (41%), Positives = 303/508 (59%), Gaps = 2/508 (0%)
 Frame = -1

Query: 1688 LHNTDEGKLSHGTATYKAKACSFGQVQSVERIKVNLDNCTSKICQDVAKQILKGEDSSFI 1509
            L +  EG  SH    +  KAC      + E + V L +    I        L G+  S  
Sbjct: 82   LSSIKEGSRSH-RRDHPLKACGCASA-TAENVYVELKDPKENI-----GMCLVGDQMSSA 134

Query: 1508 HXXXXXXXXXXXXXLMENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVT 1329
                          L +N+  +E   V  D +R+E+DI+  +R+LGA +LF TC S++  
Sbjct: 135  EKAHLSRSMLQYNLLGKNLLALEQTFVALDSLRMERDIMLQMRKLGAAELFNTCLSRS-- 192

Query: 1328 ETIIRSSNLVNKHLDAYPFELRFDEKKDN-IVVHSNXXXXXXXXXXXXXXKVSRRSVLQI 1152
                R S+  +   D    EL  D  ++    VHS                 S  ++   
Sbjct: 193  ----RVSSATSCLPDTGTPELVDDTTQEQKTFVHSTRKLRKKARTGNGDQGSS--TISSR 246

Query: 1151 PTESGHKDELFSLRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEED 972
             T  G   ++  +RK            KKRE I++NE+EMS GVK +A++E++   LEE+
Sbjct: 247  TTWEGI--DVPRVRKPS-------KYRKKRERISRNEAEMSQGVKIVADMERIRTKLEEE 297

Query: 971  MGKPPSLTRWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDL 792
             GK  S++ WAEAAG+NQK L   L FGWYCRD+L++STRSLV+F+A+NYRG+GIA +DL
Sbjct: 298  TGKVASMSCWAEAAGMNQKLLMHNLHFGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDL 357

Query: 791  IQAGYVGVLNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQ 612
            IQAGYVGVL G ER+D  +GY+FSTYV+YWIRKS+  M++ H+R V +P  +   ++QIQ
Sbjct: 358  IQAGYVGVLQGAERFDHTRGYKFSTYVRYWIRKSMSTMVSRHARGVHIPASIIRTMSQIQ 417

Query: 611  KVKRNFHTSEG-KYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEIT 435
            K ++   TS+G KYP DEEI++LTG SL  +R A+QC K VGSI+K+V D +TT F+E T
Sbjct: 418  KARKTLKTSQGIKYPADEEISKLTGYSLKKIRAANQCLKVVGSIDKKVGDCFTTRFLEFT 477

Query: 434  ADTSVKSPYEFIGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVS 255
             D +++SP E + ++ AR ++ NLL+ L PRE+QV+ LRYGL D   +SLEEIG++  VS
Sbjct: 478  PDPTMESPEEAVMRQSARGEVHNLLEGLEPREKQVMVLRYGLQDYSPKSLEEIGKILRVS 537

Query: 254  REWIRKIEKEALSKIRSQEMQKRLSHYL 171
            +E IRKIE+ A++K+R Q     L +YL
Sbjct: 538  KEGIRKIERRAMAKLRDQPKADNLRYYL 565


>ref|XP_006290815.1| hypothetical protein CARUB_v10016920mg [Capsella rubella]
            gi|482559522|gb|EOA23713.1| hypothetical protein
            CARUB_v10016920mg [Capsella rubella]
          Length = 581

 Score =  347 bits (890), Expect = 1e-92
 Identities = 195/443 (44%), Positives = 281/443 (63%), Gaps = 12/443 (2%)
 Frame = -1

Query: 1460 ENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKA----VTETIIRSSNLVNK 1293
            +N+  +E+     D + +E+DI+  + +LGA + F TC S++    +T  +  +++LV  
Sbjct: 163  KNLIALEETFSALDSLGMERDIMFQMGKLGATEFFKTCLSRSRGSSITSCLSETTDLVGT 222

Query: 1292 HLDAYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSL 1113
                          K  + V S                 SR SV     E+G +  L  +
Sbjct: 223  ------------TPKQQVFVSSRRKLKKK---------ASRSSVTG---ENGDQGSL-PI 257

Query: 1112 RKRGLGNFAGLSG-------SKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPS 954
              R   N   +          KKRE I++NE+EMS GVK +A++E++   LEE+ GK  S
Sbjct: 258  ELRTTWNNIDVPRVRRPPKYRKKRERISRNEAEMSTGVKIVADMERIRTQLEEESGKVAS 317

Query: 953  LTRWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYV 774
            L+ WAEAAG+N+K L   L +GWYCRD+L++STRSLV+F+A+NYRG+GIA +DLIQAG+V
Sbjct: 318  LSCWAEAAGMNEKLLMRNLHYGWYCRDELLKSTRSLVLFLARNYRGLGIAHEDLIQAGFV 377

Query: 773  GVLNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNF 594
            GVL G ER+D  +GY+FSTYVQYWIRKS+  M++ H+R V +P  +   INQIQK ++  
Sbjct: 378  GVLQGAERFDHARGYKFSTYVQYWIRKSMSMMVSRHARGVHIPSSIIRTINQIQKARKTL 437

Query: 593  HTSEG-KYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVK 417
             TS G KYP DEEI++LT LS+  +R A+QC K VGSIE +V D ++T F+E T DT ++
Sbjct: 438  KTSHGIKYPADEEISKLTSLSVKKIRAANQCLKVVGSIENKVGDCFSTKFLEFTPDTMME 497

Query: 416  SPYEFIGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRK 237
            SP E + ++ AR  + +LL+ L PRE+QV+ LRYGL D R +SLEEIG+L  VS+EWIR+
Sbjct: 498  SPEEAVMRQSARRDLHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLRVSKEWIRR 557

Query: 236  IEKEALSKIRSQEMQKRLSHYLQ 168
            IE+ A++K+R Q   + L +YL+
Sbjct: 558  IERRAMAKLRDQPNAEDLRYYLK 580


>ref|XP_004148429.1| PREDICTED: RNA polymerase sigma factor sigC-like [Cucumis sativus]
            gi|449507267|ref|XP_004162982.1| PREDICTED: RNA
            polymerase sigma factor sigC-like [Cucumis sativus]
          Length = 559

 Score =  347 bits (890), Expect = 1e-92
 Identities = 185/436 (42%), Positives = 284/436 (65%), Gaps = 5/436 (1%)
 Frame = -1

Query: 1463 MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIRSSNLVNKHL 1287
            MEN+D +E+    + M+ LE+DI+  L +LGA++ F TC S+ + T +   SS L  +  
Sbjct: 131  MENLDVLEETFTESGMLSLERDIVLQLTKLGALEFFNTCLSRTLKTSSFHDSSGLPIEGG 190

Query: 1286 DAYPFELRFDEKKDNIVVHS----NXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELF 1119
            + +    + +++ DN+ V+S                     SR    +   E  H+  +F
Sbjct: 191  EDHNVNQKTNDQNDNVTVYSAKKAGRRSVKKRAMDNADKIASRLLTTRAVKEKIHRSTVF 250

Query: 1118 SLRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWA 939
            S +K         + SK+R ++A NE+EMS GVK +ANLE++ + LE++ G+  S++ WA
Sbjct: 251  SRKKSS-------NSSKRRLIVAINEAEMSTGVKVVANLERIRETLEKESGRIASMSCWA 303

Query: 938  EAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNG 759
            EAA ++ K L+ +LQFG +CRD+L+RST SLV+F+AK YR  G+  +DL+QAG +GVL G
Sbjct: 304  EAASVDIKDLQKQLQFGSFCRDELLRSTNSLVVFLAKKYRCSGLPMEDLVQAGALGVLQG 363

Query: 758  TERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEG 579
             ER+D ++G+R STY+QYWIRKS+  ++A +SR +++P  +   INQIQK ++  + S  
Sbjct: 364  VERFDPKRGFRISTYIQYWIRKSMSRVVARNSRGIQIPRSLTKAINQIQKARKVLNHSGR 423

Query: 578  KYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFI 399
            +Y +D++I   TGL LA VR+AS C K VGS ++++ DG    +ME TAD S++SP E +
Sbjct: 424  RY-SDDDIARATGLPLAKVRVASNCLKVVGSNDQKMGDGVNMKYMEFTADMSIQSPEETV 482

Query: 398  GKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEAL 219
             ++  ++ I N+LQ L  RERQVL LRYGL D   +SLEEIG+L H+S+EW+RKIEK+A+
Sbjct: 483  KRKLMKKDIFNILQRLESRERQVLVLRYGLVDFEPKSLEEIGKLLHISKEWVRKIEKKAM 542

Query: 218  SKIRSQEMQKRLSHYL 171
            +K++++E  K LSHYL
Sbjct: 543  TKLKNEETVKHLSHYL 558


>ref|XP_002516489.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223544309|gb|EEF45830.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 560

 Score =  347 bits (890), Expect = 1e-92
 Identities = 207/552 (37%), Positives = 317/552 (57%), Gaps = 18/552 (3%)
 Frame = -1

Query: 1772 PDLFSSSSSVYLVHTLRDREVCVKFGLLLHNTDEGKLSHGTATYKAKACSFGQVQSVER- 1596
            P   SSS S   V          +   L   ++EG ++H     K  A S+  VQ+VE  
Sbjct: 21   PSRLSSSPSSSFVRGREATSYQSRLSFLSVISEEGDIAHRDPL-KTYAYSYA-VQTVENE 78

Query: 1595 ------IKVNLDNCTSKICQDVAKQILKGEDSSFIHXXXXXXXXXXXXXLMENIDRIEDL 1434
                   KVN    +      +    +  ++  F+              L+EN++ +E  
Sbjct: 79   HSQGEGFKVNFGKRSHFGLNIIGDAEVSLKEDIFVSPSSTKERTSRFSLLLENLNILEQS 138

Query: 1433 IVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAV-TETIIRSSNLVNKHLDAYPFELRFD 1257
               +D  +LE+DIL  L +LGA+KLF TC ++ + T  ++  S++  + +          
Sbjct: 139  FADSDASKLEEDILLQLGKLGALKLFNTCLTRTLETTNVLEVSDVHTEIIGECNINGTSI 198

Query: 1256 EKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSLRKRGLGN----- 1092
              +  +VVH+                 SRR   +     GHK     L  R + +     
Sbjct: 199  NNQIKVVVHTAKKEERK----------SRRE--RASARKGHKSPSLPLPSRPIQSGSEKP 246

Query: 1091 --FAGLSGSK---KREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWAEAAG 927
               +G   SK   +R +IA+NE+EM+ G+K +A+LEK+   LEE+  +  SL+ WAEAAG
Sbjct: 247  TVSSGKKASKSKSRRLIIARNEAEMARGIKVLADLEKIRTTLEEETERVVSLSCWAEAAG 306

Query: 926  LNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERY 747
            L+ K L+ +L FGWYCRD+LI+STRSLV++ A+NYRG GIA +DL+QAG +GVL G ER+
Sbjct: 307  LDVKVLQQQLSFGWYCRDELIKSTRSLVLYFARNYRGTGIALEDLLQAGNLGVLEGAERF 366

Query: 746  DIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPN 567
            D  +GYRFSTYVQYWIRKS+  +++  +R +++P  +   I QIQK ++   TS GKYP+
Sbjct: 367  DHTRGYRFSTYVQYWIRKSMSKIVSRLARGIQIPCTLSRAIYQIQKARKALTTSNGKYPD 426

Query: 566  DEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFIGKEH 387
            D+EI + TGLSLA +  AS+C + VGSI++++ +     ++E   DTSV+SP E + ++H
Sbjct: 427  DDEIAKYTGLSLAKIESASRCLRVVGSIDQKIGESLNAKYLEFLPDTSVQSPEEVVMRQH 486

Query: 386  AREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEALSKIR 207
              + + NLL++L  RERQVL LR+GL D + +SLEEIGR  HVS+EW+R++EK  ++++R
Sbjct: 487  MIQDMHNLLRSLDSRERQVLILRFGLNDYQPKSLEEIGRHFHVSKEWVRRLEKRVMTRLR 546

Query: 206  SQEMQKRLSHYL 171
            ++E  + L HY+
Sbjct: 547  NEETCRNLRHYI 558


>ref|XP_002308586.1| hypothetical protein POPTR_0006s25090g [Populus trichocarpa]
            gi|222854562|gb|EEE92109.1| hypothetical protein
            POPTR_0006s25090g [Populus trichocarpa]
          Length = 559

 Score =  347 bits (890), Expect = 1e-92
 Identities = 198/549 (36%), Positives = 325/549 (59%), Gaps = 19/549 (3%)
 Frame = -1

Query: 1760 SSSSSVYLVHTLRDREVCV---KFGLLLHNTDEGKLSHGTATYKAKACSFGQVQ------ 1608
            ++S+S++   + R  E  V   +   L   ++EG + +   ++K+ ACS           
Sbjct: 21   TNSTSMFSSFSARGMEASVNQARLSFLSVVSEEGDILN-KHSFKSFACSSAAQNVENDCL 79

Query: 1607 SVERIKVNLDNCTSKICQDVA--KQILKGEDSSFIHXXXXXXXXXXXXXLMENIDRIEDL 1434
             +ER+K+N+D  +     ++    ++   E+ S  H             L++N+D +E L
Sbjct: 80   QMERLKMNVDKTSHVSINNMMGNDKVSVEEEISTSHTRLRERMTSRISFLLDNLDTLEKL 139

Query: 1433 IVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDAYPFELRFDE 1254
            +   D ++LE+DIL  L RLGA++ F  C S+      +++SN+++  L A P E   + 
Sbjct: 140  VADLDALKLERDILLQLGRLGALEFFNACLSRT-----LQTSNVLD--LSAVPTENTGES 192

Query: 1253 KKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSLRKRGLGN------ 1092
            K D ++                      R+     +++G K    SL  + + N      
Sbjct: 193  KTDGMLGDLTGKTVVRTGKKEERKFRRERAA----SDNGKKTTSLSLPSKTVQNNLPKPT 248

Query: 1091 --FAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWAEAAGLNQ 918
                  S S +R +IA+NE++M+ GVK  ++LE++   LEE+ G+  SL+ WAEA GL++
Sbjct: 249  FVKRTSSSSSRRSLIARNEAKMTRGVKVASDLERIRTTLEEETGQVVSLSCWAEATGLDK 308

Query: 917  KTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERYDIE 738
            K L+ +LQFGWYCRD+LI++T SLV+++A+NYRGMGIA +DLIQAG +G+L G ER+D  
Sbjct: 309  KVLQQQLQFGWYCRDELIKNTHSLVLYIARNYRGMGIAMEDLIQAGNLGLLQGAERFDPT 368

Query: 737  KGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPNDEE 558
            +GYRFSTYVQYWIRKS+L ++  H+R +++P  +   IN+IQK ++    S G+YP+D E
Sbjct: 369  RGYRFSTYVQYWIRKSMLKIVERHARGIQIPYALSRSINKIQKARKALSNSHGRYPDDWE 428

Query: 557  ITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFIGKEHARE 378
            + + TGLSLA +  A +C + V S+++++ +G    + E   D S+++P E + ++H RE
Sbjct: 429  VAKFTGLSLAKIESAQKCLRVVASLDQKIGEGHYAKYSEFIPDMSIQNPEEAVMRQHMRE 488

Query: 377  QILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEALSKIRSQE 198
            +I +LL+ L  RE+QV+ LRYG  D + +SL EIGRL  VS+E +RKIEK+ + K+R + 
Sbjct: 489  EIYDLLRGLDSREKQVMVLRYGFKDNQPKSLAEIGRLFRVSKERVRKIEKKIMIKLRDEG 548

Query: 197  MQKRLSHYL 171
            +++ LS Y+
Sbjct: 549  IRRNLSRYM 557


>ref|XP_006355305.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum tuberosum]
          Length = 555

 Score =  345 bits (884), Expect = 5e-92
 Identities = 186/438 (42%), Positives = 283/438 (64%), Gaps = 8/438 (1%)
 Frame = -1

Query: 1463 MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 1284
            M+N+D +E++   ++M RLE+DIL  L +LGA++ F TC S+         S+   K LD
Sbjct: 126  MKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRT------HHSSTFPKVLD 179

Query: 1283 AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRS--------VLQIPTESGHKD 1128
              P EL  + +KD++V   N              + SRR+        ++ +   + +  
Sbjct: 180  V-PRELIKEVEKDDLV--GNAIDKVVVRSRKKQERKSRRNRASRNANDIITVQPHTKNIQ 236

Query: 1127 ELFSLRKRGLGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLT 948
            E     K   G     S   KR+ IAKNE+EMS GVK +A LE++   LEE+ G+  + +
Sbjct: 237  EDLQQPKFYSGKRTQAS-RNKRQKIAKNEAEMSRGVKLVAQLERIRSILEEETGRVATFS 295

Query: 947  RWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGV 768
             WAEAAG+ QK L+ RL FGWYCRD+L++STRSLV+++A+NYRG+G+AF+DLIQAG +GV
Sbjct: 296  SWAEAAGIEQKELQQRLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGNMGV 355

Query: 767  LNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHT 588
            L G  R+D  +GY+FSTYVQYWIRKS+  ++A H+R V++P  +  +INQI K ++    
Sbjct: 356  LQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKTLSR 415

Query: 587  SEGKYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPY 408
            S GK+P D+EI + TGLS A + +AS+C + VGSI+++V D  +   +E+T D S+ SP 
Sbjct: 416  SHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCISAKVLELTPDKSITSPE 475

Query: 407  EFIGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEK 228
            E + ++   + + +LL++L P+E+QV+  R+GL   + +SLEEIGRL  VS+EWIR+IE+
Sbjct: 476  ETVMRQDIVDNMYSLLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRRIER 535

Query: 227  EALSKIRSQEMQKRLSHY 174
             AL+K+R+ +  + ++HY
Sbjct: 536  RALTKLRNADYFQHITHY 553


>ref|XP_004245130.1| PREDICTED: RNA polymerase sigma factor sigC-like [Solanum
            lycopersicum]
          Length = 551

 Score =  345 bits (884), Expect = 5e-92
 Identities = 189/441 (42%), Positives = 282/441 (63%), Gaps = 11/441 (2%)
 Frame = -1

Query: 1463 MENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLD 1284
            M+N+D +E++   ++M RLE+DIL  L +LGA++ F TC S+         S+   K LD
Sbjct: 122  MKNLDLLENMFADSEMSRLERDILVQLEKLGALEFFHTCLSRT------HHSSSFPKVLD 175

Query: 1283 AYPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRR-----SVLQIPTESGHKDELF 1119
              P EL  + +KD++V   N              ++SRR     +   I T   H   + 
Sbjct: 176  V-PRELIKEVEKDDLV--GNAMDKVVVRSRKKQERMSRRKRASRNANDIITVQPHTKNI- 231

Query: 1118 SLRKRGLGNFAGLSGSK------KREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPP 957
               +  L      SG +      KR+ IAKNE+EMS GVK +A LE++   LEE+ G+  
Sbjct: 232  ---QEDLQQLKFYSGKRTHASRTKRQKIAKNEAEMSKGVKLVAQLERIRSILEEETGQVA 288

Query: 956  SLTRWAEAAGLNQKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGY 777
            + + WA+AAG+ QK L+  L FGWYCRD+L++STRSLV+++A+NYRG+G+AF+DLIQAG 
Sbjct: 289  TFSSWAKAAGIEQKELQQHLHFGWYCRDELLKSTRSLVLYLARNYRGLGVAFEDLIQAGN 348

Query: 776  VGVLNGTERYDIEKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRN 597
            +GVL G  R+D  +GY+FSTYVQYWIRKS+  ++A H+R V++P  +  +INQI K ++ 
Sbjct: 349  MGVLQGAVRFDHTRGYKFSTYVQYWIRKSLSKLVAQHARGVRIPFTICKVINQIHKARKT 408

Query: 596  FHTSEGKYPNDEEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVK 417
               S GK+P D+EI + TGLS A + +AS+C + VGSI+++V D      +E+T D SV 
Sbjct: 409  LSRSHGKFPADDEIAKFTGLSTARIAMASKCLRVVGSIDQKVGDCINAKVLELTPDKSVT 468

Query: 416  SPYEFIGKEHAREQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRK 237
            SP EF+ ++   + +  LL++L P+E+QV+  R+GL   + +SLEEIGRL  VS+EWIR+
Sbjct: 469  SPEEFVMRQDIVDNMYALLESLDPKEQQVIYFRFGLETHQRKSLEEIGRLYGVSKEWIRR 528

Query: 236  IEKEALSKIRSQEMQKRLSHY 174
            IE+ AL+K+RS +  + ++HY
Sbjct: 529  IERRALTKLRSADYFQHITHY 549


>ref|XP_006403640.1| hypothetical protein EUTSA_v10010251mg [Eutrema salsugineum]
            gi|312281919|dbj|BAJ33825.1| unnamed protein product
            [Thellungiella halophila] gi|557104759|gb|ESQ45093.1|
            hypothetical protein EUTSA_v10010251mg [Eutrema
            salsugineum]
          Length = 562

 Score =  340 bits (873), Expect = 9e-91
 Identities = 191/431 (44%), Positives = 275/431 (63%), Gaps = 1/431 (0%)
 Frame = -1

Query: 1460 ENIDRIEDLIVGADMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDA 1281
            +N+  +E+  V  D +R+E+DI+  + +LGA +LF TC S++      R S+ V   L  
Sbjct: 143  KNLLALEETFVSLDSLRMERDIMLQMGKLGATELFKTCLSRS------RGSS-VTSCLSD 195

Query: 1280 YPFELRFDEKKDNIVVHSNXXXXXXXXXXXXXXKVSRRSVLQIPTESGHKDELFSLRKRG 1101
               EL    ++    V S                   +  L I + +   D + + R R 
Sbjct: 196  TGTELVVATEEQQTFVPSRRKLKKKARRSSLSTGKGDQGSLLIGSRTTWND-IDAPRLRK 254

Query: 1100 LGNFAGLSGSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWAEAAGLN 921
               +      KKRE I++NE+EMS G K +A++E++   LEE+ GK  S++ WAEAAG+N
Sbjct: 255  SSKYR-----KKRERISRNEAEMSAGAKIVADMERIRTKLEEESGKVASMSCWAEAAGMN 309

Query: 920  QKTLRSRLQFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERYDI 741
            +  L   L +GWYCRD+L++STRSLV+F+++NYRG+GIA +DLIQAG VGVL G ER+D 
Sbjct: 310  EILLMRNLHYGWYCRDELLKSTRSLVLFLSRNYRGLGIAHEDLIQAGNVGVLQGAERFDH 369

Query: 740  EKGYRFSTYVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEG-KYPND 564
             +GY+FSTYVQYWIRKS+  M++ H+R V +P  +   ++QIQK ++   TS G KYP D
Sbjct: 370  TRGYKFSTYVQYWIRKSMSMMVSRHARGVYIPSSVIRTMSQIQKARKTLKTSHGIKYPAD 429

Query: 563  EEITELTGLSLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFIGKEHA 384
            EEI++ TG SL  +R A+QC K VGSI+K+V D +TT F+E T DT+++SP E + ++ A
Sbjct: 430  EEISKETGYSLKKIRAANQCLKVVGSIDKKVGDCFTTKFLEFTPDTTMESPEEAVMRQSA 489

Query: 383  REQILNLLQTLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEALSKIRS 204
               + +LLQ L PRE+QV+ LRYGL   R +SLEEIG+L  VS+EWIRKIE+ A++K+R 
Sbjct: 490  WRDVHDLLQGLEPREKQVMVLRYGLQGFRPKSLEEIGKLLKVSKEWIRKIERRAMAKLRD 549

Query: 203  QEMQKRLSHYL 171
            Q   + L  YL
Sbjct: 550  QANAENLRFYL 560


>emb|CAD20832.1| sigma factor [Spinacia oleracea]
          Length = 548

 Score =  336 bits (862), Expect = 2e-89
 Identities = 201/542 (37%), Positives = 313/542 (57%), Gaps = 11/542 (2%)
 Frame = -1

Query: 1763 FSSSSSVYLVHTLRDREV---CVKFGLLLHNTDEGKLSHGTATYKAKACSFGQVQSVERI 1593
            F+++SS     + R +E+     +  LL    DE +      T +  A S     +VE  
Sbjct: 21   FTTNSSPPCSTSFRGKELDFGSARLSLLTIGFDESETLRKD-TLRPHAGSSSVPLTVEND 79

Query: 1592 KVNLDNCTSK-ICQDVAK--QILKGEDSSFIHXXXXXXXXXXXXXLMENIDRIEDLIVGA 1422
              NL+   SK  C+D+    ++L   D S                LM NI+ +E+ +  +
Sbjct: 80   YSNLETTISKRSCKDLISDTEVLSDRDVSVYVRSVQSCSASHFHTLMANINLLENKVSDS 139

Query: 1421 DMIRLEKDILTHLRRLGAMKLFTTCFSKAVTETIIRSSNLVNKHLDAYPFELRFD-EKKD 1245
            ++++LEKDIL  L RLGA++LF  C S+     II  S+L     +     +R D E K 
Sbjct: 140  ELLKLEKDILVQLGRLGALQLFHACLSR-----IIDMSDLPGLITEDGKANVRKDNELKK 194

Query: 1244 NIVVHSNXXXXXXXXXXXXXXKVSRR----SVLQIPTESGHKDELFSLRKRGLGNFAGLS 1077
             +V                    S+R    S   I +   H     + + +  G      
Sbjct: 195  KLVFSKRKEERKLRQERRLQASTSKRCACKSESSIESSIHHVVSTAAKKTKARG------ 248

Query: 1076 GSKKREVIAKNESEMSMGVKEMANLEKLCKNLEEDMGKPPSLTRWAEAAGLNQKTLRSRL 897
               +R +IAKNE+EMS G+K +A LEK+   LE++ GK  SL  WAEAAG+++K L+  L
Sbjct: 249  ---RRAIIAKNEAEMSRGIKVVAQLEKVKLTLEKETGKAVSLNCWAEAAGIDEKVLQHDL 305

Query: 896  QFGWYCRDKLIRSTRSLVIFVAKNYRGMGIAFDDLIQAGYVGVLNGTERYDIEKGYRFST 717
             FGWYCRD+L++S RSLV+++++ YRG+G+A +DL+QAG +G+L G ER+D  +GY+FST
Sbjct: 306  HFGWYCRDELLKSGRSLVLYLSRYYRGLGVAHEDLMQAGNIGILQGAERFDHTRGYQFST 365

Query: 716  YVQYWIRKSILAMIASHSRTVKVPVRMESMINQIQKVKRNFHTSEGKYPNDEEITELTGL 537
            YVQYWIRK++  +++ H R +KVP  + + IN++QK ++    S+GK+P+D E+++ TGL
Sbjct: 366  YVQYWIRKAMSQLVSRHGRGIKVPTTLSTTINRVQKARKILKRSQGKHPDDVEVSKSTGL 425

Query: 536  SLAYVRLASQCSKSVGSIEKEVRDGWTTTFMEITADTSVKSPYEFIGKEHAREQILNLLQ 357
            SL  ++ A  C + VGS++++V       ++E T DT+++ P + + K+H R  +  LLQ
Sbjct: 426  SLDKIKSADNCLRIVGSLDQKVGHFINMKYLECTPDTALEMPEKTVMKQHMRNDVHKLLQ 485

Query: 356  TLHPRERQVLALRYGLGDGRCRSLEEIGRLCHVSREWIRKIEKEALSKIRSQEMQKRLSH 177
             L P+ER+VL  RYGL +G C SL E+G++  VS+EWIRK+EK AL+K+R+++ Q  L H
Sbjct: 486  ELDPKERRVLIHRYGL-EGHCMSLHEVGKVFDVSKEWIRKMEKRALTKLRTEQNQTNLKH 544

Query: 176  YL 171
            YL
Sbjct: 545  YL 546