BLASTX nr result
ID: Zingiber25_contig00024093
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00024093
(256 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA88922.1| sigma factor [Nicotiana tabacum] 57 2e-06
ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-... 57 2e-06
gb|EXB29118.1| RNA polymerase sigma factor rpoD [Morus notabilis] 56 4e-06
ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-... 56 4e-06
ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-... 56 4e-06
ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [... 56 4e-06
gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus pe... 56 6e-06
dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativ... 55 7e-06
dbj|BAA88921.1| sigma factor [Nicotiana tabacum] 55 7e-06
ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis tha... 55 7e-06
ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-... 55 7e-06
ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citr... 55 7e-06
ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutr... 55 7e-06
gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao] 55 7e-06
ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Caps... 55 7e-06
gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thali... 55 7e-06
dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Or... 55 7e-06
dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Or... 55 7e-06
dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsi... 55 7e-06
ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis ... 55 7e-06
>dbj|BAA88922.1| sigma factor [Nicotiana tabacum]
Length = 502
Score = 57.4 bits (137), Expect = 2e-06
Identities = 29/35 (82%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML-KH 103
+GLSRERVRQVGLVA+EKLKH AR+RRL+AML KH
Sbjct: 468 IGLSRERVRQVGLVALEKLKHAARKRRLDAMLVKH 502
>ref|XP_004235299.1| PREDICTED: RNA polymerase sigma factor sigA-like [Solanum
lycopersicum]
Length = 509
Score = 57.0 bits (136), Expect = 2e-06
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML 97
+GLSRERVRQVGLVA+EKLKH AR+RRL+AML
Sbjct: 475 IGLSRERVRQVGLVALEKLKHAARKRRLDAML 506
>gb|EXB29118.1| RNA polymerase sigma factor rpoD [Morus notabilis]
Length = 508
Score = 56.2 bits (134), Expect = 4e-06
Identities = 28/35 (80%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML-KH 103
+GLSRERVRQVGLVA+EKLKH ARR+++EAML KH
Sbjct: 474 IGLSRERVRQVGLVALEKLKHAARRKQMEAMLVKH 508
>ref|XP_003539986.1| PREDICTED: RNA polymerase sigma factor sigA-like [Glycine max]
Length = 503
Score = 56.2 bits (134), Expect = 4e-06
Identities = 28/35 (80%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAM-LKH 103
+GLSRERVRQVGLVA+EKLKH AR+R++EAM LKH
Sbjct: 469 IGLSRERVRQVGLVALEKLKHAARKRQMEAMLLKH 503
>ref|XP_003534364.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1
[Glycine max] gi|571478813|ref|XP_006587676.1|
PREDICTED: RNA polymerase sigma factor sigA-like isoform
X2 [Glycine max]
Length = 503
Score = 56.2 bits (134), Expect = 4e-06
Identities = 28/35 (80%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAM-LKH 103
+GLSRERVRQVGLVA+EKLKH AR+R++EAM LKH
Sbjct: 469 IGLSRERVRQVGLVALEKLKHAARKRQMEAMLLKH 503
>ref|XP_002524027.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
gi|223536754|gb|EEF38395.1| RNA polymerase sigma factor
rpoD, putative [Ricinus communis]
Length = 508
Score = 56.2 bits (134), Expect = 4e-06
Identities = 28/35 (80%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML-KH 103
+GLSRERVRQVGLVA+EKLKH AR+++LEAML KH
Sbjct: 474 IGLSRERVRQVGLVALEKLKHAARKKKLEAMLVKH 508
>gb|EMJ20222.1| hypothetical protein PRUPE_ppa004393mg [Prunus persica]
Length = 512
Score = 55.8 bits (133), Expect = 6e-06
Identities = 28/35 (80%), Positives = 32/35 (91%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAM-LKH 103
+GLSRERVRQVGLVA+EKLKH AR+R +EAM LKH
Sbjct: 478 IGLSRERVRQVGLVALEKLKHAARKREMEAMLLKH 512
>dbj|BAA24364.1| plastid RNA polymerase sigma factor [Oryza sativa Japonica Group]
Length = 519
Score = 55.5 bits (132), Expect = 7e-06
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +2
Query: 5 GLSRERVRQVGLVAMEKLKHVARRRRLEAMLK 100
GLSRERVRQVGL+AMEKLKH ARR+ LEA+L+
Sbjct: 486 GLSRERVRQVGLIAMEKLKHAARRKNLEALLE 517
>dbj|BAA88921.1| sigma factor [Nicotiana tabacum]
Length = 508
Score = 55.5 bits (132), Expect = 7e-06
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML 97
+GLSRERVRQVGLVA+EKLKH AR+R+L+AML
Sbjct: 474 IGLSRERVRQVGLVALEKLKHAARKRQLDAML 505
>ref|NP_176666.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|75098242|sp|O24629.1|SIGA_ARATH RecName: Full=RNA
polymerase sigma factor sigA; Short=Sigma factor A;
Short=Sigma-A; AltName: Full=RNA polymerase sigma factor
sig1; Short=Atsig1; Short=Sigma factor 1; AltName:
Full=RNA polymerase sigma factor sig2; Short=Atsig2;
Short=Sigma factor 2; AltName: Full=RNA polymerase sigma
factor sigB; Short=Sigma factor B; Short=Sigma-B; Flags:
Precursor gi|5042421|gb|AAD38260.1|AC006193_16 RNA
polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|2353171|gb|AAB69384.1| sigma factor 1 [Arabidopsis
thaliana] gi|2443408|dbj|BAA22421.1| SigA [Arabidopsis
thaliana] gi|2558514|emb|CAA74640.1| plastid RNA
polymerase sigma factor [Arabidopsis thaliana]
gi|5478439|dbj|BAA82448.1| sigma factor SigA
[Arabidopsis thaliana] gi|17064900|gb|AAL32604.1| RNA
polymerase sigma subunit 1 [Arabidopsis thaliana]
gi|20259916|gb|AAM13305.1| RNA polymerase sigma subunit
1 [Arabidopsis thaliana] gi|222423019|dbj|BAH19492.1|
AT1G64860 [Arabidopsis thaliana]
gi|332196177|gb|AEE34298.1| RNA polymerase sigma subunit
1 [Arabidopsis thaliana]
Length = 502
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML 97
+GLSRERVRQVGLVA+EKLKH AR+R++EAM+
Sbjct: 468 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 499
>ref|XP_006484698.1| PREDICTED: RNA polymerase sigma factor sigA-like isoform X1 [Citrus
sinensis] gi|568862456|ref|XP_006484699.1| PREDICTED:
RNA polymerase sigma factor sigA-like isoform X2 [Citrus
sinensis] gi|568862458|ref|XP_006484700.1| PREDICTED:
RNA polymerase sigma factor sigA-like isoform X3 [Citrus
sinensis]
Length = 508
Score = 55.5 bits (132), Expect = 7e-06
Identities = 27/35 (77%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML-KH 103
+GLSRERVRQVGLVA+EKLKH AR++++EAML KH
Sbjct: 474 IGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508
>ref|XP_006437403.1| hypothetical protein CICLE_v10031289mg [Citrus clementina]
gi|557539599|gb|ESR50643.1| hypothetical protein
CICLE_v10031289mg [Citrus clementina]
Length = 508
Score = 55.5 bits (132), Expect = 7e-06
Identities = 27/35 (77%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML-KH 103
+GLSRERVRQVGLVA+EKLKH AR++++EAML KH
Sbjct: 474 IGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508
>ref|XP_006419162.1| hypothetical protein EUTSA_v10002486mg [Eutrema salsugineum]
gi|557097090|gb|ESQ37598.1| hypothetical protein
EUTSA_v10002486mg [Eutrema salsugineum]
Length = 519
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML 97
+GLSRERVRQVGLVA+EKLKH AR+R++EAM+
Sbjct: 485 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 516
>gb|EOY10268.1| Sigma factor A isoform 1 [Theobroma cacao]
Length = 508
Score = 55.5 bits (132), Expect = 7e-06
Identities = 27/35 (77%), Positives = 33/35 (94%), Gaps = 1/35 (2%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML-KH 103
+GLSRERVRQVGLVA+EKLKH AR++++EAML KH
Sbjct: 474 IGLSRERVRQVGLVALEKLKHAARKKKMEAMLVKH 508
>ref|XP_006302143.1| hypothetical protein CARUB_v10020145mg [Capsella rubella]
gi|482570853|gb|EOA35041.1| hypothetical protein
CARUB_v10020145mg [Capsella rubella]
Length = 521
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML 97
+GLSRERVRQVGLVA+EKLKH AR+R++EAM+
Sbjct: 487 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 518
>gb|AAB81958.1| RNA polymerase sigma subunit 1 [Arabidopsis thaliana]
Length = 502
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML 97
+GLSRERVRQVGLVA+EKLKH AR+R++EAM+
Sbjct: 468 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 499
>dbj|BAC99906.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 342
Score = 55.5 bits (132), Expect = 7e-06
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +2
Query: 5 GLSRERVRQVGLVAMEKLKHVARRRRLEAMLK 100
GLSRERVRQVGL+AMEKLKH ARR+ LEA+L+
Sbjct: 309 GLSRERVRQVGLIAMEKLKHAARRKNLEALLE 340
>dbj|BAC99905.1| putative plastid RNA polymerase sigma factor [Oryza sativa Japonica
Group]
Length = 388
Score = 55.5 bits (132), Expect = 7e-06
Identities = 26/32 (81%), Positives = 30/32 (93%)
Frame = +2
Query: 5 GLSRERVRQVGLVAMEKLKHVARRRRLEAMLK 100
GLSRERVRQVGL+AMEKLKH ARR+ LEA+L+
Sbjct: 355 GLSRERVRQVGLIAMEKLKHAARRKNLEALLE 386
>dbj|BAA22214.1| plastid RNA polymerase sigma-subunit [Arabidopsis thaliana]
Length = 502
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML 97
+GLSRERVRQVGLVA+EKLKH AR+R++EAM+
Sbjct: 468 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 499
>ref|XP_002886771.1| RNA polymerase sigma subunit 1 [Arabidopsis lyrata subsp. lyrata]
gi|297332612|gb|EFH63030.1| RNA polymerase sigma subunit
1 [Arabidopsis lyrata subsp. lyrata]
Length = 503
Score = 55.5 bits (132), Expect = 7e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = +2
Query: 2 LGLSRERVRQVGLVAMEKLKHVARRRRLEAML 97
+GLSRERVRQVGLVA+EKLKH AR+R++EAM+
Sbjct: 469 IGLSRERVRQVGLVALEKLKHAARKRKMEAMI 500