BLASTX nr result
ID: Zingiber25_contig00017062
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00017062
(1227 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [S... 473 e-131
ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein... 468 e-129
gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao... 465 e-128
ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea ma... 463 e-128
ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293... 462 e-127
ref|XP_002519028.1| RNA polymerase-associated protein RTF1, puta... 459 e-126
ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [A... 456 e-126
gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegi... 456 e-126
ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein... 456 e-126
gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryz... 454 e-125
gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japo... 454 e-125
ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group] g... 454 e-125
ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein... 454 e-125
ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein... 453 e-125
gb|EEC69429.1| hypothetical protein OsI_38596 [Oryza sativa Indi... 452 e-124
gb|EXB82802.1| RNA polymerase-associated protein RTF1-like prote... 451 e-124
gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus pe... 449 e-123
ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein... 448 e-123
ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citr... 448 e-123
gb|EMS56445.1| RNA polymerase-associated protein RTF1-like prote... 447 e-123
>ref|XP_002442249.1| hypothetical protein SORBIDRAFT_08g017010 [Sorghum bicolor]
gi|241942942|gb|EES16087.1| hypothetical protein
SORBIDRAFT_08g017010 [Sorghum bicolor]
Length = 656
Score = 473 bits (1218), Expect = e-131
Identities = 239/398 (60%), Positives = 290/398 (72%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFF++LI+GCFVRLGIGKT+SG P+Y+LC
Sbjct: 262 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCFVRLGIGKTKSGNPRYRLC 321
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA+DP++ YKLE Y+TYK+LN +WGS+A AARWQM VSDSPP +EF EW E
Sbjct: 322 IVRNVDASDPDRKYKLESYSTYKYLNVVWGSEADAARWQMTQVSDSPPNEEEFKEWLQEA 381
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQEVL+KK IQ+ NFVYSA TV+QML E KSA RP+N+AAEKD
Sbjct: 382 EKNGARIPTRQEVLEKKESIQKAYNFVYSAVTVQQMLKE-KSAVRRPINVAAEKDRLRSE 440
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
LK L++ PQ+ + D+KAA+L MN++NRA+NFKNAS +KP
Sbjct: 441 LEMALSRRNEAEAERIRAKLKNLQNRPQQVSK-DDKAAKLEAMNRKNRADNFKNASEMKP 499
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLK GEAGYDPFSRRWTRS NYY +KPGG ++ TAN + V N ++ +
Sbjct: 500 VNTSLKAGEAGYDPFSRRWTRSRNYYASKPGGDNAEETANGSSSDVVPINEDIK-SKAQT 558
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKL DT APVD GT N LH F+LPISL+ALQ+FGG +G+ G +
Sbjct: 559 GTAATTAAQVAAADAGKLTDTNAPVDLGTESNVLHTFELPISLSALQEFGGAKGLFDGYM 618
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
AR+QK+EAT GYK+PD+DGRRH LTL+VSDYKRRRGLL
Sbjct: 619 ARRQKIEATMGYKVPDNDGRRHALTLSVSDYKRRRGLL 656
>ref|XP_004962850.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Setaria
italica]
Length = 650
Score = 468 bits (1204), Expect = e-129
Identities = 239/398 (60%), Positives = 286/398 (71%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSR+D KF+DVK IT+RRSKLVKWFMEPFFEE ++GCFVRLGIGKT+SG P+Y+LC
Sbjct: 256 DESPSRIDPLKFDDVKSITLRRSKLVKWFMEPFFEETVSGCFVRLGIGKTKSGTPRYRLC 315
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA+DP++ YKLE YTT K+LN +W S+A+AARWQM VSDSPP +EF EW E
Sbjct: 316 IVRNVDASDPDRKYKLESYTTCKYLNVVWDSEANAARWQMTQVSDSPPNEEEFKEWLQEA 375
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQEVL+KK IQ+ N+VYSA VK ML E KSA R +N+AAEKD
Sbjct: 376 EKNGVRIPTRQEVLEKKDAIQKAYNYVYSADAVKNMLRE-KSAVRRTINVAAEKDRLRNE 434
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L L++MPQ K+ ++KAARL MN++NRAENFKNAS +KP
Sbjct: 435 LEIALSRRNEAEAERIRVKLNNLQNMPQPMKK-NDKAARLEAMNRKNRAENFKNASEMKP 493
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
+NTSLK GEAGYDPFSRRWTRS NYY AKPGG + AN GN+V+ N N+
Sbjct: 494 INTSLKAGEAGYDPFSRRWTRSRNYYTAKPGGDNVEEAANGSSGNAVAGNEDGK-NKAHT 552
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKL+DT APVD GT N LH F+LPISL+ALQ+FGG +G+ G +
Sbjct: 553 GTAATAAAQVAAADAGKLIDTNAPVDLGTESNVLHTFELPISLSALQEFGGAKGLFDGYM 612
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
ARKQK+EAT GYK+PD+DGRRH LTL+VSDYKRRRGLL
Sbjct: 613 ARKQKIEATMGYKVPDNDGRRHALTLSVSDYKRRRGLL 650
>gb|EOY28313.1| PAF1 complex component isoform 1 [Theobroma cacao]
gi|508781058|gb|EOY28314.1| PAF1 complex component
isoform 1 [Theobroma cacao]
Length = 660
Score = 465 bits (1197), Expect = e-128
Identities = 236/392 (60%), Positives = 287/392 (73%), Gaps = 1/392 (0%)
Frame = +1
Query: 25 DAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLCLVRNVDA 204
D P F+D+KEITIRRSKL KWFMEPFFEELI GC+VR+GIG+++SG P Y+LC+VRNVDA
Sbjct: 271 DGPTFDDIKEITIRRSKLAKWFMEPFFEELIVGCYVRVGIGRSKSG-PIYRLCMVRNVDA 329
Query: 205 TDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEVEKGNGRM 384
T+PE+ YKLE+ TTYK+LN +WG+++SAARWQMAM+SDSPP +EF + E+E+ GRM
Sbjct: 330 TEPERTYKLENKTTYKYLNVVWGNESSAARWQMAMISDSPPQEEEFRQLIRELERSGGRM 389
Query: 385 PTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXXXXXXXXX 564
P++Q+VL+KK +Q+ FVYSAATVKQML EKKS S RP+NIAAEKD
Sbjct: 390 PSKQDVLEKKEALQKAKTFVYSAATVKQMLQEKKSTSSRPLNIAAEKDRLRRDLEIAQSK 449
Query: 565 XXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKPVNTSLKV 744
L+QLE ++ ++ D KA RLAEMN++NRAENFKNAS LKPVNT LK
Sbjct: 450 HDEAEVERIKMRLQQLE-ASRQAQEKDAKAVRLAEMNRKNRAENFKNASELKPVNTGLKA 508
Query: 745 GEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEH-GNSVSANVTASMNEVERGEXXXX 921
GEAGYDPFSRRWTRS NYYVAKP G D+ + AN + G S N + E G
Sbjct: 509 GEAGYDPFSRRWTRSRNYYVAKPPGADAAAVANGDRIGVIASGNGNDARAAAEAGRAATV 568
Query: 922 XXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLLARKQKV 1101
GKLVDT APVD+GT N LHDF++PISL ALQ+FGGPQG G +ARKQ++
Sbjct: 569 AALQEAAGAGKLVDTSAPVDEGTESNMLHDFEIPISLNALQRFGGPQGAVAGFMARKQRI 628
Query: 1102 EATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
EAT G ++P++DGRRH LTLTVSDYKRRRGLL
Sbjct: 629 EATVGCQVPENDGRRHALTLTVSDYKRRRGLL 660
>ref|NP_001168711.1| uncharacterized protein LOC100382503 [Zea mays]
gi|223950353|gb|ACN29260.1| unknown [Zea mays]
gi|413916604|gb|AFW56536.1| plus-3 domain-containing
protein [Zea mays]
Length = 650
Score = 463 bits (1192), Expect = e-128
Identities = 236/398 (59%), Positives = 288/398 (72%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFF++LI+GCFVRLGIGKT++G P Y+LC
Sbjct: 256 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCFVRLGIGKTKNGTPSYRLC 315
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA+DP+++YKLE+Y+T K+LN +W S+A+AARWQM VSDSPP +EF +W
Sbjct: 316 IVRNVDASDPDRNYKLENYSTCKYLNVVWDSEANAARWQMTQVSDSPPNEEEFKDWLQAA 375
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQEVLDKK IQ NFVYSAATV+QM L++KSA RP+NIAAEKD
Sbjct: 376 EKNGARIPTRQEVLDKKEAIQNAYNFVYSAATVQQM-LQEKSAVRRPINIAAEKDRLRSE 434
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
LK L++ Q + D KAA+L MN++NRA+NFKNAS LKP
Sbjct: 435 LEMALSRRNEHEAERIRTKLKNLQNRAQPVSK-DNKAAKLEAMNRKNRADNFKNASELKP 493
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLK GEAGYDPFSRRWTRS NYY +KPGG + TAN N +N + ++ +
Sbjct: 494 VNTSLKAGEAGYDPFSRRWTRSRNYYASKPGGNNVEETANGSSSNVAPSN-EDTKSKAQT 552
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKL+DT APVD GT N LH F+LPISL+ALQ+FGG +G+ G +
Sbjct: 553 GTAATTAAQVAAADAGKLIDTNAPVDLGTESNMLHTFELPISLSALQEFGGAKGLFDGYM 612
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
AR+QK+EAT GYK+PD+DGRRH LTL+VSDYKRRRGLL
Sbjct: 613 ARRQKIEATMGYKVPDNDGRRHALTLSVSDYKRRRGLL 650
>ref|NP_001145747.1| hypothetical protein [Zea mays] gi|219884293|gb|ACL52521.1| unknown
[Zea mays] gi|414878213|tpg|DAA55344.1| TPA: hypothetical
protein ZEAMMB73_654453 [Zea mays]
Length = 647
Score = 462 bits (1188), Expect = e-127
Identities = 237/398 (59%), Positives = 288/398 (72%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFF++LI+GCFVRLGIG+T++G P+Y+LC
Sbjct: 253 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFDDLISGCFVRLGIGQTKNGTPRYRLC 312
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA+DP+++YKLE Y+T K+LN +W S+A+AARWQM VSDSPP +EF EW E
Sbjct: 313 IVRNVDASDPDRNYKLESYSTCKYLNVVWDSEANAARWQMTQVSDSPPNEEEFKEWLQEA 372
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQEVLDKK IQ NFVYSAATV+QML E KSA RP+NIAAEKD
Sbjct: 373 EKHGARIPTRQEVLDKKEAIQEAYNFVYSAATVQQMLRE-KSAVRRPINIAAEKDRLRSE 431
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
LK L+ PQ + D KAA+L MN++NRA+NFKNAS LKP
Sbjct: 432 LEMALSRRNEAEAERIRVKLKNLQSRPQPVSK-DNKAAKLEAMNRKNRADNFKNASELKP 490
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLK GEAGYDPFSRRWTRS NYY +KPGG ++ TAN + + V + ++ +
Sbjct: 491 VNTSLKAGEAGYDPFSRRWTRSRNYYASKPGGDNAEETAN-KSSSIVEPSNGDIKSKAQT 549
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKL DT APVD GT N +H F+LPISL+ALQ+FGG +G+ G +
Sbjct: 550 GTSATTAAQVAAADAGKLTDTNAPVDLGTESNVMHTFELPISLSALQEFGGAKGLFDGYM 609
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
AR+QK+EAT GYK+PD+DGRRH LTL+VSDYKRRRGLL
Sbjct: 610 ARRQKIEATMGYKVPDNDGRRHALTLSVSDYKRRRGLL 647
>ref|XP_002519028.1| RNA polymerase-associated protein RTF1, putative [Ricinus communis]
gi|223541691|gb|EEF43239.1| RNA polymerase-associated
protein RTF1, putative [Ricinus communis]
Length = 660
Score = 459 bits (1180), Expect = e-126
Identities = 236/392 (60%), Positives = 288/392 (73%), Gaps = 3/392 (0%)
Frame = +1
Query: 31 PKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLCLVRNVDATD 210
P F+D++EITIRRSKL KWFMEP+FEELI GCFVR+GIG+++SG P Y+LCLVRNVDA D
Sbjct: 271 PTFDDIREITIRRSKLAKWFMEPWFEELIVGCFVRVGIGRSKSG-PIYRLCLVRNVDAAD 329
Query: 211 PEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEVEKGNGRMPT 390
P++ YKLE+ TTYK+LN IWG+++SAARWQMAM+SDS P DE+ +W EVE+ GRMPT
Sbjct: 330 PDRPYKLENKTTYKYLNVIWGNESSAARWQMAMISDSAPTEDEYKQWVREVERSGGRMPT 389
Query: 391 RQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXXXXXXXXXXX 570
+Q++L+KK I++ N FVYSAATVKQML EKKSAS RP+N+AAEKD
Sbjct: 390 KQDILEKKEAIRKSNTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSKQD 449
Query: 571 XXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKPVNTSLKVGE 750
+++LE ++T+ D KA RLAEMN++NRAENF+NAS LKPVNTSLK GE
Sbjct: 450 DAEVERIRARIQELE-ASRQTQGKDAKAIRLAEMNRKNRAENFRNASELKPVNTSLKAGE 508
Query: 751 AGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVS-ANVTASMNEV--ERGEXXXX 921
AGYDPFSRRWTRS NYYV+KP G D+ + N E +V+ AN T S V E G
Sbjct: 509 AGYDPFSRRWTRSRNYYVSKPAGGDAAAATNNEASGTVAVANKTESAAGVSAEAGMAATA 568
Query: 922 XXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLLARKQKV 1101
GKLVDT APVDQGT N LH+F+LPISL ALQKFGG QG G +ARKQ++
Sbjct: 569 AALEAAADAGKLVDTAAPVDQGTESNTLHNFELPISLTALQKFGGAQGAQAGFMARKQRI 628
Query: 1102 EATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
EAT G ++ ++D +RH LTLTVSDYKRRRGLL
Sbjct: 629 EATIGCRVSENDEKRHVLTLTVSDYKRRRGLL 660
>ref|XP_006853567.1| hypothetical protein AMTR_s00032p00242160 [Amborella trichopoda]
gi|548857220|gb|ERN15034.1| hypothetical protein
AMTR_s00032p00242160 [Amborella trichopoda]
Length = 624
Score = 456 bits (1174), Expect = e-126
Identities = 236/401 (58%), Positives = 287/401 (71%), Gaps = 2/401 (0%)
Frame = +1
Query: 1 EDLSP-SRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYK 177
ED P S + P FED+K ITIRRS+L KWF+EPFFEE I GCFVR+GIG +RSG+ Y+
Sbjct: 243 EDEGPTSGSEHPTFEDIKGITIRRSRLAKWFLEPFFEEAIVGCFVRVGIGTSRSGQSIYR 302
Query: 178 LCLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKW 357
LC+VRNVDA+DP++ YK E+ TT+K+LNC+WGS+ASAARWQMA +SDS PL EF EW
Sbjct: 303 LCMVRNVDASDPDRQYKFENRTTHKYLNCVWGSEASAARWQMARISDSAPLEKEFLEWVR 362
Query: 358 EVEKGNGRMPTRQEVLDKKAEIQRI-NNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXX 534
EVE+G GRMPT+Q+V+DK IQR+ ++FVYSAATVKQML EKKSAS RP NIAAEKD
Sbjct: 363 EVERGGGRMPTKQDVIDKGEAIQRLSSSFVYSAATVKQMLQEKKSASTRPSNIAAEKDRL 422
Query: 535 XXXXXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASA 714
L++LE++ Q++K+ D KA LAEMN+RNRAENFKNAS
Sbjct: 423 RKEMELAESRLDHAEAERVRARLQELENLSQQSKKKDAKAVMLAEMNRRNRAENFKNASE 482
Query: 715 LKPVNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNE 894
LKPVNTSLK GEAGYDPFSRRWTRS NYYV+KP G E + +A A+
Sbjct: 483 LKPVNTSLKAGEAGYDPFSRRWTRSRNYYVSKPEGGGEVVKEEAETAATKAALEAAA--- 539
Query: 895 VERGEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHI 1074
GKLVDT APVD+GT + LHDF+LPISLA LQ+FGGPQG +
Sbjct: 540 ----------------DAGKLVDTKAPVDEGTESHSLHDFELPISLAGLQRFGGPQGAQL 583
Query: 1075 GLLARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
+ARKQ++EAT G ++P++DGRRH LTL+VSDYKRRRGL+
Sbjct: 584 AFMARKQRIEATIGVRVPENDGRRHSLTLSVSDYKRRRGLV 624
>gb|EMT02912.1| RNA polymerase-associated RTF1-like protein [Aegilops tauschii]
Length = 661
Score = 456 bits (1174), Expect = e-126
Identities = 236/398 (59%), Positives = 282/398 (70%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFVRLGIGKT+SG PKY+LC
Sbjct: 265 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKTKSGTPKYRLC 324
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA DP++ YKLE Y T K+LN +W ++A+AARWQM VSDSP L +EF EW E
Sbjct: 325 IVRNVDANDPDRQYKLESYETCKYLNVVWDNEANAARWQMTQVSDSPVLEEEFKEWLQEA 384
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQEVL+KK +I + N+VYSAATV+QML EKKSA RP+N+AAEKD
Sbjct: 385 EKNGVRIPTRQEVLEKKEDIIKAYNYVYSAATVQQMLREKKSAVRRPMNVAAEKDRLRDQ 444
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L L+ + Q +EKAA+L EMN++NRAENFKNAS +K
Sbjct: 445 LEMALVRRDDAEAERIRARLSHLQKIAQ-PMSTNEKAAKLEEMNRKNRAENFKNASEMKA 503
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLK GEAGYDPFSRRWTRS NYY AKP G + A + ++V A A V
Sbjct: 504 VNTSLKAGEAGYDPFSRRWTRSRNYYAAKPEGEAENAEAANGNSDNVIAVTEAVKGGVRV 563
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKLVDT AP+D GT N LH+F+LPISLA L+++GGP+G +
Sbjct: 564 GTAVTASALVAAAEAGKLVDTNAPLDLGTETNPLHNFELPISLAILEQYGGPKGQFEAYM 623
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
ARKQK+EAT GYKIPD+DGRRH LTL+VSDYKRRRGLL
Sbjct: 624 ARKQKIEATMGYKIPDNDGRRHALTLSVSDYKRRRGLL 661
>ref|XP_003529309.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Glycine max] gi|571466984|ref|XP_006583809.1| PREDICTED:
RNA polymerase-associated protein RTF1 homolog isoform X2
[Glycine max]
Length = 656
Score = 456 bits (1174), Expect = e-126
Identities = 235/401 (58%), Positives = 290/401 (72%), Gaps = 2/401 (0%)
Frame = +1
Query: 1 EDLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKL 180
+D + + + P F+DVKEITIRRSKL KWFMEPFFEELI GCFVR+GIG++++G P Y+L
Sbjct: 259 DDRALAGSEGPSFQDVKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKTG-PIYRL 317
Query: 181 CLVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWE 360
C+V+NVDA++P++ YKLE+ TTYK+LN +WG+++SAARWQMAMVSDS PL +EF +W E
Sbjct: 318 CMVKNVDASEPDRQYKLENKTTYKYLNVVWGNESSAARWQMAMVSDSAPLEEEFKQWVKE 377
Query: 361 VEKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXX 540
V++ GRMP++Q+VL+KK IQ+ FVYSAATVKQML EKKSAS RP+N+AAEKD
Sbjct: 378 VDRSGGRMPSKQDVLEKKQAIQKAITFVYSAATVKQMLQEKKSASTRPLNVAAEKDRLRR 437
Query: 541 XXXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALK 720
L +LE ++ KQ D KA +LAEMN++NR ENFKNAS +K
Sbjct: 438 ELEIAQSKYDEAEVERIKTRLLELE-ASRQAKQKDAKALKLAEMNRKNRFENFKNASEMK 496
Query: 721 PVNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSA--NVTASMNE 894
PVNT LK GEAGYDPFSRRWTRS NYY AKPG + + N+ +GN A N T +
Sbjct: 497 PVNTGLKAGEAGYDPFSRRWTRSRNYYAAKPGE-KAAAGNNSVNGNVAGAGSNGTGAPVT 555
Query: 895 VERGEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHI 1074
E G GKLVDT APVDQGT N LH+F+LPISLA LQKFGG QG
Sbjct: 556 AEAGMVATAAALEAAAGAGKLVDTSAPVDQGTESNMLHNFELPISLALLQKFGGAQGAQA 615
Query: 1075 GLLARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
G +ARKQK+EAT G+++ ++DGRRH LTLTVSDYKRRRGLL
Sbjct: 616 GFMARKQKIEATVGFRVSENDGRRHALTLTVSDYKRRRGLL 656
>gb|ABA98830.1| Plus-3 domain containing protein, expressed [Oryza sativa Japonica
Group] gi|77556035|gb|ABA98831.1| Plus-3 domain
containing protein, expressed [Oryza sativa Japonica
Group] gi|215697432|dbj|BAG91426.1| unnamed protein
product [Oryza sativa Japonica Group]
Length = 522
Score = 454 bits (1169), Expect = e-125
Identities = 236/398 (59%), Positives = 284/398 (71%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFVRLGIGK++SG P Y+LC
Sbjct: 128 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKSKSGTPDYRLC 187
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA DP++ YKLE YTT K+LN +W ++A+AARWQM VSDS P +EF +W
Sbjct: 188 IVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAARWQMTQVSDSFPSEEEFKKWLQVA 247
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQ+VL+KK IQ+ NFVYSA TV++ML EKKSA RP+N+AAEKD
Sbjct: 248 EKNGVRVPTRQDVLEKKEAIQQAYNFVYSAHTVQKMLKEKKSAIRRPINVAAEKDRLRNE 307
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L QL+ M + +EKAA+L MNK+NRAENFKNAS +KP
Sbjct: 308 LDMAIARRDEAEAERIRSKLNQLQKMSKPISN-NEKAAKLEAMNKKNRAENFKNASEMKP 366
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLKVGEAGYDPFSRRWTRS NYY AKP G +S N G++V+ + + N
Sbjct: 367 VNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG-ESAEVPNGNDGSAVAGD-EDTKNGPRG 424
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKLVDT APVD GT N LH+F+L ISLA L++FGGP+G+ G +
Sbjct: 425 GSAATAAALVAAADAGKLVDTNAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYM 484
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
ARKQK+EAT GYK+PD+DGRRH LTLTVSDYKRRRGLL
Sbjct: 485 ARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 522
>gb|EAZ20740.1| hypothetical protein OsJ_36364 [Oryza sativa Japonica Group]
Length = 653
Score = 454 bits (1169), Expect = e-125
Identities = 236/398 (59%), Positives = 284/398 (71%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFVRLGIGK++SG P Y+LC
Sbjct: 259 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKSKSGTPDYRLC 318
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA DP++ YKLE YTT K+LN +W ++A+AARWQM VSDS P +EF +W
Sbjct: 319 IVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAARWQMTQVSDSFPSEEEFKKWLQVA 378
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQ+VL+KK IQ+ NFVYSA TV++ML EKKSA RP+N+AAEKD
Sbjct: 379 EKNGVRVPTRQDVLEKKEAIQQAYNFVYSAHTVQKMLKEKKSAIRRPINVAAEKDRLRNE 438
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L QL+ M + +EKAA+L MNK+NRAENFKNAS +KP
Sbjct: 439 LDMAIARRDEAEAERIRSKLNQLQKMSKPISN-NEKAAKLEAMNKKNRAENFKNASEMKP 497
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLKVGEAGYDPFSRRWTRS NYY AKP G +S N G++V+ + + N
Sbjct: 498 VNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG-ESAEVPNGNDGSAVAGD-EDTKNGPRG 555
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKLVDT APVD GT N LH+F+L ISLA L++FGGP+G+ G +
Sbjct: 556 GSAATAAALVAAADAGKLVDTNAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYM 615
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
ARKQK+EAT GYK+PD+DGRRH LTLTVSDYKRRRGLL
Sbjct: 616 ARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 653
>ref|NP_001066936.1| Os12g0535900 [Oryza sativa Japonica Group]
gi|113649443|dbj|BAF29955.1| Os12g0535900, partial [Oryza
sativa Japonica Group]
Length = 599
Score = 454 bits (1169), Expect = e-125
Identities = 236/398 (59%), Positives = 284/398 (71%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFVRLGIGK++SG P Y+LC
Sbjct: 205 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKSKSGTPDYRLC 264
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA DP++ YKLE YTT K+LN +W ++A+AARWQM VSDS P +EF +W
Sbjct: 265 IVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAARWQMTQVSDSFPSEEEFKKWLQVA 324
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQ+VL+KK IQ+ NFVYSA TV++ML EKKSA RP+N+AAEKD
Sbjct: 325 EKNGVRVPTRQDVLEKKEAIQQAYNFVYSAHTVQKMLKEKKSAIRRPINVAAEKDRLRNE 384
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L QL+ M + +EKAA+L MNK+NRAENFKNAS +KP
Sbjct: 385 LDMAIARRDEAEAERIRSKLNQLQKMSKPISN-NEKAAKLEAMNKKNRAENFKNASEMKP 443
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLKVGEAGYDPFSRRWTRS NYY AKP G +S N G++V+ + + N
Sbjct: 444 VNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG-ESAEVPNGNDGSAVAGD-EDTKNGPRG 501
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKLVDT APVD GT N LH+F+L ISLA L++FGGP+G+ G +
Sbjct: 502 GSAATAAALVAAADAGKLVDTNAPVDLGTESNLLHNFELGISLAGLEEFGGPKGLFDGYM 561
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
ARKQK+EAT GYK+PD+DGRRH LTLTVSDYKRRRGLL
Sbjct: 562 ARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 599
>ref|XP_003575794.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog
[Brachypodium distachyon]
Length = 658
Score = 454 bits (1168), Expect = e-125
Identities = 236/400 (59%), Positives = 284/400 (71%), Gaps = 2/400 (0%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRL KF+DVK IT+RR+KLVKWFMEPFFE+L++GCFVR+GIGKT+SG PKY+LC
Sbjct: 261 DESPSRLVPLKFDDVKSITLRRTKLVKWFMEPFFEDLVSGCFVRIGIGKTKSG-PKYRLC 319
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA+DP++ YKL+ YTT K+LN +W ++A+AARWQM VSDSP L +EF EW E
Sbjct: 320 IVRNVDASDPDRQYKLDSYTTCKYLNVVWDNEANAARWQMTQVSDSPVLEEEFKEWLQEA 379
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQEVL+KK IQ+ FVYSAATVKQML EKKSA RP+N+AAEKD
Sbjct: 380 EKNGVRIPTRQEVLEKKEAIQKAYTFVYSAATVKQMLREKKSAVRRPMNVAAEKDRLRDQ 439
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L QL+ + Q +EKAA+L EMN++NRAENFK AS +K
Sbjct: 440 LEMALVRRDEVEAERIRARLNQLQKIAQPMSN-NEKAAKLEEMNRKNRAENFKTASEMKA 498
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTAS--MNEV 897
VNTSLK GEAGYDPFSRRWTRS NYY AKP G A +GN SA + V
Sbjct: 499 VNTSLKAGEAGYDPFSRRWTRSRNYYAAKPEGEAEGDNAEAANGNGDSAIASTKDVKGAV 558
Query: 898 ERGEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIG 1077
+ G GKLVDT AP+D GT N LH+F+LPISL+ L+++GGP+G+ G
Sbjct: 559 QVGSTVTASALVAAAEAGKLVDTNAPLDLGTETNSLHNFELPISLSVLEEYGGPKGLFEG 618
Query: 1078 LLARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
+ARKQK+EAT GYKIPD+DGRRH LTL+VSDYKRRRGLL
Sbjct: 619 YMARKQKIEATMGYKIPDNDGRRHALTLSVSDYKRRRGLL 658
>ref|XP_006664607.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog [Oryza
brachyantha]
Length = 645
Score = 453 bits (1165), Expect = e-125
Identities = 234/398 (58%), Positives = 281/398 (70%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFVRLGIGKT+SG P+Y+LC
Sbjct: 251 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKTKSGIPQYRLC 310
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA DP++HYKLE YTT K+LN +W ++ +AARWQM VSDS P DEF +W
Sbjct: 311 IVRNVDANDPDRHYKLEGYTTCKYLNVVWDNETTAARWQMTQVSDSFPTEDEFKQWLQGA 370
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQEVL+KK IQ+ FVYSA TVK+ML EKKSA RP+N+AAEKD
Sbjct: 371 EKNGVRIPTRQEVLEKKEAIQKAYTFVYSADTVKKMLREKKSAVRRPINVAAEKDRLRNE 430
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L QL++M Q + KAA+L MN++NRA+NFKNAS +KP
Sbjct: 431 LEMSLARRDEAEAERIRTKLNQLQNMSQPMSN-NVKAAKLEAMNRKNRADNFKNASEMKP 489
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLK GEA YDPFSRRWTRS NYY AKP G ++ N + ++V+ N N
Sbjct: 490 VNTSLKAGEAAYDPFSRRWTRSRNYYAAKPEG-ENAEVPNGDSASAVAGN-EDKKNGPRG 547
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKLVDT APVD GT N LH+F+L ISLA L++FGGP+G+ G +
Sbjct: 548 GTAATAAALVAAADAGKLVDTNAPVDLGTESNVLHNFELSISLAGLEEFGGPKGLFDGYM 607
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
ARKQK+EAT GYK+PD+DGRRH LTLTVSDYKRRRGLL
Sbjct: 608 ARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 645
>gb|EEC69429.1| hypothetical protein OsI_38596 [Oryza sativa Indica Group]
Length = 780
Score = 452 bits (1163), Expect = e-124
Identities = 236/398 (59%), Positives = 282/398 (70%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFVRLGIGK++SG P Y+LC
Sbjct: 386 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKSKSGTPDYRLC 445
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA DP++ YKLE YTT K+LN +W ++A+AARWQM VSDS P +EF +W
Sbjct: 446 IVRNVDANDPDRKYKLEGYTTCKYLNVVWDNEANAARWQMTQVSDSFPSEEEFKKWLQVA 505
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQEVL+KK IQ+ NFVYSA TV++ML EKKSA RP+N+AAEKD
Sbjct: 506 EKNGVRVPTRQEVLEKKEAIQQAYNFVYSARTVQKMLKEKKSAIRRPINVAAEKDRLRNE 565
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L QL+ M + +EKAA+L MNK+NRAENFKNAS +KP
Sbjct: 566 LDMAIARRDEAEAERIRSKLNQLQKMSKPISN-NEKAAKLEAMNKKNRAENFKNASEMKP 624
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLKVGEAGYDPFSRRWTRS NYY AKP G +S N G++V+ + + N
Sbjct: 625 VNTSLKVGEAGYDPFSRRWTRSRNYYAAKPEG-ESAEVPNGNDGSAVAGD-EDTKNGPRG 682
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKLVDT APVD GT N LH+F+L ISLA L++FGGP + G +
Sbjct: 683 GSAATAAALVAAADAGKLVDTNAPVDLGTESNLLHNFELGISLAGLEEFGGPMVLFDGYM 742
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
ARKQK+EAT GYK+PD+DGRRH LTLTVSDYKRRRGLL
Sbjct: 743 ARKQKIEATMGYKVPDNDGRRHALTLTVSDYKRRRGLL 780
>gb|EXB82802.1| RNA polymerase-associated protein RTF1-like protein [Morus notabilis]
Length = 658
Score = 451 bits (1160), Expect = e-124
Identities = 230/390 (58%), Positives = 280/390 (71%), Gaps = 3/390 (0%)
Frame = +1
Query: 37 FEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLCLVRNVDATDPE 216
F+D+KE+T+RRSKL KW MEPFFEELI GCFVR+GIG+++SG P Y+LC+VRNVDA++P+
Sbjct: 271 FDDIKEVTVRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSG-PIYRLCMVRNVDASEPD 329
Query: 217 KHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEVEKGNGRMPTRQ 396
+ YKL++ T+K+LN +WG++ SAARWQMAMVSDS P +EF +W EVE+ GRMPT+
Sbjct: 330 RQYKLDNKITHKYLNVVWGNENSAARWQMAMVSDSVPNEEEFKQWVREVERSGGRMPTKH 389
Query: 397 EVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXXXXXXXXXXXXX 576
++LDKK I++IN FVYSAATVKQML EKKSAS RP+NIA EKD
Sbjct: 390 DILDKKESIKKINTFVYSAATVKQMLQEKKSASARPLNIALEKDRLRRELEVAQSKNDEV 449
Query: 577 XXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKPVNTSLKVGEAG 756
L++LE ++ KQ D KA RLAEMN++NR ENFKNAS LKPVNT LK GEAG
Sbjct: 450 EVDRIKTRLQELE-ASRKAKQTDAKAIRLAEMNRKNRVENFKNASELKPVNTGLKAGEAG 508
Query: 757 YDPFSRRWTRSTNYYVAKPGGIDSTSTANT-EHGNSVSA--NVTASMNEVERGEXXXXXX 927
YDPFSRRWTRS NYYV KPG + S AN +G S A N + E G
Sbjct: 509 YDPFSRRWTRSRNYYVGKPGEVKEDSGANAGNNGASTDAENNGRHGIVAAEAGIAATEAA 568
Query: 928 XXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLLARKQKVEA 1107
GKLVDT APVDQGT N LH+F+LPISL+ LQKFGGPQG G +ARKQ++EA
Sbjct: 569 LEAAADAGKLVDTNAPVDQGTVSNMLHNFELPISLSVLQKFGGPQGAQAGFMARKQRIEA 628
Query: 1108 TYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
T G ++P++DGRRH LTL+V DYKRRRGLL
Sbjct: 629 TVGCRVPENDGRRHALTLSVGDYKRRRGLL 658
>gb|EMJ18830.1| hypothetical protein PRUPE_ppa002666mg [Prunus persica]
Length = 646
Score = 449 bits (1155), Expect = e-123
Identities = 231/401 (57%), Positives = 284/401 (70%), Gaps = 3/401 (0%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D R + F+D+KEITIRRSKL KW MEPFFEELI GCFVR+GIG+++SG P Y+LC
Sbjct: 248 DSDDERSEGLTFDDIKEITIRRSKLAKWLMEPFFEELIVGCFVRVGIGRSKSG-PIYRLC 306
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA+DP++ YKLE+ TT+K+LN +WG++ SAARWQMAM+SDS PL +EF +W EV
Sbjct: 307 MVRNVDASDPDRKYKLENKTTHKYLNVVWGNENSAARWQMAMISDSAPLEEEFKQWVREV 366
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
E+ GR+P++Q+VL+KK I++IN FVYSAATVKQM+ EKKSAS RP+NIA EKD
Sbjct: 367 ERSGGRLPSKQDVLEKKEAIKKINTFVYSAATVKQMIEEKKSASSRPLNIALEKDRLRRE 426
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L+QLE Q ++ D KA RLAEMN++NR ENFKNAS LKP
Sbjct: 427 LEVAQSKHDDAEVERIKTRLQQLEARRQ-SQGKDSKAVRLAEMNRKNRVENFKNASELKP 485
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNS---VSANVTASMNE 894
V T LK GEAGYDPFSRRWTRS NYYV+KPG + A + + + +N TA +
Sbjct: 486 VKTGLKAGEAGYDPFSRRWTRSRNYYVSKPGEQKGEAEAIVDADGALADIESNGTAVVGA 545
Query: 895 VERGEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHI 1074
V G GKL+DT APVD GT N +H+F+LPISLA LQKFGGPQG
Sbjct: 546 VRAGMAATAAALEAAAGAGKLIDTSAPVDFGTESNLMHNFELPISLATLQKFGGPQGAQE 605
Query: 1075 GLLARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
G LARKQ++EAT G ++P++DGRRH LTLTVSDYKRR GLL
Sbjct: 606 GFLARKQRIEATVGCRVPENDGRRHALTLTVSDYKRRMGLL 646
>ref|XP_006486980.1| PREDICTED: RNA polymerase-associated protein RTF1 homolog isoform X1
[Citrus sinensis] gi|568867309|ref|XP_006486981.1|
PREDICTED: RNA polymerase-associated protein RTF1 homolog
isoform X2 [Citrus sinensis]
Length = 643
Score = 448 bits (1152), Expect = e-123
Identities = 234/390 (60%), Positives = 284/390 (72%), Gaps = 1/390 (0%)
Frame = +1
Query: 31 PKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLCLVRNVDATD 210
P ++D+KEITIRRSKL KWFMEPFFEELI GCFVR+GIG++++G P Y+LC+VRNVDAT+
Sbjct: 258 PTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNG-PIYRLCMVRNVDATE 316
Query: 211 PEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEVEKGNGRMPT 390
P++ YKLE+ TT K+LN WG+++SAARWQMAMVSDSPPL +EF +W EVE+ +GRMP+
Sbjct: 317 PDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNSGRMPS 376
Query: 391 RQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXXXXXXXXXXX 570
+Q+VL+KK IQ+IN FVYSAATVKQML EKKSAS RP+N+AAEKD
Sbjct: 377 KQDVLEKKDSIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHD 436
Query: 571 XXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKPVNTSLKVGE 750
L++LE + +K D KA RLAEMN++NR ENFKNAS LK VNTSLK GE
Sbjct: 437 EVDMERIKKRLQELE-ASRDSKVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
Query: 751 AGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEV-ERGEXXXXXX 927
AGYDPFSRRWTRS NYY++KPG + T+ AN + N V E G
Sbjct: 496 AGYDPFSRRWTRSRNYYISKPGE-EVTAEANGDK-NGVPGGANGEEGATGEVGMAATEAA 553
Query: 928 XXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLLARKQKVEA 1107
GKLVDT AP+D GT N LHDF+L ISL AL+KFGGPQGV G +ARKQ++EA
Sbjct: 554 LEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEA 613
Query: 1108 TYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
T G ++P++DGRRH LTLTV DYKRRRGLL
Sbjct: 614 TVGCQVPENDGRRHALTLTVGDYKRRRGLL 643
>ref|XP_006422902.1| hypothetical protein CICLE_v10028000mg [Citrus clementina]
gi|557524836|gb|ESR36142.1| hypothetical protein
CICLE_v10028000mg [Citrus clementina]
Length = 643
Score = 448 bits (1152), Expect = e-123
Identities = 234/390 (60%), Positives = 283/390 (72%), Gaps = 1/390 (0%)
Frame = +1
Query: 31 PKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLCLVRNVDATD 210
P ++D+KEITIRRSKL KWFMEPFFEELI GCFVR+GIG++++G P Y+LC+VRNVDAT+
Sbjct: 258 PTYDDIKEITIRRSKLAKWFMEPFFEELIVGCFVRVGIGRSKNG-PIYRLCMVRNVDATE 316
Query: 211 PEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEVEKGNGRMPT 390
P++ YKLE+ TT K+LN WG+++SAARWQMAMVSDSPPL +EF +W EVE+ GRMP+
Sbjct: 317 PDRSYKLENRTTCKYLNVTWGNESSAARWQMAMVSDSPPLEEEFKQWLREVERNGGRMPS 376
Query: 391 RQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXXXXXXXXXXX 570
+Q+VL+KK IQ+IN FVYSAATVKQML EKKSAS RP+N+AAEKD
Sbjct: 377 KQDVLEKKESIQKINTFVYSAATVKQMLQEKKSASSRPLNVAAEKDRLRRELEVAQSRHD 436
Query: 571 XXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKPVNTSLKVGE 750
L++LE + +K D KA RLAEMN++NR ENFKNAS LK VNTSLK GE
Sbjct: 437 DVDMERIKKRLQELE-ASRDSKVKDAKAIRLAEMNRKNRVENFKNASELKRVNTSLKAGE 495
Query: 751 AGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEV-ERGEXXXXXX 927
AGYDPFSRRWTRS NYY++KPG + T+ AN + N V E G
Sbjct: 496 AGYDPFSRRWTRSRNYYISKPGE-EVTAEANGDK-NGVPGGANGEEGATGEVGMAATEAA 553
Query: 928 XXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLLARKQKVEA 1107
GKLVDT AP+D GT N LHDF+L ISL AL+KFGGPQGV G +ARKQ++EA
Sbjct: 554 LEAAAGAGKLVDTNAPLDLGTESNMLHDFELDISLNALKKFGGPQGVLAGFMARKQRIEA 613
Query: 1108 TYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
T G ++P++DGRRH LTLTV DYKRRRGLL
Sbjct: 614 TVGCQVPENDGRRHALTLTVGDYKRRRGLL 643
>gb|EMS56445.1| RNA polymerase-associated protein RTF1-like protein [Triticum urartu]
Length = 681
Score = 447 bits (1151), Expect = e-123
Identities = 235/398 (59%), Positives = 279/398 (70%)
Frame = +1
Query: 4 DLSPSRLDAPKFEDVKEITIRRSKLVKWFMEPFFEELIAGCFVRLGIGKTRSGKPKYKLC 183
D SPSRLD KF+DVK IT+RRSKLVKWFMEPFFE+L++GCFVRLGIGKT+SG PKY+LC
Sbjct: 286 DESPSRLDPLKFDDVKSITLRRSKLVKWFMEPFFEDLVSGCFVRLGIGKTKSGTPKYRLC 345
Query: 184 LVRNVDATDPEKHYKLEHYTTYKWLNCIWGSDASAARWQMAMVSDSPPLVDEFNEWKWEV 363
+VRNVDA DP++ YKLE Y T K+LN +W ++A+AARWQM VSDSP L +EF EW E
Sbjct: 346 IVRNVDANDPDRQYKLESYETCKYLNVVWDNEANAARWQMTQVSDSPVLEEEFKEWLQEA 405
Query: 364 EKGNGRMPTRQEVLDKKAEIQRINNFVYSAATVKQMLLEKKSASLRPVNIAAEKDXXXXX 543
EK R+PTRQEVL+KK I NFVYSAATV++ML E KSA RP+N+AAEKD
Sbjct: 406 EKNGVRIPTRQEVLEKKEAIIEAYNFVYSAATVQRMLKE-KSAVRRPMNVAAEKDRLRDQ 464
Query: 544 XXXXXXXXXXXXXXXXXXXLKQLEDMPQRTKQLDEKAARLAEMNKRNRAENFKNASALKP 723
L L+ + Q +EKAA+L EMN++NRAENFKNAS +K
Sbjct: 465 LEMALVRRDDAEAERIRARLNHLQKIAQ-PMSTNEKAAKLEEMNRKNRAENFKNASEMKA 523
Query: 724 VNTSLKVGEAGYDPFSRRWTRSTNYYVAKPGGIDSTSTANTEHGNSVSANVTASMNEVER 903
VNTSLK GEAGYDPFSRRWTRS NYY AKP G + A + ++V A A V
Sbjct: 524 VNTSLKAGEAGYDPFSRRWTRSRNYYAAKPEGEAENAEAVNGNSDNVIAVTEAVKGGVRV 583
Query: 904 GEXXXXXXXXXXXXXGKLVDTVAPVDQGTTFNFLHDFDLPISLAALQKFGGPQGVHIGLL 1083
G GKLVDT AP+D GT N LH+F+LPISLA L+++GGP+G +
Sbjct: 584 GTAVTASALVAAAEAGKLVDTNAPLDLGTETNPLHNFELPISLAVLEQYGGPKGQFEAYM 643
Query: 1084 ARKQKVEATYGYKIPDSDGRRHPLTLTVSDYKRRRGLL 1197
ARKQK+EAT GYKIPD+DGRRH LTL+VSDYKRRRGLL
Sbjct: 644 ARKQKIEATMGYKIPDNDGRRHALTLSVSDYKRRRGLL 681