BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00019231
         (368 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa s...   209   3e-52
gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indi...   209   3e-52
ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, ...   208   7e-52
ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, I...   203   2e-50
ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, I...   200   1e-49
ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, I...   200   1e-49
ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, ...   200   2e-49
ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, ...   200   2e-49
gb|ABK26380.1| unknown [Picea sitchensis]                             199   2e-49
gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 ...   195   6e-48
ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF8...   195   6e-48
gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subun...   194   1e-47
ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group] g...   192   5e-47
gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indi...   192   5e-47
ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, I...   191   1e-46
ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, I...   190   2e-46
gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]        189   3e-46
ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III ...   189   3e-46
ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana] gi|2...   189   4e-46
ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutr...   188   7e-46

>dbj|BAD54456.1| putative RNA polymerase I, II and III 16.5 kDa subunit [Oryza
           sativa Japonica Group]
          Length = 396

 Score =  209 bits (532), Expect = 3e-52
 Identities = 97/122 (79%), Positives = 112/122 (91%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARSEQFDM+M LDV TE+YP+  GD+FTMVL+PTLN
Sbjct: 256 FEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTLN 315

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTG++ Q  RK+LADKF+YVMHGKLYKISE++S GQ  KVEIYASFGGLLMMLKG
Sbjct: 316 LDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLKG 375

Query: 361 DP 366
           DP
Sbjct: 376 DP 377


>gb|EAZ02226.1| hypothetical protein OsI_24321 [Oryza sativa Indica Group]
           gi|125598367|gb|EAZ38147.1| hypothetical protein
           OsJ_22498 [Oryza sativa Japonica Group]
          Length = 191

 Score =  209 bits (532), Expect = 3e-52
 Identities = 97/122 (79%), Positives = 112/122 (91%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARSEQFDM+M LDV TE+YP+  GD+FTMVL+PTLN
Sbjct: 51  FEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRAGDRFTMVLAPTLN 110

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTG++ Q  RK+LADKF+YVMHGKLYKISE++S GQ  KVEIYASFGGLLMMLKG
Sbjct: 111 LDGTPDTGFYTQAGRKTLADKFDYVMHGKLYKISEDSSSGQATKVEIYASFGGLLMMLKG 170

Query: 361 DP 366
           DP
Sbjct: 171 DP 172


>ref|XP_006656427.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like isoform X1 [Oryza brachyantha]
           gi|573948243|ref|XP_006656428.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X2
           [Oryza brachyantha] gi|573948245|ref|XP_006656429.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X3 [Oryza brachyantha]
           gi|573948247|ref|XP_006656430.1| PREDICTED: DNA-directed
           RNA polymerases II, IV and V subunit 8B-like isoform X4
           [Oryza brachyantha] gi|573948249|ref|XP_006656431.1|
           PREDICTED: DNA-directed RNA polymerases II, IV and V
           subunit 8B-like isoform X5 [Oryza brachyantha]
          Length = 146

 Score =  208 bits (529), Expect = 7e-52
 Identities = 97/122 (79%), Positives = 111/122 (90%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARSEQFDM+M LDV TE+YP+  GDKFTMVL+PTLN
Sbjct: 6   FEDIFTVTRLDPDGKKFDRVSRIEARSEQFDMYMQLDVATEVYPMRPGDKFTMVLAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPD G++ Q  RK+LADK++YVMHGKLYKISE+ SGGQ  KVEIYASFGGLLMMLKG
Sbjct: 66  LDGTPDIGFYTQAGRKTLADKYDYVMHGKLYKISEDGSGGQATKVEIYASFGGLLMMLKG 125

Query: 361 DP 366
           DP
Sbjct: 126 DP 127


>ref|XP_003580476.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 146

 Score =  203 bits (517), Expect = 2e-50
 Identities = 94/122 (77%), Positives = 109/122 (89%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + +IDPDGKKFD+V+RIEARSEQF M+M LDV T +YP+H GDKFTMVL+PTLN
Sbjct: 6   FEDIFVVNRIDPDGKKFDRVNRIEARSEQFHMYMQLDVATYVYPMHAGDKFTMVLAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGY+ Q  RK+LADK++YVMHGKLYKISE++SGGQ  KVE YASFGGLLM+LKG
Sbjct: 66  LDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVETYASFGGLLMLLKG 125

Query: 361 DP 366
           DP
Sbjct: 126 DP 127


>ref|XP_004234478.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like isoform 1 [Solanum lycopersicum]
           gi|460377396|ref|XP_004234479.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           isoform 2 [Solanum lycopersicum]
          Length = 145

 Score =  200 bits (509), Expect = 1e-49
 Identities = 96/122 (78%), Positives = 111/122 (90%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T+ DPDGKKFD+V+RIEARSEQFDMFM LDVNTEIYP+ V DKF MVL+ TLN
Sbjct: 6   FEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDVNTEIYPMRVKDKFMMVLASTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGYF+QGN+KSLADKFEYVMHGKLY+ISEE S G+++K +I+ SFGGLLM L+G
Sbjct: 66  LDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGS-GKHVKADIFVSFGGLLMQLRG 124

Query: 361 DP 366
           DP
Sbjct: 125 DP 126


>ref|XP_003563485.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Brachypodium distachyon]
          Length = 144

 Score =  200 bits (509), Expect = 1e-49
 Identities = 94/122 (77%), Positives = 111/122 (90%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF +++IDPDGKKFD+V+RIEARSEQ  M+M LDV T++YP+H GDKFTMVL+PTLN
Sbjct: 6   FEDIFVVSRIDPDGKKFDRVNRIEARSEQ--MYMQLDVATDVYPMHAGDKFTMVLAPTLN 63

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGY+ Q  RK+LADK++YVMHGKLYKISE++SGGQ  KVEIYASFGGLLM+LKG
Sbjct: 64  LDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDSSGGQAAKVEIYASFGGLLMLLKG 123

Query: 361 DP 366
           DP
Sbjct: 124 DP 125


>ref|XP_006665034.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Oryza brachyantha]
          Length = 147

 Score =  200 bits (508), Expect = 2e-49
 Identities = 94/123 (76%), Positives = 111/123 (90%), Gaps = 1/123 (0%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEAR+EQ +++M LDV T++YP+H GDKFTMVL PTLN
Sbjct: 6   FEDIFTVTRLDPDGKKFDRVSRIEARNEQLNVYMQLDVATDVYPMHPGDKFTMVLVPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEE-ASGGQNIKVEIYASFGGLLMMLK 357
           LDGTPDTG+F Q  RK+LADK+EYVMHGKLYKISE+  + GQN KVE+YASFGGLLMMLK
Sbjct: 66  LDGTPDTGFFTQAGRKTLADKYEYVMHGKLYKISEDKETSGQNAKVEMYASFGGLLMMLK 125

Query: 358 GDP 366
           GDP
Sbjct: 126 GDP 128


>ref|XP_006343291.1| PREDICTED: DNA-directed RNA polymerases II, IV and V subunit
           8B-like [Solanum tuberosum]
          Length = 145

 Score =  200 bits (508), Expect = 2e-49
 Identities = 95/122 (77%), Positives = 111/122 (90%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T+ DPDGKKFD+V+RIEARSEQFDMFM LD+NTEIYP+ V DKF MVL+ TLN
Sbjct: 6   FEDIFTVTQKDPDGKKFDRVNRIEARSEQFDMFMLLDINTEIYPMRVKDKFMMVLASTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGYF+QGN+KSLADKFEYVMHGKLY+ISEE S G+++K +I+ SFGGLLM L+G
Sbjct: 66  LDGTPDTGYFIQGNKKSLADKFEYVMHGKLYRISEEGS-GKHVKADIFVSFGGLLMQLRG 124

Query: 361 DP 366
           DP
Sbjct: 125 DP 126


>gb|ABK26380.1| unknown [Picea sitchensis]
          Length = 145

 Score =  199 bits (507), Expect = 2e-49
 Identities = 95/122 (77%), Positives = 110/122 (90%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T+IDPDGKKFDKVSRIEARSEQFDM+M LDVN ++YP+ VG+KF + L+PTLN
Sbjct: 6   FEDIFTVTRIDPDGKKFDKVSRIEARSEQFDMYMLLDVNIDVYPVSVGEKFAVALAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPD GYF+QG RKSLADK+EYVM+GKLY +SEE SG  N+KVEI ASFGGLLM+LKG
Sbjct: 66  LDGTPDNGYFIQGGRKSLADKYEYVMYGKLYNLSEEGSGA-NVKVEINASFGGLLMLLKG 124

Query: 361 DP 366
           DP
Sbjct: 125 DP 126


>gb|ACG27451.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide
           [Zea mays]
          Length = 146

 Score =  195 bits (495), Expect = 6e-48
 Identities = 87/122 (71%), Positives = 106/122 (86%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FED F +T++DPDGKKFD+VSR+EARSEQ DM+M LDV T++YP+H G+KF MV++PTLN
Sbjct: 6   FEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVIAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGY+ Q  RK+LAD +EYVM GKLYKISE+ S  QN KVE+YASFGGLLM+L+G
Sbjct: 66  LDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLLMLLRG 125

Query: 361 DP 366
           DP
Sbjct: 126 DP 127


>ref|NP_001147399.1| LOC100281008 [Zea mays] gi|194699730|gb|ACF83949.1| unknown [Zea
           mays] gi|195607894|gb|ACG25777.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195608506|gb|ACG26083.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195611040|gb|ACG27350.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195649823|gb|ACG44379.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|195653495|gb|ACG46215.1| DNA-directed RNA
           polymerases I, II, and III 17.1 kDa polypeptide [Zea
           mays] gi|238014148|gb|ACR38109.1| unknown [Zea mays]
           gi|413932441|gb|AFW66992.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 1 [Zea mays]
           gi|413932442|gb|AFW66993.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 2 [Zea mays]
           gi|413932443|gb|AFW66994.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 3 [Zea mays]
           gi|413932444|gb|AFW66995.1| DNA-directed RNA polymerase
           I, II, and III polypeptide isoform 4 [Zea mays]
          Length = 146

 Score =  195 bits (495), Expect = 6e-48
 Identities = 87/122 (71%), Positives = 106/122 (86%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FED F +T++DPDGKKFD+VSR+EARSEQ DM+M LDV T++YP+H G+KF MV++PTLN
Sbjct: 6   FEDTFVVTRLDPDGKKFDRVSRVEARSEQLDMYMQLDVATDVYPMHAGEKFNMVIAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGY+ Q  RK+LAD +EYVM GKLYKISE+ S  QN KVE+YASFGGLLM+L+G
Sbjct: 66  LDGTPDTGYYTQAGRKTLADNYEYVMQGKLYKISEDTSSSQNAKVEMYASFGGLLMLLRG 125

Query: 361 DP 366
           DP
Sbjct: 126 DP 127


>gb|EMT09070.1| DNA-directed RNA polymerases I, II, and III subunit rpabc3
           [Aegilops tauschii]
          Length = 220

 Score =  194 bits (493), Expect = 1e-47
 Identities = 91/124 (73%), Positives = 109/124 (87%), Gaps = 2/124 (1%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF +T+IDPDGKKFD+V+RIEARSEQ +M+M LD+ T++YP+H+GDKFTMVL+PTLN
Sbjct: 6   FEDIFHVTRIDPDGKKFDRVNRIEARSEQLEMYMQLDIATDVYPMHMGDKFTMVLAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQN--IKVEIYASFGGLLMML 354
           LDGTPDTGY+ Q  RK+LADK++YVMHGKLYKISE+ S       KVEIYASFGGLLM+L
Sbjct: 66  LDGTPDTGYYTQAGRKTLADKYDYVMHGKLYKISEDNSSKDKGPTKVEIYASFGGLLMLL 125

Query: 355 KGDP 366
           KGDP
Sbjct: 126 KGDP 129


>ref|NP_001051880.1| Os03g0845700 [Oryza sativa Japonica Group]
           gi|29244685|gb|AAO73277.1| putative RNA polymerase
           [Oryza sativa Japonica Group] gi|41469638|gb|AAS07361.1|
           putative RNA polymerase [Oryza sativa Japonica Group]
           gi|108712076|gb|ABF99871.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|108712077|gb|ABF99872.1| RNA polymerase Rpb8 family
           protein, expressed [Oryza sativa Japonica Group]
           gi|113550351|dbj|BAF13794.1| Os03g0845700 [Oryza sativa
           Japonica Group] gi|125588624|gb|EAZ29288.1| hypothetical
           protein OsJ_13351 [Oryza sativa Japonica Group]
           gi|215692970|dbj|BAG88390.1| unnamed protein product
           [Oryza sativa Japonica Group]
          Length = 148

 Score =  192 bits (487), Expect = 5e-47
 Identities = 92/124 (74%), Positives = 110/124 (88%), Gaps = 2/124 (1%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARS+QFDM+M LDV T++YP+H GD+FTMVL PTLN
Sbjct: 6   FEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEA-SGGQNI-KVEIYASFGGLLMML 354
           LDGTPD+ +F Q  RK+LADK+EYVMHGKLYKISE+  +  QN  KVE+YASFGGLL+ML
Sbjct: 66  LDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVML 125

Query: 355 KGDP 366
           KGDP
Sbjct: 126 KGDP 129


>gb|EEC76521.1| hypothetical protein OsI_14307 [Oryza sativa Indica Group]
          Length = 215

 Score =  192 bits (487), Expect = 5e-47
 Identities = 92/124 (74%), Positives = 110/124 (88%), Gaps = 2/124 (1%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIFT+T++DPDGKKFD+VSRIEARS+QFDM+M LDV T++YP+H GD+FTMVL PTLN
Sbjct: 73  FEDIFTVTRLDPDGKKFDRVSRIEARSDQFDMYMQLDVATDVYPMHPGDRFTMVLVPTLN 132

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEA-SGGQNI-KVEIYASFGGLLMML 354
           LDGTPD+ +F Q  RK+LADK+EYVMHGKLYKISE+  +  QN  KVE+YASFGGLL+ML
Sbjct: 133 LDGTPDSAFFTQAGRKTLADKYEYVMHGKLYKISEDKDTSDQNAKKVEMYASFGGLLVML 192

Query: 355 KGDP 366
           KGDP
Sbjct: 193 KGDP 196


>ref|XP_004152137.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3-like [Cucumis sativus]
           gi|449484745|ref|XP_004156968.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3-like
           [Cucumis sativus]
          Length = 144

 Score =  191 bits (484), Expect = 1e-46
 Identities = 91/122 (74%), Positives = 108/122 (88%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           F+DIF + +++PDGKKFDKV+RIEA+SE+FDMFMHLD+N+EIYPL  G+KF+M L+PTLN
Sbjct: 6   FDDIFKIERLNPDGKKFDKVTRIEAKSEKFDMFMHLDINSEIYPLKEGEKFSMALAPTLN 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGYFLQGNRKSLAD++EYVM GKL++ISE  S G   K EI ASFGGLLMMLKG
Sbjct: 66  LDGTPDTGYFLQGNRKSLADRYEYVMQGKLFRISE--SSGHGGKAEIDASFGGLLMMLKG 123

Query: 361 DP 366
           DP
Sbjct: 124 DP 125


>ref|XP_002274171.1| PREDICTED: DNA-directed RNA polymerases I, II, and III subunit
           rpabc3 isoform 1 [Vitis vinifera]
           gi|359478220|ref|XP_003632088.1| PREDICTED: DNA-directed
           RNA polymerases I, II, and III subunit rpabc3 isoform 2
           [Vitis vinifera] gi|296084252|emb|CBI24640.3| unnamed
           protein product [Vitis vinifera]
          Length = 145

 Score =  190 bits (482), Expect = 2e-46
 Identities = 93/122 (76%), Positives = 103/122 (84%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           F DIF + +IDPDGKKFDKVSRIEA+SEQ DM+M LDVNTEIYP+H G+KF M L+ TL+
Sbjct: 6   FGDIFKVIQIDPDGKKFDKVSRIEAQSEQLDMYMQLDVNTEIYPMHAGEKFAMSLASTLD 65

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGY+ Q  RKSLADKFEYVMHGKLYKISEE S G N+K  IY SFGGLLMML G
Sbjct: 66  LDGTPDTGYYTQAGRKSLADKFEYVMHGKLYKISEEGS-GPNVKGVIYVSFGGLLMMLSG 124

Query: 361 DP 366
           DP
Sbjct: 125 DP 126


>gb|EOY13785.1| RNA polymerase Rpb8 isoform 1 [Theobroma cacao]
          Length = 145

 Score =  189 bits (480), Expect = 3e-46
 Identities = 90/121 (74%), Positives = 107/121 (88%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + K+DPDGKKFDKV+RIEARS+  DMFMHLDVN+EIYP+HVGDKFTM L+ TLN
Sbjct: 7   FEDIFVVDKLDPDGKKFDKVTRIEARSQNCDMFMHLDVNSEIYPMHVGDKFTMALAHTLN 66

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGY+  G RKSLADK+EYVMHGKLYK+S++ S G+ +K EIY S+GGLLMML+G
Sbjct: 67  LDGTPDTGYYTPG-RKSLADKYEYVMHGKLYKVSDDGS-GKGLKAEIYVSYGGLLMMLRG 124

Query: 361 D 363
           +
Sbjct: 125 E 125


>ref|XP_002530308.1| DNA-directed RNA polymerases I, II, and III 17.1 kDa polypeptide,
           putative [Ricinus communis] gi|223530164|gb|EEF32075.1|
           DNA-directed RNA polymerases I, II, and III 17.1 kDa
           polypeptide, putative [Ricinus communis]
          Length = 146

 Score =  189 bits (480), Expect = 3e-46
 Identities = 90/122 (73%), Positives = 106/122 (86%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + K+DPDGKKFDKVSRIEA S+  DMFMHLDVNTEIYP+ VGDKFTM L+ TLN
Sbjct: 7   FEDIFVVDKLDPDGKKFDKVSRIEAHSQNCDMFMHLDVNTEIYPMAVGDKFTMALAHTLN 66

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGY+ QG RK+LADK+EY+M+GKLYKISEE S G+ +K E+  S+GGLLM+L+G
Sbjct: 67  LDGTPDTGYYTQGARKTLADKYEYIMNGKLYKISEEGS-GKAVKAEMLVSYGGLLMLLRG 125

Query: 361 DP 366
           DP
Sbjct: 126 DP 127


>ref|NP_191519.1| RNA polymerase Rpb8 [Arabidopsis thaliana]
           gi|297817262|ref|XP_002876514.1| hypothetical protein
           ARALYDRAFT_907465 [Arabidopsis lyrata subsp. lyrata]
           gi|565468254|ref|XP_006292007.1| hypothetical protein
           CARUB_v10018195mg [Capsella rubella]
           gi|75335784|sp|Q9M1A8.1|RPB8B_ARATH RecName:
           Full=DNA-directed RNA polymerases II, IV and V subunit
           8B; AltName: Full=RNA polymerase Rpb8
           gi|6996296|emb|CAB75457.1| putative protein [Arabidopsis
           thaliana] gi|21554131|gb|AAM63211.1| RNA polymerase II
           subunit, putative [Arabidopsis thaliana]
           gi|26453032|dbj|BAC43592.1| unknown protein [Arabidopsis
           thaliana] gi|30793811|gb|AAP40358.1| unknown protein
           [Arabidopsis thaliana] gi|297322352|gb|EFH52773.1|
           hypothetical protein ARALYDRAFT_907465 [Arabidopsis
           lyrata subsp. lyrata] gi|332646423|gb|AEE79944.1| RNA
           polymerase Rpb8 [Arabidopsis thaliana]
           gi|482560714|gb|EOA24905.1| hypothetical protein
           CARUB_v10018195mg [Capsella rubella]
          Length = 146

 Score =  189 bits (479), Expect = 4e-46
 Identities = 87/122 (71%), Positives = 104/122 (85%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + K+DPDGKKFDKV+R+EARS   +MFMHLDVNTE+YPL VGDKFT+ ++PTLN
Sbjct: 8   FEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPLAVGDKFTLAMAPTLN 67

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGYF  G +K+LADK+EY+MHGKLYKISE    G+  K E+Y SFGGLLM+L+G
Sbjct: 68  LDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKISER--DGKTPKAELYVSFGGLLMLLQG 125

Query: 361 DP 366
           DP
Sbjct: 126 DP 127


>ref|XP_006397103.1| hypothetical protein EUTSA_v10029046mg [Eutrema salsugineum]
           gi|557098120|gb|ESQ38556.1| hypothetical protein
           EUTSA_v10029046mg [Eutrema salsugineum]
          Length = 146

 Score =  188 bits (477), Expect = 7e-46
 Identities = 86/122 (70%), Positives = 104/122 (85%)
 Frame = +1

Query: 1   FEDIFTLTKIDPDGKKFDKVSRIEARSEQFDMFMHLDVNTEIYPLHVGDKFTMVLSPTLN 180
           FEDIF + K+DPDGKKFDKV+R+EARS   +MFMHLDVNTE+YP+ VGDKFTM ++PTLN
Sbjct: 8   FEDIFVVDKLDPDGKKFDKVTRVEARSHNLEMFMHLDVNTEVYPMAVGDKFTMAMAPTLN 67

Query: 181 LDGTPDTGYFLQGNRKSLADKFEYVMHGKLYKISEEASGGQNIKVEIYASFGGLLMMLKG 360
           LDGTPDTGYF  G +K+LADK+EY+MHGKLYKI+E    G+  K E+Y SFGGLLM+L+G
Sbjct: 68  LDGTPDTGYFTPGAKKTLADKYEYIMHGKLYKITER--DGKTPKAELYVSFGGLLMLLQG 125

Query: 361 DP 366
           DP
Sbjct: 126 DP 127