BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00022422
         (1513 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   452   e-124
gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]           445   e-122
gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japo...   445   e-122
gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indi...   444   e-122
ref|XP_003576723.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   441   e-121
dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]    439   e-120
ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [...   436   e-119
ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mit...   434   e-119
gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilo...   434   e-119
gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Tritic...   432   e-118
ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   432   e-118
ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Popu...   431   e-118
gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theob...   431   e-118
gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   429   e-117
ref|XP_006651552.1| PREDICTED: RNA pseudouridine synthase 4, mit...   426   e-116
ref|XP_004956276.1| PREDICTED: RNA pseudouridine synthase 4, mit...   423   e-115
gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus pe...   422   e-115
ref|XP_004954753.1| PREDICTED: RNA pseudouridine synthase 4, mit...   419   e-114
ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitoc...   417   e-114
ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citr...   416   e-113

>ref|XP_002282614.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial [Vitis vinifera]
            gi|296090438|emb|CBI40257.3| unnamed protein product
            [Vitis vinifera]
          Length = 476

 Score =  452 bits (1162), Expect = e-124
 Identities = 244/412 (59%), Positives = 305/412 (74%), Gaps = 14/412 (3%)
 Frame = +2

Query: 38   GKELSGLRPPAAT------ESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKR----VSSE 187
            GK LSG R    T       S TALKWV RCCP LP SLVQKLFRLRQVR+     ++S+
Sbjct: 72   GKVLSGHRTDLNTGNTTAGASTTALKWVVRCCPQLPRSLVQKLFRLRQVRRESYNMITSD 131

Query: 188  IEPLSNADHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSL 367
            I  + N +H    R KRV+AK+ M LG+ I + +T+++  +E+      ND E +FV +L
Sbjct: 132  IG-VQNQEH----RLKRVAAKDLMNLGDQILLPITVEEFPSEKH-EYHCNDEEINFVHNL 185

Query: 368  ELYKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLV 547
            ELYKD AIIV+NKPPGLP QGG+GIK S+DELAA  L Y+ SEPPRLVHRLDRDSSG+L+
Sbjct: 186  ELYKDPAIIVVNKPPGLPVQGGIGIKRSLDELAATYLRYDCSEPPRLVHRLDRDSSGILI 245

Query: 548  LGRTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKI 727
            +GRTQ+S  +LHS+FREKT GA +NDI   +R +QR+Y ALVIG+PR PRGLISA L K+
Sbjct: 246  MGRTQTSATILHSIFREKTFGASNNDIDTKKRILQRRYWALVIGSPRRPRGLISAPLGKV 305

Query: 728  VLEDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADI 907
            V++DGKSERI I DN ++ SS HA+TEY++I SS  G+TWLEL PLTGRKHQLRVHCA++
Sbjct: 306  VVDDGKSERITIVDNVQTMSSQHAITEYRVIKSSCHGYTWLELSPLTGRKHQLRVHCAEV 365

Query: 908  LGTPIVGDDKYGRRENMKLEPIHLPQSVTKS--EDIPKEKL-PFGLNLNGGSISDKWPRM 1078
            LGTPIVGD KYG + + K + +    ++ K+  E++   K  PFGL+L  GSI DK P +
Sbjct: 366  LGTPIVGDYKYGWQAHRKWKQL-FQSNIEKNLDENLSNRKTHPFGLDLESGSILDKQPHL 424

Query: 1079 HLHCKQMVLPNVSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHMQKSWEILNS 1231
            HLHCKQMVLPNVS+ALQ LQ S + D S++E L  VAPLP HMQ+SW+ILNS
Sbjct: 425  HLHCKQMVLPNVSLALQNLQLSAECDLSELESLEFVAPLPSHMQRSWDILNS 476


>gb|EXB63685.1| RNA pseudourine synthase 4 [Morus notabilis]
          Length = 470

 Score =  445 bits (1145), Expect = e-122
 Identities = 225/385 (58%), Positives = 293/385 (76%), Gaps = 3/385 (0%)
 Frame = +2

Query: 86   TALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMIL 265
            TALKWV RCCP+LP SLVQKLFRLRQVR R S  +E  +  D   + R +RVSAK+S+ L
Sbjct: 88   TALKWVVRCCPELPRSLVQKLFRLRQVR-RESFNVEDCNAGDQLGKPRLRRVSAKDSLNL 146

Query: 266  GEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIK 445
            G+ I + +++++L  E+      N+ E  F+RSLELYKD AI+V+NKPPGLP QGG+GIK
Sbjct: 147  GDKIFLPISVKELPVEKK-ECFCNEEEVKFIRSLELYKDPAIVVVNKPPGLPVQGGIGIK 205

Query: 446  YSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSND 625
             S+D+LA  CL Y+ +EPPRLVHRLDRD SG+LV+GRTQ+S  VLHS+FREKT GA +++
Sbjct: 206  TSLDQLAVTCLSYDYTEPPRLVHRLDRDCSGILVMGRTQTSATVLHSIFREKTFGASNDE 265

Query: 626  ITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALT 805
                +  +QR+Y A VIG+PRHP GLISA L K+VL++GKS+RI + +   + SS HA+T
Sbjct: 266  TVKGKIVLQRRYWAFVIGSPRHPNGLISAPLRKVVLDNGKSDRITVVNGSHTLSSQHAIT 325

Query: 806  EYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQ 985
            +YK+IGSSS G+TWLEL PLTGRKHQLRVHCA++LGTP+VGD KYG + +   +P+H P 
Sbjct: 326  KYKVIGSSSHGYTWLELSPLTGRKHQLRVHCAEVLGTPMVGDYKYGWQAHRDWKPLHWPD 385

Query: 986  SVTKS-EDIPKEK-LPFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQS-KDHDF 1156
               K  E +PK K LPFGLN++ GSIS+K PR+HLHCKQMVLPN+S  LQ +Q   D++ 
Sbjct: 386  PDNKCIEVLPKRKNLPFGLNMDNGSISEKHPRLHLHCKQMVLPNISHVLQNVQRYSDYEL 445

Query: 1157 SQVEKLNLVAPLPPHMQKSWEILNS 1231
            S++E+L L APLP +MQ+SW + NS
Sbjct: 446  SRLERLKLDAPLPSYMQRSWHLTNS 470


>gb|EEE69173.1| hypothetical protein OsJ_28343 [Oryza sativa Japonica Group]
          Length = 465

 Score =  445 bits (1144), Expect = e-122
 Identities = 232/389 (59%), Positives = 300/389 (77%), Gaps = 3/389 (0%)
 Frame = +2

Query: 77   ESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNAD-HPEQGRFKRVSAKE 253
            +  TA+KWVRRCCPDLP SLVQKLFRLR+V+K V +    +S+AD   EQ R +RVSAK+
Sbjct: 82   QGATAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTA--EISSADASAEQHRLRRVSAKD 139

Query: 254  SMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGG 433
             ++ G+++ + V L++ +     +   N  E +F+R LE+YKDEAIIV+NKPPG+P QGG
Sbjct: 140  QLMPGDILFLPVNLKESSVAEKTKKFDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQGG 199

Query: 434  VGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGA 613
            VGIK S+D LA+   E   SE PRLVHRLDRD SG+LVLGR Q ST++LH++FREKT+ A
Sbjct: 200  VGIKNSIDVLAS-MFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADA 258

Query: 614  LSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSL 793
            L++   GTQ  +QRKY+ALVIGTPRHP+GL+SA LAKI+L+DGKSER+ I  +  + S  
Sbjct: 259  LAD---GTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTIRASSNAASVQ 315

Query: 794  HALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPI 973
             ALTEY++I S  QG+TWLELFP TGRKHQLRVHCA++LGTPIVGD KYGR+ + K  P+
Sbjct: 316  DALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKWMPL 375

Query: 974  HLPQSVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD-- 1147
             LP+++ + E + K KLPFGL + GGSI+++ P++HLHCKQMVLP+VS+AL +LQS D  
Sbjct: 376  PLPRTIDE-ELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMVLPDVSVALHRLQSSDVN 434

Query: 1148 HDFSQVEKLNLVAPLPPHMQKSWEILNSL 1234
             DFS +EKLN VAPLP HM+ SWEIL S+
Sbjct: 435  PDFSDLEKLNFVAPLPLHMRLSWEILKSV 463


>gb|EEC84066.1| hypothetical protein OsI_30347 [Oryza sativa Indica Group]
          Length = 465

 Score =  444 bits (1143), Expect = e-122
 Identities = 231/389 (59%), Positives = 300/389 (77%), Gaps = 3/389 (0%)
 Frame = +2

Query: 77   ESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNAD-HPEQGRFKRVSAKE 253
            +  TA+KWVRRCCPDLP SLVQKLFRLR+V+K V +    +S+AD   EQ R +RVSAK+
Sbjct: 82   QGATAIKWVRRCCPDLPTSLVQKLFRLRKVKKNVVTA--EISSADASAEQHRLRRVSAKD 139

Query: 254  SMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGG 433
             ++ G+++ + V L++ +     +   N  E +F+R LE+YKDEAIIV+NKPPG+P QGG
Sbjct: 140  QLMPGDILFLPVNLKESSVAEKTKKFDNRNEINFLRGLEIYKDEAIIVVNKPPGMPVQGG 199

Query: 434  VGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGA 613
            VGIK S+D LA+   E   SE PRLVHRLDRD SG+LVLGR Q ST++LH++FREKT+ A
Sbjct: 200  VGIKNSIDVLAS-MFEENSSEAPRLVHRLDRDCSGILVLGRNQLSTSMLHAIFREKTADA 258

Query: 614  LSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSL 793
            L++   GTQ  +QRKY+ALVIGTPRHP+GL+SA LAKI+L+DGKSER+ +  +  + S  
Sbjct: 259  LAD---GTQHVLQRKYVALVIGTPRHPKGLLSAPLAKILLQDGKSERLTVRASSNAASVQ 315

Query: 794  HALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPI 973
             ALTEY++I S  QG+TWLELFP TGRKHQLRVHCA++LGTPIVGD KYGR+ + K  P+
Sbjct: 316  DALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQKWMPL 375

Query: 974  HLPQSVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD-- 1147
             LP+++ + E + K KLPFGL + GGSI+++ P++HLHCKQMVLP+VS+AL +LQS D  
Sbjct: 376  PLPRTIDE-ELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMVLPDVSVALHRLQSSDVN 434

Query: 1148 HDFSQVEKLNLVAPLPPHMQKSWEILNSL 1234
             DFS +EKLN VAPLP HM+ SWEIL S+
Sbjct: 435  PDFSDLEKLNFVAPLPLHMRLSWEILKSV 463


>ref|XP_003576723.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like
            [Brachypodium distachyon]
          Length = 465

 Score =  441 bits (1133), Expect = e-121
 Identities = 229/389 (58%), Positives = 293/389 (75%), Gaps = 2/389 (0%)
 Frame = +2

Query: 74   TESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKE 253
            T S TA++WVRRCCPDLP SLVQKLFRLR+V+K   +  E  S     EQ + KRVSAK+
Sbjct: 81   TSSSTAIRWVRRCCPDLPASLVQKLFRLRKVKKNALTA-ETSSTDASAEQFQLKRVSAKD 139

Query: 254  SMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGG 433
             ++ G+ + + V +Q+ +     R   N  E  F+RSLE+YKD+AIIVINKPPG+P QGG
Sbjct: 140  YLLPGDTLFLPVNIQESSVAEKTRKFDNRNEIDFLRSLEIYKDKAIIVINKPPGMPVQGG 199

Query: 434  VGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGA 613
            VGIK S+D LA    E   SE PRLVHRLDRD SGVLVLGRTQ S ++LH++FREKT+ A
Sbjct: 200  VGIKNSIDVLAP-MFEENSSEAPRLVHRLDRDCSGVLVLGRTQLSASILHAIFREKTADA 258

Query: 614  LSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSL 793
            L++   GTQ+ +QRKY+ALVIGTPRH +GL+SA LAK++L+DGKSER+ +     +TS  
Sbjct: 259  LAD---GTQQVLQRKYVALVIGTPRHSKGLLSAPLAKVLLQDGKSERLTVKAGPNTTSVQ 315

Query: 794  HALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPI 973
             ALTEY++I S  QGFTWLELFPLTGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+
Sbjct: 316  DALTEYRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWSPL 375

Query: 974  HLPQSVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSK--D 1147
              PQ++ + E + K +LPFGL L GGS+ ++ P++HLHCKQMVLP++S A+Q LQS+  D
Sbjct: 376  PAPQAI-EEELLKKRRLPFGLVLGGGSVVEEQPQLHLHCKQMVLPDISAAVQGLQSEDAD 434

Query: 1148 HDFSQVEKLNLVAPLPPHMQKSWEILNSL 1234
             DFS +EKL+ VAPLP HM+ SWE+L S+
Sbjct: 435  RDFSDLEKLSFVAPLPQHMRLSWEVLKSV 463


>dbj|BAK06727.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 472

 Score =  439 bits (1128), Expect = e-120
 Identities = 229/401 (57%), Positives = 300/401 (74%), Gaps = 2/401 (0%)
 Frame = +2

Query: 38   GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 217
            G E+ G      + + TA++WVRRCCPDLP SLVQKLFRLR+V+K   +  E  S     
Sbjct: 82   GDEIEG------SSNSTAIRWVRRCCPDLPASLVQKLFRLRKVKKNAVTA-ETSSTHASA 134

Query: 218  EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 397
            EQ R +RVSAK+ ++ G+ + + V +Q+ +     R   N  E  F+RSLE+YKD+AIIV
Sbjct: 135  EQFRLRRVSAKDHLLPGDTLFLPVNIQESSVAEKARKFDNRNEIDFLRSLEIYKDKAIIV 194

Query: 398  INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 577
            +NKPPG+P QGGVGIK S+D LA    E   S+ PRLVHRLDRD SGVLVLGRTQ S ++
Sbjct: 195  VNKPPGMPVQGGVGIKNSIDVLAP-MFEENSSDAPRLVHRLDRDCSGVLVLGRTQLSASI 253

Query: 578  LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 757
            LH++FREKT+ AL++   GTQ+ +QRKY+ALV+GTPRHP+GL+SA LAK++L+DGKSER+
Sbjct: 254  LHAIFREKTADALAD---GTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERL 310

Query: 758  IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDK 937
             +     +TS   ALTEY++I S  QGFTWLELFPLTGRKHQLRVHCA++LGTPIVGD K
Sbjct: 311  TVRAGPNTTSVQDALTEYRVIESCPQGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYK 370

Query: 938  YGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVS 1117
            YGR+ +    P+ + Q+V K E + K++LPFGL L GGSI+++ P++HLHCKQM+LP++S
Sbjct: 371  YGRQAHQDWTPLPVSQTVDK-ELLRKQRLPFGLVLGGGSIAEQQPQLHLHCKQMMLPDIS 429

Query: 1118 IALQQLQSK--DHDFSQVEKLNLVAPLPPHMQKSWEILNSL 1234
             A+Q LQS+  D DFS +EKL+ VAPLP HM+ SWE+L S+
Sbjct: 430  AAVQGLQSEDADRDFSDLEKLSFVAPLPLHMRLSWEVLKSV 470


>ref|XP_002518674.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223542055|gb|EEF43599.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 536

 Score =  436 bits (1120), Expect = e-119
 Identities = 224/401 (55%), Positives = 300/401 (74%), Gaps = 3/401 (0%)
 Frame = +2

Query: 38   GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 217
            GK LS      A+   TALKWV RCCP+LP +LVQKLFRLRQV++      E L+  D  
Sbjct: 144  GKALSATATAKASTETTALKWVLRCCPELPRNLVQKLFRLRQVKR------ELLNVGDGE 197

Query: 218  EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 397
             + + KRV+AK+ M +G+ I + +++Q L  E+  +    + E +F+R LELYKDEAIIV
Sbjct: 198  MEHKTKRVAAKDLMNVGDRIFLPISVQALPFEKQ-KCHCGEKEANFIRGLELYKDEAIIV 256

Query: 398  INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 577
            +NKPPG+P QGG+GIK S DELAA+CL Y+ SEPPRLVHRLDRDSSG+LV+GRTQ+ST V
Sbjct: 257  VNKPPGMPVQGGIGIKSSFDELAASCLSYDYSEPPRLVHRLDRDSSGILVMGRTQTSTMV 316

Query: 578  LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 757
            LHS+FREKT  A ++DI   +R +QRKY ALVIG+PR  +G+ISA L K+V++DGKS+RI
Sbjct: 317  LHSVFREKTFAASNHDIGERRRILQRKYWALVIGSPRRQKGIISAPLGKVVVDDGKSDRI 376

Query: 758  IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDK 937
             + +N  STS  HA+T+Y+++  SS G+ WLEL P+TGRKHQLRVHCA++LGTPIVGD K
Sbjct: 377  TVVENAESTSFQHAVTQYRVM-ESSHGYAWLELSPITGRKHQLRVHCAEVLGTPIVGDYK 435

Query: 938  YGRRENMKLEPIHLP--QSVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPN 1111
            YG + + K + +  P  + ++    + K+ LPFG++L  GSIS+K PR+HLHCKQMVLP+
Sbjct: 436  YGWQVHRKWKQLPFPNLEKISNENALCKKILPFGIDLESGSISEKHPRLHLHCKQMVLPD 495

Query: 1112 VSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHMQKSWEILNS 1231
            VS AL+ +Q S ++DFS ++ + L APLP +MQ+SW+ILNS
Sbjct: 496  VSQALRGVQTSSNYDFSDLKSIELDAPLPSYMQRSWDILNS 536


>ref|XP_006346360.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Solanum
            tuberosum]
          Length = 467

 Score =  434 bits (1117), Expect = e-119
 Identities = 229/404 (56%), Positives = 296/404 (73%), Gaps = 6/404 (1%)
 Frame = +2

Query: 38   GKELSGLRPPA---ATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNA 208
            G+EL+G++      +T +MTALKWV+RCCP+LP SLVQKLFRLRQVR+          ++
Sbjct: 74   GRELAGVKMDVKENSTNTMTALKWVQRCCPELPKSLVQKLFRLRQVRR----------DS 123

Query: 209  DHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEA 388
             + E+ R KRVSAKESM +G+ I + +T+QK  +E+      ++ E  FV SLELYKD  
Sbjct: 124  SNVEEQRPKRVSAKESMNVGDRIFLPITVQKFPSEKVVYYPSSEEERKFVHSLELYKDPE 183

Query: 389  IIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSS 568
            I+V+NKPPG+P QGG+GIK S+DELAA  + +E SE PRLVHRLDRD SG+LV+GRTQ S
Sbjct: 184  IVVVNKPPGMPVQGGIGIKRSLDELAAKYMRHEYSEAPRLVHRLDRDCSGLLVMGRTQLS 243

Query: 569  TAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKS 748
             + LHS+FREKT  + + D+   +R +Q+KY ALVIG PR   G+ISA L K+VL++GKS
Sbjct: 244  ASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKS 303

Query: 749  ERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 928
            ERI I  + R+ S+ +A+TEY++IGSS +G+TWLEL PLTGRKHQLRVHCA+ LGTPIVG
Sbjct: 304  ERITIMSDVRAPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVG 363

Query: 929  DDKYGRRENMKLEPIHLPQSVTK-SEDIPKEKL-PFGLNLNGGSISDKWPRMHLHCKQMV 1102
            D KYG + + KL+ + LP SV      IP++K  PF L L  GSISDK P +HLHCK+MV
Sbjct: 364  DYKYGWQAHRKLKHLPLPTSVLNLGVQIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMV 423

Query: 1103 LPNVSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHMQKSWEILNS 1231
            LPN+S+ALQ+ Q   D D   VE + LVAPLP HMQKSW+ L+S
Sbjct: 424  LPNISLALQRAQVVSDTDLVDVESIKLVAPLPFHMQKSWDCLSS 467


>gb|EMT04250.1| RNA pseudourine synthase 4, mitochondrial [Aegilops tauschii]
          Length = 468

 Score =  434 bits (1116), Expect = e-119
 Identities = 226/401 (56%), Positives = 298/401 (74%), Gaps = 2/401 (0%)
 Frame = +2

Query: 38   GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 217
            G E+ G        + TA++WVRRCCP LP SLVQKLFRLR+V+K   +  E  S     
Sbjct: 78   GDEIEG------NSNSTAIRWVRRCCPHLPASLVQKLFRLRKVKKNAVTA-ETSSTDASA 130

Query: 218  EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 397
            EQ R +RVSAK+ ++ G+ + + V +Q+       R   N  E  F+RSLE+YKD+AIIV
Sbjct: 131  EQFRLRRVSAKDHLVPGDTLFLPVNIQESPVAEKARKFDNRNEIDFLRSLEIYKDKAIIV 190

Query: 398  INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 577
            +NKPPG+P QGGVGIK S+D LA    E   S+ PRLVHRLDRD SGVLVLGRTQ S ++
Sbjct: 191  VNKPPGMPVQGGVGIKNSIDVLAP-MFEENSSDAPRLVHRLDRDCSGVLVLGRTQLSASI 249

Query: 578  LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 757
            LH++FREKT+ AL++   GTQ+ +QRKY+ALV+GTPRHP+GL+SA LAK++L+DGKSER+
Sbjct: 250  LHAIFREKTADALAD---GTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERL 306

Query: 758  IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDK 937
             +     +TS   ALTEY++I S  +GFTWLELFPLTGRKHQLRVHCA++LGTPIVGD K
Sbjct: 307  TVRAGPNTTSVQDALTEYRVIESCPRGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYK 366

Query: 938  YGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVS 1117
            YGR+ +    P+ +PQ+V + E + K++LPFGL L GGS++++ P++HLHCKQM+LP++S
Sbjct: 367  YGRQAHQDWTPLPVPQTVDE-ELLRKQRLPFGLVLGGGSVAEEQPQLHLHCKQMMLPDIS 425

Query: 1118 IALQQLQSKD--HDFSQVEKLNLVAPLPPHMQKSWEILNSL 1234
             A+Q LQS+D   DFS +EKL+ VAPLP HM+ SWE+L S+
Sbjct: 426  AAVQGLQSEDAERDFSGLEKLSFVAPLPLHMRLSWEVLKSV 466


>gb|EMS51241.1| RNA pseudourine synthase 4, mitochondrial [Triticum urartu]
          Length = 468

 Score =  432 bits (1112), Expect = e-118
 Identities = 225/401 (56%), Positives = 298/401 (74%), Gaps = 2/401 (0%)
 Frame = +2

Query: 38   GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 217
            G E+ G      + + TA++WVRRCCP LP SLVQKLFRLR+V+K   +  E  S     
Sbjct: 78   GDEIEG------SSNSTAIRWVRRCCPHLPASLVQKLFRLRKVKKNAVTA-ETSSTDASA 130

Query: 218  EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 397
            +Q R +RVSAK+ ++ G+ + + V +Q+       R   N  E  F+RSLE+YKD+AIIV
Sbjct: 131  KQFRLRRVSAKDHLVPGDTLFLPVNIQESPVAEKARKFDNRNEIDFLRSLEIYKDKAIIV 190

Query: 398  INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 577
            +NKPPG+P QGGVGIK S+D LA    E   S+ PRLVHRLDRD SGVLVLGRTQ S ++
Sbjct: 191  VNKPPGMPVQGGVGIKNSIDVLAP-MFEENSSDAPRLVHRLDRDCSGVLVLGRTQLSASI 249

Query: 578  LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 757
            LH++FREKT+ AL++   GTQ+ +QRKY+ALV+GTPRHP+GL+SA LAK++L+DGKSER+
Sbjct: 250  LHAIFREKTADALAD---GTQQVLQRKYVALVMGTPRHPKGLLSAPLAKVLLQDGKSERL 306

Query: 758  IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDK 937
             +     +TS   ALTEY++I S  +GFTWLELFPLTGRKHQLRVHCA++LGTPIVGD K
Sbjct: 307  TVRAGPNTTSVQDALTEYRVIESCPRGFTWLELFPLTGRKHQLRVHCAEVLGTPIVGDYK 366

Query: 938  YGRRENMKLEPIHLPQSVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVS 1117
            YGR+ +    P+ +PQ+V + E + K++LPFGL L GGS++++ P++HLHCKQM+LP++S
Sbjct: 367  YGRQAHQDWTPLPVPQTVDE-ELLRKQRLPFGLVLGGGSVAEEQPQLHLHCKQMMLPDIS 425

Query: 1118 IALQQLQSKD--HDFSQVEKLNLVAPLPPHMQKSWEILNSL 1234
             A Q LQS+D   DFS +EKL+ VAPLP HM+ SWE+L S+
Sbjct: 426  TAFQGLQSEDAERDFSGLEKLSFVAPLPLHMRLSWEVLKSV 466


>ref|XP_004230733.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Solanum
            lycopersicum]
          Length = 467

 Score =  432 bits (1111), Expect = e-118
 Identities = 228/404 (56%), Positives = 296/404 (73%), Gaps = 6/404 (1%)
 Frame = +2

Query: 38   GKELSGLRPPA---ATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNA 208
            G+EL+G++      +T +MTALKWV+RCCP+LP SLVQKLFRLRQVR+          ++
Sbjct: 74   GRELAGVKMDVNENSTNTMTALKWVQRCCPELPKSLVQKLFRLRQVRR----------DS 123

Query: 209  DHPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEA 388
             + E+ R KRVSAKESM +G+ I + +T+QK  +E+      ++ E  FV SLELYKD  
Sbjct: 124  SNVEEQRPKRVSAKESMNVGDRIFLPITVQKFPSEKVVYYPSSEEERKFVHSLELYKDAE 183

Query: 389  IIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSS 568
            IIV+NKPPG+P QGG+GIK S+DELAA  + ++ SE PRLVHRLDRD SG+LV+GRTQ S
Sbjct: 184  IIVVNKPPGMPVQGGIGIKRSLDELAAKYMSHQYSEAPRLVHRLDRDCSGLLVMGRTQLS 243

Query: 569  TAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKS 748
             + LHS+FREKT  + + D+   +R +Q+KY ALVIG PR   G+ISA L K+VL++GKS
Sbjct: 244  ASALHSIFREKTFDSQNEDLESKKRILQKKYWALVIGCPRRSGGIISAPLGKLVLDNGKS 303

Query: 749  ERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVG 928
            ERI I  + R  S+ +A+TEY++IGSS +G+TWLEL PLTGRKHQLRVHCA+ LGTPIVG
Sbjct: 304  ERITIMSDVREPSAQYAVTEYRIIGSSEKGYTWLELSPLTGRKHQLRVHCAEALGTPIVG 363

Query: 929  DDKYGRRENMKLEPIHLPQSVTK-SEDIPKEKL-PFGLNLNGGSISDKWPRMHLHCKQMV 1102
            D KYG + + KL+ + LP SV     +IP++K  PF L L  GSISDK P +HLHCK+MV
Sbjct: 364  DYKYGWQAHRKLKHLPLPTSVLNLVVEIPRQKPDPFNLRLGNGSISDKQPHLHLHCKEMV 423

Query: 1103 LPNVSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHMQKSWEILNS 1231
            LPN+S+ALQ+ Q   D D   VE + LVAPLP HMQKSW+ L++
Sbjct: 424  LPNISLALQRAQVVSDADLVDVESIKLVAPLPFHMQKSWDCLSA 467


>ref|XP_002313876.2| hypothetical protein POPTR_0009s09860g [Populus trichocarpa]
            gi|550331407|gb|EEE87831.2| hypothetical protein
            POPTR_0009s09860g [Populus trichocarpa]
          Length = 471

 Score =  431 bits (1109), Expect = e-118
 Identities = 223/399 (55%), Positives = 295/399 (73%), Gaps = 3/399 (0%)
 Frame = +2

Query: 38   GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 217
            G  LS   P  +    TALKWV RCCP+LP +LVQKLFRLRQVR R S  +E  +  D  
Sbjct: 74   GIALSARIPAKSASETTALKWVLRCCPELPRNLVQKLFRLRQVR-RESPVMESCNLGDQG 132

Query: 218  EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 397
            ++ R KRV+AK+SM +G+ I + ++++ L  E+      N+ E +F+R LELYKD AIIV
Sbjct: 133  QEHRLKRVAAKDSMDVGDRIFLPISVKVLPAEKQD-CHCNEEEINFIRGLELYKDAAIIV 191

Query: 398  INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 577
            +NKPPG+P QGG+GIK S+DEL+A+C   + SEPPRLVHRLDRD SG+LV+GRTQ+S  V
Sbjct: 192  VNKPPGMPVQGGIGIKRSLDELSASCFSSDYSEPPRLVHRLDRDCSGILVMGRTQTSATV 251

Query: 578  LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 757
            LH++FREKT  A ++D+   +R +QRKY ALVIG+PR P+GLISA L K+V+++GKS+RI
Sbjct: 252  LHAIFREKTLAASNDDVGNKRRILQRKYWALVIGSPRRPKGLISAPLGKVVVDNGKSDRI 311

Query: 758  IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDK 937
             + +N ++ SS HA+T+Y++I  SS GFTWLEL PLTGRKHQLRVHCA++LGTPIVGD K
Sbjct: 312  TVVENSQNLSSQHAVTQYRVI-ESSHGFTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYK 370

Query: 938  YGRRENMKLEPIHLPQSVTKSED--IPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPN 1111
            Y  + +   + +        S D  + ++ LPF L+L+ GSIS+K PR+HLHCKQMVLP+
Sbjct: 371  YAWQAHRNWKQLQWSNIEDNSNDKSLSEKILPFALDLDSGSISEKHPRLHLHCKQMVLPD 430

Query: 1112 VSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHMQKSWEIL 1225
            VS ALQ +Q S D+DFSQ+  L   APLPP+M+KSW+IL
Sbjct: 431  VSKALQDVQLSSDYDFSQLASLKFDAPLPPYMKKSWDIL 469


>gb|EOX98365.1| Ribosomal pseudouridine synthase, putative [Theobroma cacao]
          Length = 477

 Score =  431 bits (1107), Expect = e-118
 Identities = 221/403 (54%), Positives = 299/403 (74%), Gaps = 5/403 (1%)
 Frame = +2

Query: 38   GKELSGLRPPAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHP 217
            G +LSG     A    TA+KWV RCCP+LP SLVQKLFRLRQVR R S  +E   +    
Sbjct: 79   GAKLSGKPHSKAANETTAVKWVMRCCPELPRSLVQKLFRLRQVR-RESHVLEVAGDGCQV 137

Query: 218  EQGRFKRVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIV 397
            +  + KRV AK+++ +G+ I +  ++++   E+       + E +F+R LELYKD AIIV
Sbjct: 138  QTVQLKRVGAKDALNIGDRIFLPFSVREFREEKQ-ESGCTEEELNFIRGLELYKDPAIIV 196

Query: 398  INKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAV 577
            +NKPPG+P QGG+GIK+S+D+LAA CL ++ SEPPRLVHRLDRDSSG+LV+GRTQ S  +
Sbjct: 197  LNKPPGMPVQGGIGIKWSLDKLAAACLCFDYSEPPRLVHRLDRDSSGILVMGRTQMSATI 256

Query: 578  LHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERI 757
            LHS+FRE+T+ A  +D+   +R +Q++Y ALVIG+PR P+G+I A L K+V++DGKS+RI
Sbjct: 257  LHSVFREETNDASKDDVDNEKRILQKRYWALVIGSPRRPKGMIVAPLRKVVVDDGKSDRI 316

Query: 758  IIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDK 937
             + DN +  SS  A TEY++I ++S G+TWLEL PLTGRKHQLRVHCA++LGTPIVGD K
Sbjct: 317  TVFDNSQIVSSQRAKTEYQVIKTTSHGYTWLELSPLTGRKHQLRVHCAEVLGTPIVGDYK 376

Query: 938  YGRRENMKLEPIHLPQSVTK---SEDIPKEK-LPFGLNLNGGSISDKWPRMHLHCKQMVL 1105
            YG + + + +  HLP+S  K   ++  P+E  LPFGLN++ GSIS K PR+HLHC++M+ 
Sbjct: 377  YGWQAHRRWQ--HLPESDLKKSSNDKCPEENMLPFGLNMDSGSISAKRPRLHLHCREMIF 434

Query: 1106 PNVSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHMQKSWEILNS 1231
            PNVS ALQ LQ S DHD S+++ L +VAPLP +MQKSW+I+NS
Sbjct: 435  PNVSQALQNLQLSTDHDLSKLKSLEVVAPLPSYMQKSWDIMNS 477


>gb|EMJ01009.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 483

 Score =  429 bits (1102), Expect = e-117
 Identities = 227/409 (55%), Positives = 298/409 (72%), Gaps = 11/409 (2%)
 Frame = +2

Query: 38   GKELSGLRPPAATESMT--ALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNAD 211
            G+++      A+T S T  ALKWV RCCP+LP SLVQKLFRLRQVR R S ++E      
Sbjct: 76   GRDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVR-RESCDMECSGEGV 134

Query: 212  HPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSG------RLKYNDVENSFVRSLEL 373
               +   KRV+AK+SM +G+ I + +++Q+  N++            ++ E +F+RSLEL
Sbjct: 135  EALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLEL 194

Query: 374  YKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLG 553
            YKD AIIVINKPPG+P QGG+GIK S+DELAA CL Y+ SEPPRLVHRLDRDSSG+LV+G
Sbjct: 195  YKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMG 254

Query: 554  RTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVL 733
            RTQ+S  VLHS+FREKT GA +++I   +R +QR+Y ALVIG+PR  +GLISA L K+V+
Sbjct: 255  RTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVV 314

Query: 734  EDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILG 913
            ++GKS+RI I ++ ++  S HA+T+YK+IGS   G+TWLEL PLTGRKHQLRVHCA++L 
Sbjct: 315  DNGKSDRITIVNDSQTLPSQHAITKYKVIGSPCPGYTWLELTPLTGRKHQLRVHCAEVLR 374

Query: 914  TPIVGDDKYGRRENMKLEPIHLPQSVTKS-EDIPKEK-LPFGLNLNGGSISDKWPRMHLH 1087
            TPIVGD KYG + +   +P+    +   S E+ PK K LPF LN+  GS+S+K PR+HLH
Sbjct: 375  TPIVGDYKYGWQTHRNWKPLAWSNNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLH 434

Query: 1088 CKQMVLPNVSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHMQKSWEILNS 1231
            CKQMVLPNV++ALQ ++   D D S++E L LVA LP  MQ+SW I NS
Sbjct: 435  CKQMVLPNVNLALQNVKLHSDSDLSELESLELVAALPSFMQRSWNITNS 483


>ref|XP_006651552.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Oryza
            brachyantha]
          Length = 447

 Score =  426 bits (1095), Expect = e-116
 Identities = 223/384 (58%), Positives = 285/384 (74%), Gaps = 1/384 (0%)
 Frame = +2

Query: 86   TALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMIL 265
            TA+ WVRRCCPDLP SLV KLFRLR+V+K          N    EQ R +RVSAK+ ++ 
Sbjct: 77   TAISWVRRCCPDLPTSLVHKLFRLRKVKK----------NFVTAEQHRLRRVSAKDQLMP 126

Query: 266  GEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIK 445
            G++I + V  ++ +     +   N  E  F+RSLE+YKDEAIIVINKPPG+P QGG+GIK
Sbjct: 127  GDIIFLPVHPKESSIAEKTKKFDNRNEIDFLRSLEIYKDEAIIVINKPPGMPVQGGIGIK 186

Query: 446  YSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSND 625
             S+D LA+   E   SE PRLVHRLDRD SGVLVLGR Q ST +LH+ FREKT+ AL++ 
Sbjct: 187  NSIDVLAS-IFEENSSEAPRLVHRLDRDCSGVLVLGRNQRSTTMLHATFREKTADALAD- 244

Query: 626  ITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALT 805
              GTQ  +QRKYLALVIGTPRHP+GL+SA LAK++L+DGKSER+ +  +  + S   ALT
Sbjct: 245  --GTQHVLQRKYLALVIGTPRHPKGLLSAPLAKVLLQDGKSERLTVRASSNAASVQDALT 302

Query: 806  EYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQ 985
            EY++I     G+TWLELFP TGRKHQLRVHCA++LGTPIVGD KYGR+ +    P+ LP+
Sbjct: 303  EYRVIEYCPHGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWMPLPLPR 362

Query: 986  SVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSK-DHDFSQ 1162
            ++ + E + K KLPFGL + GGSI+++ P++HLHCKQMVLP++S+A+ +LQS  D DFS 
Sbjct: 363  TINE-ELLRKRKLPFGLVVGGGSIAEEQPQLHLHCKQMVLPDISVAVHRLQSDVDPDFSD 421

Query: 1163 VEKLNLVAPLPPHMQKSWEILNSL 1234
            +EKLN VAPLP HM+ SWEIL S+
Sbjct: 422  LEKLNFVAPLPLHMRLSWEILKSV 445


>ref|XP_004956276.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like [Setaria
            italica]
          Length = 465

 Score =  423 bits (1087), Expect = e-115
 Identities = 217/390 (55%), Positives = 290/390 (74%), Gaps = 2/390 (0%)
 Frame = +2

Query: 71   ATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAK 250
            A  + TA++WVRRCCP +P SLVQKLFRLR+V++ + +  +  S     +Q R +RVSAK
Sbjct: 80   ACSNDTAIRWVRRCCPHMPASLVQKLFRLRKVKRNLLTA-DTSSTDGIADQLRLRRVSAK 138

Query: 251  ESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQG 430
            + ++ G+++ +   +Q+ +     +   +  E  F+RSLE+YKD AIIV+NKPPG+P QG
Sbjct: 139  DELVPGDILFLPFNIQESSVSEKTKKFGSKNEIDFLRSLEIYKDRAIIVLNKPPGMPVQG 198

Query: 431  GVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSG 610
            GVGIK S+D LA    E   SE PRLVHRLDRD SGVLVLGRTQ S +++H++FREKT+ 
Sbjct: 199  GVGIKNSIDILAP-LFEDGSSEAPRLVHRLDRDCSGVLVLGRTQLSASIMHAIFREKTAD 257

Query: 611  ALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSS 790
            AL++   GTQ+ +QRKY+ALVIG PRHP+GL+SA LAKIVL+DGKSER+ +       S 
Sbjct: 258  ALAD---GTQQVLQRKYVALVIGRPRHPKGLLSAPLAKIVLQDGKSERLTVCAGSNPASV 314

Query: 791  LHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEP 970
              ALTEY++I S  QG+TWLELFP TGRKHQLRVHCA++LGTPIVGD KYGR+ +    P
Sbjct: 315  QDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWMP 374

Query: 971  IHLPQSVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD- 1147
            + +PQ++   E + K KLPFGL L GGS+++  P++HLHCKQM+LP++S A+Q+LQS + 
Sbjct: 375  LPIPQAM-DVEMLKKRKLPFGLALGGGSVAEDQPQLHLHCKQMILPDISAAMQRLQSSES 433

Query: 1148 -HDFSQVEKLNLVAPLPPHMQKSWEILNSL 1234
             H+FS +EKL+ VAPLP HM+ SWEIL S+
Sbjct: 434  NHNFSDLEKLSFVAPLPLHMRLSWEILKSV 463


>gb|EMJ01008.1| hypothetical protein PRUPE_ppa004969mg [Prunus persica]
          Length = 481

 Score =  422 bits (1084), Expect = e-115
 Identities = 226/409 (55%), Positives = 297/409 (72%), Gaps = 11/409 (2%)
 Frame = +2

Query: 38   GKELSGLRPPAATESMT--ALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNAD 211
            G+++      A+T S T  ALKWV RCCP+LP SLVQKLFRLRQVR R S ++E      
Sbjct: 76   GRDVITKTATASTTSTTTTALKWVTRCCPELPRSLVQKLFRLRQVR-RESCDMECSGEGV 134

Query: 212  HPEQGRFKRVSAKESMILGEVIQITVTLQKLTNERSG------RLKYNDVENSFVRSLEL 373
               +   KRV+AK+SM +G+ I + +++Q+  N++            ++ E +F+RSLEL
Sbjct: 135  EALERPLKRVAAKDSMNVGDRIHLPLSVQEFPNDKQELPNDKKECYCSEEEVTFIRSLEL 194

Query: 374  YKDEAIIVINKPPGLPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLG 553
            YKD AIIVINKPPG+P QGG+GIK S+DELAA CL Y+ SEPPRLVHRLDRDSSG+LV+G
Sbjct: 195  YKDPAIIVINKPPGMPVQGGIGIKRSLDELAAACLSYDFSEPPRLVHRLDRDSSGILVMG 254

Query: 554  RTQSSTAVLHSLFREKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVL 733
            RTQ+S  VLHS+FREKT GA +++I   +R +QR+Y ALVIG+PR  +GLISA L K+V+
Sbjct: 255  RTQTSATVLHSIFREKTFGASNDEIDDAKRILQRRYWALVIGSPRQRKGLISAPLGKVVV 314

Query: 734  EDGKSERIIIADNRRSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILG 913
            ++GKS+RI I ++ ++  S HA+T+YK+IGS    +TWLEL PLTGRKHQLRVHCA++L 
Sbjct: 315  DNGKSDRITIVNDSQTLPSQHAITKYKVIGSPC--YTWLELTPLTGRKHQLRVHCAEVLR 372

Query: 914  TPIVGDDKYGRRENMKLEPIHLPQSVTKS-EDIPKEK-LPFGLNLNGGSISDKWPRMHLH 1087
            TPIVGD KYG + +   +P+    +   S E+ PK K LPF LN+  GS+S+K PR+HLH
Sbjct: 373  TPIVGDYKYGWQTHRNWKPLAWSNNECHSDEEFPKRKNLPFDLNMESGSVSEKNPRLHLH 432

Query: 1088 CKQMVLPNVSIALQQLQ-SKDHDFSQVEKLNLVAPLPPHMQKSWEILNS 1231
            CKQMVLPNV++ALQ ++   D D S++E L LVA LP  MQ+SW I NS
Sbjct: 433  CKQMVLPNVNLALQNVKLHSDSDLSELESLELVAALPSFMQRSWNITNS 481


>ref|XP_004954753.1| PREDICTED: RNA pseudouridine synthase 4, mitochondrial-like, partial
            [Setaria italica]
          Length = 509

 Score =  419 bits (1078), Expect = e-114
 Identities = 216/390 (55%), Positives = 289/390 (74%), Gaps = 2/390 (0%)
 Frame = +2

Query: 71   ATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAK 250
            A  + TA++WVRRCCP +P SLVQKLFRLR+V++ + +  +  S  D  +Q   +RVSAK
Sbjct: 124  ACSNDTAIRWVRRCCPHMPASLVQKLFRLRKVKRNLLTA-DTSSTDDIADQLWLRRVSAK 182

Query: 251  ESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQG 430
            + ++ G+++ +   +Q+ +     +   +  E  F+RSLE+YKD AIIV+NKPPG+P QG
Sbjct: 183  DELVPGDILFLPFNIQESSVSEKTKKFGSKNEIDFLRSLEIYKDRAIIVLNKPPGMPVQG 242

Query: 431  GVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSG 610
            GVGIK S+D LA    E   SE PRLVHRLDRD SGVLVLGRTQ S +++H++FREKT+ 
Sbjct: 243  GVGIKNSIDILAP-LFEDGSSEAPRLVHRLDRDCSGVLVLGRTQLSASIMHAIFREKTAD 301

Query: 611  ALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSS 790
            AL++   GTQ+ +QRKY+ALVIG PRH +GL+SA LAKIVL+DGKSER+ +       S 
Sbjct: 302  ALAD---GTQQVLQRKYVALVIGRPRHSKGLLSAPLAKIVLQDGKSERLTVCAGSNPASV 358

Query: 791  LHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEP 970
              ALTEY++I S  QG+TWLELFP TGRKHQLRVHCA++LGTPIVGD KYGR+ +    P
Sbjct: 359  QDALTEYRVIESCPQGYTWLELFPRTGRKHQLRVHCAEVLGTPIVGDYKYGRQAHQNWMP 418

Query: 971  IHLPQSVTKSEDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQSKD- 1147
            + +PQ++   E + K KLPFGL L GGS+++  P++HLHCKQM+LP++S A+Q+LQS + 
Sbjct: 419  LPIPQAM-DVEMLKKRKLPFGLALGGGSVAEDQPQLHLHCKQMILPDISAAMQRLQSSES 477

Query: 1148 -HDFSQVEKLNLVAPLPPHMQKSWEILNSL 1234
             H+FS +EKL+ VAPLP HM+ SWEIL S+
Sbjct: 478  NHNFSDLEKLSFVAPLPLHMRLSWEILKSV 507


>ref|XP_004305959.1| PREDICTED: RNA pseudourine synthase 4, mitochondrial-like [Fragaria
            vesca subsp. vesca]
          Length = 476

 Score =  417 bits (1072), Expect = e-114
 Identities = 217/395 (54%), Positives = 283/395 (71%), Gaps = 6/395 (1%)
 Frame = +2

Query: 65   PAATESMTALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSS---EIEPLSNADHPEQGRFK 235
            P+A  + TALKWV RCCP++P +LVQKLFRLRQVR+  S     ++PL           K
Sbjct: 83   PSAAAATTALKWVTRCCPEIPRNLVQKLFRLRQVRREASDMDQSVQPL-----------K 131

Query: 236  RVSAKESMILGEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPG 415
            RV  K+SM LG+ I + +++++  + +      ++ E  F+RSL LYKD AIIVINKPPG
Sbjct: 132  RVGTKDSMNLGDRICLPISVKEFPDHKQKEGHCSEEEAEFIRSLVLYKDPAIIVINKPPG 191

Query: 416  LPTQGGVGIKYSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFR 595
            LP QGG+GIK S+DELAA CL Y+ S+PPRLVHRLDRD SG+LV+GRTQ+S  VLHS+FR
Sbjct: 192  LPVQGGIGIKRSLDELAATCLSYDLSQPPRLVHRLDRDCSGILVMGRTQTSATVLHSVFR 251

Query: 596  EKTSGALSNDITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNR 775
            EKT GA  + I   +  +QR+YLALVIG+PR   GLIS  L K+V+++GKS+RI I +  
Sbjct: 252  EKTFGASDDVIKHAKSILQRRYLALVIGSPRQQEGLISVPLGKVVVDNGKSDRITILNKA 311

Query: 776  RSTSSLHALTEYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDKYGRREN 955
            +   S HA+T+YK+IGSS  GFTWLEL PLTGRKHQLRVHCA++LGTPIVGD KYG R +
Sbjct: 312  QCLPSQHAITKYKVIGSSCPGFTWLELIPLTGRKHQLRVHCAEVLGTPIVGDYKYGWRTH 371

Query: 956  MKLEPIHLPQSVTKS--EDIPKEKLPFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQ 1129
               +P+   ++   S  E   ++ LPF LN++ GSI +K  R+HLH KQMVLPNVS+ALQ
Sbjct: 372  KDWKPVAWSKTECHSNEERSKRKNLPFDLNMDSGSIDEKNLRLHLHSKQMVLPNVSLALQ 431

Query: 1130 QLQ-SKDHDFSQVEKLNLVAPLPPHMQKSWEILNS 1231
             ++   + D S +E + LVAP+P +MQKSW+I NS
Sbjct: 432  NVKLHAECDLSGLESIELVAPMPSYMQKSWDITNS 466


>ref|XP_006422925.1| hypothetical protein CICLE_v10028283mg [Citrus clementina]
            gi|557524859|gb|ESR36165.1| hypothetical protein
            CICLE_v10028283mg [Citrus clementina]
          Length = 494

 Score =  416 bits (1069), Expect = e-113
 Identities = 215/386 (55%), Positives = 286/386 (74%), Gaps = 4/386 (1%)
 Frame = +2

Query: 86   TALKWVRRCCPDLPMSLVQKLFRLRQVRKRVSSEIEPLSNADHPEQGRFKRVSAKESMIL 265
            TALKWV +CCP LP + VQKLFRL QVR R S  ++  +N  H ++ + KRV+AK+S+ L
Sbjct: 112  TALKWVLQCCPGLPRNFVQKLFRLSQVR-RESPSLDSSANEGHEQEIKLKRVAAKDSLKL 170

Query: 266  GEVIQITVTLQKLTNERSGRLKYNDVENSFVRSLELYKDEAIIVINKPPGLPTQGGVGIK 445
            G+ I + +++Q+ +  R  +    + E  F++SLELYKD AIIVINKP G+P QGG+GI+
Sbjct: 171  GDRIFLPISIQE-SPSRKEKCPCTEEEVGFIQSLELYKDSAIIVINKPHGMPVQGGIGIR 229

Query: 446  YSVDELAANCLEYEGSEPPRLVHRLDRDSSGVLVLGRTQSSTAVLHSLFREKTSGALSND 625
             S+DELAA CL Y+ SEPPRLVHRLDRDSSG+LV+GRTQ+S  VLHS+FREKT  A   D
Sbjct: 230  RSIDELAATCLTYDYSEPPRLVHRLDRDSSGILVMGRTQTSATVLHSIFREKTFSASKED 289

Query: 626  ITGTQRAIQRKYLALVIGTPRHPRGLISASLAKIVLEDGKSERIIIADNRRSTSSLHALT 805
                +R +QR Y ALV+GTPR  +G+ISA L K+V+++GKS+RI + +N +  S+ HA+T
Sbjct: 290  NDNEKRILQRWYWALVVGTPRCSKGVISAPLRKVVVDNGKSDRITVVNNDQIMSAQHAVT 349

Query: 806  EYKMIGSSSQGFTWLELFPLTGRKHQLRVHCADILGTPIVGDDKYGRRENMKLEPIHLPQ 985
             Y++I  S  G+TWL+L PLTGRKHQLRVHCA++LGTPIVGD KYG + + K +  H P 
Sbjct: 350  RYQVIKPSCHGYTWLKLSPLTGRKHQLRVHCAEVLGTPIVGDYKYGWQTHRKWKQFH-PS 408

Query: 986  SVTK--SEDIPKEK-LPFGLNLNGGSISDKWPRMHLHCKQMVLPNVSIALQQLQ-SKDHD 1153
             + K  +++ PKEK L FGL+L  GSI +K P +HLHCK+M LPNVS A+Q++Q S   D
Sbjct: 409  DLNKDSNDETPKEKTLHFGLDLESGSILEKQPGLHLHCKEMTLPNVSQAIQKVQLSSGCD 468

Query: 1154 FSQVEKLNLVAPLPPHMQKSWEILNS 1231
             S++E L LVAPLP HMQ+SW++LNS
Sbjct: 469  VSKLESLKLVAPLPSHMQRSWDVLNS 494