BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00021462
         (3021 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1250   0.0  
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m...  1246   0.0  
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S...  1244   0.0  
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m...  1238   0.0  
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1238   0.0  
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g...  1237   0.0  
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo...  1237   0.0  
emb|CBI27412.3| unnamed protein product [Vitis vinifera]             1230   0.0  
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]        1228   0.0  
gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Tritic...  1227   0.0  
emb|CAE52834.1| RNA polymerase [Hordeum vulgare]                     1224   0.0  
ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays] gi|...  1224   0.0  
sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymeras...  1216   0.0  
emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]        1215   0.0  
gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus pe...  1209   0.0  
ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mi...  1206   0.0  
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]  1205   0.0  
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras...  1204   0.0  
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch...  1203   0.0  
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer...  1202   0.0  

>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
            vinifera]
          Length = 978

 Score = 1250 bits (3234), Expect = 0.0
 Identities = 607/825 (73%), Positives = 700/825 (84%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            E+AAKEY+ELL DMC++KLAPNLPY+KSLFLGWFEP RD +A+EQ+  K  K+R  +AP+
Sbjct: 156  EEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPY 215

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+HLPADMMAVITMHK            SA +V+AAC++GEAIE EVRI RF+       
Sbjct: 216  FDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKS 275

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          V+K+ E L KKV++L+K+Q+  Q+ +I+K QDD KPWGQ A  KVG
Sbjct: 276  ASSNNPDGGSNP--VTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVG 333

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLIELL+ETAY+QPPA Q  D   DIRPAF HT K +IKE  K  R YGVI CDPLVR+
Sbjct: 334  SRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRK 393

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GL+KT RH            +NWTGY KG +LFL SY+MR HGARQQREAIKRAPR+ ++
Sbjct: 394  GLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALE 453

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
              FEAL+TLG+TKWRINKRVL +++RIW+SGG +ADLVDRED+PLPE+PDTEDE E+R W
Sbjct: 454  PAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKW 513

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            KWK+RS++KEN+ERHS+RCD+ELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHP+LNHLG
Sbjct: 514  KWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLG 573

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRGILEFAEGRPLGKSGLRWLKIHLAN+YAGGVDKLSY+GR+AFTE+HLEDIFDSAD
Sbjct: 574  SDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSAD 633

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG RWWL AE P QCLA CINL+EALRSSSPETTISH+ VHQDGSCNGLQHYAALGR
Sbjct: 634  RPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGR 693

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGA AVNLV G+KPADVYSGIAARV +IMQRDAQ+DPA  P+ALRA+LL +QVDRKLV
Sbjct: 694  DKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLV 753

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTY+GAR+QIK+RLKER  IAD+ E++  SCYAAKTTLTALGE+FEAA  
Sbjct: 754  KQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARS 813

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IMSWLGDCAK+IASENH VRW TPLGLPVVQPYR LG++ +KTSLQ+L+L+ ETDKVM K
Sbjct: 814  IMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVK 873

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTAVAC++AGLNFAGVHDSYWTHAC+VD+MN ILREKFVE
Sbjct: 874  RQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVE 933

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLE FQ+SFPTLNFPPLPERGDF+LR+VL+S +FFN
Sbjct: 934  LYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLREVLESPYFFN 978


>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
            [Setaria italica]
          Length = 1005

 Score = 1246 bits (3224), Expect = 0.0
 Identities = 605/825 (73%), Positives = 692/825 (83%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAAKEY+ELL DMC++KLAPNLPY+KSLFLGWFEP RDQ+A+EQE   +  SR  H P+
Sbjct: 181  EQAAKEYRELLTDMCEQKLAPNLPYIKSLFLGWFEPLRDQIAAEQELVANRGSRASHGPY 240

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            FN LPADMMAVITMHK            S  +++AAC +GEAIE EVRIHRFL       
Sbjct: 241  FNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHRFLEKTRKKS 300

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          ++K+ + L KKV  L+K+Q+  Q+ +I+K QDD +PWGQ A AKVG
Sbjct: 301  NKEKENEEEIFDSDIAKEQQRLRKKVTDLMKKQKLRQVRKIVKNQDDSRPWGQDAHAKVG 360

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLIEL +ETA++QPPASQS+D   DIRPAFRH  + + KE+ K  R YGVI CDPLVRQ
Sbjct: 361  SRLIELFIETAHIQPPASQSSDGLPDIRPAFRHEMRTVPKEQQKHSRRYGVIKCDPLVRQ 420

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLD+T +H            + WTGY KG HLFL SY+MRTHGARQQREA+KRAPR+QMQ
Sbjct: 421  GLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQ 480

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
            +VFEAL+TLGSTKWR+NKRVLSI++RIWSSGG +ADLVDR D+PLPEKPDTEDET L+ W
Sbjct: 481  SVFEALNTLGSTKWRVNKRVLSIIDRIWSSGGRLADLVDRTDVPLPEKPDTEDETVLKKW 540

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            +W  RS++K N+ERHS+RCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 541  RWHTRSVKKGNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 600

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRG+LEFAEGRPLG+SGLRWLKIHLANLYAGGVDKLSY GR+AF E+HLE+IFDSAD
Sbjct: 601  SDLCRGVLEFAEGRPLGESGLRWLKIHLANLYAGGVDKLSYAGRIAFAENHLEEIFDSAD 660

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLAVC+NL EALRS SPE TISHI VHQDGSCNGLQHYAALGR
Sbjct: 661  RPLEGKRWWLGAEDPFQCLAVCMNLTEALRSPSPEATISHIPVHQDGSCNGLQHYAALGR 720

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGAIAVNLV G+KPADVYSGIA RV EIM+RD+Q+DP+ +PDA RA+L+  QVDRKLV
Sbjct: 721  DKLGAIAVNLVAGEKPADVYSGIATRVVEIMRRDSQKDPSTDPDAARARLILDQVDRKLV 780

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTYVGAREQIK+RLKERGVIADD EL+  SCYAAK TLTALGE+F+AA  
Sbjct: 781  KQTVMTSVYGVTYVGAREQIKRRLKERGVIADDAELFGASCYAAKVTLTALGEMFQAARS 840

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IM+WLGDCAK+IA EN  V+WTTPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM K
Sbjct: 841  IMNWLGDCAKVIACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 900

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGVHDSYWTHAC+VD MN ILREKFVE
Sbjct: 901  RQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVE 960

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESF++SFP L FPPLPERGDF+++DVL+S +FFN
Sbjct: 961  LYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKDVLESPYFFN 1005


>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
            gi|241924412|gb|EER97556.1| hypothetical protein
            SORBIDRAFT_02g039520 [Sorghum bicolor]
          Length = 976

 Score = 1244 bits (3218), Expect = 0.0
 Identities = 607/826 (73%), Positives = 694/826 (84%), Gaps = 1/826 (0%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAAKEY+ELL DMC++KLAPNLPY+KSLFLGWFEP RDQ+ +EQE   D  SR  H P+
Sbjct: 151  EQAAKEYRELLADMCEQKLAPNLPYIKSLFLGWFEPLRDQIVTEQELVADPGSRASHGPY 210

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            FN LPADMMAVITMHK            S  +++AAC +GEAIE EVRI+RFL       
Sbjct: 211  FNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKS 270

Query: 2659 XXXXXXXXXXXXXT-VSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKV 2483
                         T ++K+ + L KKV  L+K+Q+  Q+  I+K QD+ +PWGQ  QAKV
Sbjct: 271  NKEMEKEEEAAGDTDIAKEQQRLRKKVTDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKV 330

Query: 2482 GSRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVR 2303
            GSRLIEL M+TA++QPPASQS+D   DIRPAFRH  + + KE+ K  R YGVI CDPLVR
Sbjct: 331  GSRLIELFMDTAHIQPPASQSSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVR 390

Query: 2302 QGLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQM 2123
            QGLD+T +H            + WTGY KG HLFL SY+MRTHGARQQREA+KRAPR+QM
Sbjct: 391  QGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQM 450

Query: 2122 QAVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRN 1943
            Q+VFEAL+TLGSTKWR+NKRVLSIV+RIWSSGG +ADLVDR D+PLPEKPDTEDET ++N
Sbjct: 451  QSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVPLPEKPDTEDETLIKN 510

Query: 1942 WKWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 1763
            WKW +RS++KEN+ERHS+RCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHL
Sbjct: 511  WKWHLRSVKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHL 570

Query: 1762 GSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSA 1583
            GSDLCRGILEFAEGRPLGKSGL WLKIHLANLYAGGVDKLSYDGR+AFTE+HLE+IFDSA
Sbjct: 571  GSDLCRGILEFAEGRPLGKSGLHWLKIHLANLYAGGVDKLSYDGRVAFTENHLEEIFDSA 630

Query: 1582 DRPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALG 1403
            DRPLEG+RWWLGAE P QCLAVC+NL EALRSSSPETTISHI VHQDGSCNGLQHYAALG
Sbjct: 631  DRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALG 690

Query: 1402 RDKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKL 1223
            RDKLGAIAVNLV G+KPADVY+GIA RV EIM+ DAQ+DP+ +PD  RA+L+  QVDRKL
Sbjct: 691  RDKLGAIAVNLVAGEKPADVYTGIATRVLEIMRMDAQKDPSIDPDVARARLIVDQVDRKL 750

Query: 1222 VKQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAH 1043
            VKQTVMTSVYGVTYVGAR+QIK+RLKERGVI D+ EL+  SCYAAK TLTALGE+F+AA 
Sbjct: 751  VKQTVMTSVYGVTYVGARDQIKRRLKERGVIPDEAELFGASCYAAKVTLTALGEMFQAAR 810

Query: 1042 RIMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMA 863
             IM+WLGDCAK+IA EN  VRWTTPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM 
Sbjct: 811  GIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMV 870

Query: 862  KRQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFV 683
            KRQ+TAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGVHDSYWTHAC+VD MN ILREKFV
Sbjct: 871  KRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFV 930

Query: 682  ELYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            ELY  PILENLLESF++SFP L FPPLPERGDF++++VL+S +FFN
Sbjct: 931  ELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKEVLESPYFFN 976


>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
            X2 [Oryza brachyantha]
          Length = 839

 Score = 1238 bits (3203), Expect = 0.0
 Identities = 602/825 (72%), Positives = 686/825 (83%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAAKEY+ELL DMC+ KLAPNLPYVKSLFLGWFEP RDQ+ +EQ+   + ++R  HA +
Sbjct: 15   EQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQDLVCERRARASHARY 74

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            FN LPADMMAVITMHK            S  +++AAC +GEAIE EVR+H+FL       
Sbjct: 75   FNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRLHKFLEKPKKKR 134

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          ++K+ E L KKV  L+K+ +  Q+  I+K QD+ KPWGQ   AKVG
Sbjct: 135  SKEMDNEEEVGCSDIAKEQERLRKKVTDLMKKHKLRQVRYIVKKQDNSKPWGQDVHAKVG 194

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLIEL++ETAY+QPPASQSAD   DIRPAF H  + + KE+ K  R YGVI CDPLVRQ
Sbjct: 195  SRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSRRYGVIKCDPLVRQ 254

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLD+T +H            ++WTGY KG HLFL SY+MRTHGARQQREA+KRAPR+QMQ
Sbjct: 255  GLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQ 314

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
            +VFEALDTLGSTKWR+NKRVLSIV+RIWSSGG +ADLVDR D+ LPEKPDTEDE +L+ W
Sbjct: 315  SVFEALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPEKPDTEDEAKLKKW 374

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            +W +++ +KEN+ERHS+RCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 375  RWNLKAAKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 434

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRG+LEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGR+AFTE+HLEDIFDSAD
Sbjct: 435  SDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSAD 494

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLAVCINL EALRS SPET ISHI VHQDGSCNGLQHYAALGR
Sbjct: 495  RPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGR 554

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGAIAVNLV G+KPADVY+GIA RV EIM+ DA +DPA +PDA RA++L  QVDRKLV
Sbjct: 555  DKLGAIAVNLVAGEKPADVYTGIATRVLEIMRNDALKDPATDPDAARARMLVDQVDRKLV 614

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTYVGAREQIK+RLKER +I DD+EL+  SCYAAK TLTALGE+F+AA  
Sbjct: 615  KQTVMTSVYGVTYVGAREQIKRRLKERDMIGDDSELFSASCYAAKVTLTALGEMFQAARS 674

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IM+WLGDCAKIIA EN  V+WTTPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM K
Sbjct: 675  IMNWLGDCAKIIACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 734

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGVHDSYWTHAC+VD MN ILREKFVE
Sbjct: 735  RQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVE 794

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLL SF++SFP L FPPLPERGDF+L+DVL S +FFN
Sbjct: 795  LYDTPILENLLGSFEKSFPELKFPPLPERGDFDLKDVLGSPYFFN 839


>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
            chloroplastic/mitochondrial-like [Brachypodium
            distachyon]
          Length = 992

 Score = 1238 bits (3203), Expect = 0.0
 Identities = 601/825 (72%), Positives = 685/825 (83%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAAKEY+ELL DMC+ KLAPNLPYVKSLFLGWFEP RDQ+ +EQE   +  +R  HAP+
Sbjct: 168  EQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHAPY 227

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            FN LPADMMAVITMHK            S  +++AAC +GEAIE EVRIH+FL       
Sbjct: 228  FNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKN 287

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          ++K+ + L KKV  L+K+Q+  Q+  I+K QD  +PWGQ A AKVG
Sbjct: 288  TKEVDNVVEAGDSDIAKEQQRLRKKVTDLMKKQKIRQVRNIVKKQDSTRPWGQDAHAKVG 347

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLIELL+ETA++QPP SQSAD+  DIRPAF H  + + +E+ K  R YGVI CDPL+RQ
Sbjct: 348  SRLIELLIETAHIQPPVSQSADSTPDIRPAFTHEMRTVTREQQKSSRRYGVIKCDPLIRQ 407

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLD+T +H            ++WTGY KG HLFL SY+MRTHGARQQREA+K+AP++QMQ
Sbjct: 408  GLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQ 467

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             +FEALDTLGSTKWRINK+VLSIV+RIWSSGG +ADLVDR D+ LPEKPDTEDETEL+ W
Sbjct: 468  LIFEALDTLGSTKWRINKKVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDETELKKW 527

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            +W +RS++KEN+ERHS+RCDVELKLAVARKMKDE GFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 528  RWNLRSVKKENSERHSQRCDVELKLAVARKMKDEVGFYYPHNLDFRGRAYPMHPYLNHLG 587

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRG+LEF+EGRPLG SGL WLKIHLANLYAGGVDKLSYDGR+AFTE+HLEDIFDSA+
Sbjct: 588  SDLCRGVLEFSEGRPLGDSGLCWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSAN 647

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLAVC++L EALRSSSPE  ISHI VHQDGSCNGLQHYAALGR
Sbjct: 648  RPLEGKRWWLGAEDPFQCLAVCMDLTEALRSSSPEAMISHIPVHQDGSCNGLQHYAALGR 707

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGAIAVNLV G+KPADVYSGIA RV EIM+RDAQ+DPA +PDA RA+LL  QVDRKLV
Sbjct: 708  DKLGAIAVNLVSGEKPADVYSGIATRVVEIMRRDAQKDPALDPDAARARLLVDQVDRKLV 767

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTYVGAREQIK+RLKERGVI DD+EL+  SCYAAK TLTALGE+FEAA  
Sbjct: 768  KQTVMTSVYGVTYVGAREQIKRRLKERGVIGDDSELFAASCYAAKVTLTALGEMFEAARS 827

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IM+WLGDCAK+IA EN  VRW TPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM K
Sbjct: 828  IMNWLGDCAKVIACENEPVRWMTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 887

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTAVAC + GL FAGVHDSYWTHAC+VD MN ILREKFVE
Sbjct: 888  RQRTAFPPNFVHSLDGSHMMMTAVACNKQGLYFAGVHDSYWTHACDVDTMNKILREKFVE 947

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLL+SF+ SFPTL FPPLPERGDF+L DVL S +FFN
Sbjct: 948  LYDAPILENLLDSFETSFPTLRFPPLPERGDFDLNDVLQSPYFFN 992


>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
            gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
            Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
            single subunit RNA polymerase [Oryza sativa Japonica
            Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
            sativa Japonica Group]
          Length = 1017

 Score = 1237 bits (3201), Expect = 0.0
 Identities = 603/825 (73%), Positives = 687/825 (83%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAA+EY+ELL DMC +KLAPNLPYVKSLFLGWFEP RDQ+ +EQE   +  +R  HA +
Sbjct: 193  EQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARY 252

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            FN LPADMMAVITMHK            S  +++AAC +GEAIE EVRIH+FL       
Sbjct: 253  FNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKS 312

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          ++K+ E L KKV  L+K+Q+  Q+  I+K QD+ KPWGQ A AKVG
Sbjct: 313  NKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVG 372

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLIEL++ETAY+QPPASQSAD   DIRPAF H  + + +E+ K  R YGVI CDPLVRQ
Sbjct: 373  SRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQ 432

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLD+T +H            ++WTGY KG HLFL SY+MRTHGARQQR+A++RAPR+QMQ
Sbjct: 433  GLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQ 492

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
            +VFEAL+TLGSTKWR+NKRVLSIV+RIWSSGG +ADLVDR D+ LPEKPDTEDE +L+ W
Sbjct: 493  SVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKW 552

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            +W +R+ +KEN+ERHS+RCDVELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 553  RWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLG 612

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRG+LEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGR+AFTE+HLEDIFDSAD
Sbjct: 613  SDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSAD 672

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLAVCINL EALRS SPET ISHI VHQDGSCNGLQHYAALGR
Sbjct: 673  RPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGR 732

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGAIAVNLV G+KPADVY+GIA RV EIM+ DA +DPA +PDA RA+LL  QVDRKLV
Sbjct: 733  DKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLV 792

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTYVGAREQIK+RLKER +I DD+EL+  SCYAAK TLTALGE+F+AA  
Sbjct: 793  KQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARS 852

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IM+WLGDCAK+IA EN  VRWTTPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM K
Sbjct: 853  IMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 912

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGVHDSYWTHAC+VD MN ILREKFVE
Sbjct: 913  RQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVE 972

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESF++SFP L FPPLPERGDF+L DVL S +FFN
Sbjct: 973  LYDTPILENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 1017


>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
          Length = 983

 Score = 1237 bits (3201), Expect = 0.0
 Identities = 603/825 (73%), Positives = 687/825 (83%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAA+EY+ELL DMC +KLAPNLPYVKSLFLGWFEP RDQ+ +EQE   +  +R  HA +
Sbjct: 159  EQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHARY 218

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            FN LPADMMAVITMHK            S  +++AAC +GEAIE EVRIH+FL       
Sbjct: 219  FNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKS 278

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          ++K+ E L KKV  L+K+Q+  Q+  I+K QD+ KPWGQ A AKVG
Sbjct: 279  NKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIRQVRNIVKKQDNSKPWGQDAHAKVG 338

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLIEL++ETAY+QPPASQSAD   DIRPAF H  + + +E+ K  R YGVI CDPLVRQ
Sbjct: 339  SRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAREQQKSSRRYGVIKCDPLVRQ 398

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLD+T +H            ++WTGY KG HLFL SY+MRTHGARQQR+A++RAPR+QMQ
Sbjct: 399  GLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQRDAVRRAPREQMQ 458

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
            +VFEAL+TLGSTKWR+NKRVLSIV+RIWSSGG +ADLVDR D+ LPEKPDTEDE +L+ W
Sbjct: 459  SVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRTDVALPEKPDTEDEDKLKKW 518

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            +W +R+ +KEN+ERHS+RCDVELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 519  RWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLG 578

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRG+LEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGR+AFTE+HLEDIFDSAD
Sbjct: 579  SDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSAD 638

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLAVCINL EALRS SPET ISHI VHQDGSCNGLQHYAALGR
Sbjct: 639  RPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDGSCNGLQHYAALGR 698

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGAIAVNLV G+KPADVY+GIA RV EIM+ DA +DPA +PDA RA+LL  QVDRKLV
Sbjct: 699  DKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDALKDPATDPDAARARLLLDQVDRKLV 758

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTYVGAREQIK+RLKER +I DD+EL+  SCYAAK TLTALGE+F+AA  
Sbjct: 759  KQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSELFSASCYAAKVTLTALGEMFQAARS 818

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IM+WLGDCAK+IA EN  VRWTTPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM K
Sbjct: 819  IMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 878

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGVHDSYWTHAC+VD MN ILREKFVE
Sbjct: 879  RQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVE 938

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESF++SFP L FPPLPERGDF+L DVL S +FFN
Sbjct: 939  LYDTPILENLLESFEKSFPELKFPPLPERGDFDLTDVLGSPYFFN 983


>emb|CBI27412.3| unnamed protein product [Vitis vinifera]
          Length = 810

 Score = 1230 bits (3183), Expect = 0.0
 Identities = 597/812 (73%), Positives = 688/812 (84%)
 Frame = -3

Query: 2980 MCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPFFNHLPADMMAVIT 2801
            MC++KLAPNLPY+KSLFLGWFEP RD +A+EQ+  K  K+R  +AP+F+HLPADMMAVIT
Sbjct: 1    MCEQKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVIT 60

Query: 2800 MHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXXXXXXXXXXXXXXX 2621
            MHK            SA +V+AAC++GEAIE EVRI RF+                    
Sbjct: 61   MHKLMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNP- 119

Query: 2620 TVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVGSRLIELLMETAYV 2441
             V+K+ E L KKV++L+K+Q+  Q+ +I+K QDD KPWGQ A  KVGSRLIELL+ETAY+
Sbjct: 120  -VTKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYI 178

Query: 2440 QPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQGLDKTPRHXXXXX 2261
            QPPA Q  D   DIRPAF HT K +IKE  K  R YGVI CDPLVR+GL+KT RH     
Sbjct: 179  QPPADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPY 238

Query: 2260 XXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQAVFEALDTLGSTK 2081
                   +NWTGY KG +LFL SY+MR HGARQQREAIKRAPR+ ++  FEAL+TLG+TK
Sbjct: 239  MPMLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTK 298

Query: 2080 WRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNWKWKIRSIRKENNE 1901
            WRINKRVL +++RIW+SGG +ADLVDRED+PLPE+PDTEDE E+R WKWK+RS++KEN+E
Sbjct: 299  WRINKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSE 358

Query: 1900 RHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLGSDLCRGILEFAEG 1721
            RHS+RCD+ELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHP+LNHLGSDLCRGILEFAEG
Sbjct: 359  RHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEG 418

Query: 1720 RPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSADRPLEGERWWLGAE 1541
            RPLGKSGLRWLKIHLAN+YAGGVDKLSY+GR+AFTE+HLEDIFDSADRPLEG RWWL AE
Sbjct: 419  RPLGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAE 478

Query: 1540 GPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGRDKLGAIAVNLVDG 1361
             P QCLA CINL+EALRSSSPETTISH+ VHQDGSCNGLQHYAALGRDKLGA AVNLV G
Sbjct: 479  DPFQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAG 538

Query: 1360 DKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLVKQTVMTSVYGVTY 1181
            +KPADVYSGIAARV +IMQRDAQ+DPA  P+ALRA+LL +QVDRKLVKQTVMTSVYGVTY
Sbjct: 539  EKPADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTY 598

Query: 1180 VGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHRIMSWLGDCAKIIA 1001
            +GAR+QIK+RLKER  IAD+ E++  SCYAAKTTLTALGE+FEAA  IMSWLGDCAK+IA
Sbjct: 599  IGARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIA 658

Query: 1000 SENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAKRQKTAFPPNFVHS 821
            SENH VRW TPLGLPVVQPYR LG++ +KTSLQ+L+L+ ETDKVM KRQ+TAFPPNFVHS
Sbjct: 659  SENHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHS 718

Query: 820  LDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVELYQKPILENLLES 641
            LDGSHMMMTAVAC++AGLNFAGVHDSYWTHAC+VD+MN ILREKFVELY  PILENLLE 
Sbjct: 719  LDGSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEG 778

Query: 640  FQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            FQ+SFPTLNFPPLPERGDF+LR+VL+S +FFN
Sbjct: 779  FQKSFPTLNFPPLPERGDFDLREVLESPYFFN 810


>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
          Length = 975

 Score = 1228 bits (3178), Expect = 0.0
 Identities = 597/825 (72%), Positives = 688/825 (83%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAA EY+ELL DMC++KLAPNLPYVKSLFLGWFEP RDQ+A+EQE   D  SR  H PF
Sbjct: 151  EQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRDQIATEQELVADPGSRASHGPF 210

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+ LPADMMAVITMHK            S  +++AAC +GEAIE EVRI+RFL       
Sbjct: 211  FSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKN 270

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          ++ + + L KKV  L+K+Q+  Q+  I+K QD  +PWGQ A AKVG
Sbjct: 271  NKEMENEEEAGDTNIAIEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVG 330

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLI+L + TA++QPPASQS+D   DIRPAFRH  + ++KE+ K  R YGVI CDPLVRQ
Sbjct: 331  SRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQ 390

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLD+T +H            + WTGY KG HLFL SY+MRTHGARQQR+A+KRAPR+QMQ
Sbjct: 391  GLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQ 450

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             VFEAL+TLGSTKWR+NKRVLSIV+RIWS+GG +ADLVDR D+P+PEKPDTEDET L+NW
Sbjct: 451  FVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTDVPVPEKPDTEDETLLKNW 510

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            KW +R+ +K+N+ERHS+RCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 511  KWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 570

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRG+LEFAEGRPLGKSGLRWLKIHLANLYA GVDKLSYDGR+AF E+HLE+IFDSAD
Sbjct: 571  SDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYDGRIAFAENHLEEIFDSAD 630

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG RWWLGAE P QCLAVC+NL EALRSSSPETTISHI VHQDGSCNGLQHYAALG+
Sbjct: 631  RPLEGRRWWLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGK 690

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGAIAVNLV G+KPADVY+GIA RV EIM+ DAQ+DP+  PDA RA+L+  QVDRKLV
Sbjct: 691  DKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLV 750

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTY+GAREQI++RLKERGVI +D+EL+  SCYAAK TLTALGE+F+AA  
Sbjct: 751  KQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSELFGASCYAAKVTLTALGEMFQAARS 810

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IM+WLGDCAK+IA EN  VRWTTPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM K
Sbjct: 811  IMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 870

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGVHDSYWTHA +VD MN ILREKFVE
Sbjct: 871  RQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHASDVDTMNKILREKFVE 930

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESF++SFP L FPPLPERGDF++++VL+ST+FFN
Sbjct: 931  LYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKEVLESTYFFN 975


>gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
          Length = 1005

 Score = 1227 bits (3175), Expect = 0.0
 Identities = 595/825 (72%), Positives = 684/825 (82%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAAKEY+ELL DMC+ KLAPNLPYVKSLFL WFEP RDQ+ +EQE   +  +R  HAP+
Sbjct: 182  EQAAKEYRELLADMCEHKLAPNLPYVKSLFLSWFEPLRDQIIAEQELVSERGTRASHAPY 241

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            FN LPADMMAVITMHK            S  +++AAC +GEA+E EVRIH+FL       
Sbjct: 242  FNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKN 301

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          ++K+ E L KKV  L+K+Q+  Q+  ++K QD  +PWGQ A AKVG
Sbjct: 302  TKEVDKVVEAVDADIAKEQERLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVG 361

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLIEL +ETA++QPPASQS D+  +IRPAF H  + + +E+ K RR YGVI CDPLVRQ
Sbjct: 362  SRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVAREQRKSRR-YGVIKCDPLVRQ 420

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLD+T +H            +NWTGY KG HLFL SY+MRTHGARQQREA+K+AP++QMQ
Sbjct: 421  GLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQ 480

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             +FEALD LGSTKWR+NK VLSIV+RIWSSGG +ADLVDR D+ LPEKPDTEDE EL+ W
Sbjct: 481  TIFEALDNLGSTKWRVNKEVLSIVDRIWSSGGRLADLVDRADVSLPEKPDTEDEAELKKW 540

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            +W +RS  KEN+ERHS+RCDVELKLAVARKMK+E GFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 541  RWSMRSAEKENSERHSQRCDVELKLAVARKMKEEAGFYYPHNLDFRGRAYPMHPYLNHLG 600

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRG+LEF+EGRPLG+SGLRWLKIHLANLY GGVDKLSYDGR+AFTE+HL+DIFDSA+
Sbjct: 601  SDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYDGRIAFTENHLDDIFDSAN 660

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWL AE P QCLAVC++L EALRS SPET ISHI VHQDGSCNGLQHYAALGR
Sbjct: 661  RPLEGKRWWLEAEDPFQCLAVCMDLNEALRSPSPETVISHIPVHQDGSCNGLQHYAALGR 720

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGA+AVNLV G+KPADVYSGIAARV EIM+RDAQ+DPAK+ DA RA+LL  QVDRKLV
Sbjct: 721  DKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKDADAARARLLVDQVDRKLV 780

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTYVGAREQIK+RLKERGVIADD+EL+  SCYAAK TLTALGE+FEAA  
Sbjct: 781  KQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELFGASCYAAKVTLTALGEMFEAARS 840

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IM+WLGDCAK+IA EN  VRWTTPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM K
Sbjct: 841  IMTWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 900

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTAVAC++ GL FAGVHDSYWTHAC+VD MN ILREKFVE
Sbjct: 901  RQRTAFPPNFVHSLDGSHMMMTAVACKKQGLYFAGVHDSYWTHACDVDTMNKILREKFVE 960

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESF+ SFP L FPPLPERG+F+++DVL ST+FFN
Sbjct: 961  LYDAPILENLLESFETSFPKLKFPPLPERGNFDMKDVLQSTYFFN 1005


>emb|CAE52834.1| RNA polymerase [Hordeum vulgare]
          Length = 862

 Score = 1224 bits (3168), Expect = 0.0
 Identities = 593/825 (71%), Positives = 685/825 (83%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAAKEY+ELL DMC+ KLAPNLPYVKSLFLGWFEP RDQ+ +EQE   +  +R  HAP+
Sbjct: 40   EQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQELVGERGTRASHAPY 99

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            FN LPADMMAVITMHK            S  +++AAC +GEA+E EVRIH+FL       
Sbjct: 100  FNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAVEHEVRIHKFLEKTKKKN 159

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          ++K+ + L KKV  L+K+Q+  Q+  ++K QD  +PWGQ A AKVG
Sbjct: 160  TKEVDKVVEPGDSDIAKEQQLLRKKVTDLMKKQKIRQVRHLVKKQDSTRPWGQDAHAKVG 219

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLIEL +ETA++QPPASQS D+  +IRPAF H  + + +E+   R  YGVI CDPLVRQ
Sbjct: 220  SRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTVAREQKSRR--YGVIKCDPLVRQ 277

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLD+T +H            +NWTGY KG HLFL SY+MRTHGARQQREA+K+AP++QMQ
Sbjct: 278  GLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQ 337

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             +FEALD LGSTKWR+NKRVLSIV+RIWSSGG +ADLVDR D+ LPEKPDTEDE EL+ W
Sbjct: 338  TIFEALDNLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRADVSLPEKPDTEDEAELKKW 397

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            +W +RS +KEN+ERHS+RCDVELKLAVARKMK+E GFY+PHNLDFRGRAYPMHP+LNHLG
Sbjct: 398  RWSMRSAKKENSERHSQRCDVELKLAVARKMKEEVGFYHPHNLDFRGRAYPMHPYLNHLG 457

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRG+LEF+EGRPLG+SGLRWLKIHLANLY GGVDKLSYDGR+AFTE+HLEDIFDSA+
Sbjct: 458  SDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDKLSYDGRIAFTENHLEDIFDSAN 517

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWL AE P QCLAVC++L EALRSSSPET ISHI VHQDGSCNGLQHYAALGR
Sbjct: 518  RPLEGKRWWLEAEDPFQCLAVCMDLNEALRSSSPETVISHIPVHQDGSCNGLQHYAALGR 577

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGA+AVNLV G+KPADVYSGIAARV EIM+RDAQ+DPAK+ DA RA+LL  QVDR+LV
Sbjct: 578  DKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKDPAKDADAARARLLVDQVDRRLV 637

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTYVGAREQIK+RLKERGVIADD+EL+  SCYAAK TLTALGE+FEAA  
Sbjct: 638  KQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELFGASCYAAKVTLTALGEMFEAARS 697

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IM+WLGDCAK+IA EN  VRW TPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM K
Sbjct: 698  IMNWLGDCAKVIACENEPVRWKTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 757

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTAVAC++ GL FAGVHDSYWTHAC+VD MN ILREKFVE
Sbjct: 758  RQRTAFPPNFVHSLDGSHMMMTAVACKKQGLYFAGVHDSYWTHACDVDTMNKILREKFVE 817

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESF+ SFP L FPPLPERG+F+++DVL ST+FFN
Sbjct: 818  LYDAPILENLLESFETSFPKLKFPPLPERGNFDMKDVLQSTYFFN 862


>ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
            gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA
            polymerase [Zea mays]
          Length = 975

 Score = 1224 bits (3168), Expect = 0.0
 Identities = 597/825 (72%), Positives = 687/825 (83%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            EQAA EY+ELL DMC++KLAPNLPYVKSLFLGWFEP RDQ+A+EQE   D  SR  H PF
Sbjct: 151  EQAANEYRELLADMCEQKLAPNLPYVKSLFLGWFEPLRDQIATEQELVADPGSRASHGPF 210

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+ LPADMMAVITMHK            S  +++AAC +GEAIE EVRI+RFL       
Sbjct: 211  FSMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKN 270

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          ++ + + L KKV  L+K+Q+  Q+  I+K QD  +PWGQ A AKVG
Sbjct: 271  NKEMENEEEAGDTNIAVEQQRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVG 330

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
            SRLI+L + TA++QPPASQS+D   DIRPAFRH  + ++KE+ K  R YGVI CDPLVRQ
Sbjct: 331  SRLIDLFIGTAHIQPPASQSSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQ 390

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLD+T +H            + WTGY KG HLFL SY+MRTHGARQQR+A+KRAPR+QMQ
Sbjct: 391  GLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQ 450

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             VFEAL+TLGSTKWR+NKRVLSIV+RIWS+GG +ADLVDR D+P+PEKPDTEDET L+NW
Sbjct: 451  FVFEALNTLGSTKWRVNKRVLSIVDRIWSNGGRLADLVDRTDVPVPEKPDTEDETLLKNW 510

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            KW +R+ +K+N+ERHS+RCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 511  KWHLRAAKKKNSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 570

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRG+LEFAEGRPLGKSGLRWLKIHLANLYA GVDKLSYDGR+AF E+HLE+IFDSAD
Sbjct: 571  SDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAAGVDKLSYDGRIAFAENHLEEIFDSAD 630

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG RW LGAE P QCLAVC+NL EALRSSSPETTISHI VHQDGSCNGLQHYAALG+
Sbjct: 631  RPLEGRRWRLGAEDPFQCLAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGK 690

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGAIAVNLV G+KPADVY+GIA RV EIM+ DAQ+DP+  PDA RA+L+  QVDRKLV
Sbjct: 691  DKLGAIAVNLVAGEKPADVYTGIANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLV 750

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTY+GAREQI++RLKERGVI +D+EL+  SCYAAK TLTALGE+F+AA  
Sbjct: 751  KQTVMTSVYGVTYIGAREQIRRRLKERGVIPNDSELFGASCYAAKVTLTALGEMFQAARS 810

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IM+WLGDCAK+IA EN  VRWTTPLGLPVVQPYR LG++ +KTSLQ+LTL+ ETDKVM K
Sbjct: 811  IMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVK 870

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQKTAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGVHDSYWTHA +VD MN ILREKFVE
Sbjct: 871  RQKTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHASDVDTMNKILREKFVE 930

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESF++SFP L FPPLPERGDF++++VL+ST+FFN
Sbjct: 931  LYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKEVLESTYFFN 975


>sp|Q8L6J5.2|RPO1B_TOBAC RecName: Full=DNA-directed RNA polymerase 1B, mitochondrial; AltName:
            Full=NictaRpoT1-tom; AltName: Full=T7 bacteriophage-type
            single subunit RNA polymerase 1B; Flags: Precursor
          Length = 1002

 Score = 1216 bits (3145), Expect = 0.0
 Identities = 594/825 (72%), Positives = 685/825 (83%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            E+AAKEYQELLMDMC++KLAPNLPY+KSLFLGWFEP RD +A+EQ+   + K+R  +APF
Sbjct: 182  EEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPF 241

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+ LPA+MMAVITMHK            SA +V+AA  +GEAIE E RIHRFL       
Sbjct: 242  FDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSN 301

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          + K+ E L KKV IL+K+Q+  Q+ +I+K QDD KPWGQ    KVG
Sbjct: 302  ALSGDLEETPGD--MMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVG 359

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
             RLI++LMETAY+QPP  Q  D   DIRPAF HT K +  E  K  R YGVI CDPLVR+
Sbjct: 360  CRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRK 417

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLDKT RH             +W GY KGG+LFL SYIMRTHGA+QQREA+KR P++Q++
Sbjct: 418  GLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLE 477

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             VF+ALDTLG+TKWR+N++VL IV+RIW+SGG +ADLVDRED+PLPE PDTEDE E+R W
Sbjct: 478  PVFQALDTLGNTKWRVNRKVLGIVDRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKW 537

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            KWK++ ++KEN ERHS+RCD+ELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 538  KWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLG 597

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR+AF+E+HLEDIFDSA+
Sbjct: 598  SDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAE 657

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLA CIN+AEALRS SPET IS++ +HQDGSCNGLQHYAALGR
Sbjct: 658  RPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGR 717

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGA AVNLV GDKPADVYSGIAARV +IM+RDA +DPA +P+ +RA+LL  QVDRKLV
Sbjct: 718  DKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLV 777

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTY+GAR+QIKKRLKERGVI DDNEL+  +CYAAKTTLTALGE+FEAA  
Sbjct: 778  KQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARS 837

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IMSWLGDCAKIIA ENH VRWTTPLGLPVVQPYR LG++ +KTSLQILTL+ ETDKVM K
Sbjct: 838  IMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVK 897

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTA+AC+ +GL+FAGVHDSYWTHAC+VDQMN ILREKFVE
Sbjct: 898  RQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVE 957

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESFQQSFP L FPPLPERGDF+LR+VL+S +FFN
Sbjct: 958  LYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>emb|CAC82574.2| phage-type RNA polymerase [Nicotiana tabacum]
          Length = 1002

 Score = 1215 bits (3143), Expect = 0.0
 Identities = 594/825 (72%), Positives = 684/825 (82%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            E+AAKEYQELLMDMC++KLAPNLPY+KSLFLGWFEP RD +A+EQ+   + K+R  +APF
Sbjct: 182  EEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPF 241

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+ LPA+MMAVITMHK            SA +V+AA  +GEAIE E RIHRFL       
Sbjct: 242  FDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASYIGEAIEHEARIHRFLEKTKKSN 301

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          + K+ E L KKV IL+K+Q+  Q+ +I+K QDD KPWGQ    KVG
Sbjct: 302  ALSGDLEETPGD--MMKERERLRKKVKILMKKQKLRQVRKIVKQQDDEKPWGQDNLVKVG 359

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
             RLI++LMETAY+QPP  Q  D   DIRPAF HT K +  E  K  R YGVI CDPLVR+
Sbjct: 360  CRLIQILMETAYIQPPNDQLDDGPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRK 417

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLDKT RH             +W GY KGG+LFL SYIMRTHGA+QQREA+KR P++Q++
Sbjct: 418  GLDKTARHMVIPYMPMLVPPQSWLGYDKGGYLFLPSYIMRTHGAKQQREAVKRVPKKQLE 477

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             VF+ALDTLG+TKWR+N++VL IV RIW+SGG +ADLVDRED+PLPE PDTEDE E+R W
Sbjct: 478  PVFQALDTLGNTKWRVNRKVLGIVNRIWASGGRLADLVDREDVPLPEAPDTEDEAEIRKW 537

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            KWK++ ++KEN ERHS+RCD+ELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 538  KWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLG 597

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRGILEFAEGRPLG SGLRWLKIHLAN+Y GGVDKLSY+GR+AF+E+HLEDIFDSA+
Sbjct: 598  SDLCRGILEFAEGRPLGTSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHLEDIFDSAE 657

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLA CIN+AEALRS SPET IS++ +HQDGSCNGLQHYAALGR
Sbjct: 658  RPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGR 717

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGA AVNLV GDKPADVYSGIAARV +IM+RDA +DPA +P+ +RA+LL  QVDRKLV
Sbjct: 718  DKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLV 777

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTY+GAR+QIKKRLKERGVI DDNEL+  +CYAAKTTLTALGE+FEAA  
Sbjct: 778  KQTVMTSVYGVTYIGARDQIKKRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARS 837

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IMSWLGDCAKIIA ENH VRWTTPLGLPVVQPYR LG++ +KTSLQILTL+ ETDKVM K
Sbjct: 838  IMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVK 897

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTA+AC+ +GL+FAGVHDSYWTHAC+VDQMN ILREKFVE
Sbjct: 898  RQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHACDVDQMNKILREKFVE 957

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESFQQSFP L FPPLPERGDF+LR+VL+S +FFN
Sbjct: 958  LYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
          Length = 1006

 Score = 1209 bits (3127), Expect = 0.0
 Identities = 584/839 (69%), Positives = 683/839 (81%), Gaps = 14/839 (1%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            ++AAKEYQELL DMC++KLAPNLPY+KSLFLGWFEP RD +A++Q+  K   SR  HAP+
Sbjct: 168  QEAAKEYQELLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNSRQSHAPY 227

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSA-PIVKAACNVGEAIEQEVRIHRFL------ 2681
            F+HLPAD MAVITMHK             +  +V+AAC +GEAIE EVRIHRFL      
Sbjct: 228  FDHLPADKMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRFLEKTKKK 287

Query: 2680 -------XXXXXXXXXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQD 2522
                                        ++K+ E L KKVN L+K+Q+  Q+  I+K Q+
Sbjct: 288  KNTIDKKAEADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVRGIVKEQE 347

Query: 2521 DWKPWGQIAQAKVGSRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLR 2342
            D KPWGQ A  KVG RLI+LLM+TAY+QPP  Q  D   DIRPAF H  K I ++  K  
Sbjct: 348  DLKPWGQEAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTITRDTQKTS 407

Query: 2341 RVYGVIVCDPLVRQGLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQ 2162
            R YGVI CDP+VR+G++KT RH            +NWTGY +G +LFL SY+MRTHGA+Q
Sbjct: 408  RRYGVIECDPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVMRTHGAKQ 467

Query: 2161 QREAIKRAPRQQMQAVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLP 1982
            QRE +KR PR+Q++ VFEALDTLGSTKWR+NKRVL +++RIW+SGG +ADLVDRED+PLP
Sbjct: 468  QREVVKRTPRKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVDREDVPLP 527

Query: 1981 EKPDTEDETELRNWKWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFR 1802
            E+PDTEDE E+R WKWK+++ +KEN+ERHS+RCD+ELKLA +RKMKDEEGFYYPHNLDFR
Sbjct: 528  EEPDTEDEAEIRKWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYYPHNLDFR 587

Query: 1801 GRAYPMHPHLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLA 1622
            GRAYPMHP+LNHLGSD+CRGILEF+EGR LGKSGLRWLKIHLANLYAGGVDKLS+D R A
Sbjct: 588  GRAYPMHPYLNHLGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKLSFDDRAA 647

Query: 1621 FTESHLEDIFDSADRPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQD 1442
            FTE+H+++IFDSADRPLEG RWWLGAE P QCLA CINL EALRS SPETTIS++ VHQD
Sbjct: 648  FTENHVDEIFDSADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTISYMPVHQD 707

Query: 1441 GSCNGLQHYAALGRDKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDAL 1262
            GSCNGLQHYAALGRDKLGA AVNLV GDKPADVYSGIAARV +IM+ DA++DPA NP+AL
Sbjct: 708  GSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDPATNPNAL 767

Query: 1261 RAKLLAAQVDRKLVKQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKT 1082
             A+LL  QVDRKLVKQTVMTSVYGVTYVGAR+QIK+RLKERG IADD  L+  +CYAA+T
Sbjct: 768  HARLLINQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAAACYAART 827

Query: 1081 TLTALGEIFEAAHRIMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQ 902
            TLTALGE+FEAA  IMSWLG+CAK+IASEN  VRW TPLGLPVVQPYR LG++ +KTSLQ
Sbjct: 828  TLTALGEMFEAARSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRHLIKTSLQ 887

Query: 901  ILTLKVETDKVMAKRQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACN 722
            +LTL+ ETDKVM KRQ+TAFPPNFVHSLDGSHMMMTAVAC++AGLNFAGVHDSYWTHAC+
Sbjct: 888  VLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDSYWTHACD 947

Query: 721  VDQMNVILREKFVELYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            +D+MN ILREKFVELY+ PILENLLE FQQSFPTL FPPLP+RGDF+LRDVL+S +FFN
Sbjct: 948  IDEMNRILREKFVELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLESPYFFN 1006


>ref|XP_006348633.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial-like [Solanum
            tuberosum]
          Length = 993

 Score = 1206 bits (3120), Expect = 0.0
 Identities = 588/825 (71%), Positives = 682/825 (82%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            E AAKEYQELLMDMC++KLAPNLPY+KSLFLGWFEP RD +A+EQ+   + K+R  +APF
Sbjct: 174  EDAAKEYQELLMDMCEQKLAPNLPYIKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPF 233

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+ LPA+MMAVITMHK            SA +V+AA ++GEAIE E RIHRFL       
Sbjct: 234  FDQLPAEMMAVITMHKLMGLLMTGGGSGSARVVQAASHIGEAIEHEARIHRFLEKTKKNA 293

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          + K+ E L KKV IL+K+Q+  Q+ +I+K QDD KPWGQ    KVG
Sbjct: 294  LDGSLEETAGD---IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVG 350

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
             +LI++L+ETAY+QPP  Q  D   DIRPAF HT K +  E  K  R YGVI CDPLVR+
Sbjct: 351  CKLIQILIETAYIQPPNDQLDDCPPDIRPAFMHTLKTV--ETVKGSRRYGVIQCDPLVRK 408

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLDKT RH             NW+GY +G +LFL SYIMRTHGA+QQREA+KR P++Q++
Sbjct: 409  GLDKTARHMVIPYMPMLVPPQNWSGYDRGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLE 468

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             VF+ALDTLG+TKWR+NKRVL I++RIW+SGG +ADLVDRED+PLPE+PDTEDE E++ W
Sbjct: 469  PVFQALDTLGNTKWRVNKRVLGILDRIWASGGRLADLVDREDVPLPEEPDTEDEEEIKKW 528

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            KWK+++ +KEN ERHS+RCD+ELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 529  KWKVKAAKKENCERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLG 588

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRGILEF+EGRPLGKSGLRWLKIHLAN+Y GGVDKLSY+GR AF+E+H+EDIFDSAD
Sbjct: 589  SDLCRGILEFSEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRAAFSENHVEDIFDSAD 648

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG RWWLGAE P QCLA CIN++EALRS SPET+ISH+ +HQDGSCNGLQHYAALGR
Sbjct: 649  RPLEGRRWWLGAEDPFQCLATCINISEALRSPSPETSISHMPIHQDGSCNGLQHYAALGR 708

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            DKLGA AVNLV GDKPADVYSGIAARV +IM+RDA +DPA +P+ +RA+LL  QVDRKLV
Sbjct: 709  DKLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDADKDPATDPNVMRARLLINQVDRKLV 768

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTY+GAR+QIK+RLKERG I DDNEL+  +CYAAKTTLTALGE+FEAA  
Sbjct: 769  KQTVMTSVYGVTYIGARDQIKRRLKERGAIEDDNELFSAACYAAKTTLTALGEMFEAARS 828

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IMSWLGDCAKIIA EN  VRWTTPLGLPVVQPYR LG++ +KTSLQILTL+ ETDKVM K
Sbjct: 829  IMSWLGDCAKIIAMENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVK 888

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTA+ C+ AGL+FAGVHDSYWTHA +VDQMN ILREKFVE
Sbjct: 889  RQRTAFPPNFVHSLDGSHMMMTAITCKEAGLSFAGVHDSYWTHASDVDQMNKILREKFVE 948

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESFQQSFP L FPPLPERGDF+LR+VL+S +FFN
Sbjct: 949  LYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 993


>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1205 bits (3118), Expect = 0.0
 Identities = 588/825 (71%), Positives = 684/825 (82%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            E+AAKEYQELLMDMC++KLAPNLPY+KSLFLGWFEP RD +A+EQ+   + K+R  +APF
Sbjct: 182  EEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPF 241

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+ LPA+MMAVITMHK            SA +V+AA ++GEAIE E RIHRFL       
Sbjct: 242  FDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSN 301

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          + K+ E L KKV IL+K+Q+  Q+ +I+K QDD KPWGQ    KVG
Sbjct: 302  ALSGDLEDTPGD--IMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVG 359

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
             RLI++LMETAY+QPP  Q  D   DIRPAF HT K +  E  K  R YGVI CDPLVR+
Sbjct: 360  CRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRK 417

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLDKT RH             +W GY KG +LFL SYIMRTHGA+QQREA+KR P++Q++
Sbjct: 418  GLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLE 477

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             VF+ALDTLG+TKWR+N++VL IV+RIW+SGG +ADLVDRED+PLPE+PD EDE ++R W
Sbjct: 478  PVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKW 537

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            KWK++ ++KEN ERHS+RCD+ELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 538  KWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLG 597

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRGILEFAEGRPLGKSGLRWLKIHLAN+Y GGVDKLSY+GR+AF+E+H+EDIFDSA+
Sbjct: 598  SDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAE 657

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLA CIN+AEALRS SPET IS++ +HQDGSCNGLQHYAALGR
Sbjct: 658  RPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGR 717

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            D LGA AVNLV GDKPADVYSGIAARV +IM+RDA +DPA +P+ +RA+LL  QVDRKLV
Sbjct: 718  DTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLV 777

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTY+GAR+QIK+RLKERGVI DDNEL+  +CYAAKTTLTALGE+FEAA  
Sbjct: 778  KQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARS 837

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IMSWLGDCAKIIA ENH VRWTTPLGLPVVQPYR LG++ +KTSLQILTL+ ETDKVM K
Sbjct: 838  IMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVK 897

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTA+AC+ +GL+FAGVHDSYWTHA +VDQMN ILREKFVE
Sbjct: 898  RQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVE 957

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESFQQSFP L FPPLPERGDF+LR+VL+S +FFN
Sbjct: 958  LYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
            Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
            subunit RNA polymerase 1; Flags: Precursor
            gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
            subunit RNA polymerase [Nicotiana sylvestris]
          Length = 1002

 Score = 1204 bits (3115), Expect = 0.0
 Identities = 587/825 (71%), Positives = 684/825 (82%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            E+AAKEYQELLMDMC++KLAPNLPY+KSLFLGWFEP RD +A+EQ+   + K+R  +APF
Sbjct: 182  EEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPF 241

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+ LPA+MMAVITMHK            SA +V+AA ++GEAIE E RIHRFL       
Sbjct: 242  FDQLPAEMMAVITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSN 301

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          + K+ E + KKV IL+K+Q+  Q+ +I+K QDD KPWGQ    KVG
Sbjct: 302  ALSGDLEDTPGD--IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVG 359

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
             RLI++LMETAY+QPP  Q  D   DIRPAF HT K +  E  K  R YGVI CDPLVR+
Sbjct: 360  CRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRK 417

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLDKT RH             +W GY KG +LFL SYIMRTHGA+QQREA+KR P++Q++
Sbjct: 418  GLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLE 477

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             VF+ALDTLG+TKWR+N++VL IV+RIW+SGG +ADLVDRED+PLPE+PD EDE ++R W
Sbjct: 478  PVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKW 537

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            KWK++ ++KEN ERHS+RCD+ELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 538  KWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLG 597

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRGILEFAEGRPLGKSGLRWLKIHLAN+Y GGVDKLSY+GR+AF+E+H+EDIFDSA+
Sbjct: 598  SDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAE 657

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLA CIN+AEALRS SPET IS++ +HQDGSCNGLQHYAALGR
Sbjct: 658  RPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGR 717

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            D LGA AVNLV GDKPADVYSGIAARV +IM+RDA +DPA +P+ +RA+LL  QVDRKLV
Sbjct: 718  DTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLV 777

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTY+GAR+QIK+RLKERGVI DDNEL+  +CYAAKTTLTALGE+FEAA  
Sbjct: 778  KQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARS 837

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IMSWLGDCAKIIA ENH VRWTTPLGLPVVQPYR LG++ +KTSLQILTL+ ETDKVM K
Sbjct: 838  IMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVK 897

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTA+AC+ +GL+FAGVHDSYWTHA +VDQMN ILREKFVE
Sbjct: 898  RQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVE 957

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESFQQSFP L FPPLPERGDF+LR+VL+S +FFN
Sbjct: 958  LYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002


>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
            [Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
            protein product [Vitis vinifera]
          Length = 1035

 Score = 1203 bits (3113), Expect = 0.0
 Identities = 582/826 (70%), Positives = 685/826 (82%), Gaps = 1/826 (0%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            E AAKEY+ELLMDMC++KLAPNLPY+KSLFLGWFEP RD +  EQE  +  K++  +AP+
Sbjct: 210  ELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIVKEQELCRLGKNKAAYAPY 269

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+ LPADMM+VITMHK            S  +V+AAC +G+AIEQEVRIH FL       
Sbjct: 270  FDQLPADMMSVITMHKLVGLLMTGGEHGSTRVVQAACVIGDAIEQEVRIHNFLEKTKRKK 329

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          V  + E L KKV  L+K+Q+ H   +I+K  D+ KPWG  A+AKVG
Sbjct: 330  VGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVG 389

Query: 2479 SRLIELLMETAYVQPPA-SQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVR 2303
            SRLIELLM+TAY+QPP  +Q AD   DIRPAF HT K +++E  K+ R +GVI CDPLV+
Sbjct: 390  SRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTFKTVMREAKKIGRRFGVIECDPLVK 449

Query: 2302 QGLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQM 2123
            +GL++T RH            + WTGY KG HLFL SY+MRTHGARQQREA+KRAPR Q+
Sbjct: 450  KGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPRNQL 509

Query: 2122 QAVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRN 1943
            + VFEAL+TLG+TKWRINKR+  +V+RIW+ GGC+ADLVDR D+PLPEKPDTEDE +LR 
Sbjct: 510  EPVFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRK 569

Query: 1942 WKWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHL 1763
            WKWK++S++K N+ERHS+RCD+ELKLAVARKMKDE+GF+YPHNLDFRGRAYPMHP+LNHL
Sbjct: 570  WKWKVKSVKKANSERHSQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHL 629

Query: 1762 GSDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSA 1583
            GSDLCRGILEFAEGRPLG SGL WLKIHLANL+AGGVDKLS++GR+ FTE+HL+DIFDSA
Sbjct: 630  GSDLCRGILEFAEGRPLGSSGLHWLKIHLANLFAGGVDKLSHEGRITFTENHLDDIFDSA 689

Query: 1582 DRPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALG 1403
            DRPLEG+RWWL AE P Q LA CINL+EALRSSSPETTISHI VHQDGSCNGLQHYAALG
Sbjct: 690  DRPLEGKRWWLNAEDPFQFLAACINLSEALRSSSPETTISHIPVHQDGSCNGLQHYAALG 749

Query: 1402 RDKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKL 1223
            RD+LGA AVNLV G+KPADVYSGIAARV +IM+RDA++DPA  PDALRA++L  QVDRKL
Sbjct: 750  RDQLGATAVNLVAGEKPADVYSGIAARVLDIMKRDAEKDPAIFPDALRARILINQVDRKL 809

Query: 1222 VKQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAH 1043
            VKQTVMTSVYGVTY+GAR+QIK+RLKER  IADD EL+  +CYAAK TLTALGE+F+AA 
Sbjct: 810  VKQTVMTSVYGVTYIGARDQIKRRLKERNAIADDVELFGAACYAAKITLTALGEMFQAAR 869

Query: 1042 RIMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMA 863
             IMSWLGDCAKIIASEN  VRWTTPLGLPVVQPYR LG++ +KTSLQ+LTL+ ET+ +M 
Sbjct: 870  SIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETETIMV 929

Query: 862  KRQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFV 683
            KRQ+TAFPPNFVHSLDGSHMMMTA+AC++AGLNFAGVHDSYWTHAC+VD+MN +LREKFV
Sbjct: 930  KRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRLLREKFV 989

Query: 682  ELYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            +LY+ PILENLLESFQQSFP L FPPLPERGDF+LR+VL+S +FFN
Sbjct: 990  QLYETPILENLLESFQQSFPALEFPPLPERGDFDLREVLESPYFFN 1035


>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
            sylvestris]
          Length = 1002

 Score = 1202 bits (3110), Expect = 0.0
 Identities = 587/825 (71%), Positives = 683/825 (82%)
 Frame = -3

Query: 3019 EQAAKEYQELLMDMCDRKLAPNLPYVKSLFLGWFEPFRDQVASEQEKTKDIKSRLPHAPF 2840
            E+AAKEYQELLMDMC++KLAPNLPY+KSLFLGWFEP RD +A+EQ+   + K+R   APF
Sbjct: 182  EEAAKEYQELLMDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGACAPF 241

Query: 2839 FNHLPADMMAVITMHKXXXXXXXXXXXXSAPIVKAACNVGEAIEQEVRIHRFLXXXXXXX 2660
            F+ LPA+MMAVITMHK            SA +V+AA ++GEAIE E RIHRFL       
Sbjct: 242  FDQLPAEMMAVITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHRFLEKTKKSN 301

Query: 2659 XXXXXXXXXXXXXTVSKDPEFLWKKVNILLKQQRPHQIGRILKCQDDWKPWGQIAQAKVG 2480
                          + K+ E + KKV IL+K+Q+  Q+ +I+K QDD KPWGQ    KVG
Sbjct: 302  ALSGDLEDTPGD--IMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVG 359

Query: 2479 SRLIELLMETAYVQPPASQSADNNLDIRPAFRHTRKAIIKEETKLRRVYGVIVCDPLVRQ 2300
             RLI++LMETAY+QPP  Q  D   DIRPAF HT K +  E  K  R YGVI CDPLVR+
Sbjct: 360  CRLIQILMETAYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRK 417

Query: 2299 GLDKTPRHXXXXXXXXXXXXVNWTGYAKGGHLFLSSYIMRTHGARQQREAIKRAPRQQMQ 2120
            GLDKT RH             +W GY KG +LFL SYIMRTHGA+QQREA+KR P++Q++
Sbjct: 418  GLDKTARHMVIPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLE 477

Query: 2119 AVFEALDTLGSTKWRINKRVLSIVERIWSSGGCIADLVDREDIPLPEKPDTEDETELRNW 1940
             VF+ALDTLG+TKWR+N++VL IV+RIW+SGG +ADLVDRED+PLPE+PD EDE ++R W
Sbjct: 478  PVFQALDTLGNTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKW 537

Query: 1939 KWKIRSIRKENNERHSRRCDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPHLNHLG 1760
            KWK++ ++KEN ERHS+RCD+ELKLAVARKMKDE+GFYYPHNLDFRGRAYPMHP+LNHLG
Sbjct: 538  KWKVKGVKKENCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLG 597

Query: 1759 SDLCRGILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRLAFTESHLEDIFDSAD 1580
            SDLCRGILEFAEGRPLGKSGLRWLKIHLAN+Y GGVDKLSY+GR+AF+E+H+EDIFDSA+
Sbjct: 598  SDLCRGILEFAEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAE 657

Query: 1579 RPLEGERWWLGAEGPLQCLAVCINLAEALRSSSPETTISHISVHQDGSCNGLQHYAALGR 1400
            RPLEG+RWWLGAE P QCLA CIN+AEALRS SPET IS++ +HQDGSCNGLQHYAALGR
Sbjct: 658  RPLEGKRWWLGAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGR 717

Query: 1399 DKLGAIAVNLVDGDKPADVYSGIAARVHEIMQRDAQEDPAKNPDALRAKLLAAQVDRKLV 1220
            D LGA AVNLV GDKPADVYSGIAARV +IM+RDA +DPA +P+ +RA+LL  QVDRKLV
Sbjct: 718  DTLGAAAVNLVAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLV 777

Query: 1219 KQTVMTSVYGVTYVGAREQIKKRLKERGVIADDNELYICSCYAAKTTLTALGEIFEAAHR 1040
            KQTVMTSVYGVTY+GAR+QIK+RLKERGVI DDNEL+  +CYAAKTTLTALGE+FEAA  
Sbjct: 778  KQTVMTSVYGVTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARS 837

Query: 1039 IMSWLGDCAKIIASENHTVRWTTPLGLPVVQPYRALGQYCVKTSLQILTLKVETDKVMAK 860
            IMSWLGDCAKIIA ENH VRWTTPLGLPVVQPYR LG++ +KTSLQILTL+ ETDKVM K
Sbjct: 838  IMSWLGDCAKIIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVK 897

Query: 859  RQKTAFPPNFVHSLDGSHMMMTAVACRRAGLNFAGVHDSYWTHACNVDQMNVILREKFVE 680
            RQ+TAFPPNFVHSLDGSHMMMTA+AC+ +GL+FAGVHDSYWTHA +VDQMN ILREKFVE
Sbjct: 898  RQRTAFPPNFVHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVE 957

Query: 679  LYQKPILENLLESFQQSFPTLNFPPLPERGDFNLRDVLDSTFFFN 545
            LY  PILENLLESFQQSFP L FPPLPERGDF+LR+VL+S +FFN
Sbjct: 958  LYDAPILENLLESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002