BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Zingiber25_contig00016920
         (1245 letters)

Database: ./nr 
           37,332,560 sequences; 13,225,080,153 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japo...   641   0.0  
ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group] g...   641   0.0  
ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   635   e-179
ref|XP_004974856.1| PREDICTED: RNA pseudouridine synthase 3, mit...   633   e-179
gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]        627   e-177
dbj|BAJ88492.1| predicted protein [Hordeum vulgare subsp. vulgare]    590   e-166
ref|XP_006659607.1| PREDICTED: RNA pseudouridine synthase 3, mit...   585   e-164
dbj|BAD09700.1| putative ribosomal large subunit pseudouridine s...   583   e-164
ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitoc...   577   e-162
gb|AFW61501.1| hypothetical protein ZEAMMB73_778378 [Zea mays]        573   e-161
gb|EMT10490.1| RNA pseudourine synthase 3, mitochondrial [Aegilo...   570   e-160
ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [...   570   e-160
ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mit...   569   e-160
emb|CBI18448.3| unnamed protein product [Vitis vinifera]              569   e-160
gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma ...   567   e-159
ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citr...   566   e-159
ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Popu...   561   e-157
ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mit...   557   e-156
gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus...   557   e-156
gb|EMS66956.1| RNA pseudourine synthase 3, mitochondrial [Tritic...   553   e-155

>gb|EAZ43360.1| hypothetical protein OsJ_27960 [Oryza sativa Japonica Group]
          Length = 509

 Score =  641 bits (1654), Expect = 0.0
 Identities = 307/399 (76%), Positives = 349/399 (87%), Gaps = 1/399 (0%)
 Frame = +2

Query: 2    RRVTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKE-NNFTCSLEKIKHDHVM 178
            RRVTA+SWVKHY AD+ QE +Q HFNK LVY E S+ +   +   +    L+KIKH+ VM
Sbjct: 111  RRVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVM 170

Query: 179  ESGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVP 358
            E G+RIHLPVSV E +I KRY TIPTATL+PN DEIEY++RLVIHKDSAI VLNKPPKVP
Sbjct: 171  EPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVP 230

Query: 359  VNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNV 538
            + GNLPVHNSMD+LAAAALS G+++GPKLVHRLDRESSGLLL GRTKESFTRLHWLFT+V
Sbjct: 231  MKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSV 290

Query: 539  NLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSG 718
            NLAK++S++WN ACEA MQRYWALVIGTPKE+EG+ISAPL+KV+L+DGK ERVILAHPSG
Sbjct: 291  NLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSG 350

Query: 719  IDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQ 898
            IDG+QEA T YRVMGPTI+GCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV Q
Sbjct: 351  IDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQ 410

Query: 899  RWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSG 1078
            RWKQ P+ DFEP +GEPYKLRRPEGL +QKGSVLSKVPLLHLHCREMVIPNI+KFL S+G
Sbjct: 411  RWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNG 470

Query: 1079 EWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            EW +    W+  KP+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 471  EWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 509


>ref|NP_001062265.1| Os08g0520100 [Oryza sativa Japonica Group]
            gi|122234516|sp|Q0J4D4.1|PUS3_ORYSJ RecName: Full=RNA
            pseudouridine synthase 3, mitochondrial; AltName:
            Full=RNA pseudouridylate synthase 3; AltName:
            Full=RNA-uridine isomerase 3; Flags: Precursor
            gi|113624234|dbj|BAF24179.1| Os08g0520100 [Oryza sativa
            Japonica Group] gi|125562210|gb|EAZ07658.1| hypothetical
            protein OsI_29911 [Oryza sativa Indica Group]
          Length = 475

 Score =  641 bits (1654), Expect = 0.0
 Identities = 307/399 (76%), Positives = 349/399 (87%), Gaps = 1/399 (0%)
 Frame = +2

Query: 2    RRVTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKE-NNFTCSLEKIKHDHVM 178
            RRVTA+SWVKHY AD+ QE +Q HFNK LVY E S+ +   +   +    L+KIKH+ VM
Sbjct: 77   RRVTAVSWVKHYLADVPQEVVQAHFNKRLVYSECSDHEVSVETIKSQKHHLKKIKHNDVM 136

Query: 179  ESGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVP 358
            E G+RIHLPVSV E +I KRY TIPTATL+PN DEIEY++RLVIHKDSAI VLNKPPKVP
Sbjct: 137  EPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKVP 196

Query: 359  VNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNV 538
            + GNLPVHNSMD+LAAAALS G+++GPKLVHRLDRESSGLLL GRTKESFTRLHWLFT+V
Sbjct: 197  MKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTSV 256

Query: 539  NLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSG 718
            NLAK++S++WN ACEA MQRYWALVIGTPKE+EG+ISAPL+KV+L+DGK ERVILAHPSG
Sbjct: 257  NLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPSG 316

Query: 719  IDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQ 898
            IDG+QEA T YRVMGPTI+GCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV Q
Sbjct: 317  IDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQ 376

Query: 899  RWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSG 1078
            RWKQ P+ DFEP +GEPYKLRRPEGL +QKGSVLSKVPLLHLHCREMVIPNI+KFL S+G
Sbjct: 377  RWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSNG 436

Query: 1079 EWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            EW +    W+  KP+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 437  EWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 475


>ref|XP_003572398.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like
            [Brachypodium distachyon]
          Length = 479

 Score =  635 bits (1637), Expect = e-179
 Identities = 303/399 (75%), Positives = 347/399 (86%), Gaps = 1/399 (0%)
 Frame = +2

Query: 2    RRVTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKE-NNFTCSLEKIKHDHVM 178
            RRV+A+SWVKH FAD+ QE +Q HFNK  V+ E S+Q+  A    +    L+KIKH  VM
Sbjct: 81   RRVSAVSWVKHCFADVPQEVVQAHFNKRQVFAECSDQEVSAVSIRSQEHHLKKIKHSEVM 140

Query: 179  ESGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVP 358
            E G+RIHLPVSV E +I KRY TIP ATL+PN DEIEY+KRLVI+KDSAI VLNKPPKVP
Sbjct: 141  EPGMRIHLPVSVAEAEIKKRYETIPAATLHPNKDEIEYLKRLVIYKDSAILVLNKPPKVP 200

Query: 359  VNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNV 538
            + G+LPVHNSMD+LAAAALS G++ GPKLVHRLDR++SGLLLMGRTKESFTRLHWLFT+V
Sbjct: 201  MKGHLPVHNSMDVLAAAALSYGNEDGPKLVHRLDRDTSGLLLMGRTKESFTRLHWLFTSV 260

Query: 539  NLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSG 718
             LA+++S IWN+ACE+ +QRYWALVIGTPKE EGVISAPLTKV+L+DGK ERVILAHPSG
Sbjct: 261  KLARTASPIWNSACESYLQRYWALVIGTPKESEGVISAPLTKVLLDDGKAERVILAHPSG 320

Query: 719  IDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQ 898
            IDG+QEA TEYRVMGPTINGCSWIELCPLT RKHQLRVHCAEALGTPIVGDYKYGWFV Q
Sbjct: 321  IDGAQEAVTEYRVMGPTINGCSWIELCPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQ 380

Query: 899  RWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSG 1078
            RWKQ P+ DFEP +GE YKLRRPEGL VQKGSVLSKVPLLHLHCREMV+PNI+KFL ++G
Sbjct: 381  RWKQNPQPDFEPFTGEQYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPNIAKFLSNTG 440

Query: 1079 EWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            +W D+   W+  KP+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 441  DWHDDGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 479


>ref|XP_004974856.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like, partial
            [Setaria italica]
          Length = 464

 Score =  633 bits (1632), Expect = e-179
 Identities = 302/399 (75%), Positives = 347/399 (86%), Gaps = 1/399 (0%)
 Frame = +2

Query: 2    RRVTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKE-NNFTCSLEKIKHDHVM 178
            RRVTA+SWVKHYFAD+ QEA+Q HFN+ +V+ E S  +  A+        L+KIKH+ VM
Sbjct: 66   RRVTAVSWVKHYFADVPQEAVQAHFNRRMVFSECSEHEFSAESIRTQKHHLKKIKHNDVM 125

Query: 179  ESGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVP 358
            E G+RIHLPVSV E +I KRY TIPTATL+PN DEIEY++RLVIH+DS+I VLNKPPKVP
Sbjct: 126  EPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHRDSSILVLNKPPKVP 185

Query: 359  VNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNV 538
            + G+LPVHNSMD+LAAAALS G+ +GPKLVHRLDRESSGL+LMGRTKESFT+LHWLFT+V
Sbjct: 186  MKGHLPVHNSMDVLAAAALSYGNKEGPKLVHRLDRESSGLILMGRTKESFTQLHWLFTSV 245

Query: 539  NLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSG 718
            NLA+++S+ WN ACEA +Q+YWALVIGTPKE+EGVISAP++KV+L+DGK ERVILAHPSG
Sbjct: 246  NLARTTSQTWNKACEAYVQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPSG 305

Query: 719  IDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQ 898
            IDG+QEA TEYRVMGPTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV Q
Sbjct: 306  IDGAQEAITEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQ 365

Query: 899  RWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSG 1078
            RWKQ P+ DFEP +GEPYK+RRPEGL VQKGSVLSKVPLLHLHCREMV+PNI+KFL S G
Sbjct: 366  RWKQNPQPDFEPFTGEPYKIRRPEGLEVQKGSVLSKVPLLHLHCREMVLPNIAKFLSSIG 425

Query: 1079 EWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            EW D    W   KP+LLRF+A MP HMKISWN+MSSYLV
Sbjct: 426  EWHDGGAAWAKEKPNLLRFIAPMPPHMKISWNVMSSYLV 464


>gb|AFW61502.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
          Length = 478

 Score =  627 bits (1617), Expect = e-177
 Identities = 301/401 (75%), Positives = 345/401 (86%), Gaps = 3/401 (0%)
 Frame = +2

Query: 2    RRVTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKENNFTCS---LEKIKHDH 172
            RRVTA+SWVKHYFAD+ QEA+Q HFN+ +V+ E    D++   ++       L+KIKH+ 
Sbjct: 80   RRVTAVSWVKHYFADVPQEAVQAHFNRRMVFSEC--YDHKVSADSIRTQKHHLKKIKHND 137

Query: 173  VMESGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPK 352
             ME G+RIHLPVSV E+ I KRY TIPTATL+PN DEIEY++RLVI++DSAI VLNKPPK
Sbjct: 138  AMEPGMRIHLPVSVAESDIKKRYETIPTATLHPNKDEIEYLRRLVIYRDSAILVLNKPPK 197

Query: 353  VPVNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFT 532
            VP+ G+LPVHNSMD+LAAAALS GS++GPKLVHRLDRESSGL+LMGRTKESFTRLHWL T
Sbjct: 198  VPMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLT 257

Query: 533  NVNLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHP 712
            +VNLA++SS+ WN ACEA  Q+YWALVIGTPKE+EGVISAP++KV+L+DGK ERVILAHP
Sbjct: 258  SVNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHP 317

Query: 713  SGIDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFV 892
            SGIDG+QEA TEYRVMGPTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV
Sbjct: 318  SGIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFV 377

Query: 893  QQRWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGS 1072
             Q WKQ P+ DFEP +GEPYKLRRPEGL +QKGSVLSKVPLLHLHCREMVIPNI+KFL S
Sbjct: 378  HQTWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSS 437

Query: 1073 SGEWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            +G W +    W   KP+LLRFVA MP HMKISWN+MSSYLV
Sbjct: 438  TGGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSSYLV 478


>dbj|BAJ88492.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 357

 Score =  590 bits (1521), Expect = e-166
 Identities = 278/349 (79%), Positives = 313/349 (89%)
 Frame = +2

Query: 149  LEKIKHDHVMESGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAI 328
            L++IKH  VME G+RIHLPVSV E +I KRY TIPTATL+PN DEIEY+KRLVI+KDSAI
Sbjct: 9    LKRIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTATLHPNRDEIEYLKRLVIYKDSAI 68

Query: 329  FVLNKPPKVPVNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESF 508
             VLNKPPKVP+ GNLPVHNSMD+LAAAALS G+++GPKLVHRLDR+SSGLLLMGRT+E F
Sbjct: 69   LVLNKPPKVPMKGNLPVHNSMDVLAAAALSFGNEEGPKLVHRLDRDSSGLLLMGRTREGF 128

Query: 509  TRLHWLFTNVNLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKG 688
            TRLHWLFT++ LAK++S+ WN ACE+ +QRYWALVIGTP E EGVISAPLTKV+L+DGK 
Sbjct: 129  TRLHWLFTSIKLAKTASQTWNTACESYLQRYWALVIGTPTESEGVISAPLTKVLLDDGKA 188

Query: 689  ERVILAHPSGIDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVG 868
            ERVILAHPSGIDG+QEA TEYRVMGPTINGCSWIEL PLT RKHQLRVHCAEALGTPIVG
Sbjct: 189  ERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVG 248

Query: 869  DYKYGWFVQQRWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIP 1048
            DYKYGWFV QRWKQ P+ DFEP +GEPYKLRRPEGL VQKGSVLSKVPLLHLHCREMV+P
Sbjct: 249  DYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVP 308

Query: 1049 NISKFLGSSGEWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            NI+KFL ++GEW D    W+  KP+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 309  NIAKFLSNTGEWHDNGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 357


>ref|XP_006659607.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Oryza
            brachyantha]
          Length = 340

 Score =  585 bits (1509), Expect = e-164
 Identities = 278/340 (81%), Positives = 309/340 (90%)
 Frame = +2

Query: 176  MESGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKV 355
            ME G+RIHLPVSV E +I KRY TIPTATL+PN DEIEY+KRLVIHKDS+I VLNKPPKV
Sbjct: 1    MEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLKRLVIHKDSSILVLNKPPKV 60

Query: 356  PVNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTN 535
            P+ G+LPVHNSMD+LAAAALS G+D+GPKLVHRLDRESSGLLLMGRTKESFTRLHWLFT+
Sbjct: 61   PMKGHLPVHNSMDVLAAAALSYGNDEGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTS 120

Query: 536  VNLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPS 715
            VNLAK++SE WN ACEA MQRYWALVIGTPKE EG+ISAPL+KV+L+DGK ERVILAHPS
Sbjct: 121  VNLAKTNSEAWNAACEAYMQRYWALVIGTPKESEGIISAPLSKVLLDDGKAERVILAHPS 180

Query: 716  GIDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQ 895
            GIDG+QEA T YRVMGPTI+GCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV 
Sbjct: 181  GIDGAQEAVTAYRVMGPTISGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240

Query: 896  QRWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSS 1075
            QRWKQ P+ DFEP +GEPYKLRRPEGLA+QKGSVLSKVPLLHLHCREMVIPNI+KFL ++
Sbjct: 241  QRWKQNPQPDFEPFTGEPYKLRRPEGLAIQKGSVLSKVPLLHLHCREMVIPNIAKFLSNT 300

Query: 1076 GEWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            GEW +    W+  KP+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 301  GEWHENGTPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 340


>dbj|BAD09700.1| putative ribosomal large subunit pseudouridine synthase C protein
            [Oryza sativa Japonica Group] gi|42409169|dbj|BAD10435.1|
            putative ribosomal large subunit pseudouridine synthase C
            protein [Oryza sativa Japonica Group]
          Length = 340

 Score =  583 bits (1504), Expect = e-164
 Identities = 276/340 (81%), Positives = 309/340 (90%)
 Frame = +2

Query: 176  MESGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKV 355
            ME G+RIHLPVSV E +I KRY TIPTATL+PN DEIEY++RLVIHKDSAI VLNKPPKV
Sbjct: 1    MEPGMRIHLPVSVAEGEIKKRYETIPTATLHPNKDEIEYLRRLVIHKDSAILVLNKPPKV 60

Query: 356  PVNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTN 535
            P+ GNLPVHNSMD+LAAAALS G+++GPKLVHRLDRESSGLLL GRTKESFTRLHWLFT+
Sbjct: 61   PMKGNLPVHNSMDVLAAAALSYGNEEGPKLVHRLDRESSGLLLFGRTKESFTRLHWLFTS 120

Query: 536  VNLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPS 715
            VNLAK++S++WN ACEA MQRYWALVIGTPKE+EG+ISAPL+KV+L+DGK ERVILAHPS
Sbjct: 121  VNLAKTNSQVWNAACEAYMQRYWALVIGTPKEREGIISAPLSKVLLDDGKAERVILAHPS 180

Query: 716  GIDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQ 895
            GIDG+QEA T YRVMGPTI+GCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV 
Sbjct: 181  GIDGAQEAVTAYRVMGPTIHGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240

Query: 896  QRWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSS 1075
            QRWKQ P+ DFEP +GEPYKLRRPEGL +QKGSVLSKVPLLHLHCREMVIPNI+KFL S+
Sbjct: 241  QRWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSSN 300

Query: 1076 GEWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            GEW +    W+  KP+LLRF+A MP+HMKISWN+MSSYLV
Sbjct: 301  GEWHENGAPWSKEKPNLLRFIAPMPAHMKISWNIMSSYLV 340


>ref|XP_002267010.1| PREDICTED: RNA pseudourine synthase 3, mitochondrial-like [Vitis
            vinifera]
          Length = 479

 Score =  577 bits (1488), Expect = e-162
 Identities = 281/399 (70%), Positives = 334/399 (83%), Gaps = 3/399 (0%)
 Frame = +2

Query: 8    VTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKENNFTCS-LEKIKHDHVMES 184
            VTAISW+K+YF +I    +Q HFNKGLV++E SN D+ + E       L KIK + VME+
Sbjct: 81   VTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKPNEVMEA 140

Query: 185  GVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPVN 364
            G RI++PVSV E +I+KR+ TIP+ TL+PNADEIEY++RLV +KD AI VLNKPPKVP+ 
Sbjct: 141  GTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLVTYKDPAILVLNKPPKVPLK 200

Query: 365  GNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVNL 544
            GNLPVHNSMD LAAAAL+   ++GPKLVHRLDRESSGLLLMGRTKES   LHWLF+++N 
Sbjct: 201  GNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSDINK 260

Query: 545  AKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSGID 724
            AKS S+ W++ACEAT QRYWALVIG+PK+KEGVI APL+KV+L+DGK ERVILA+ SG++
Sbjct: 261  AKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSGLE 320

Query: 725  GSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQRW 904
             SQEA TEYRV+GP INGCSWIELCP TSRKHQLRVHCAEALGTPIVGDYKYGWFV +RW
Sbjct: 321  ASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRW 380

Query: 905  KQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSGEW 1084
            KQMPR D EP++G+PYK+RRPEGL VQKGSVLSKVPLLHLHCRE+++PNI+KFL      
Sbjct: 381  KQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILDPK 440

Query: 1085 LDETNEW--TASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
                N++   + KPD+LRFVASMP+HMKISWNLMSSYLV
Sbjct: 441  PKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 479


>gb|AFW61501.1| hypothetical protein ZEAMMB73_778378 [Zea mays]
          Length = 340

 Score =  573 bits (1476), Expect = e-161
 Identities = 272/340 (80%), Positives = 304/340 (89%)
 Frame = +2

Query: 176  MESGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKV 355
            ME G+RIHLPVSV E+ I KRY TIPTATL+PN DEIEY++RLVI++DSAI VLNKPPKV
Sbjct: 1    MEPGMRIHLPVSVAESDIKKRYETIPTATLHPNKDEIEYLRRLVIYRDSAILVLNKPPKV 60

Query: 356  PVNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTN 535
            P+ G+LPVHNSMD+LAAAALS GS++GPKLVHRLDRESSGL+LMGRTKESFTRLHWL T+
Sbjct: 61   PMKGHLPVHNSMDVLAAAALSYGSEEGPKLVHRLDRESSGLILMGRTKESFTRLHWLLTS 120

Query: 536  VNLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPS 715
            VNLA++SS+ WN ACEA  Q+YWALVIGTPKE+EGVISAP++KV+L+DGK ERVILAHPS
Sbjct: 121  VNLARTSSQTWNKACEAYAQKYWALVIGTPKEREGVISAPISKVLLDDGKAERVILAHPS 180

Query: 716  GIDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQ 895
            GIDG+QEA TEYRVMGPTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV 
Sbjct: 181  GIDGAQEAITEYRVMGPTINGCSWIELQPLTGRKHQLRVHCAEALGTPIVGDYKYGWFVH 240

Query: 896  QRWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSS 1075
            Q WKQ P+ DFEP +GEPYKLRRPEGL +QKGSVLSKVPLLHLHCREMVIPNI+KFL S+
Sbjct: 241  QTWKQNPQPDFEPFTGEPYKLRRPEGLEIQKGSVLSKVPLLHLHCREMVIPNIAKFLSST 300

Query: 1076 GEWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            G W +    W   KP+LLRFVA MP HMKISWN+MSSYLV
Sbjct: 301  GGWHENGTPWAKEKPNLLRFVAPMPPHMKISWNIMSSYLV 340


>gb|EMT10490.1| RNA pseudourine synthase 3, mitochondrial [Aegilops tauschii]
          Length = 368

 Score =  570 bits (1468), Expect = e-160
 Identities = 278/372 (74%), Positives = 317/372 (85%), Gaps = 3/372 (0%)
 Frame = +2

Query: 89   VYIESSNQDNQAKENNFTCS---LEKIKHDHVMESGVRIHLPVSVGETKITKRYSTIPTA 259
            VY E S+Q+  A+  +  C    L+KIKH  VME G+RIHLPVSV E +I KRY TIPTA
Sbjct: 10   VYTECSDQEVSAE--SIWCRKHHLKKIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTA 67

Query: 260  TLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPVNGNLPVHNSMDILAAAALSNGSDQGP 439
            TL+PN DEIEY+KRLVI+KDSAI VLNKPPKVP+ GNLPVHNSMD+LAAAALS G+++GP
Sbjct: 68   TLHPNRDEIEYLKRLVIYKDSAILVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGP 127

Query: 440  KLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVNLAKSSSEIWNNACEATMQRYWALVIG 619
            KLVHRLDR++SGLLLMGRT+ESFTRLHWLFT++ LA+++S           QRYWALVIG
Sbjct: 128  KLVHRLDRDTSGLLLMGRTRESFTRLHWLFTSIKLARTAS-----------QRYWALVIG 176

Query: 620  TPKEKEGVISAPLTKVVLNDGKGERVILAHPSGIDGSQEATTEYRVMGPTINGCSWIELC 799
            TP E EG+ISAPLTKV+L+DGK ERVILAHPSGIDG+QEA TEYRVMGPTINGCSWIEL 
Sbjct: 177  TPTESEGIISAPLTKVLLDDGKAERVILAHPSGIDGAQEAVTEYRVMGPTINGCSWIELR 236

Query: 800  PLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQRWKQMPRQDFEPSSGEPYKLRRPEGLA 979
            PLT RKHQLRVHCAEALGTPIVGDYKYGWFV QRWKQ P+ DFEP +GEPYKLRRPEGL 
Sbjct: 237  PLTGRKHQLRVHCAEALGTPIVGDYKYGWFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLE 296

Query: 980  VQKGSVLSKVPLLHLHCREMVIPNISKFLGSSGEWLDETNEWTASKPDLLRFVASMPSHM 1159
            VQKGSVLSKVPLLHLHCREMV+PNI+KFL ++GEW D    W+  KP+LLRF+A +P+HM
Sbjct: 297  VQKGSVLSKVPLLHLHCREMVVPNIAKFLSNTGEWHDNGTPWSKEKPNLLRFIAPLPAHM 356

Query: 1160 KISWNLMSSYLV 1195
            KISWN+MSSYLV
Sbjct: 357  KISWNIMSSYLV 368


>ref|XP_002526838.1| ribosomal pseudouridine synthase, putative [Ricinus communis]
            gi|223533842|gb|EEF35573.1| ribosomal pseudouridine
            synthase, putative [Ricinus communis]
          Length = 468

 Score =  570 bits (1468), Expect = e-160
 Identities = 282/396 (71%), Positives = 323/396 (81%)
 Frame = +2

Query: 8    VTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKENNFTCSLEKIKHDHVMESG 187
            VTAISWVK+YF +I   AIQ HFNKGL +IE  N      E     SL KIKH+ +ME+G
Sbjct: 74   VTAISWVKYYFDEILDSAIQSHFNKGLAHIECPNGSGSI-EYGGQMSLRKIKHNDIMEAG 132

Query: 188  VRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPVNG 367
             R+H+ VSV ET+I+KR+ TIP+ TL PNADEI+Y++RLV +KDSAI VLNKPP++PV G
Sbjct: 133  ARVHVAVSVAETRISKRFDTIPSGTLYPNADEIQYLQRLVKYKDSAIIVLNKPPRLPVKG 192

Query: 368  NLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVNLA 547
            NLP+HNSMD LAAAALS   D+GPKLV RLDRESSGLLLMGRTKES   L WLF++VN +
Sbjct: 193  NLPLHNSMDALAAAALSYDYDEGPKLVQRLDRESSGLLLMGRTKESIDHLQWLFSDVNKS 252

Query: 548  KSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSGIDG 727
             S  + WN+AC+AT QRYWALVIG+PKEKEG+I APL+KV+LNDGK ERV+LA  SG++ 
Sbjct: 253  NSRCKAWNDACKATYQRYWALVIGSPKEKEGLIRAPLSKVLLNDGKTERVVLAQHSGLEA 312

Query: 728  SQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQRWK 907
            SQEA TEYRV+GP INGCSWIEL PLTSRKHQLRVHCAEALGTPIVGDYKYGW V QRWK
Sbjct: 313  SQEALTEYRVLGPRINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWCVHQRWK 372

Query: 908  QMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSGEWL 1087
            QMPR D EP SG+PYKLRRP GL VQKGSVLSKVPLLHLHCRE V+PNI+KFL    E  
Sbjct: 373  QMPRVDIEPFSGKPYKLRRPAGLDVQKGSVLSKVPLLHLHCREFVLPNIAKFLAVLNEKS 432

Query: 1088 DETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            +  +    +KPDLLRFVASMP+HMKISWNLMSSYLV
Sbjct: 433  ENIHPALDAKPDLLRFVASMPTHMKISWNLMSSYLV 468


>ref|XP_006468112.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like [Citrus
            sinensis]
          Length = 471

 Score =  569 bits (1466), Expect = e-160
 Identities = 279/399 (69%), Positives = 329/399 (82%), Gaps = 3/399 (0%)
 Frame = +2

Query: 8    VTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKENNFTCSLEKIKHDHVMESG 187
            VTA+SWVK+YF +++   IQ HFNKGLV +E +N  +   E      + KIK + VME G
Sbjct: 73   VTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPG 132

Query: 188  VRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPVNG 367
             RI LPVS+ E +I+KRY TIP+ TLNPNADEI+Y++RLV ++DSAI VLNKPPKVP+ G
Sbjct: 133  ARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKG 192

Query: 368  NLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVNLA 547
            NLPVHNSMD LAAAALS  +++GPKLVHRLDRESSGLLLMGRTKES + L WLF++VN +
Sbjct: 193  NLPVHNSMDALAAAALSYDNNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 252

Query: 548  KSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSGIDG 727
            KS S+ WN+ACEA  QRYWALVIG+P+EK+G+I APL+KV+L+DGK ER+ILA  SG++ 
Sbjct: 253  KSLSKAWNDACEAMYQRYWALVIGSPREKQGIIRAPLSKVLLDDGKTERIILAQNSGLEA 312

Query: 728  SQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQRWK 907
            SQEA TEYRV+GP INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV +RWK
Sbjct: 313  SQEAMTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 372

Query: 908  QMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSGEWL 1087
            QMPR D EP+SG+PYKLRRP+GL VQKGSVLSKVPLLHLHCRE+V+PNI+KF+    +  
Sbjct: 373  QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFINVLNQKS 432

Query: 1088 DETNEWTASK---PDLLRFVASMPSHMKISWNLMSSYLV 1195
            D      +SK   PDLLRFVASMPSHMKISWNLMSSYLV
Sbjct: 433  DNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 471


>emb|CBI18448.3| unnamed protein product [Vitis vinifera]
          Length = 481

 Score =  569 bits (1466), Expect = e-160
 Identities = 280/401 (69%), Positives = 333/401 (83%), Gaps = 5/401 (1%)
 Frame = +2

Query: 8    VTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKENNFTCS-LEKIKHDHVMES 184
            VTAISW+K+YF +I    +Q HFNKGLV++E SN D+ + E       L KIK + VME+
Sbjct: 81   VTAISWIKYYFDEIPGSVVQSHFNKGLVHMERSNLDDSSLEKEGQIKPLRKIKPNEVMEA 140

Query: 185  GVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHK--DSAIFVLNKPPKVP 358
            G RI++PVSV E +I+KR+ TIP+ TL+PNADEIEY++RL + K  D AI VLNKPPKVP
Sbjct: 141  GTRIYVPVSVAEARISKRFDTIPSGTLHPNADEIEYLQRLWLLKFQDPAILVLNKPPKVP 200

Query: 359  VNGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNV 538
            + GNLPVHNSMD LAAAAL+   ++GPKLVHRLDRESSGLLLMGRTKES   LHWLF+++
Sbjct: 201  LKGNLPVHNSMDALAAAALTFDYEEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFSDI 260

Query: 539  NLAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSG 718
            N AKS S+ W++ACEAT QRYWALVIG+PK+KEGVI APL+KV+L+DGK ERVILA+ SG
Sbjct: 261  NKAKSLSKAWDDACEATCQRYWALVIGSPKQKEGVIHAPLSKVLLDDGKTERVILANQSG 320

Query: 719  IDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQ 898
            ++ SQEA TEYRV+GP INGCSWIELCP TSRKHQLRVHCAEALGTPIVGDYKYGWFV +
Sbjct: 321  LEASQEAITEYRVLGPMINGCSWIELCPRTSRKHQLRVHCAEALGTPIVGDYKYGWFVHR 380

Query: 899  RWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSG 1078
            RWKQMPR D EP++G+PYK+RRPEGL VQKGSVLSKVPLLHLHCRE+++PNI+KFL    
Sbjct: 381  RWKQMPRVDLEPTTGKPYKMRRPEGLDVQKGSVLSKVPLLHLHCRELILPNIAKFLPILD 440

Query: 1079 EWLDETNEW--TASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
                  N++   + KPD+LRFVASMP+HMKISWNLMSSYLV
Sbjct: 441  PKPKNQNQYPKLSLKPDILRFVASMPNHMKISWNLMSSYLV 481


>gb|EOY26277.1| Pseudouridine synthase family protein [Theobroma cacao]
          Length = 471

 Score =  567 bits (1461), Expect = e-159
 Identities = 278/398 (69%), Positives = 324/398 (81%), Gaps = 1/398 (0%)
 Frame = +2

Query: 5    RVTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQ-DNQAKENNFTCSLEKIKHDHVME 181
            RVTAISW+K+YF +I   AIQ HFNKGLV +ESSN  D   + +     L KIKH+ VME
Sbjct: 74   RVTAISWLKYYFDEIPDSAIQSHFNKGLVQMESSNAGDTCIERDGLMKPLRKIKHNEVME 133

Query: 182  SGVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPV 361
             G R+ +PVS+ ET+I+KR+  IP+ TL PN DEI+Y++RLV +KD AI VLNKPPK+PV
Sbjct: 134  VGTRVWVPVSIAETRISKRFDCIPSGTLYPNKDEIDYLQRLVKYKDYAILVLNKPPKLPV 193

Query: 362  NGNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVN 541
             G+LPVHNSMD LAAAALS   D+GPKLVHRLDRESSGLLLMGRTKES   LHWLF ++N
Sbjct: 194  KGSLPVHNSMDALAAAALSYDHDEGPKLVHRLDRESSGLLLMGRTKESVAHLHWLFNDLN 253

Query: 542  LAKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSGI 721
              KSS + WN+AC+   QR+WALVIGTPKEKEG+I APL+K++L+DGK ERVILA   G+
Sbjct: 254  TVKSSCKAWNDACDVKYQRFWALVIGTPKEKEGLICAPLSKILLDDGKTERVILAQNVGL 313

Query: 722  DGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQR 901
            + SQEA TEYRV+GP INGCSWIEL PLTSRKHQLRVHCAEALGTPIVGDYKYGWFV +R
Sbjct: 314  EASQEAITEYRVLGPMINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRR 373

Query: 902  WKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSGE 1081
            WKQMPR D EP++G+PYKLRRPEGL VQKGSVLSKVPLLHLHCRE+V+PNI+KFL    +
Sbjct: 374  WKQMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLPVLNK 433

Query: 1082 WLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
              +      + KPDLLRFVA+MP HMKISWNLMSSYLV
Sbjct: 434  NTETLPPALSMKPDLLRFVATMPKHMKISWNLMSSYLV 471


>ref|XP_006436406.1| hypothetical protein CICLE_v10031422mg [Citrus clementina]
            gi|557538602|gb|ESR49646.1| hypothetical protein
            CICLE_v10031422mg [Citrus clementina]
          Length = 471

 Score =  566 bits (1458), Expect = e-159
 Identities = 279/399 (69%), Positives = 327/399 (81%), Gaps = 3/399 (0%)
 Frame = +2

Query: 8    VTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKENNFTCSLEKIKHDHVMESG 187
            VTA+SWVK+YF +++   IQ HFNKGLV +E +N  +   E      + KIK + VME G
Sbjct: 73   VTAVSWVKYYFDEVQDSVIQSHFNKGLVQMECANMGDSFVEQGQMKPIRKIKTNEVMEPG 132

Query: 188  VRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPVNG 367
             RI LPVS+ E +I+KRY TIP+ TLNPNADEI+Y++RLV ++DSAI VLNKPPKVP+ G
Sbjct: 133  ARIFLPVSMVEGRISKRYDTIPSGTLNPNADEIDYLRRLVKYRDSAILVLNKPPKVPLKG 192

Query: 368  NLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVNLA 547
            +LPVHNSMD LAAAALS   ++GPKLVHRLDRESSGLLLMGRTKES + L WLF++VN +
Sbjct: 193  HLPVHNSMDALAAAALSYDYNEGPKLVHRLDRESSGLLLMGRTKESVSLLTWLFSDVNKS 252

Query: 548  KSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSGIDG 727
            KS S+ WN+ACEA  QRYWALVIG+PKEK+G+I APL+KV+L+DGK ER+ILA  SG++ 
Sbjct: 253  KSLSKAWNDACEAMYQRYWALVIGSPKEKQGIIHAPLSKVLLDDGKTERIILAQNSGLEA 312

Query: 728  SQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQRWK 907
            SQEA TEYRV+GP INGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV +RWK
Sbjct: 313  SQEAVTEYRVLGPMINGCSWIELRPLTCRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 372

Query: 908  QMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSGEWL 1087
            QMPR D EP+SG+PYKLRRP+GL VQKGSVLSKVPLLHLHCRE+V+PNI+KF     +  
Sbjct: 373  QMPRVDIEPTSGKPYKLRRPDGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFRNVLNQKS 432

Query: 1088 DETNEWTASK---PDLLRFVASMPSHMKISWNLMSSYLV 1195
            D      +SK   PDLLRFVASMPSHMKISWNLMSSYLV
Sbjct: 433  DNLFPTLSSKPDGPDLLRFVASMPSHMKISWNLMSSYLV 471


>ref|XP_006385075.1| hypothetical protein POPTR_0004s23670g [Populus trichocarpa]
            gi|550341843|gb|ERP62872.1| hypothetical protein
            POPTR_0004s23670g [Populus trichocarpa]
          Length = 462

 Score =  561 bits (1446), Expect = e-157
 Identities = 274/396 (69%), Positives = 322/396 (81%)
 Frame = +2

Query: 8    VTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKENNFTCSLEKIKHDHVMESG 187
            VTAISWVK+YF +I+   IQ HFNK LV IE  +  +  +       + KIK   VME G
Sbjct: 67   VTAISWVKYYFDEIQDSVIQSHFNKSLVQIECPSSSDSVEMEGLGKPMRKIKPSDVMEVG 126

Query: 188  VRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPVNG 367
             RIH+PVSV ET I+KR+ TIP+ TL PNADEIEY++RLV +KDSA+ VLNKPPKVPV G
Sbjct: 127  ARIHIPVSVAETAISKRFDTIPSGTLYPNADEIEYLQRLVKYKDSALLVLNKPPKVPVKG 186

Query: 368  NLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVNLA 547
            N+P+HNSMD LAAAALS G D+GPKLVHRLDRESSGLLLMGRTKES   L  LF+ +N A
Sbjct: 187  NMPIHNSMDALAAAALSYGYDEGPKLVHRLDRESSGLLLMGRTKESIAHLQLLFSYINKA 246

Query: 548  KSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSGIDG 727
            +S    WN+ACEAT QRYWALVIG+PK+KEG+ISA L+KV+L+DGK ERV+LA  S ++ 
Sbjct: 247  QSKCHAWNDACEATYQRYWALVIGSPKDKEGLISARLSKVLLDDGKTERVVLAQHSSLEP 306

Query: 728  SQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQRWK 907
            S++A TEYRV+GPTINGCSWIEL PLTSRKHQLRVHCAEALGTPIVGDYKYGWFV +RWK
Sbjct: 307  SRDAVTEYRVLGPTINGCSWIELRPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVHRRWK 366

Query: 908  QMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSGEWL 1087
            QMPR D EPSSG+PYKLR PEG+ +QKGSVL+KVPLLHLHCRE+V+PNI+KFL       
Sbjct: 367  QMPRVDIEPSSGKPYKLRWPEGVDIQKGSVLAKVPLLHLHCRELVLPNIAKFLDVLDGKS 426

Query: 1088 DETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            +  +   +++PDLLRFVASMPSHMKISWNLMSS+LV
Sbjct: 427  ENVHPALSTRPDLLRFVASMPSHMKISWNLMSSFLV 462


>ref|XP_006601250.1| PREDICTED: RNA pseudouridine synthase 3, mitochondrial-like isoform
            X1 [Glycine max]
          Length = 476

 Score =  557 bits (1436), Expect = e-156
 Identities = 268/396 (67%), Positives = 321/396 (81%)
 Frame = +2

Query: 8    VTAISWVKHYFADIEQEAIQMHFNKGLVYIESSNQDNQAKENNFTCSLEKIKHDHVMESG 187
            VTA++W+K+YF       I+ HF +GLV +E+ +   Q +E      + KI+ + VM+ G
Sbjct: 83   VTAVNWIKYYFKGTWGSVIESHFREGLVQMEADDSSTQKEEQ--MKPMRKIRPNEVMKRG 140

Query: 188  VRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPVNG 367
             R+H+PVS+ ET+I+KRY  IP+ TL PNADEI+Y++RLVI+KDSAI VLNKPPK+PV G
Sbjct: 141  ARVHVPVSICETRISKRYDAIPSGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVKG 200

Query: 368  NLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVNLA 547
            +LPVHNSMD LAAAALS   D+GPKLVHRLDRESSG+LL+GRTK+S + L WLF+N+N A
Sbjct: 201  SLPVHNSMDALAAAALSYDYDEGPKLVHRLDRESSGILLLGRTKDSVSHLQWLFSNINNA 260

Query: 548  KSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSGIDG 727
            KSS + WN ACEAT QRYWALVIGTPKEKEG+I APL+KV+LNDGK ER+ILAH S ++ 
Sbjct: 261  KSSCKDWNEACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILAHHSSVEP 320

Query: 728  SQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQRWK 907
             QEA TEYRV+GP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV  RWK
Sbjct: 321  RQEAVTEYRVLGPQINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRWK 380

Query: 908  QMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSGEWL 1087
            QMPR D EP++G+PYKLRRPEGL VQKGSVLSKVPLLHLHCRE+V+PNI KF+       
Sbjct: 381  QMPRVDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIVKFMHVLNNSS 440

Query: 1088 DETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            +E       +PD+LRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 441  EELRTSLREQPDVLRFVATMPSHMRISWNLMSSYLV 476


>gb|ESW32964.1| hypothetical protein PHAVU_001G032500g [Phaseolus vulgaris]
          Length = 480

 Score =  557 bits (1436), Expect = e-156
 Identities = 266/397 (67%), Positives = 323/397 (81%), Gaps = 1/397 (0%)
 Frame = +2

Query: 8    VTAISWVKHYFADIEQEAIQMHFNKGLVYIESS-NQDNQAKENNFTCSLEKIKHDHVMES 184
            VTA++W+K+YF       I+ HF +GLV +E     D+  ++ N    + KI+ + VM+ 
Sbjct: 84   VTAVNWIKYYFKGAWGSVIESHFREGLVQMEDEVTADSYTQKENLMKPMRKIRPNEVMKH 143

Query: 185  GVRIHLPVSVGETKITKRYSTIPTATLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPVN 364
            G R+H+PVS+ ET+++KRY  IP  TL PNADEI+Y++RLVI+KDSAI VLNKPPK+PV 
Sbjct: 144  GARVHVPVSIAETRVSKRYDAIPCGTLYPNADEIKYLQRLVIYKDSAIIVLNKPPKLPVK 203

Query: 365  GNLPVHNSMDILAAAALSNGSDQGPKLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVNL 544
            GNLPVHNSMD LAAAALS   D+GPKLVHRLDRE+SG+LL+GRTK+S + L WLFTN+N 
Sbjct: 204  GNLPVHNSMDALAAAALSYDYDEGPKLVHRLDRETSGILLLGRTKDSASHLQWLFTNINN 263

Query: 545  AKSSSEIWNNACEATMQRYWALVIGTPKEKEGVISAPLTKVVLNDGKGERVILAHPSGID 724
            AKSS + WN+ACEAT QRYWALVIGTPKEKEG+I APL+KV+LNDGK ER+ILA+ S ++
Sbjct: 264  AKSSCKAWNDACEATYQRYWALVIGTPKEKEGIIHAPLSKVLLNDGKTERIILANHSSVE 323

Query: 725  GSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYGWFVQQRW 904
              QEA TE+RV+GP INGCSW+EL PLT RKHQLRVHCAEALGTPIVGDYKYGWFV  RW
Sbjct: 324  PRQEAVTEFRVLGPKINGCSWVELRPLTYRKHQLRVHCAEALGTPIVGDYKYGWFVHSRW 383

Query: 905  KQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKFLGSSGEW 1084
            KQMPR D EP++G+PYKLRRPEGL VQKGSVLSKVPLLHLHCRE+V+PNI+KFL      
Sbjct: 384  KQMPRIDIEPTTGKPYKLRRPEGLDVQKGSVLSKVPLLHLHCRELVLPNIAKFLHVLNNS 443

Query: 1085 LDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
             +E +     +P++LRFVA+MPSHM+ISWNLMSSYLV
Sbjct: 444  SEELHSSLNQQPEVLRFVATMPSHMRISWNLMSSYLV 480


>gb|EMS66956.1| RNA pseudourine synthase 3, mitochondrial [Triticum urartu]
          Length = 400

 Score =  553 bits (1426), Expect = e-155
 Identities = 279/404 (69%), Positives = 317/404 (78%), Gaps = 35/404 (8%)
 Frame = +2

Query: 89   VYIESSNQDNQAKENNFTCS---LEKIKHDHVMESGVRIHLPVSVGETKITKRYSTIPTA 259
            VY E S+Q+  A+  +  C    L+KIKH  VME G+RIHLPVSV E +I KRY TIPTA
Sbjct: 10   VYTECSDQEVSAE--SIWCRKHHLKKIKHSEVMEPGMRIHLPVSVAEAEIKKRYETIPTA 67

Query: 260  TLNPNADEIEYMKRLVIHKDSAIFVLNKPPKVPVNGNLPVHNSMDILAAAALSNGSDQGP 439
            TL+PN DEIEY+KRLVI+KDSAI VLNKPPKVP+ GNLPVHNSMD+LAAAALS G+++GP
Sbjct: 68   TLHPNRDEIEYLKRLVIYKDSAILVLNKPPKVPMKGNLPVHNSMDVLAAAALSYGNEEGP 127

Query: 440  KLVHRLDRESSGLLLMGRTKESFTRLHWLFTNVNLAKSSSEIWNNACEATMQRYWALVIG 619
            KLVHRLDR++SGLLLMGRT+ESFTRLHWLFT++ LA+++S           QRYWALVIG
Sbjct: 128  KLVHRLDRDTSGLLLMGRTRESFTRLHWLFTSIKLARTAS-----------QRYWALVIG 176

Query: 620  TPKEKEGVISAPLTK--------------------------------VVLNDGKGERVIL 703
            TP E EGVISAPLTK                                V+L+DGK ERVIL
Sbjct: 177  TPTESEGVISAPLTKGSRDHARPQENSSLRCSNRCPKIGHRQEGNRDVLLDDGKAERVIL 236

Query: 704  AHPSGIDGSQEATTEYRVMGPTINGCSWIELCPLTSRKHQLRVHCAEALGTPIVGDYKYG 883
            AHPSGIDG+QEA TEYRVMGPTINGCSWIEL PLT RKHQLRVHCAEALGTPIVGDYKYG
Sbjct: 237  AHPSGIDGAQEAVTEYRVMGPTINGCSWIELRPLTGRKHQLRVHCAEALGTPIVGDYKYG 296

Query: 884  WFVQQRWKQMPRQDFEPSSGEPYKLRRPEGLAVQKGSVLSKVPLLHLHCREMVIPNISKF 1063
            WFV QRWKQ P+ DFEP +GEPYKLRRPEGL VQKGSVLSKVPLLHLHCREMV+PNI+KF
Sbjct: 297  WFVHQRWKQNPQPDFEPFTGEPYKLRRPEGLEVQKGSVLSKVPLLHLHCREMVVPNIAKF 356

Query: 1064 LGSSGEWLDETNEWTASKPDLLRFVASMPSHMKISWNLMSSYLV 1195
            L ++GEW D    W+  KP+LLRF+A +P+HMKISWN+MSSYLV
Sbjct: 357  LSNTGEWHDNGTPWSKEKPNLLRFIAPLPAHMKISWNIMSSYLV 400