BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00021966
         (1229 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   345   3e-92
ref|XP_002307429.2| basal transcription factor complex subunit-r...   342   2e-91
gb|EOY16261.1| Basal transcription factor complex subunit-relate...   335   2e-89
ref|XP_006472762.1| PREDICTED: general transcription factor IIH ...   333   9e-89
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   327   6e-87
ref|XP_004290858.1| PREDICTED: general transcription factor IIH ...   325   2e-86
ref|XP_004290857.1| PREDICTED: general transcription factor IIH ...   325   2e-86
gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus pe...   322   2e-85
ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutr...   319   2e-84
ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group] g...   318   2e-84
ref|XP_004952041.1| PREDICTED: general transcription factor IIH ...   318   3e-84
ref|XP_006472763.1| PREDICTED: general transcription factor IIH ...   317   6e-84
ref|XP_003573866.1| PREDICTED: general transcription factor IIH ...   316   1e-83
dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]    315   2e-83
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   314   4e-83
ref|NP_564050.1| basal transcription factor complex subunit-rela...   314   5e-83
ref|XP_006648269.1| PREDICTED: general transcription factor IIH ...   311   3e-82
ref|NP_001131186.1| hypothetical protein [Zea mays] gi|194688300...   311   3e-82
ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Caps...   310   1e-81
ref|XP_006347459.1| PREDICTED: general transcription factor IIH ...   308   3e-81

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
            vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
            product [Vitis vinifera]
          Length = 297

 Score =  345 bits (884), Expect = 3e-92
 Identities = 181/302 (59%), Positives = 204/302 (67%), Gaps = 2/302 (0%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            A  PSKLYS+D       LD NPFFW                TA L FSK L+HV+    
Sbjct: 2    APVPSKLYSDDVSLLVVLLDTNPFFWS---------------TASLPFSKFLSHVLAFLN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAES--ATGKVPAACSKILLRLEEFLTKDR 827
                        +I TG NSC++I+DS    A      G++PA CS +L +LEEF+T D 
Sbjct: 47   SILLINQLNQVVVIATGCNSCNFIFDSSSVPANPNLENGRMPALCSNLLQKLEEFVTGDE 106

Query: 826  LLGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAV 647
             L K+                    LCYIQR+FR+G  HPQPRILCLQGSPDGPEQYVAV
Sbjct: 107  KLSKEV--LAAGIGSSLLSGSLSMALCYIQRVFRTGPLHPQPRILCLQGSPDGPEQYVAV 164

Query: 646  MNAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQ 467
            MNAIF+AQRSM+PIDSCV+G QHSAFLQQASYITGGVYLKPQ LDGLFQYLS+VFATDL 
Sbjct: 165  MNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYITGGVYLKPQQLDGLFQYLSTVFATDLH 224

Query: 466  SRSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDL 287
            SR FLQLP+PAGVDFRASCFCHK TIDMGY+CSVCLSIFCK HKKCSTCGS F  +  D 
Sbjct: 225  SRRFLQLPKPAGVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDG 284

Query: 286  NA 281
            N+
Sbjct: 285  NS 286


>ref|XP_002307429.2| basal transcription factor complex subunit-related family protein
            [Populus trichocarpa] gi|550339079|gb|EEE94425.2| basal
            transcription factor complex subunit-related family
            protein [Populus trichocarpa]
          Length = 298

 Score =  342 bits (876), Expect = 2e-91
 Identities = 174/301 (57%), Positives = 205/301 (68%), Gaps = 2/301 (0%)
 Frame = -2

Query: 1177 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 998
            S PSKLYS+D       LD NPFFW               P + LSFS+ L+HV+     
Sbjct: 3    SVPSKLYSDDVSLVVVLLDTNPFFWT--------------PPSSLSFSQFLSHVLAFVNS 48

Query: 997  XXXXXXXXXXXLITTGVNSCSYIYDSEEGGAE--SATGKVPAACSKILLRLEEFLTKDRL 824
                       +I +G N+C YIYDS    ++  S  G++P+  S +L +LEEF+ KD  
Sbjct: 49   ILLLNQLNQVVVIASGYNTCDYIYDSSSDASQLGSEDGRMPSLYSNLLQKLEEFMIKDEK 108

Query: 823  LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 644
            LGK+  +                  CYIQR+FRSG  HPQPRILCLQGSPDGPEQYVAVM
Sbjct: 109  LGKEQSQRAIKSSLLSGSLSMAL--CYIQRVFRSGPLHPQPRILCLQGSPDGPEQYVAVM 166

Query: 643  NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 464
            NAIF+AQRSM+PIDSC +G  +SAFLQQASYITGGVY+KPQHLDGLFQYL++VFATDL S
Sbjct: 167  NAIFSAQRSMVPIDSCYVGAHNSAFLQQASYITGGVYVKPQHLDGLFQYLTTVFATDLHS 226

Query: 463  RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 284
            RSF+QLPRPAGVDFRASCFCHK TIDMGY+CSVCLSIFC  HKKCSTCGS F  +  D +
Sbjct: 227  RSFIQLPRPAGVDFRASCFCHKTTIDMGYICSVCLSIFCNHHKKCSTCGSVFGQAQSDTS 286

Query: 283  A 281
            +
Sbjct: 287  S 287


>gb|EOY16261.1| Basal transcription factor complex subunit-related isoform 1
            [Theobroma cacao]
          Length = 296

 Score =  335 bits (860), Expect = 2e-89
 Identities = 171/292 (58%), Positives = 198/292 (67%), Gaps = 1/292 (0%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            ASAPSKLY++D       +D NPFFW                 + LSFS+ L+HV+    
Sbjct: 2    ASAPSKLYADDVSLVVVLVDTNPFFWS---------------ASSLSFSQFLSHVLAFLN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAES-ATGKVPAACSKILLRLEEFLTKDRL 824
                        +I TG NSC+YI+DS     +S   G++P  CS +L +LEEFL KD  
Sbjct: 47   AILTLNQLNQVVVIATGYNSCNYIFDSSSDLNQSFENGRMPVMCSSLLQKLEEFLIKDEQ 106

Query: 823  LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 644
            L K+  +                  CYIQR+FRSG  HP PRILCLQGSPDGPEQYVA+M
Sbjct: 107  LSKEVPEGRIKSSLLSGSLSMAL--CYIQRVFRSGALHPHPRILCLQGSPDGPEQYVAIM 164

Query: 643  NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 464
            NAIF+AQRSM+PIDSC MG Q+SAFLQQASYITGGV+ KPQHLDGLFQYL ++FATDL S
Sbjct: 165  NAIFSAQRSMVPIDSCYMGAQNSAFLQQASYITGGVHHKPQHLDGLFQYLMTIFATDLHS 224

Query: 463  RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDF 308
            RSFL LP+P GVDFRASCFCHK TIDMGY+CSVCLSIFCK HKKCSTCGS F
Sbjct: 225  RSFLHLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIFCKHHKKCSTCGSVF 276


>ref|XP_006472762.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X1
            [Citrus sinensis]
          Length = 298

 Score =  333 bits (854), Expect = 9e-89
 Identities = 170/302 (56%), Positives = 200/302 (66%), Gaps = 1/302 (0%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            ASAPSKLYS+D       LD NPFFW                ++ LSFS+ L HV+    
Sbjct: 2    ASAPSKLYSDDVSLVVVLLDTNPFFWS---------------SSSLSFSQFLTHVLAFFN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESA-TGKVPAACSKILLRLEEFLTKDRL 824
                        +I TG NSC Y+YDS   G +S   G++P+ C+ +L  LEEF+ KD  
Sbjct: 47   AILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106

Query: 823  LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 644
            LGK   +                  CYIQR+FRSG  HPQPRILCLQGSPDGPEQYVA+M
Sbjct: 107  LGKQEPEGRIACSLLSGSLSMAL--CYIQRVFRSGLLHPQPRILCLQGSPDGPEQYVAIM 164

Query: 643  NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 464
            NAIF+AQRSM+PIDSC +G Q+SAFLQQASYITGGV+ KPQ LDGLFQYL ++F TDL S
Sbjct: 165  NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 224

Query: 463  RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 284
            R+FLQLP+P GVDFRASCFCHK TIDMGY+CSVCLSI+CK  KKCSTCGS F  +    +
Sbjct: 225  RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSD 284

Query: 283  AP 278
             P
Sbjct: 285  EP 286


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
            sativus]
          Length = 295

 Score =  327 bits (838), Expect = 6e-87
 Identities = 169/301 (56%), Positives = 201/301 (66%), Gaps = 1/301 (0%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            ASAPSKLY++D       LD NPFFW                T+ L FSK L+HV+    
Sbjct: 2    ASAPSKLYADDVSLLVVLLDTNPFFWS---------------TSALPFSKFLSHVLAFLN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESAT-GKVPAACSKILLRLEEFLTKDRL 824
                        +I TG  SC Y+Y+S          G++PA C+++L  LEEF+  D  
Sbjct: 47   SILVLNQLNEVVVIGTGYASCKYLYNSSSYSNHGLEDGRMPALCTRLLKNLEEFVIGDEQ 106

Query: 823  LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 644
              K+  K                  CYIQ++FRSG+ HPQPRILCLQGSPDGPEQYVA+M
Sbjct: 107  SIKEDPKGGTMSSLLSGSLSMAL--CYIQKVFRSGSLHPQPRILCLQGSPDGPEQYVAIM 164

Query: 643  NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 464
            NAIF+AQRSM+PIDSC +G  +SAFLQQASYITGGVYLKPQ +DGLFQYLS+VF TDL S
Sbjct: 165  NAIFSAQRSMVPIDSCYIGSHNSAFLQQASYITGGVYLKPQQMDGLFQYLSTVFGTDLHS 224

Query: 463  RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 284
            R+FLQLP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS F  + ++L+
Sbjct: 225  RTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSVCLSIFCKHHKKCSTCGSVFGETPVELD 284

Query: 283  A 281
            +
Sbjct: 285  S 285


>ref|XP_004290858.1| PREDICTED: general transcription factor IIH subunit 3-like isoform 2
            [Fragaria vesca subsp. vesca]
          Length = 298

 Score =  325 bits (834), Expect = 2e-86
 Identities = 170/299 (56%), Positives = 199/299 (66%), Gaps = 1/299 (0%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            AS PSKLY++D       LD NPFFW                ++ L FSK L+HV+    
Sbjct: 2    ASVPSKLYADDVSLLMVLLDTNPFFWS---------------SSSLPFSKYLSHVLTFLN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSEEG-GAESATGKVPAACSKILLRLEEFLTKDRL 824
                        +I TG +SCSYIYDS    G  S  G++PA CS +L +LEEF+ KD  
Sbjct: 47   SILLLNQLNQVVVIATGYSSCSYIYDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQ 106

Query: 823  LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 644
            L K+                     CYIQ++FRSG +HP PRILCLQGS DGPEQYVA+M
Sbjct: 107  LLKEGSAEGIPSSLLSGSLSMAL--CYIQKVFRSGPQHPHPRILCLQGSSDGPEQYVAIM 164

Query: 643  NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 464
            NAIF+AQRSM+PIDSC MG  +SAFLQQASYITGGVYLKPQ  DGL QYL++VFATDL S
Sbjct: 165  NAIFSAQRSMVPIDSCYMGSNNSAFLQQASYITGGVYLKPQQPDGLLQYLTTVFATDLHS 224

Query: 463  RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDL 287
            R+FLQLP+ AGVDFRASCFCHKKTID GY+CSVCLSIFCK HKKCSTCGS F  +  ++
Sbjct: 225  RAFLQLPKSAGVDFRASCFCHKKTIDTGYICSVCLSIFCKHHKKCSTCGSVFGQAQSEV 283


>ref|XP_004290857.1| PREDICTED: general transcription factor IIH subunit 3-like isoform 1
            [Fragaria vesca subsp. vesca]
          Length = 300

 Score =  325 bits (834), Expect = 2e-86
 Identities = 170/299 (56%), Positives = 199/299 (66%), Gaps = 1/299 (0%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            AS PSKLY++D       LD NPFFW                ++ L FSK L+HV+    
Sbjct: 2    ASVPSKLYADDVSLLMVLLDTNPFFWS---------------SSSLPFSKYLSHVLTFLN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSEEG-GAESATGKVPAACSKILLRLEEFLTKDRL 824
                        +I TG +SCSYIYDS    G  S  G++PA CS +L +LEEF+ KD  
Sbjct: 47   SILLLNQLNQVVVIATGYSSCSYIYDSASAPGQGSDQGRMPALCSHLLKKLEEFVAKDEQ 106

Query: 823  LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 644
            L K+                     CYIQ++FRSG +HP PRILCLQGS DGPEQYVA+M
Sbjct: 107  LLKEGSAEGIPSSLLSGSLSMAL--CYIQKVFRSGPQHPHPRILCLQGSSDGPEQYVAIM 164

Query: 643  NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 464
            NAIF+AQRSM+PIDSC MG  +SAFLQQASYITGGVYLKPQ  DGL QYL++VFATDL S
Sbjct: 165  NAIFSAQRSMVPIDSCYMGSNNSAFLQQASYITGGVYLKPQQPDGLLQYLTTVFATDLHS 224

Query: 463  RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDL 287
            R+FLQLP+ AGVDFRASCFCHKKTID GY+CSVCLSIFCK HKKCSTCGS F  +  ++
Sbjct: 225  RAFLQLPKSAGVDFRASCFCHKKTIDTGYICSVCLSIFCKHHKKCSTCGSVFGQAQSEV 283


>gb|EMJ24450.1| hypothetical protein PRUPE_ppa009386mg [Prunus persica]
          Length = 295

 Score =  322 bits (826), Expect = 2e-85
 Identities = 172/301 (57%), Positives = 201/301 (66%), Gaps = 1/301 (0%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            ASAPSKLY++D       LD NPFFW                ++ L FS  L+HV+    
Sbjct: 2    ASAPSKLYADDVSLLMVLLDTNPFFWS---------------SSSLPFSVFLSHVLTFLN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAE-SATGKVPAACSKILLRLEEFLTKDRL 824
                        +I TG NSCSYIYDS     + S  G++PA C  +L +LEEF+ +D  
Sbjct: 47   SILLLNQLNQVVVIATGYNSCSYIYDSSTSTNQGSDNGRMPARCVNLLQKLEEFVIEDEQ 106

Query: 823  LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 644
            L K+  +                  CYIQR+FRSG  HPQPRILCLQGS DGPEQYVA+M
Sbjct: 107  LIKEGLREGIASSLLSGSLSMAL--CYIQRVFRSGPLHPQPRILCLQGSSDGPEQYVAIM 164

Query: 643  NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 464
            NAIF+AQRS +PIDSC MG  +SAFLQQASYITGGVYLKPQ  +GLFQYLS+VFATDL S
Sbjct: 165  NAIFSAQRS-VPIDSCYMGSSNSAFLQQASYITGGVYLKPQQPNGLFQYLSTVFATDLHS 223

Query: 463  RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 284
            R+FLQLP+  GVDFRASCFCHKKTIDMGY+CSVCLSIFCK HKKCSTCGS F  +  D+N
Sbjct: 224  RAFLQLPKSLGVDFRASCFCHKKTIDMGYICSVCLSIFCKHHKKCSTCGSVFGQAQSDVN 283

Query: 283  A 281
            +
Sbjct: 284  S 284


>ref|XP_006416613.1| hypothetical protein EUTSA_v10008316mg [Eutrema salsugineum]
            gi|557094384|gb|ESQ34966.1| hypothetical protein
            EUTSA_v10008316mg [Eutrema salsugineum]
          Length = 300

 Score =  319 bits (817), Expect = 2e-84
 Identities = 166/300 (55%), Positives = 197/300 (65%), Gaps = 3/300 (1%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            AS  SKLYS+D       LD NPFFW                T  + FS+ L+HV+    
Sbjct: 2    ASVASKLYSDDVSLLVLLLDTNPFFWS---------------TTSIKFSQFLSHVLAFLN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSE---EGGAESATGKVPAACSKILLRLEEFLTKD 830
                        +I TG +SC YIYDS     G  ES+   +PA    +L +LE+F  KD
Sbjct: 47   AVLGLNQLNQVVVIATGYSSCDYIYDSSLTPNGNFESSGSGMPALFGSLLEKLEDFAAKD 106

Query: 829  RLLGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVA 650
              L K+ ++                 LCYIQR+FRSG  HPQPRILCLQGSPDGPEQYVA
Sbjct: 107  EELSKE-EEHEDRIASSLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVA 165

Query: 649  VMNAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDL 470
            VMN+IF+AQR M+PIDSC +G Q+SAFLQQASYITGGV+  P+ LDGLFQYL+++FATDL
Sbjct: 166  VMNSIFSAQRLMVPIDSCYIGTQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDL 225

Query: 469  QSRSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHID 290
             SR F+QLP+P GVDFRASCFCHKKTIDMGY+CSVCLSIFC+ HKKCSTCGS F  S +D
Sbjct: 226  HSRGFVQLPKPVGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 285


>ref|NP_001045748.1| Os02g0125800 [Oryza sativa Japonica Group]
            gi|41053068|dbj|BAD08012.1| putative TFIIH basal
            transcription factor complex p34 subunit [Oryza sativa
            Japonica Group] gi|113535279|dbj|BAF07662.1| Os02g0125800
            [Oryza sativa Japonica Group]
            gi|215768495|dbj|BAH00724.1| unnamed protein product
            [Oryza sativa Japonica Group]
          Length = 289

 Score =  318 bits (816), Expect = 2e-84
 Identities = 165/298 (55%), Positives = 196/298 (65%)
 Frame = -2

Query: 1174 APSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXXX 995
            A SKLYS+D       +D NP FW                TA L F+    H+I      
Sbjct: 2    ASSKLYSDDVSLAVVVVDTNPLFWA---------------TAALPFADFFAHLIHYVNSL 46

Query: 994  XXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLGK 815
                      +I  G++SC+YI+DS +  A  A   V A  +K   +++EF+ +D     
Sbjct: 47   LLLNHLNHVVVIAAGLSSCTYIFDSSDASASGAAD-VAATFAKASRKMDEFIAEDARATS 105

Query: 814  DPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNAI 635
                                 LCYIQR+FRSGTRHPQPRILCLQGSPDGPEQYVAVMN+I
Sbjct: 106  SNGSVADGNAASLLSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSI 165

Query: 634  FTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRSF 455
            F+AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L+GLFQYL++VFATDL SR+F
Sbjct: 166  FSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTF 225

Query: 454  LQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 281
            L+LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS+F+    DLN+
Sbjct: 226  LRLPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNRVMPDLNS 283


>ref|XP_004952041.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X1
            [Setaria italica]
          Length = 291

 Score =  318 bits (815), Expect = 3e-84
 Identities = 168/300 (56%), Positives = 195/300 (65%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            +SA SKLYS+D       +D NPFFW                 A L F+    +++    
Sbjct: 2    SSAHSKLYSDDVSLVVIVVDTNPFFWA---------------AAALPFADFFANLVHFVN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLL 821
                        +I  GV+SCSYI+DS +  A    G V A   K   ++EEF+ +D   
Sbjct: 47   SLLLLNHLNRVVVIAAGVSSCSYIFDSSDASAAGGVG-VTATFDKASRKVEEFIAQDARA 105

Query: 820  GKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMN 641
                                   LCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMN
Sbjct: 106  TAGNGSVVSGNAASLLSGALSLALCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMN 165

Query: 640  AIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSR 461
            +IF+AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L+GLFQYL+ VFATDL SR
Sbjct: 166  SIFSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAVVFATDLHSR 225

Query: 460  SFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 281
            +FL+LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK  KKCSTCGS+FS    DLN+
Sbjct: 226  TFLRLPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKNQKKCSTCGSEFSRVMPDLNS 285


>ref|XP_006472763.1| PREDICTED: general transcription factor IIH subunit 3-like isoform X2
            [Citrus sinensis]
          Length = 293

 Score =  317 bits (812), Expect = 6e-84
 Identities = 165/302 (54%), Positives = 195/302 (64%), Gaps = 1/302 (0%)
 Frame = -2

Query: 1180 ASAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXX 1001
            ASAPSKLYS+D       LD NPFFW                ++ LSFS+ L HV+    
Sbjct: 2    ASAPSKLYSDDVSLVVVLLDTNPFFWS---------------SSSLSFSQFLTHVLAFFN 46

Query: 1000 XXXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESA-TGKVPAACSKILLRLEEFLTKDRL 824
                        +I TG NSC Y+YDS   G +S   G++P+ C+ +L  LEEF+ KD  
Sbjct: 47   AILTLNQLNQVVVIATGYNSCDYVYDSSSTGNQSVGNGRMPSLCATLLQNLEEFMNKDEQ 106

Query: 823  LGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVM 644
            LGK   +                  CYIQR+FRSG  HPQPR     GSPDGPEQYVA+M
Sbjct: 107  LGKQEPEGRIACSLLSGSLSMAL--CYIQRVFRSGLLHPQPR-----GSPDGPEQYVAIM 159

Query: 643  NAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQS 464
            NAIF+AQRSM+PIDSC +G Q+SAFLQQASYITGGV+ KPQ LDGLFQYL ++F TDL S
Sbjct: 160  NAIFSAQRSMVPIDSCYLGAQNSAFLQQASYITGGVHHKPQQLDGLFQYLLTIFGTDLHS 219

Query: 463  RSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLN 284
            R+FLQLP+P GVDFRASCFCHK TIDMGY+CSVCLSI+CK  KKCSTCGS F  +    +
Sbjct: 220  RNFLQLPKPVGVDFRASCFCHKNTIDMGYICSVCLSIYCKHLKKCSTCGSVFGQAQTQSD 279

Query: 283  AP 278
             P
Sbjct: 280  EP 281


>ref|XP_003573866.1| PREDICTED: general transcription factor IIH subunit 3-like
            [Brachypodium distachyon]
          Length = 290

 Score =  316 bits (810), Expect = 1e-83
 Identities = 167/299 (55%), Positives = 196/299 (65%)
 Frame = -2

Query: 1177 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 998
            SA SKLYS+D       +D NPFFW                 A L F+    H+I     
Sbjct: 3    SAHSKLYSDDVSLVVVIVDTNPFFWAG---------------AALPFADFFGHLIHFVNS 47

Query: 997  XXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLG 818
                       +I  GV+SC+Y++DS    A S +  V A  +K   ++EEF+ +D    
Sbjct: 48   LLLLNHLNQVVVIAAGVSSCAYVFDSGNAAA-SGSPDVAATFAKASRKVEEFVKQDARDT 106

Query: 817  KDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNA 638
                                  LCYIQR+FRSGTRHPQPRILCLQGSPDGPEQYVAVMN+
Sbjct: 107  AGNGTVAGGGAASLFSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNS 166

Query: 637  IFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRS 458
            IF+AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L GLFQYL++VFA+DL SR+
Sbjct: 167  IFSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELSGLFQYLAAVFASDLHSRA 226

Query: 457  FLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 281
            FL+LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS+FS    DLN+
Sbjct: 227  FLRLPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSRVMPDLNS 285


>dbj|BAK06937.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 292

 Score =  315 bits (807), Expect = 2e-83
 Identities = 168/300 (56%), Positives = 197/300 (65%), Gaps = 1/300 (0%)
 Frame = -2

Query: 1177 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 998
            SA SKLYS+D       +D NPFFW                 A L F+  L+H+I     
Sbjct: 3    SAHSKLYSDDVSLVVVVVDTNPFFWAG---------------AALPFADFLSHLIHFVNS 47

Query: 997  XXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLG 818
                       +I  GV+SC+Y++DS   GA S T  V     K   +LEE + +D    
Sbjct: 48   LLLLSNLNHVVIIAAGVSSCAYVFDSGNAGA-SGTADVAETLGKASRKLEELIKQDARET 106

Query: 817  KDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNA 638
                                  LCYIQRIFRSG+RHPQPRILC+QGSPDGPEQYVAVMN+
Sbjct: 107  VGNGTVADGGAASLFSGALSLALCYIQRIFRSGSRHPQPRILCVQGSPDGPEQYVAVMNS 166

Query: 637  IFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRS 458
            IF+AQRSM+PID+C++G Q SAFLQQASYITGGVY+KPQ L GLFQYL++VFATDL SR+
Sbjct: 167  IFSAQRSMVPIDTCIVGTQDSAFLQQASYITGGVYMKPQELSGLFQYLAAVFATDLHSRT 226

Query: 457  FLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFS-PSHIDLNA 281
            FL+LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS+FS  S  DLN+
Sbjct: 227  FLRLPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFSRVSMPDLNS 286


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
            lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
            ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  314 bits (805), Expect = 4e-83
 Identities = 165/300 (55%), Positives = 197/300 (65%), Gaps = 4/300 (1%)
 Frame = -2

Query: 1177 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 998
            S  SK YS+D       LD NP FW                T  ++FS+ L+HV+     
Sbjct: 3    SVVSKQYSDDVSLLVLLLDTNPLFWS---------------TTSITFSQFLSHVLAFLNA 47

Query: 997  XXXXXXXXXXXLITTGVNSCSYIYDSE----EGGAESATGKVPAACSKILLRLEEFLTKD 830
                       +I TG +SC YIYDS      G  ES    +PA    +L +LE+F+TKD
Sbjct: 48   VLGLNQLNQVVVIATGYSSCDYIYDSSLTSNHGNLESNGTGMPALFGSLLKKLEDFVTKD 107

Query: 829  RLLGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVA 650
              L ++ +                  LCYIQR+FRSG  HPQPRILCLQGSPDGPEQYVA
Sbjct: 108  EELSRE-EVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVA 166

Query: 649  VMNAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDL 470
            VMN+IF+AQR M+PIDSC +GVQ+SAFLQQASYITGGV+  P+ LDGLFQYL+++FATDL
Sbjct: 167  VMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDL 226

Query: 469  QSRSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHID 290
             SRSF+QLP+P GVDFRASCFCHKKTIDMGY+CSVCLSIFC+ HKKCSTCGS F  S +D
Sbjct: 227  HSRSFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 286


>ref|NP_564050.1| basal transcription factor complex subunit-related protein
            [Arabidopsis thaliana] gi|21537277|gb|AAM61618.1| unknown
            [Arabidopsis thaliana] gi|92856638|gb|ABE77412.1|
            At1g18340 [Arabidopsis thaliana]
            gi|332191584|gb|AEE29705.1| basal transcription factor
            complex subunit-related protein [Arabidopsis thaliana]
          Length = 301

 Score =  314 bits (804), Expect = 5e-83
 Identities = 165/297 (55%), Positives = 195/297 (65%), Gaps = 4/297 (1%)
 Frame = -2

Query: 1168 SKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXXXXX 989
            SK YS+D       LD NP FW                T  ++FS+ L+HV+        
Sbjct: 6    SKQYSDDVSLLVLLLDTNPLFWS---------------TTSITFSQFLSHVLAFLNAVLG 50

Query: 988  XXXXXXXXLITTGVNSCSYIYDSE----EGGAESATGKVPAACSKILLRLEEFLTKDRLL 821
                    +I TG +SC YIYDS      G  ES    +PA    +L +LEEF+TKD  L
Sbjct: 51   LNQLNQVVVIATGYSSCDYIYDSSLTSNHGNFESNGTGMPAIFGSLLKKLEEFVTKDEEL 110

Query: 820  GKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMN 641
             K+ +                  LCYIQR+FRSG  HPQPRILCLQGSPDGPEQYVAVMN
Sbjct: 111  SKE-EVSEDRIPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVAVMN 169

Query: 640  AIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSR 461
            +IF+AQR M+PIDSC +GVQ+SAFLQQASYITGGV+  P+ LDGLFQYL+++FATDL SR
Sbjct: 170  SIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDLHSR 229

Query: 460  SFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHID 290
             F+QLP+P GVDFRASCFCHKKTIDMGY+CSVCLSIFC+ HKKCSTCGS F  S +D
Sbjct: 230  GFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 286


>ref|XP_006648269.1| PREDICTED: general transcription factor IIH subunit 3-like [Oryza
            brachyantha]
          Length = 292

 Score =  311 bits (798), Expect = 3e-82
 Identities = 164/296 (55%), Positives = 198/296 (66%), Gaps = 2/296 (0%)
 Frame = -2

Query: 1162 LYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQ--HHPTAVLSFSKLLNHVIPXXXXXXX 989
            LYS+D       +D NPFFW           +Q  H+  ++L  + L NHV+        
Sbjct: 10   LYSDDISLAVVVVDTNPFFWAGAALPFTDFFAQLIHYVNSLLLLNHL-NHVV-------- 60

Query: 988  XXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLGKDP 809
                    +I  G++SC+YI+DS +  A  A   V A  +K   +++EF+ +D       
Sbjct: 61   --------VIAAGLSSCTYIFDSSDASASGAAD-VAATFAKASRKMDEFIGEDAHATTSS 111

Query: 808  DKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNAIFT 629
                               LCYIQR+FRSGTRHPQPRILCLQGSPDGPEQYVAVMN+IF+
Sbjct: 112  GAVADSNAASLLSGALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFS 171

Query: 628  AQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRSFLQ 449
            AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L GLFQYL++VFATDL SR+FL+
Sbjct: 172  AQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELSGLFQYLAAVFATDLHSRTFLR 231

Query: 448  LPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 281
            LP+  GVDFRASCFCHKKTIDMGYVCSVCLSIFCK HKKCSTCGS+F+    DLN+
Sbjct: 232  LPKTLGVDFRASCFCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNRVMPDLNS 287


>ref|NP_001131186.1| hypothetical protein [Zea mays] gi|194688300|gb|ACF78234.1| unknown
            [Zea mays] gi|194690816|gb|ACF79492.1| unknown [Zea mays]
            gi|224028537|gb|ACN33344.1| unknown [Zea mays]
            gi|413926714|gb|AFW66646.1| hypothetical protein
            ZEAMMB73_940692 [Zea mays]
          Length = 291

 Score =  311 bits (798), Expect = 3e-82
 Identities = 164/299 (54%), Positives = 191/299 (63%)
 Frame = -2

Query: 1177 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 998
            SA SKLYS+D       +D NPFFW                 A L F+    H+I     
Sbjct: 3    SAHSKLYSDDVSLVVVVVDTNPFFWA---------------AAALPFADFFAHLIHFVNS 47

Query: 997  XXXXXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLG 818
                       +I  GV+SC+YI DS +         V     K   + EEF+ +D    
Sbjct: 48   LLLLNHLNRVVVIAAGVSSCAYILDSSDASPSGGVA-VSDTFDKASRKAEEFIAQDARAT 106

Query: 817  KDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNA 638
                                  LCYIQRIFRSG+RHPQPRILCLQGSPDGPEQYVAVMN+
Sbjct: 107  AGNGSVASANAASLLSGALSISLCYIQRIFRSGSRHPQPRILCLQGSPDGPEQYVAVMNS 166

Query: 637  IFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRS 458
            IF+AQRSM+PIDSC++G Q SAFLQQASYITGGVYLKPQ L+GLFQYL++VFATDL SR+
Sbjct: 167  IFSAQRSMVPIDSCIVGTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRA 226

Query: 457  FLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHIDLNA 281
            FL+LP+  GVDFRASCFCHKKTIDMGYVCS+CLSIFCK  KKCSTCGS+FS +  DLN+
Sbjct: 227  FLRLPKTLGVDFRASCFCHKKTIDMGYVCSICLSIFCKNQKKCSTCGSEFSRAMPDLNS 285


>ref|XP_006305456.1| hypothetical protein CARUB_v10009867mg [Capsella rubella]
            gi|482574167|gb|EOA38354.1| hypothetical protein
            CARUB_v10009867mg [Capsella rubella]
          Length = 301

 Score =  310 bits (793), Expect = 1e-81
 Identities = 162/300 (54%), Positives = 195/300 (65%), Gaps = 4/300 (1%)
 Frame = -2

Query: 1177 SAPSKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXX 998
            S  SK Y +D       LD NPFFW                T  ++FS+ L+HV+     
Sbjct: 3    SVASKQYPDDVSLLVLLLDTNPFFWS---------------TTSITFSQFLSHVLAFLNA 47

Query: 997  XXXXXXXXXXXLITTGVNSCSYIYDSE----EGGAESATGKVPAACSKILLRLEEFLTKD 830
                       +I TG +SC YIYDS      G  E     +P   + +L +LE+F+TKD
Sbjct: 48   VLGLNQLNQVVVIATGYSSCEYIYDSSLTSNHGSFERDRTGMPPLFASLLNKLEDFVTKD 107

Query: 829  RLLGKDPDKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVA 650
              L ++ +                  LCYIQR+FRSG  HPQPRILCLQGSPDGPEQYVA
Sbjct: 108  EELSRE-EGNEDRTPSCLLSGSLSMALCYIQRVFRSGHLHPQPRILCLQGSPDGPEQYVA 166

Query: 649  VMNAIFTAQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDL 470
            VMN+IF+AQR M+PIDSC +GVQ+SAFLQQASYITGGV+  P+ LDGLFQYL+++FATDL
Sbjct: 167  VMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASYITGGVHHTPKQLDGLFQYLTTIFATDL 226

Query: 469  QSRSFLQLPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDFSPSHID 290
             SR F+QLP+P GVDFRASCFCHKKTIDMGY+CSVCLSIFC+ HKKCSTCGS F  S +D
Sbjct: 227  HSRGFVQLPKPIGVDFRASCFCHKKTIDMGYICSVCLSIFCEHHKKCSTCGSVFGQSKLD 286


>ref|XP_006347459.1| PREDICTED: general transcription factor IIH subunit 3-like [Solanum
            tuberosum]
          Length = 290

 Score =  308 bits (789), Expect = 3e-81
 Identities = 161/287 (56%), Positives = 188/287 (65%)
 Frame = -2

Query: 1168 SKLYSNDXXXXXXXLDANPFFWXXXXXXXXXXXSQHHPTAVLSFSKLLNHVIPXXXXXXX 989
            SKLY++D       +D NP+FW                    +F K ++HV+        
Sbjct: 6    SKLYADDVSLLMVLVDTNPYFWSSMK------------NTAFTFPKFISHVLAFLNSILL 53

Query: 988  XXXXXXXXLITTGVNSCSYIYDSEEGGAESATGKVPAACSKILLRLEEFLTKDRLLGKDP 809
                    +I TG NSC Y++DS      S +    A C  +L +LE+F+ KD  L ++ 
Sbjct: 54   LNQMNQVVVIATGYNSCDYVFDS------STSSMQRAEC--LLEKLEDFVDKDESLSQED 105

Query: 808  DKXXXXXXXXXXXXXXXXXLCYIQRIFRSGTRHPQPRILCLQGSPDGPEQYVAVMNAIFT 629
                               LCYIQR+FRSG  HPQPRILCL GSPDGP QYVAVMN+IF+
Sbjct: 106  S--VDGVGFSLLSGSLSMALCYIQRVFRSGPLHPQPRILCLHGSPDGPGQYVAVMNSIFS 163

Query: 628  AQRSMIPIDSCVMGVQHSAFLQQASYITGGVYLKPQHLDGLFQYLSSVFATDLQSRSFLQ 449
            AQRSM+PIDSCV+G QHSAFLQQASYITGGVYLKPQ  DGLFQYLS+VFATDL SRSFLQ
Sbjct: 164  AQRSMVPIDSCVIGSQHSAFLQQASYITGGVYLKPQVSDGLFQYLSTVFATDLHSRSFLQ 223

Query: 448  LPRPAGVDFRASCFCHKKTIDMGYVCSVCLSIFCKRHKKCSTCGSDF 308
            LPRP GVDFRASCFCHK TIDMG++CSVCLSIFCK HKKCSTCGS+F
Sbjct: 224  LPRPVGVDFRASCFCHKNTIDMGFICSVCLSIFCKHHKKCSTCGSNF 270