BLASTX nr result
ID: Zingiber25_contig00016386
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Zingiber25_contig00016386
(3162 letters)
Database: ./nr
37,332,560 sequences; 13,225,080,153 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1327 0.0
ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group] g... 1318 0.0
gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japo... 1318 0.0
ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 1316 0.0
ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [S... 1313 0.0
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1313 0.0
ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1309 0.0
ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, m... 1308 0.0
sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymeras... 1300 0.0
gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus pe... 1299 0.0
tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays] 1299 0.0
dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymer... 1296 0.0
sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymeras... 1295 0.0
ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays] gi|... 1293 0.0
gb|EOY01553.1| DNA-directed RNA polymerase isoform 1 [Theobroma ... 1287 0.0
ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citr... 1283 0.0
ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1282 0.0
gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Tritic... 1281 0.0
ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Popu... 1280 0.0
ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 1280 0.0
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
protein product [Vitis vinifera]
Length = 1035
Score = 1327 bits (3434), Expect = 0.0
Identities = 671/1030 (65%), Positives = 803/1030 (77%), Gaps = 27/1030 (2%)
Frame = -2
Query: 3023 HFNPSPSCRDTR--RSIARKSACISPRGVRFYSGRPLS----------------IPSISG 2898
+F P+P + T R+IA+++ +PR + +PLS I
Sbjct: 28 NFRPNPLKKPTVMWRNIAKRAIPRAPRKCVYLDSQPLSRRYSFLGFSQDLIFPEIMKFGT 87
Query: 2897 FHHGFLQKSSFSEKN--RVWDLEETLENRVG----GFFQNGESMPLAGCACPSIAADLKT 2736
F S FSE R+ ++ E+ VG G +N M +G CP K+
Sbjct: 88 FEPSSCSSSGFSEMGFRRIGEISSR-EDAVGRPSFGCLRN--QMGFSGF-CP------KS 137
Query: 2735 HASVAEMAASTDTDEETSSLLNFRSILDRIGKFEVTLECEEDKSFSRFRSARLFQHYSKL 2556
+ASVAE +STD +E+ S+ + +L + K EE + + R +L K+
Sbjct: 138 YASVAEAVSSTDVEEDVSASDEIQELLGEMKK-------EEKRQVNFKRREKL-----KM 185
Query: 2555 VGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFEP 2376
GM + Y +LRRRQ++IE+EAWE A KEYKE+L DMC++KLAPNLP+MKSL LGWFEP
Sbjct: 186 ERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKSLFLGWFEP 245
Query: 2375 LRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQAA 2196
LRD I +EQE CR N+A++APYF+QLPAD M+VITMHK++ LLM+ E VVQAA
Sbjct: 246 LRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHGSTRVVQAA 305
Query: 2195 CKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGV--SVNEEQELIRKKVTNLMKRQKHH 2022
C IGDAIE E RI LE K+ E G V EQE +RKKVTNLMK+QK H
Sbjct: 306 CVIGDAIEQEVRIHNFLEKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVTNLMKKQKLH 365
Query: 2021 IVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAAD-PPDLRPAFRHYV 1845
R+++KG D+S+PWG +A+AKVGSRLIELL++TAYIQ PV AD PPD+RPAF H
Sbjct: 366 AARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPDIRPAFVHTF 425
Query: 1844 KTIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLP 1665
KT+++E K I RRFGVIECDPL+ L+RTA HM+IPY+PMLVPPLKWTGYD+GAHLFLP
Sbjct: 426 KTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGYDKGAHLFLP 485
Query: 1664 SYVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLG 1485
SYVMRTHG+++QREAVKRAPR Q++ +FEAL+TLGNT+WR+NK++ ++++ IW+ GG L
Sbjct: 486 SYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDRIWAGGGCLA 545
Query: 1484 GLVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEK 1305
LVDR DVPLPEKPDTEDE +LR K NSERHS RCD+ELKLAVARKMK+E
Sbjct: 546 DLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKLAVARKMKDED 605
Query: 1304 GFYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANG 1125
GF+YPHNLDFRGRAYPMHPYLNHLGSD+CRG+LEFAEGRPLG SGL WLKIHLANL+A G
Sbjct: 606 GFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLKIHLANLFAGG 665
Query: 1124 VDKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPE 945
VDKLSH+ R+ FTENHL+D+FDSAD+PLEG+RWWL AEDPFQ LA CINL+EALRSS+PE
Sbjct: 666 VDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINLSEALRSSSPE 725
Query: 944 NTVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDA 765
T+SHIPVHQDGSCNGLQHYAALG+D+LGA +VNLVAG++PADVYS IA RVL+IM RDA
Sbjct: 726 TTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAARVLDIMKRDA 785
Query: 764 EKGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTE 585
EK P+I P+AL A++LI+QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER+ +ADD E
Sbjct: 786 EKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERNAIADDVE 845
Query: 584 LFRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQK 405
LF A+CYAAK TLTALGEMFQAAR IM+WLGDCAK+IASEN PVRWTTPLGLPVVQPY+K
Sbjct: 846 LFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTPLGLPVVQPYRK 905
Query: 404 LGSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAG 225
LG H++KTSLQVLTL+RET+ +MV+RQRTAFPPNFVHSLDGSHMMMTA+AC++AGLNFAG
Sbjct: 906 LGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIACKKAGLNFAG 965
Query: 224 VHDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLN 45
VHDSYWTHACDVD+MNR+LREKFV+LYE PILENLLESFQQSFP L FPPLPERGDF+L
Sbjct: 966 VHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPPLPERGDFDLR 1025
Query: 44 DVLESPYFFN 15
+VLESPYFFN
Sbjct: 1026 EVLESPYFFN 1035
>ref|NP_001062659.1| Os09g0246200 [Oryza sativa Japonica Group]
gi|30698494|dbj|BAC76604.1| RpoT1 [Oryza sativa Japonica
Group] gi|37360973|dbj|BAC98395.1| T7 bacteriophage-type
single subunit RNA polymerase [Oryza sativa Japonica
Group] gi|113630892|dbj|BAF24573.1| Os09g0246200 [Oryza
sativa Japonica Group]
Length = 1017
Score = 1318 bits (3412), Expect = 0.0
Identities = 636/849 (74%), Positives = 731/849 (86%), Gaps = 2/849 (0%)
Frame = -2
Query: 2555 VGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFEP 2376
V G+ Y LRRRQIQIE+EAWEQA +EY+E+L DMC +KLAPNLP++KSL LGWFEP
Sbjct: 169 VHGVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEP 228
Query: 2375 LRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQAA 2196
LRD+I EQE E+G RASHA YFN LPAD MAVITMHK++ LLM+ S V V+QAA
Sbjct: 229 LRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAA 288
Query: 2195 CKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETG--VSVNEEQELIRKKVTNLMKRQKHH 2022
C+IG+AIEHE RI LE ++E G + +EQE +RKKVT+LMK+QK
Sbjct: 289 CQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIR 348
Query: 2021 IVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVK 1842
VR ++K QD+S+PWG+DA AKVGSRLIEL+IETAYIQ P SQSA PPD+RPAF H ++
Sbjct: 349 QVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMR 408
Query: 1841 TIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPS 1662
T+ +E++ SRR+GVI+CDPL+ LDRTA HM+IPYMPML+PP+ WTGYD+GAHLFLPS
Sbjct: 409 TVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPS 468
Query: 1661 YVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGG 1482
YVMRTHG+++QR+AV+RAPREQMQ++FEAL+TLG+T+WRVNK+VL+I++ IWS+GGRL
Sbjct: 469 YVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLAD 528
Query: 1481 LVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKG 1302
LVDR DV LPEKPDTEDE +L+ KENSERHS RCD+ELKLAVARKMK+E G
Sbjct: 529 LVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDG 588
Query: 1301 FYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGV 1122
FYYPHNLDFRGRAYPMHPYLNHLGSD+CRGVLEFAEGRPLGKSGLRWLKIHLANLYA GV
Sbjct: 589 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGV 648
Query: 1121 DKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPEN 942
DKLS+D R+AFTENHLED+FDSAD+PLEG+RWWLGAEDPFQ LAVCINL EALRS +PE
Sbjct: 649 DKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPET 708
Query: 941 TVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAE 762
+SHIPVHQDGSCNGLQHYAALG+DKLGAI+VNLVAG++PADVY+ IATRV+ IM DA
Sbjct: 709 MISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDAL 768
Query: 761 KGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTEL 582
K P+ +P+A A+LL+DQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLKERDM+ DD+EL
Sbjct: 769 KDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSEL 828
Query: 581 FRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKL 402
F ASCYAAK TLTALGEMFQAAR IM WLGDCAKVIA EN PVRWTTPLGLPVVQPY+KL
Sbjct: 829 FSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 888
Query: 401 GSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGV 222
G H++KTSLQVLTL+RETDKVMV+RQRTAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGV
Sbjct: 889 GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 948
Query: 221 HDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLND 42
HDSYWTHACDVD MN+ILREKFVELY+ PILENLLESF++SFP L FPPLPERGDF+L D
Sbjct: 949 HDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTD 1008
Query: 41 VLESPYFFN 15
VL SPYFFN
Sbjct: 1009 VLGSPYFFN 1017
>gb|EEE69251.1| hypothetical protein OsJ_28503 [Oryza sativa Japonica Group]
Length = 983
Score = 1318 bits (3412), Expect = 0.0
Identities = 636/849 (74%), Positives = 731/849 (86%), Gaps = 2/849 (0%)
Frame = -2
Query: 2555 VGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFEP 2376
V G+ Y LRRRQIQIE+EAWEQA +EY+E+L DMC +KLAPNLP++KSL LGWFEP
Sbjct: 135 VHGVGYHKYAMLRRRQIQIETEAWEQAAEEYRELLADMCQQKLAPNLPYVKSLFLGWFEP 194
Query: 2375 LRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQAA 2196
LRD+I EQE E+G RASHA YFN LPAD MAVITMHK++ LLM+ S V V+QAA
Sbjct: 195 LRDQIIAEQELVGERGARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAA 254
Query: 2195 CKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETG--VSVNEEQELIRKKVTNLMKRQKHH 2022
C+IG+AIEHE RI LE ++E G + +EQE +RKKVT+LMK+QK
Sbjct: 255 CQIGEAIEHEVRIHKFLEKTKKKSNKEMDNEEEGGDSDIAKEQERLRKKVTDLMKKQKIR 314
Query: 2021 IVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVK 1842
VR ++K QD+S+PWG+DA AKVGSRLIEL+IETAYIQ P SQSA PPD+RPAF H ++
Sbjct: 315 QVRNIVKKQDNSKPWGQDAHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMR 374
Query: 1841 TIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPS 1662
T+ +E++ SRR+GVI+CDPL+ LDRTA HM+IPYMPML+PP+ WTGYD+GAHLFLPS
Sbjct: 375 TVAREQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPS 434
Query: 1661 YVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGG 1482
YVMRTHG+++QR+AV+RAPREQMQ++FEAL+TLG+T+WRVNK+VL+I++ IWS+GGRL
Sbjct: 435 YVMRTHGARQQRDAVRRAPREQMQSVFEALNTLGSTKWRVNKRVLSIVDRIWSSGGRLAD 494
Query: 1481 LVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKG 1302
LVDR DV LPEKPDTEDE +L+ KENSERHS RCD+ELKLAVARKMK+E G
Sbjct: 495 LVDRTDVALPEKPDTEDEDKLKKWRWTLRAAKKENSERHSQRCDVELKLAVARKMKDEDG 554
Query: 1301 FYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGV 1122
FYYPHNLDFRGRAYPMHPYLNHLGSD+CRGVLEFAEGRPLGKSGLRWLKIHLANLYA GV
Sbjct: 555 FYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGV 614
Query: 1121 DKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPEN 942
DKLS+D R+AFTENHLED+FDSAD+PLEG+RWWLGAEDPFQ LAVCINL EALRS +PE
Sbjct: 615 DKLSYDGRIAFTENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPET 674
Query: 941 TVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAE 762
+SHIPVHQDGSCNGLQHYAALG+DKLGAI+VNLVAG++PADVY+ IATRV+ IM DA
Sbjct: 675 MISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVVEIMKNDAL 734
Query: 761 KGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTEL 582
K P+ +P+A A+LL+DQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLKERDM+ DD+EL
Sbjct: 735 KDPATDPDAARARLLLDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMICDDSEL 794
Query: 581 FRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKL 402
F ASCYAAK TLTALGEMFQAAR IM WLGDCAKVIA EN PVRWTTPLGLPVVQPY+KL
Sbjct: 795 FSASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKL 854
Query: 401 GSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGV 222
G H++KTSLQVLTL+RETDKVMV+RQRTAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGV
Sbjct: 855 GRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGV 914
Query: 221 HDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLND 42
HDSYWTHACDVD MN+ILREKFVELY+ PILENLLESF++SFP L FPPLPERGDF+L D
Sbjct: 915 HDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPELKFPPLPERGDFDLTD 974
Query: 41 VLESPYFFN 15
VL SPYFFN
Sbjct: 975 VLGSPYFFN 983
>ref|XP_004956403.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like
[Setaria italica]
Length = 1005
Score = 1316 bits (3407), Expect = 0.0
Identities = 633/847 (74%), Positives = 734/847 (86%), Gaps = 2/847 (0%)
Frame = -2
Query: 2549 GMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFEPLR 2370
GM+ Y LRRRQI++E+EAWEQA KEY+E+L DMC++KLAPNLP++KSL LGWFEPLR
Sbjct: 159 GMTYHKYASLRRRQIRVETEAWEQAAKEYRELLTDMCEQKLAPNLPYIKSLFLGWFEPLR 218
Query: 2369 DRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQAACK 2190
D+IA EQE +G+RASH PYFN LPAD MAVITMHK++ LLM+ S V V+QAAC+
Sbjct: 219 DQIAAEQELVANRGSRASHGPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 278
Query: 2189 IGDAIEHEGRIQWILEXXXXXXXXXXKSDET--GVSVNEEQELIRKKVTNLMKRQKHHIV 2016
IG+AIEHE RI LE +++E + +EQ+ +RKKVT+LMK+QK V
Sbjct: 279 IGEAIEHEVRIHRFLEKTRKKSNKEKENEEEIFDSDIAKEQQRLRKKVTDLMKKQKLRQV 338
Query: 2015 RKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVKTI 1836
RK++K QDDSRPWG+DA AKVGSRLIEL IETA+IQ P SQS+ PD+RPAFRH ++T+
Sbjct: 339 RKIVKNQDDSRPWGQDAHAKVGSRLIELFIETAHIQPPASQSSDGLPDIRPAFRHEMRTV 398
Query: 1835 IKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPSYV 1656
KE++ SRR+GVI+CDPL+ LDRTA HM+IPYMPML+PP+ WTGYD+GAHLFLPSYV
Sbjct: 399 PKEQQKHSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPICWTGYDKGAHLFLPSYV 458
Query: 1655 MRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGGLV 1476
MRTHG+++QREAVKRAPREQMQ++FEAL+TLG+T+WRVNK+VL+II+ IWS+GGRL LV
Sbjct: 459 MRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNKRVLSIIDRIWSSGGRLADLV 518
Query: 1475 DREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKGFY 1296
DR DVPLPEKPDTEDE L+ K NSERHS RCD+ELKLAVARKMK+E+GFY
Sbjct: 519 DRTDVPLPEKPDTEDETVLKKWRWHTRSVKKGNSERHSQRCDVELKLAVARKMKDEEGFY 578
Query: 1295 YPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGVDK 1116
YPHNLDFRGRAYPMHPYLNHLGSD+CRGVLEFAEGRPLG+SGLRWLKIHLANLYA GVDK
Sbjct: 579 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGESGLRWLKIHLANLYAGGVDK 638
Query: 1115 LSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPENTV 936
LS+ R+AF ENHLE++FDSAD+PLEG+RWWLGAEDPFQ LAVC+NL EALRS +PE T+
Sbjct: 639 LSYAGRIAFAENHLEEIFDSADRPLEGKRWWLGAEDPFQCLAVCMNLTEALRSPSPEATI 698
Query: 935 SHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAEKG 756
SHIPVHQDGSCNGLQHYAALG+DKLGAI+VNLVAG++PADVYS IATRV+ IM RD++K
Sbjct: 699 SHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYSGIATRVVEIMRRDSQKD 758
Query: 755 PSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTELFR 576
PS +P+A A+L++DQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLKER ++ADD ELF
Sbjct: 759 PSTDPDAARARLILDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDAELFG 818
Query: 575 ASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKLGS 396
ASCYAAK TLTALGEMFQAAR IM WLGDCAKVIA EN PV+WTTPLGLPVVQPY+KLG
Sbjct: 819 ASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPVKWTTPLGLPVVQPYRKLGR 878
Query: 395 HMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGVHD 216
H++KTSLQVLTL+RETDKVMV+RQRTAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGVHD
Sbjct: 879 HLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHD 938
Query: 215 SYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLNDVL 36
SYWTHACDVD MN+ILREKFVELY+ PILENLLESF++SFP L FPPLPERGDF++ DVL
Sbjct: 939 SYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSFPKLKFPPLPERGDFDMKDVL 998
Query: 35 ESPYFFN 15
ESPYFFN
Sbjct: 999 ESPYFFN 1005
>ref|XP_002461035.1| hypothetical protein SORBIDRAFT_02g039520 [Sorghum bicolor]
gi|241924412|gb|EER97556.1| hypothetical protein
SORBIDRAFT_02g039520 [Sorghum bicolor]
Length = 976
Score = 1313 bits (3398), Expect = 0.0
Identities = 631/867 (72%), Positives = 739/867 (85%), Gaps = 5/867 (0%)
Frame = -2
Query: 2600 SRFRSARLFQHYSKLVG--GMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKL 2427
SR R + +H + GM+ Y LRRRQI++E+EAWEQA KEY+E+L DMC++KL
Sbjct: 110 SRHRRSGRGRHVEVMAAEHGMTYHRYTSLRRRQIRVETEAWEQAAKEYRELLADMCEQKL 169
Query: 2426 APNLPFMKSLLLGWFEPLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMIS 2247
APNLP++KSL LGWFEPLRD+I EQE + G+RASH PYFN LPAD MAVITMHK++
Sbjct: 170 APNLPYIKSLFLGWFEPLRDQIVTEQELVADPGSRASHGPYFNMLPADMMAVITMHKLMG 229
Query: 2246 LLMSSSESRCVPVVQAACKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGVS---VNEE 2076
LLM+ S V V+QAAC+IG+AIEHE RI LE + +E + +E
Sbjct: 230 LLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKSNKEMEKEEEAAGDTDIAKE 289
Query: 2075 QELIRKKVTNLMKRQKHHIVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVS 1896
Q+ +RKKVT+LMK+QK VR ++K QD+SRPWG+D QAKVGSRLIEL ++TA+IQ P S
Sbjct: 290 QQRLRKKVTDLMKKQKLRQVRNIVKNQDNSRPWGQDVQAKVGSRLIELFMDTAHIQPPAS 349
Query: 1895 QSAADPPDLRPAFRHYVKTIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLV 1716
QS+ PD+RPAFRH ++T+ KE++ SRR+GVI+CDPL+ LDRTA HM+IPYMPML+
Sbjct: 350 QSSDGLPDIRPAFRHEMRTVAKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLI 409
Query: 1715 PPLKWTGYDRGAHLFLPSYVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNK 1536
PP+ WTGYD+GAHLFLPSYVMRTHG+++QREAVKRAPREQMQ++FEAL+TLG+T+WRVNK
Sbjct: 410 PPICWTGYDKGAHLFLPSYVMRTHGARQQREAVKRAPREQMQSVFEALNTLGSTKWRVNK 469
Query: 1535 KVLNIINTIWSNGGRLGGLVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHR 1356
+VL+I++ IWS+GGRL LVDR DVPLPEKPDTEDE ++ KENSERHS R
Sbjct: 470 RVLSIVDRIWSSGGRLADLVDRTDVPLPEKPDTEDETLIKNWKWHLRSVKKENSERHSQR 529
Query: 1355 CDMELKLAVARKMKEEKGFYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGK 1176
CD+ELKLAVARKMK+E+GFYYPHNLDFRGRAYPMHPYLNHLGSD+CRG+LEFAEGRPLGK
Sbjct: 530 CDVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGK 589
Query: 1175 SGLRWLKIHLANLYANGVDKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQL 996
SGL WLKIHLANLYA GVDKLS+D RVAFTENHLE++FDSAD+PLEG+RWWLGAEDPFQ
Sbjct: 590 SGLHWLKIHLANLYAGGVDKLSYDGRVAFTENHLEEIFDSADRPLEGKRWWLGAEDPFQC 649
Query: 995 LAVCINLAEALRSSTPENTVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPAD 816
LAVC+NL EALRSS+PE T+SHIPVHQDGSCNGLQHYAALG+DKLGAI+VNLVAG++PAD
Sbjct: 650 LAVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVAGEKPAD 709
Query: 815 VYSSIATRVLNIMCRDAEKGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGARE 636
VY+ IATRVL IM DA+K PSI+P+ A+L++DQVDRKLVKQTVMTSVYGVTY+GAR+
Sbjct: 710 VYTGIATRVLEIMRMDAQKDPSIDPDVARARLIVDQVDRKLVKQTVMTSVYGVTYVGARD 769
Query: 635 QIKRRLKERDMMADDTELFRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHP 456
QIKRRLKER ++ D+ ELF ASCYAAK TLTALGEMFQAAR IM WLGDCAKVIA EN P
Sbjct: 770 QIKRRLKERGVIPDEAELFGASCYAAKVTLTALGEMFQAARGIMNWLGDCAKVIACENEP 829
Query: 455 VRWTTPLGLPVVQPYQKLGSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSH 276
VRWTTPLGLPVVQPY+KLG H++KTSLQVLTL+RETDKVMV+RQRTAFPPNFVHSLDGSH
Sbjct: 830 VRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSH 889
Query: 275 MMMTAVACQRAGLNFAGVHDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSF 96
MMMTAVAC+R GLNFAGVHDSYWTHACDVD MN+ILREKFVELY+ PILENLLESF++SF
Sbjct: 890 MMMTAVACKRQGLNFAGVHDSYWTHACDVDTMNKILREKFVELYDTPILENLLESFEKSF 949
Query: 95 PTLSFPPLPERGDFNLNDVLESPYFFN 15
P L FPPLPERGDF++ +VLESPYFFN
Sbjct: 950 PKLKFPPLPERGDFDMKEVLESPYFFN 976
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1313 bits (3397), Expect = 0.0
Identities = 640/909 (70%), Positives = 755/909 (83%)
Frame = -2
Query: 2741 KTHASVAEMAASTDTDEETSSLLNFRSILDRIGKFEVTLECEEDKSFSRFRSARLFQHYS 2562
K +AS AE AS +E+ S + + +++ + K DK +
Sbjct: 91 KGYASAAEAIAS---EEDMSGVDEVQELVEEVNK--------GDK----------LEKQP 129
Query: 2561 KLVGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWF 2382
KL+GG+++ + LRRRQI++E+EAWE+A KEY+E+L DMC++KLAPNLP++KSL LGWF
Sbjct: 130 KLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCEQKLAPNLPYIKSLFLGWF 189
Query: 2381 EPLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQ 2202
EPLRD IA EQ+ C++ NRA++APYF+ LPAD MAVITMHK++ LLM+ + VVQ
Sbjct: 190 EPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHKLMGLLMTGEGNGSARVVQ 249
Query: 2201 AACKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGVSVNEEQELIRKKVTNLMKRQKHH 2022
AAC IG+AIEHE RIQ +E D V +EQE +RKKV+ LMK+QK
Sbjct: 250 AACHIGEAIEHEVRIQRFMEKTKKKSASSNNPDGGSNPVTKEQEKLRKKVSMLMKKQKLQ 309
Query: 2021 IVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVK 1842
VR+++K QDDS+PWG+DA KVGSRLIELLIETAYIQ P Q PPD+RPAF H +K
Sbjct: 310 QVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQPPADQLGDGPPDIRPAFVHTLK 369
Query: 1841 TIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPS 1662
T+IKE + +RR+GVIECDPL+ L++TA HM+IPYMPMLVPPL WTGYD+GA+LFLPS
Sbjct: 370 TVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMPMLVPPLNWTGYDKGAYLFLPS 429
Query: 1661 YVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGG 1482
YVMR HG+++QREA+KRAPR+ ++ FEAL+TLGNT+WR+NK+VL +I+ IW++GGRL
Sbjct: 430 YVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWRINKRVLGVIDRIWASGGRLAD 489
Query: 1481 LVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKG 1302
LVDREDVPLPE+PDTEDE E+R KENSERHS RCD+ELKLAVARKMK+E G
Sbjct: 490 LVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERHSQRCDIELKLAVARKMKDEDG 549
Query: 1301 FYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGV 1122
F+YPHNLDFRGRAYPMHPYLNHLGSD+CRG+LEFAEGRPLGKSGLRWLKIHLAN+YA GV
Sbjct: 550 FFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLRWLKIHLANVYAGGV 609
Query: 1121 DKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPEN 942
DKLS++ RVAFTENHLED+FDSAD+PLEGRRWWL AEDPFQ LA CINL+EALRSS+PE
Sbjct: 610 DKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDPFQCLATCINLSEALRSSSPET 669
Query: 941 TVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAE 762
T+SH+PVHQDGSCNGLQHYAALG+DKLGA +VNLVAG++PADVYS IA RVL+IM RDA+
Sbjct: 670 TISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMQRDAQ 729
Query: 761 KGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTEL 582
K P+ PNAL A+LLI QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER +AD+ E+
Sbjct: 730 KDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERCAIADEGEV 789
Query: 581 FRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKL 402
F ASCYAAKTTLTALGEMF+AAR IM+WLGDCAKVIASENHPVRW TPLGLPVVQPY+KL
Sbjct: 790 FSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASENHPVRWNTPLGLPVVQPYRKL 849
Query: 401 GSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGV 222
G H++KTSLQVL+L+RETDKVMV+RQRTAFPPNFVHSLDGSHMMMTAVACQ+AGLNFAGV
Sbjct: 850 GRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACQKAGLNFAGV 909
Query: 221 HDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLND 42
HDSYWTHACDVD+MNRILREKFVELY PILENLLE FQ+SFPTL+FPPLPERGDF+L +
Sbjct: 910 HDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQKSFPTLNFPPLPERGDFDLRE 969
Query: 41 VLESPYFFN 15
VLESPYFFN
Sbjct: 970 VLESPYFFN 978
>ref|XP_003577161.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Brachypodium
distachyon]
Length = 992
Score = 1309 bits (3388), Expect = 0.0
Identities = 636/863 (73%), Positives = 735/863 (85%), Gaps = 2/863 (0%)
Frame = -2
Query: 2597 RFRSARLFQHYSKLVGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPN 2418
R RS R Q GM S Y LR+RQ++IE+EAWEQA KEY+E+L DMC+ KLAPN
Sbjct: 130 RSRSGRGRQATEAAAHGMGSSKYAALRQRQVRIETEAWEQAAKEYRELLADMCEHKLAPN 189
Query: 2417 LPFMKSLLLGWFEPLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLM 2238
LP++KSL LGWFEPLRD+I EQE E+G RASHAPYFN LPAD MAVITMHK++ LLM
Sbjct: 190 LPYVKSLFLGWFEPLRDQIIAEQELVGERGARASHAPYFNMLPADMMAVITMHKLMGLLM 249
Query: 2237 SSSESRCVPVVQAACKIGDAIEHEGRIQWILEXXXXXXXXXXKSD-ETGVS-VNEEQELI 2064
+ S V V+QAAC+IG+AIEHE RI LE + E G S + +EQ+ +
Sbjct: 250 TGSGDGSVRVIQAACQIGEAIEHEVRIHKFLEKTKKKNTKEVDNVVEAGDSDIAKEQQRL 309
Query: 2063 RKKVTNLMKRQKHHIVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAA 1884
RKKVT+LMK+QK VR ++K QD +RPWG+DA AKVGSRLIELLIETA+IQ PVSQSA
Sbjct: 310 RKKVTDLMKKQKIRQVRNIVKKQDSTRPWGQDAHAKVGSRLIELLIETAHIQPPVSQSAD 369
Query: 1883 DPPDLRPAFRHYVKTIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLK 1704
PD+RPAF H ++T+ +E++ SRR+GVI+CDPLI LDRTA HM+IPYMPML+PP+
Sbjct: 370 STPDIRPAFTHEMRTVTREQQKSSRRYGVIKCDPLIRQGLDRTAKHMVIPYMPMLIPPIS 429
Query: 1703 WTGYDRGAHLFLPSYVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLN 1524
WTGYD+GAHLFLPSYVMRTHG+++QREAVK+AP+EQMQ IFEALDTLG+T+WR+NKKVL+
Sbjct: 430 WTGYDKGAHLFLPSYVMRTHGARQQREAVKKAPKEQMQLIFEALDTLGSTKWRINKKVLS 489
Query: 1523 IINTIWSNGGRLGGLVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDME 1344
I++ IWS+GGRL LVDR DV LPEKPDTEDE EL+ KENSERHS RCD+E
Sbjct: 490 IVDRIWSSGGRLADLVDRTDVALPEKPDTEDETELKKWRWNLRSVKKENSERHSQRCDVE 549
Query: 1343 LKLAVARKMKEEKGFYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLR 1164
LKLAVARKMK+E GFYYPHNLDFRGRAYPMHPYLNHLGSD+CRGVLEF+EGRPLG SGL
Sbjct: 550 LKLAVARKMKDEVGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGDSGLC 609
Query: 1163 WLKIHLANLYANGVDKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVC 984
WLKIHLANLYA GVDKLS+D R+AFTENHLED+FDSA++PLEG+RWWLGAEDPFQ LAVC
Sbjct: 610 WLKIHLANLYAGGVDKLSYDGRIAFTENHLEDIFDSANRPLEGKRWWLGAEDPFQCLAVC 669
Query: 983 INLAEALRSSTPENTVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSS 804
++L EALRSS+PE +SHIPVHQDGSCNGLQHYAALG+DKLGAI+VNLV+G++PADVYS
Sbjct: 670 MDLTEALRSSSPEAMISHIPVHQDGSCNGLQHYAALGRDKLGAIAVNLVSGEKPADVYSG 729
Query: 803 IATRVLNIMCRDAEKGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKR 624
IATRV+ IM RDA+K P+++P+A A+LL+DQVDRKLVKQTVMTSVYGVTY+GAREQIKR
Sbjct: 730 IATRVVEIMRRDAQKDPALDPDAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKR 789
Query: 623 RLKERDMMADDTELFRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWT 444
RLKER ++ DD+ELF ASCYAAK TLTALGEMF+AAR IM WLGDCAKVIA EN PVRW
Sbjct: 790 RLKERGVIGDDSELFAASCYAAKVTLTALGEMFEAARSIMNWLGDCAKVIACENEPVRWM 849
Query: 443 TPLGLPVVQPYQKLGSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMT 264
TPLGLPVVQPY+KLG H++KTSLQVLTL+RETDKVMV+RQRTAFPPNFVHSLDGSHMMMT
Sbjct: 850 TPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMT 909
Query: 263 AVACQRAGLNFAGVHDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLS 84
AVAC + GL FAGVHDSYWTHACDVD MN+ILREKFVELY+ PILENLL+SF+ SFPTL
Sbjct: 910 AVACNKQGLYFAGVHDSYWTHACDVDTMNKILREKFVELYDAPILENLLDSFETSFPTLR 969
Query: 83 FPPLPERGDFNLNDVLESPYFFN 15
FPPLPERGDF+LNDVL+SPYFFN
Sbjct: 970 FPPLPERGDFDLNDVLQSPYFFN 992
>ref|XP_006660444.1| PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial-like isoform
X2 [Oryza brachyantha]
Length = 839
Score = 1308 bits (3384), Expect = 0.0
Identities = 630/838 (75%), Positives = 725/838 (86%), Gaps = 2/838 (0%)
Frame = -2
Query: 2522 LRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFEPLRDRIAREQEK 2343
LRRRQ+QIE+EAWEQA KEY+E+L DMC+ KLAPNLP++KSL LGWFEPLRD+I EQ+
Sbjct: 2 LRRRQVQIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLGWFEPLRDQIIAEQDL 61
Query: 2342 CREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQAACKIGDAIEHEG 2163
E+ RASHA YFN LPAD MAVITMHK++ LLM+ S V V+QAAC+IG+AIEHE
Sbjct: 62 VCERRARASHARYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQIGEAIEHEV 121
Query: 2162 RIQWILEXXXXXXXXXXKSDE-TGVS-VNEEQELIRKKVTNLMKRQKHHIVRKMIKGQDD 1989
R+ LE ++E G S + +EQE +RKKVT+LMK+ K VR ++K QD+
Sbjct: 122 RLHKFLEKPKKKRSKEMDNEEEVGCSDIAKEQERLRKKVTDLMKKHKLRQVRYIVKKQDN 181
Query: 1988 SRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVKTIIKEEKNISR 1809
S+PWG+D AKVGSRLIEL+IETAYIQ P SQSA PPD+RPAF H ++T+ KE++ SR
Sbjct: 182 SKPWGQDVHAKVGSRLIELMIETAYIQPPASQSADGPPDIRPAFTHEMRTVAKEQQKSSR 241
Query: 1808 RFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPSYVMRTHGSKKQ 1629
R+GVI+CDPL+ LDRTA HM+IPYMPML+PP+ WTGYD+GAHLFLPSYVMRTHG+++Q
Sbjct: 242 RYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPISWTGYDKGAHLFLPSYVMRTHGARQQ 301
Query: 1628 REAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGGLVDREDVPLPE 1449
REAVKRAPREQMQ++FEALDTLG+T+WRVNK+VL+I++ IWS+GGRL LVDR DV LPE
Sbjct: 302 REAVKRAPREQMQSVFEALDTLGSTKWRVNKRVLSIVDRIWSSGGRLADLVDRSDVALPE 361
Query: 1448 KPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKGFYYPHNLDFRG 1269
KPDTEDE +L+ KENSERHS RCD+ELKLAVARKMK+E+GFYYPHNLDFRG
Sbjct: 362 KPDTEDEAKLKKWRWNLKAAKKENSERHSQRCDVELKLAVARKMKDEEGFYYPHNLDFRG 421
Query: 1268 RAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGVDKLSHDARVAF 1089
RAYPMHPYLNHLGSD+CRGVLEFAEGRPLGKSGLRWLKIHLANLYA GVDKLS+D R+AF
Sbjct: 422 RAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRIAF 481
Query: 1088 TENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPENTVSHIPVHQDG 909
TENHLED+FDSAD+PLEG+RWWLGAEDPFQ LAVCINL EALRS +PE +SHIPVHQDG
Sbjct: 482 TENHLEDIFDSADRPLEGKRWWLGAEDPFQCLAVCINLTEALRSPSPETMISHIPVHQDG 541
Query: 908 SCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAEKGPSINPNALH 729
SCNGLQHYAALG+DKLGAI+VNLVAG++PADVY+ IATRVL IM DA K P+ +P+A
Sbjct: 542 SCNGLQHYAALGRDKLGAIAVNLVAGEKPADVYTGIATRVLEIMRNDALKDPATDPDAAR 601
Query: 728 AKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTELFRASCYAAKTT 549
A++L+DQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLKERDM+ DD+ELF ASCYAAK T
Sbjct: 602 ARMLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERDMIGDDSELFSASCYAAKVT 661
Query: 548 LTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKLGSHMVKTSLQV 369
LTALGEMFQAAR IM WLGDCAK+IA EN PV+WTTPLGLPVVQPY+KLG H++KTSLQV
Sbjct: 662 LTALGEMFQAARSIMNWLGDCAKIIACENEPVKWTTPLGLPVVQPYRKLGRHLIKTSLQV 721
Query: 368 LTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGVHDSYWTHACDV 189
LTL+RETDKVMV+RQRTAFPPNFVHSLDGSHMMMTAVAC+R GLNFAGVHDSYWTHACDV
Sbjct: 722 LTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKRQGLNFAGVHDSYWTHACDV 781
Query: 188 DQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLNDVLESPYFFN 15
D MN+ILREKFVELY+ PILENLL SF++SFP L FPPLPERGDF+L DVL SPYFFN
Sbjct: 782 DTMNKILREKFVELYDTPILENLLGSFEKSFPELKFPPLPERGDFDLKDVLGSPYFFN 839
>sp|Q8VWF8.2|RPOT2_NICSY RecName: Full=DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial; AltName: Full=NsRpoT-B;
AltName: Full=T7 bacteriophage-type single subunit RNA
polymerase 2; Flags: Precursor
gi|21425639|emb|CAC82575.2| phage-type RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1300 bits (3363), Expect = 0.0
Identities = 643/968 (66%), Positives = 775/968 (80%), Gaps = 10/968 (1%)
Frame = -2
Query: 2888 GFLQKSSFSEKNRVWDLEE-TLENRVGGFFQNGE--------SMPLAGCACPSIAADLKT 2736
GF Q S F + + L + N V GF GE S PL + K+
Sbjct: 64 GFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLIKNQVNNNFCCRKS 123
Query: 2735 HASVAEMAASTDTDEETSSLLNFRSILDRIGKFEVTLECEEDKSFS-RFRSARLFQHYSK 2559
+ASVAE A + TD E S++D + + L+ EE K F+ R R R+
Sbjct: 124 YASVAEAVAVSSTDAEEDV-----SVVDEVHELLTELKKEEKKQFAFRRRKQRM------ 172
Query: 2558 LVGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFE 2379
L GM Y L+RRQ+++E+EAWEQA KEYKE+L DMC++KLAPNLP++KSL LGWFE
Sbjct: 173 LTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFE 232
Query: 2378 PLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQA 2199
PLRD+IA EQE C + ++A++A YF QLPAD MAVITMHK++ LLM+ + VVQA
Sbjct: 233 PLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQA 292
Query: 2198 ACKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGVSVNEEQELIRKKVTNLMKRQKHHI 2019
A IGDAIE E RI LE K E G V +EQE +RKKVTNLMK+QK
Sbjct: 293 ALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRA 352
Query: 2018 VRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVKT 1839
V ++++ QDDS+PWG+DA+AKVGSRLI+LL++TAYIQ P +Q A DPPD+RPAF H V+T
Sbjct: 353 VGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIRPAFVHSVRT 412
Query: 1838 IIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPSY 1659
+ KE K+ SRR+G+I+CD L++ L+RTA HM+IPYMPMLVPP+KWTGYD+G HL+LPSY
Sbjct: 413 VAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSY 472
Query: 1658 VMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGGL 1479
VMRTHG+++QREAVKRA R Q+Q +FEALDTLGNT+WR+NK+VL++++ IW+ GGRL L
Sbjct: 473 VMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADL 532
Query: 1478 VDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKGF 1299
VDR+D PLPE+PDTEDE KEN ERHS RCD+ELKLAVARKMK+E+ F
Sbjct: 533 VDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESF 592
Query: 1298 YYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGVD 1119
+YPHN+DFRGRAYPMHP+LNHLGSDICRGVLEFAEGRPLG+SGLRWLKIHLANL+A GV+
Sbjct: 593 FYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVE 652
Query: 1118 KLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPENT 939
KLS + R+ FTENH++D+FDS+DKPLEGRRWWL AEDPFQ LAVCINL+EA+RSS+PE +
Sbjct: 653 KLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETS 712
Query: 938 VSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAEK 759
VSHIPVHQDGSCNGLQHYAALG+DKLGA +VNLVAG++PADVYS IA RVL+IM RDA++
Sbjct: 713 VSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQR 772
Query: 758 GPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTELF 579
P+ P+A+ A++L++QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER +ADD+ELF
Sbjct: 773 DPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELF 832
Query: 578 RASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKLG 399
A+CYAAK TLTALGEMF+AAR IMTWLG+CAK+IASEN PVRWTTPLGLPVVQPY+K+G
Sbjct: 833 GAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIG 892
Query: 398 SHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGVH 219
H++KTSLQ+LTL+RET+KVMV+RQRTAFPPNF+HSLDGSHMMMTAVAC+RAGLNFAGVH
Sbjct: 893 RHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVH 952
Query: 218 DSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLNDV 39
DSYWTHACDVD++NRILREKFVELYE PILE LLESFQ S+PTL FPPLPERGDF++ DV
Sbjct: 953 DSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDV 1012
Query: 38 LESPYFFN 15
LESPYFFN
Sbjct: 1013 LESPYFFN 1020
>gb|EMJ26582.1| hypothetical protein PRUPE_ppa000780mg [Prunus persica]
Length = 1006
Score = 1299 bits (3362), Expect = 0.0
Identities = 654/1026 (63%), Positives = 796/1026 (77%), Gaps = 31/1026 (3%)
Frame = -2
Query: 2999 RDTRRSIARKSACISPRGVRFYSGRPLSIPSISGFHHGFLQKSSFSEKNRVWDLEETLEN 2820
R+ + +A + +S + + G P S I F Q+SSF +K R ++ + + N
Sbjct: 3 RNLAKQVASRKTNLSSQS---HFGSPSSTSMI------FSQESSFLDKARHFEARKCINN 53
Query: 2819 R--VGGFFQNGESMP----LAGCAC--PSIAADL-------KTHASVAEMAASTDTDEET 2685
R V GF Q G+ L C+ PS + K +ASVAE ASTD +E++
Sbjct: 54 RILVMGFRQVGDMASQKEELGRCSSLNPSYPYGISGFCNYAKGYASVAEAIASTDGEEDS 113
Query: 2684 SSLLNFRSILDRIGKFEVTLECEEDKSFSRFRSARLFQHYSKLVGGMSESNYCKLRRRQI 2505
S + +L+ + + +E F+ ++V GM Y LR+RQI
Sbjct: 114 SGSEEIQEMLEDLIRENNMVESH-------------FKQPKRVVVGMGVGKYNLLRKRQI 160
Query: 2504 QIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFEPLRDRIAREQEKCREKGN 2325
++E+EAW++A KEY+E+L DMC++KLAPNLP++KSL LGWFEPLRD IA +Q+ C++ +
Sbjct: 161 KLETEAWQEAAKEYQELLADMCEQKLAPNLPYIKSLFLGWFEPLRDAIAADQDSCKQPNS 220
Query: 2324 RASHAPYFNQLPADKMAVITMHKMISLLMSSSES-RCVPVVQAACKIGDAIEHEGRIQWI 2148
R SHAPYF+ LPADKMAVITMHK++ LLM+++ V VVQAAC IG+AIEHE RI
Sbjct: 221 RQSHAPYFDHLPADKMAVITMHKLMGLLMTNNGGIGSVRVVQAACAIGEAIEHEVRIHRF 280
Query: 2147 LEXXXXXXXXXXK---SDETGVSVNEE------------QELIRKKVTNLMKRQKHHIVR 2013
LE K +D V++ +E QE +RKKV L+KRQK VR
Sbjct: 281 LEKTKKKKNTIDKKAEADSVPVTIEQEKLADEQEKLTKEQERLRKKVNKLIKRQKMQQVR 340
Query: 2012 KMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVKTII 1833
++K Q+D +PWG++A KVG RLI+LL++TAYIQ PV Q PPD+RPAF H +KTI
Sbjct: 341 GIVKEQEDLKPWGQEAHVKVGCRLIQLLMDTAYIQPPVDQIGDGPPDIRPAFVHNLKTIT 400
Query: 1832 KEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPSYVM 1653
++ + SRR+GVIECDP++ +++TA HM++PYMPMLVPP+ WTGYDRGA+LFLPSYVM
Sbjct: 401 RDTQKTSRRYGVIECDPIVRKGMEKTARHMVMPYMPMLVPPINWTGYDRGAYLFLPSYVM 460
Query: 1652 RTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGGLVD 1473
RTHG+K+QRE VKR PR+Q++ +FEALDTLG+T+WRVNK+VL +I+ IW++GGRL LVD
Sbjct: 461 RTHGAKQQREVVKRTPRKQLEPVFEALDTLGSTKWRVNKRVLGVIDRIWASGGRLADLVD 520
Query: 1472 REDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKGFYY 1293
REDVPLPE+PDTEDE E+R KENSERHS RCD+ELKLA +RKMK+E+GFYY
Sbjct: 521 REDVPLPEEPDTEDEAEIRKWKWKLKAAKKENSERHSQRCDIELKLAASRKMKDEEGFYY 580
Query: 1292 PHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGVDKL 1113
PHNLDFRGRAYPMHPYLNHLGSD+CRG+LEF+EGR LGKSGLRWLKIHLANLYA GVDKL
Sbjct: 581 PHNLDFRGRAYPMHPYLNHLGSDMCRGILEFSEGRHLGKSGLRWLKIHLANLYAGGVDKL 640
Query: 1112 SHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPENTVS 933
S D R AFTENH++++FDSAD+PLEGRRWWLGAEDPFQ LA CINL EALRS +PE T+S
Sbjct: 641 SFDDRAAFTENHVDEIFDSADRPLEGRRWWLGAEDPFQCLAACINLCEALRSPSPETTIS 700
Query: 932 HIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAEKGP 753
++PVHQDGSCNGLQHYAALG+DKLGA +VNLV GD+PADVYS IA RVL+IM DAEK P
Sbjct: 701 YMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDKPADVYSGIAARVLDIMRNDAEKDP 760
Query: 752 SINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTELFRA 573
+ NPNALHA+LLI+QVDRKLVKQTVMTSVYGVTY+GAR+QIKRRLKER +ADDT LF A
Sbjct: 761 ATNPNALHARLLINQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERGSIADDTALFAA 820
Query: 572 SCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKLGSH 393
+CYAA+TTLTALGEMF+AAR IM+WLG+CAKVIASEN PVRW TPLGLPVVQPY++LG H
Sbjct: 821 ACYAARTTLTALGEMFEAARSIMSWLGECAKVIASENQPVRWITPLGLPVVQPYRQLGRH 880
Query: 392 MVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGVHDS 213
++KTSLQVLTL+RETDKVMV+RQRTAFPPNFVHSLDGSHMMMTAVAC++AGLNFAGVHDS
Sbjct: 881 LIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKAGLNFAGVHDS 940
Query: 212 YWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLNDVLE 33
YWTHACD+D+MNRILREKFVELYE PILENLLE FQQSFPTL+FPPLP+RGDF+L DVLE
Sbjct: 941 YWTHACDIDEMNRILREKFVELYEAPILENLLEGFQQSFPTLTFPPLPDRGDFDLRDVLE 1000
Query: 32 SPYFFN 15
SPYFFN
Sbjct: 1001 SPYFFN 1006
>tpg|DAA63638.1| TPA: RNA polymerase T phage-like 1 [Zea mays]
Length = 975
Score = 1299 bits (3362), Expect = 0.0
Identities = 630/866 (72%), Positives = 735/866 (84%), Gaps = 4/866 (0%)
Frame = -2
Query: 2600 SRFRSARLFQHYSKLVG--GMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKL 2427
SR R + +H L GM+ Y LRRRQI+IE+EAWEQA EY+E+L DMC++KL
Sbjct: 110 SRHRRSGRGRHAEVLAAEHGMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKL 169
Query: 2426 APNLPFMKSLLLGWFEPLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMIS 2247
APNLP++KSL LGWFEPLRD+IA EQE + G+RASH P+F+ LPAD MAVITMHK++
Sbjct: 170 APNLPYVKSLFLGWFEPLRDQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMG 229
Query: 2246 LLMSSSESRCVPVVQAACKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGVSVNE--EQ 2073
LLM+ S V V+QAAC+IG+AIEHE RI LE +++E N EQ
Sbjct: 230 LLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAIEQ 289
Query: 2072 ELIRKKVTNLMKRQKHHIVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQ 1893
+ +RKKVT+LMK+QK VR ++K QD SRPWG+DA AKVGSRLI+L I TA+IQ P SQ
Sbjct: 290 QRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQ 349
Query: 1892 SAADPPDLRPAFRHYVKTIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVP 1713
S+ PD+RPAFRH ++T++KE++ SRR+GVI+CDPL+ LDRTA HM+IPYMPML+P
Sbjct: 350 SSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIP 409
Query: 1712 PLKWTGYDRGAHLFLPSYVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKK 1533
P+ WTGYD+GAHLFLPSYVMRTHG+++QR+AVKRAPREQMQ +FEAL+TLG+T+WRVNK+
Sbjct: 410 PICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKR 469
Query: 1532 VLNIINTIWSNGGRLGGLVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRC 1353
VL+I++ IWSNGGRL LVDR DVP+PEKPDTEDE L+ K+NSERHS RC
Sbjct: 470 VLSIVDRIWSNGGRLADLVDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRC 529
Query: 1352 DMELKLAVARKMKEEKGFYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKS 1173
D+ELKLAVARKMK+E+GFYYPHNLDFRGRAYPMHPYLNHLGSD+CRGVLEFAEGRPLGKS
Sbjct: 530 DVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKS 589
Query: 1172 GLRWLKIHLANLYANGVDKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLL 993
GLRWLKIHLANLYA GVDKLS+D R+AF ENHLE++FDSAD+PLEGRRWWLGAEDPFQ L
Sbjct: 590 GLRWLKIHLANLYAAGVDKLSYDGRIAFAENHLEEIFDSADRPLEGRRWWLGAEDPFQCL 649
Query: 992 AVCINLAEALRSSTPENTVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADV 813
AVC+NL EALRSS+PE T+SHIPVHQDGSCNGLQHYAALGKDKLGAI+VNLVAG++PADV
Sbjct: 650 AVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADV 709
Query: 812 YSSIATRVLNIMCRDAEKGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQ 633
Y+ IA RV+ IM DA+K PS+ P+A A+L++DQVDRKLVKQTVMTSVYGVTYIGAREQ
Sbjct: 710 YTGIANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQ 769
Query: 632 IKRRLKERDMMADDTELFRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPV 453
I+RRLKER ++ +D+ELF ASCYAAK TLTALGEMFQAAR IM WLGDCAKVIA EN PV
Sbjct: 770 IRRRLKERGVIPNDSELFGASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPV 829
Query: 452 RWTTPLGLPVVQPYQKLGSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHM 273
RWTTPLGLPVVQPY+KLG H++KTSLQVLTL+RETDKVMV+RQRTAFPPNFVHSLDGSHM
Sbjct: 830 RWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHM 889
Query: 272 MMTAVACQRAGLNFAGVHDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFP 93
MMTAVAC+R GLNFAGVHDSYWTHA DVD MN+ILREKFVELY+ PILENLLESF++SFP
Sbjct: 890 MMTAVACKRQGLNFAGVHDSYWTHASDVDTMNKILREKFVELYDTPILENLLESFEKSFP 949
Query: 92 TLSFPPLPERGDFNLNDVLESPYFFN 15
L FPPLPERGDF++ +VLES YFFN
Sbjct: 950 KLKFPPLPERGDFDMKEVLESTYFFN 975
>dbj|BAB78464.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris] gi|17221595|dbj|BAB78465.1| T7
bacteriophage-type single subunit RNA polymerase
[Nicotiana sylvestris]
Length = 1020
Score = 1296 bits (3353), Expect = 0.0
Identities = 641/968 (66%), Positives = 774/968 (79%), Gaps = 10/968 (1%)
Frame = -2
Query: 2888 GFLQKSSFSEKNRVWDLEE-TLENRVGGFFQNGE--------SMPLAGCACPSIAADLKT 2736
GF Q S F + + L + N V GF GE S PL + K+
Sbjct: 64 GFGQDSIFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLIKNQVNNNFCCRKS 123
Query: 2735 HASVAEMAASTDTDEETSSLLNFRSILDRIGKFEVTLECEEDKSFS-RFRSARLFQHYSK 2559
+ASVAE A + TD E S++D + + L+ EE K F+ R R R+
Sbjct: 124 YASVAEAVAVSSTDAEEDV-----SVVDEVHELLTELKKEEKKQFAFRRRKQRM------ 172
Query: 2558 LVGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFE 2379
L GM Y L+RRQ+++E+EAWEQA KEYKE+L DMC++KLAPNLP++KSL LGWFE
Sbjct: 173 LTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWFE 232
Query: 2378 PLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQA 2199
PLRD+IA EQE C + ++A++A YF QLPAD MAVITMHK++ LLM+ + VVQA
Sbjct: 233 PLRDKIAEEQELCSQGKSKAAYAKYFYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQA 292
Query: 2198 ACKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGVSVNEEQELIRKKVTNLMKRQKHHI 2019
A IGDAIE E RI LE K E G V +EQE +RKKVTNLMK+QK
Sbjct: 293 ALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLRA 352
Query: 2018 VRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVKT 1839
V ++++ QDDS+PWG+DA+AKVGSRLI+LL++TAYIQ P +Q A DPPD+ PAF H V+T
Sbjct: 353 VGQIVRRQDDSKPWGQDARAKVGSRLIDLLLQTAYIQPPANQLAVDPPDIPPAFVHSVRT 412
Query: 1838 IIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPSY 1659
+ KE K+ SRR+G+I+CD L++ L+RTA HM+IPYMPMLVPP+KWTGYD+G HL+LPSY
Sbjct: 413 VAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPSY 472
Query: 1658 VMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGGL 1479
VMRTHG+++QREAVKRA R Q+Q +FEALDTLGNT+WR+NK+VL++++ IW+ GGRL L
Sbjct: 473 VMRTHGARQQREAVKRASRNQLQPVFEALDTLGNTKWRINKRVLSVVDRIWAGGGRLADL 532
Query: 1478 VDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKGF 1299
VDR+D PLPE+PDTEDE L KEN ERHS RCD+ELKLAVARKMK+E+ F
Sbjct: 533 VDRDDAPLPEEPDTEDEALLPKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEESF 592
Query: 1298 YYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGVD 1119
+YPHN+DFRGRAYPMHP+LNHLGSDICRGVLEFAEGRPLG+SGLRWLKIHLANL+A GV+
Sbjct: 593 FYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAEGRPLGESGLRWLKIHLANLFAGGVE 652
Query: 1118 KLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPENT 939
KLS + R+ FTENH++D+FDS+DKPLEGRRWWL AEDPFQ LAVCINL+EA+RSS+PE +
Sbjct: 653 KLSLEGRIGFTENHMDDIFDSSDKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPETS 712
Query: 938 VSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAEK 759
VSHIPVHQDGSCNGLQHYAALG+DKLGA +VNLVAG++PA+ YS IA RVL+IM RDA++
Sbjct: 713 VSHIPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPAEAYSGIAARVLDIMKRDAQR 772
Query: 758 GPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTELF 579
P+ P+A+ A++L++QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER +ADD+ELF
Sbjct: 773 DPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSELF 832
Query: 578 RASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKLG 399
A+CYAAK TLTALGEMF+AAR IMTWLG+CAK+IASEN PVRWTTPLGLPVVQPY+K+G
Sbjct: 833 GAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKIG 892
Query: 398 SHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGVH 219
H++KTSLQ+LTL+RET+KVMV+RQRTAFPPNF+HSLDGSHMMMTAVAC+RAGLNFAGVH
Sbjct: 893 RHLIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGVH 952
Query: 218 DSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLNDV 39
DSYWTHACDVD++NRILREKFVELYE PILE LLESFQ S+PTL FPPLPERGDF++ DV
Sbjct: 953 DSYWTHACDVDKLNRILREKFVELYEAPILEKLLESFQTSYPTLLFPPLPERGDFDMRDV 1012
Query: 38 LESPYFFN 15
LESPYFFN
Sbjct: 1013 LESPYFFN 1020
>sp|Q8L6J3.2|RPO2B_TOBAC RecName: Full=DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial; AltName:
Full=NictaRpoT2-tom; AltName: Full=T7 bacteriophage-type
single subunit RNA polymerase 2B; Flags: Precursor
gi|21425665|emb|CAC95020.1| mitochondrial and chloroplast
RNA polymerase [Nicotiana tabacum]
Length = 1021
Score = 1295 bits (3352), Expect = 0.0
Identities = 642/969 (66%), Positives = 774/969 (79%), Gaps = 11/969 (1%)
Frame = -2
Query: 2888 GFLQKSSFSEKNRVWDLEE-TLENRVGGFFQNGESMP---------LAGCACPSIAADLK 2739
GF Q S F + + L + N V GF GE +P L + K
Sbjct: 64 GFGQDSVFKDNTKFRSLIPISCSNIVMGFQNLGEYLPGDEFLSRPLLKNQVNSNDFCCRK 123
Query: 2738 THASVAEMAASTDTDEETSSLLNFRSILDRIGKFEVTLECEEDKSFS-RFRSARLFQHYS 2562
++ASVAE A + TD E S++D + + L+ EE K F+ R R R+
Sbjct: 124 SYASVAEAVAVSSTDAEEDV-----SVVDEVQELLTELKKEEKKQFAFRRRKQRM----- 173
Query: 2561 KLVGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWF 2382
L GM Y L+RRQ+++E+EAWEQA KEYKE+L DMC++KLAPNLP++KSL LGWF
Sbjct: 174 -LTSGMGHRKYQTLKRRQVKVETEAWEQAAKEYKELLFDMCEQKLAPNLPYVKSLFLGWF 232
Query: 2381 EPLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQ 2202
EPLRD+IA EQE C + ++A++A Y QLPAD MAVITMHK++ LLM+ + VVQ
Sbjct: 233 EPLRDKIAEEQELCSQGKSKAAYAKYLYQLPADMMAVITMHKLMGLLMTGGDHGTARVVQ 292
Query: 2201 AACKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGVSVNEEQELIRKKVTNLMKRQKHH 2022
AA IGDAIE E RI LE K E G V +EQE +RKKVTNLMK+QK
Sbjct: 293 AALVIGDAIEQEVRIHNFLEKTKKQKAEKDKQKEDGEHVTQEQEKLRKKVTNLMKKQKLR 352
Query: 2021 IVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVK 1842
V ++++ QDDS+PWG+DA+AKVGSRLIELL++TAYIQ P +Q A DPPD+RPAF H V+
Sbjct: 353 AVGQIVRRQDDSKPWGQDAKAKVGSRLIELLLQTAYIQPPANQLAVDPPDIRPAFLHSVR 412
Query: 1841 TIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPS 1662
T+ KE K+ SRR+G+I+CD L++ L+RTA HM+IPYMPMLVPP+KWTGYD+G HL+LPS
Sbjct: 413 TVAKETKSASRRYGIIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLPS 472
Query: 1661 YVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGG 1482
YVMRTHG+++QREAVKRA R Q+Q +FEALDTLG+T+WR+NK+VL++I+ IW+ GGRL
Sbjct: 473 YVMRTHGARQQREAVKRASRNQLQPVFEALDTLGSTKWRINKRVLSVIDRIWAGGGRLAD 532
Query: 1481 LVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKG 1302
LVDR+D PLPE+PDTEDE KEN ERHS RCD+ELKLAVARKMK+E+G
Sbjct: 533 LVDRDDAPLPEEPDTEDEALRTKWRWKVKSVKKENRERHSQRCDIELKLAVARKMKDEEG 592
Query: 1301 FYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGV 1122
F+YPHN+DFRGRAYPMHP+LNHLGSDICRGVL FAEGRPLG+SGLRWLKIHLANL+A GV
Sbjct: 593 FFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLVFAEGRPLGESGLRWLKIHLANLFAGGV 652
Query: 1121 DKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPEN 942
+KLS + R+AFTENH++D+FDSADKPLEGRRWWL AEDPFQ LAVCINL+EA+RSS+PE
Sbjct: 653 EKLSLEGRIAFTENHMDDIFDSADKPLEGRRWWLNAEDPFQCLAVCINLSEAVRSSSPET 712
Query: 941 TVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAE 762
++SHIPVHQDGSCNGLQHYAALG+D+LGA +VNLVAG++PADVYS IA RVL+IM RDA+
Sbjct: 713 SISHIPVHQDGSCNGLQHYAALGRDELGAAAVNLVAGEKPADVYSGIAARVLDIMKRDAQ 772
Query: 761 KGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTEL 582
+ P+ P+A+ A+ L++QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER +ADD+EL
Sbjct: 773 RDPAEFPDAVRARALVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDSEL 832
Query: 581 FRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKL 402
F A+CYAAK TLTALGEMF+AAR IMTWLG+CAK+IASEN PVRWTTPLGLPVVQPY+K+
Sbjct: 833 FGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRKI 892
Query: 401 GSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGV 222
G H++KTSLQ+LTL++ET+KVMV+RQRTAFPPNF+HSLDGSHMMMTAVAC+RAGLNFAGV
Sbjct: 893 GRHLIKTSLQILTLQQETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAGV 952
Query: 221 HDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLND 42
HDSYWTHACDVD++NRILREKFVELYE PILE LLESFQ S+PTL FPPLPERGDF+L D
Sbjct: 953 HDSYWTHACDVDKLNRILREKFVELYETPILEKLLESFQTSYPTLLFPPLPERGDFDLRD 1012
Query: 41 VLESPYFFN 15
VLESPYFFN
Sbjct: 1013 VLESPYFFN 1021
>ref|NP_001104931.1| RNA polymerase T phage-like 1 [Zea mays]
gi|4559304|gb|AAD22976.1|AF127021_1 T7-like RNA
polymerase [Zea mays]
Length = 975
Score = 1293 bits (3346), Expect = 0.0
Identities = 628/866 (72%), Positives = 734/866 (84%), Gaps = 4/866 (0%)
Frame = -2
Query: 2600 SRFRSARLFQHYSKLVG--GMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKL 2427
SR R + +H L GM+ Y LRRRQI+IE+EAWEQA EY+E+L DMC++KL
Sbjct: 110 SRHRRSGRGRHAEVLAAEHGMTYHRYTSLRRRQIRIETEAWEQAANEYRELLADMCEQKL 169
Query: 2426 APNLPFMKSLLLGWFEPLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMIS 2247
APNLP++KSL LGWFEPLRD+IA EQE + G+RASH P+F+ LPAD MAVITMHK++
Sbjct: 170 APNLPYVKSLFLGWFEPLRDQIATEQELVADPGSRASHGPFFSMLPADMMAVITMHKLMG 229
Query: 2246 LLMSSSESRCVPVVQAACKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGVSVN--EEQ 2073
LLM+ S V V+QAAC+IG+AIEHE RI LE +++E N EQ
Sbjct: 230 LLMTGSGDGSVRVIQAACQIGEAIEHEVRINRFLEKTRKKNNKEMENEEEAGDTNIAVEQ 289
Query: 2072 ELIRKKVTNLMKRQKHHIVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQ 1893
+ +RKKVT+LMK+QK VR ++K QD SRPWG+DA AKVGSRLI+L I TA+IQ P SQ
Sbjct: 290 QRLRKKVTDLMKKQKLRQVRNIVKNQDKSRPWGQDAHAKVGSRLIDLFIGTAHIQPPASQ 349
Query: 1892 SAADPPDLRPAFRHYVKTIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVP 1713
S+ PD+RPAFRH ++T++KE++ SRR+GVI+CDPL+ LDRTA HM+IPYMPML+P
Sbjct: 350 SSDGLPDIRPAFRHEMRTMVKEQQKSSRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIP 409
Query: 1712 PLKWTGYDRGAHLFLPSYVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKK 1533
P+ WTGYD+GAHLFLPSYVMRTHG+++QR+AVKRAPREQMQ +FEAL+TLG+T+WRVNK+
Sbjct: 410 PICWTGYDKGAHLFLPSYVMRTHGARQQRDAVKRAPREQMQFVFEALNTLGSTKWRVNKR 469
Query: 1532 VLNIINTIWSNGGRLGGLVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRC 1353
VL+I++ IWSNGGRL LVDR DVP+PEKPDTEDE L+ K+NSERHS RC
Sbjct: 470 VLSIVDRIWSNGGRLADLVDRTDVPVPEKPDTEDETLLKNWKWHLRAAKKKNSERHSQRC 529
Query: 1352 DMELKLAVARKMKEEKGFYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKS 1173
D+ELKLAVARKMK+E+GFYYPHNLDFRGRAYPMHPYLNHLGSD+CRGVLEFAEGRPLGKS
Sbjct: 530 DVELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKS 589
Query: 1172 GLRWLKIHLANLYANGVDKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLL 993
GLRWLKIHLANLYA GVDKLS+D R+AF ENHLE++FDSAD+PLEGRRW LGAEDPFQ L
Sbjct: 590 GLRWLKIHLANLYAAGVDKLSYDGRIAFAENHLEEIFDSADRPLEGRRWRLGAEDPFQCL 649
Query: 992 AVCINLAEALRSSTPENTVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADV 813
AVC+NL EALRSS+PE T+SHIPVHQDGSCNGLQHYAALGKDKLGAI+VNLVAG++PADV
Sbjct: 650 AVCMNLTEALRSSSPETTISHIPVHQDGSCNGLQHYAALGKDKLGAIAVNLVAGEKPADV 709
Query: 812 YSSIATRVLNIMCRDAEKGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQ 633
Y+ IA RV+ IM DA+K PS+ P+A A+L++DQVDRKLVKQTVMTSVYGVTYIGAREQ
Sbjct: 710 YTGIANRVMEIMRMDAQKDPSVEPDAARARLIVDQVDRKLVKQTVMTSVYGVTYIGAREQ 769
Query: 632 IKRRLKERDMMADDTELFRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPV 453
I+RRLKER ++ +D+ELF ASCYAAK TLTALGEMFQAAR IM WLGDCAKVIA EN PV
Sbjct: 770 IRRRLKERGVIPNDSELFGASCYAAKVTLTALGEMFQAARSIMNWLGDCAKVIACENEPV 829
Query: 452 RWTTPLGLPVVQPYQKLGSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHM 273
RWTTPLGLPVVQPY+KLG H++KTSLQVLTL+RETDKVMV+RQ+TAFPPNFVHSLDGSHM
Sbjct: 830 RWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQKTAFPPNFVHSLDGSHM 889
Query: 272 MMTAVACQRAGLNFAGVHDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFP 93
MMTAVAC+R GLNFAGVHDSYWTHA DVD MN+ILREKFVELY+ PILENLLESF++SFP
Sbjct: 890 MMTAVACKRQGLNFAGVHDSYWTHASDVDTMNKILREKFVELYDTPILENLLESFEKSFP 949
Query: 92 TLSFPPLPERGDFNLNDVLESPYFFN 15
L FPPLPERGDF++ +VLES YFFN
Sbjct: 950 KLKFPPLPERGDFDMKEVLESTYFFN 975
>gb|EOY01553.1| DNA-directed RNA polymerase isoform 1 [Theobroma cacao]
gi|508709657|gb|EOY01554.1| DNA-directed RNA polymerase
isoform 1 [Theobroma cacao]
Length = 996
Score = 1287 bits (3330), Expect = 0.0
Identities = 635/919 (69%), Positives = 752/919 (81%), Gaps = 8/919 (0%)
Frame = -2
Query: 2747 DLKTHASVAEMAASTDTDEETSSLLNFRSILDRIGKFEVTLECEEDKSFSRFRSARLFQH 2568
+LK +AS AE ST+ D S ++ +++ + + E+K S +
Sbjct: 95 NLKGYASAAEAVISTEEDMSGSEEIH--ELMEAMAR--------EEKKMSFLVQPK---- 140
Query: 2567 YSKLVGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLG 2388
K+ GM + Y L++RQI+IE+EAWE+A KEY+E+L DMC+ KLAPNLP++KSL LG
Sbjct: 141 --KVAEGMGVAKYNTLKKRQIKIETEAWEEAAKEYQELLMDMCEHKLAPNLPYIKSLFLG 198
Query: 2387 WFEPLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRC-VP 2211
WFEPLRD I EQE C+E R SHA YFN+L AD MAV+TMHK++ LLM+++ +
Sbjct: 199 WFEPLRDSIVGEQELCKENC-RISHAAYFNELSADMMAVVTMHKLMGLLMTNTAGTGGIR 257
Query: 2210 VVQAACKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGVSVN-------EEQELIRKKV 2052
VVQAAC+IG+AIEHE +IQ L K D V ++QE +RKKV
Sbjct: 258 VVQAACQIGEAIEHEAKIQSFLGKTKKKKTTDKKPDGESEPVTNKQEKLVKDQEKLRKKV 317
Query: 2051 TNLMKRQKHHIVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPD 1872
T L+K+QK H VRK++KG D S+ WG++A KVG RLI+LLIE AYIQ PV Q PPD
Sbjct: 318 TQLLKKQKVHQVRKIVKGHDTSKSWGQEAHVKVGCRLIQLLIENAYIQPPVDQLGDCPPD 377
Query: 1871 LRPAFRHYVKTIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGY 1692
+RPAF H +KTI K+ SRR+GVIECD L+ L++TA HM+IPYMPMLVPP WTGY
Sbjct: 378 IRPAFVHSLKTITKDGNKGSRRYGVIECDLLVRKGLEKTARHMVIPYMPMLVPPQNWTGY 437
Query: 1691 DRGAHLFLPSYVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINT 1512
DRGA+LFLPSYVMRTHG+K+QRE VKR PR+Q++ IFEALDTLGNT+WR+NK+VL +++
Sbjct: 438 DRGAYLFLPSYVMRTHGAKQQRETVKRTPRKQLEPIFEALDTLGNTKWRINKRVLGVVDR 497
Query: 1511 IWSNGGRLGGLVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLA 1332
+W+NGGR+ LVDREDVPLPEKPDTEDE E++ K+N+ERHS RCD+ELKLA
Sbjct: 498 LWANGGRVASLVDREDVPLPEKPDTEDEAEIQKWKWKVKAANKQNNERHSLRCDVELKLA 557
Query: 1331 VARKMKEEKGFYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKI 1152
VARKM++E GFYYPHNLDFRGRAYPMHPYLNHLGSD+CRGVLEFAEGRPLGKSGLRWLKI
Sbjct: 558 VARKMRDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFAEGRPLGKSGLRWLKI 617
Query: 1151 HLANLYANGVDKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLA 972
HLANLYA GVDKLS++ R+AFTENHL+D+FDSAD+PLEGRRWWL AEDPFQ LA CINL+
Sbjct: 618 HLANLYAGGVDKLSYEGRIAFTENHLDDIFDSADRPLEGRRWWLSAEDPFQCLAACINLS 677
Query: 971 EALRSSTPENTVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATR 792
EALRSS+PE T+SH+PVHQDGSCNGLQHYAALG+DKLGA SVNLVAG++PADVYS IA R
Sbjct: 678 EALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAASVNLVAGEKPADVYSGIAAR 737
Query: 791 VLNIMCRDAEKGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKE 612
V++IM RDAEK P+INP+ALHA+LLI+QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKE
Sbjct: 738 VVDIMRRDAEKDPAINPHALHARLLINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 797
Query: 611 RDMMADDTELFRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLG 432
R +ADDTE+F ASCYAA+TTLTALGEMFQAAR IM WLG+CAKVI+SEN PVRW TPLG
Sbjct: 798 RCAIADDTEMFVASCYAARTTLTALGEMFQAARSIMNWLGECAKVISSENQPVRWVTPLG 857
Query: 431 LPVVQPYQKLGSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVAC 252
LPVVQPY++LG H++KTSLQVLTL+RETDKVM +RQRTAFPPNFVHSLDGSHMMMTAVAC
Sbjct: 858 LPVVQPYRQLGRHLIKTSLQVLTLQRETDKVMAKRQRTAFPPNFVHSLDGSHMMMTAVAC 917
Query: 251 QRAGLNFAGVHDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPL 72
++AGLNFAGVHDSYWTHACDVD+MNRILREKFVELYE PILENLLESFQ+SFP+L+FPPL
Sbjct: 918 KKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAPILENLLESFQKSFPSLNFPPL 977
Query: 71 PERGDFNLNDVLESPYFFN 15
PERGDF+L +VLESPYFFN
Sbjct: 978 PERGDFDLREVLESPYFFN 996
>ref|XP_006430988.1| hypothetical protein CICLE_v10010966mg [Citrus clementina]
gi|557533045|gb|ESR44228.1| hypothetical protein
CICLE_v10010966mg [Citrus clementina]
Length = 1030
Score = 1283 bits (3319), Expect = 0.0
Identities = 630/910 (69%), Positives = 743/910 (81%), Gaps = 3/910 (0%)
Frame = -2
Query: 2735 HASVAEMAASTDTDEETSSLLNFRSILDRIGKFEVTLECEEDKSFSRFRSARLFQHYSKL 2556
+A+VAE +STD +E+ S + + +L + K E E E +R R AR
Sbjct: 132 YATVAEAVSSTDVEEDVSIVEEIQELLQEMKK-EEQREGENGGGRNRRRVAR-------- 182
Query: 2555 VGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFEP 2376
GM Y L+ RQ++IE+EAWEQA EY+E+L DMC++KLAPNLP+MKSL LGWFEP
Sbjct: 183 --GMGSGKYRMLKMRQVKIETEAWEQAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEP 240
Query: 2375 LRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQAA 2196
LRD IA+EQE+CR ++ ++APYF+QLPAD MAVITMHK++ LLM+ E VVQAA
Sbjct: 241 LRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 300
Query: 2195 CKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGV---SVNEEQELIRKKVTNLMKRQKH 2025
C IGDAIE E RI LE K DE G +V EQE +RKKVT+L+K+QK
Sbjct: 301 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 360
Query: 2024 HIVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYV 1845
VR+++KGQDD +PWG+DA+AKVGSR+IELL +TAYIQSP Q PPD+ PAF H +
Sbjct: 361 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLVDAPPDIFPAFTHTL 420
Query: 1844 KTIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLP 1665
+T+ KE K S+++GVIEC+PL+ L+RTA HM+IPYMPMLVPP+KWTGYD+GAH FLP
Sbjct: 421 RTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLP 480
Query: 1664 SYVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLG 1485
SYVMRTHG+K+QR+ VKR P++Q++ +FEALDTLGNT+WRVN +VL++++ IWS GGRL
Sbjct: 481 SYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLA 540
Query: 1484 GLVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEK 1305
LVDR DVPLPEKP+TEDE +LR KEN ERHS RCD+ELKL+VARKMK+E+
Sbjct: 541 DLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 600
Query: 1304 GFYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANG 1125
GFYYPHN+DFRGRAYPMHPYLNHLGSD+CRG+LEFAEGR LGKSGL WLKIHLANLYA G
Sbjct: 601 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 660
Query: 1124 VDKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPE 945
VDKLSH+ R+AFTENHL+D+FDSADKPLEGRRWWL AEDPFQ LAVCINL EALRSS+PE
Sbjct: 661 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 720
Query: 944 NTVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDA 765
+SHIPVHQDGSCNGLQHYAALG+D LGA +VNLVA ++PADVYS IA RVL I+ RDA
Sbjct: 721 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIRRDA 780
Query: 764 EKGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTE 585
++ P++ P+AL AKLL+ QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER ++ E
Sbjct: 781 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 840
Query: 584 LFRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQK 405
LF ASCYAAK TLTALGEMFQAAR IM+WLG+CAK+IASEN PVRWTTPLGLPVVQPY+K
Sbjct: 841 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 900
Query: 404 LGSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAG 225
LG H VKTSLQ+LTL+RET+KVMV+RQRTAFPPNFVHSLDGSHMMMTAVAC++AGL FAG
Sbjct: 901 LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG 960
Query: 224 VHDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLN 45
VHDSYWTHACDVD+MNRILREKFVELYE PILENLL+SFQ+SFP L PPLPERGDF+L
Sbjct: 961 VHDSYWTHACDVDEMNRILREKFVELYEMPILENLLDSFQKSFPKLVLPPLPERGDFDLR 1020
Query: 44 DVLESPYFFN 15
+VL SPYFFN
Sbjct: 1021 EVLGSPYFFN 1030
>ref|XP_006482458.1| PREDICTED: DNA-directed RNA polymerase 2,
chloroplastic/mitochondrial-like [Citrus sinensis]
Length = 1026
Score = 1282 bits (3318), Expect = 0.0
Identities = 629/910 (69%), Positives = 744/910 (81%), Gaps = 3/910 (0%)
Frame = -2
Query: 2735 HASVAEMAASTDTDEETSSLLNFRSILDRIGKFEVTLECEEDKSFSRFRSARLFQHYSKL 2556
+A+VAE +STD +E+ S + + +L + K E + +R R AR
Sbjct: 132 YATVAEAVSSTDVEEDVSIVEEIQELLQEMKK-----EQQSGGGRNRRRVAR-------- 178
Query: 2555 VGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFEP 2376
GM Y L+ RQ++IE+EAWE+A EY+E+L DMC++KLAPNLP+MKSL LGWFEP
Sbjct: 179 --GMGSGKYRMLKMRQVKIETEAWEKAANEYRELLMDMCEQKLAPNLPYMKSLFLGWFEP 236
Query: 2375 LRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQAA 2196
LRD IA+EQE+CR ++ ++APYF+QLPAD MAVITMHK++ LLM+ E VVQAA
Sbjct: 237 LRDAIAKEQERCRMAKHKVAYAPYFDQLPADMMAVITMHKLMGLLMTGGEHGRARVVQAA 296
Query: 2195 CKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGV---SVNEEQELIRKKVTNLMKRQKH 2025
C IGDAIE E RI LE K DE G +V EQE +RKKVT+L+K+QK
Sbjct: 297 CIIGDAIEQEVRIHKFLEKTKKKNETKNKEDEEGDESNTVTTEQEKLRKKVTDLIKKQKL 356
Query: 2024 HIVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYV 1845
VR+++KGQDD +PWG+DA+AKVGSR+IELL +TAYIQSP Q A PPD+ PAF H +
Sbjct: 357 PAVRRIVKGQDDFKPWGQDARAKVGSRVIELLTQTAYIQSPADQLADAPPDIFPAFTHAL 416
Query: 1844 KTIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLP 1665
+T+ KE K S+++GVIEC+PL+ L+RTA HM+IPYMPMLVPP+KWTGYD+GAH FLP
Sbjct: 417 RTVSKETKGGSKKYGVIECNPLVLKGLERTARHMVIPYMPMLVPPVKWTGYDKGAHFFLP 476
Query: 1664 SYVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLG 1485
SYVMRTHG+K+QR+ VKR P++Q++ +FEALDTLGNT+WRVN +VL++++ IWS GGRL
Sbjct: 477 SYVMRTHGAKQQRDTVKRTPKKQLEPVFEALDTLGNTKWRVNNRVLSVLDRIWSCGGRLA 536
Query: 1484 GLVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEK 1305
LVDR DVPLPEKP+TEDE +LR KEN ERHS RCD+ELKL+VARKMK+E+
Sbjct: 537 DLVDRNDVPLPEKPETEDEAQLRKWQWKVRNVKKENRERHSQRCDIELKLSVARKMKDEE 596
Query: 1304 GFYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANG 1125
GFYYPHN+DFRGRAYPMHPYLNHLGSD+CRG+LEFAEGR LGKSGL WLKIHLANLYA G
Sbjct: 597 GFYYPHNVDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRTLGKSGLHWLKIHLANLYAGG 656
Query: 1124 VDKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPE 945
VDKLSH+ R+AFTENHL+D+FDSADKPLEGRRWWL AEDPFQ LAVCINL EALRSS+PE
Sbjct: 657 VDKLSHEGRLAFTENHLDDIFDSADKPLEGRRWWLKAEDPFQCLAVCINLTEALRSSSPE 716
Query: 944 NTVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDA 765
+SHIPVHQDGSCNGLQHYAALG+D LGA +VNLVA ++PADVYS IA RVL I+ RDA
Sbjct: 717 TFISHIPVHQDGSCNGLQHYAALGRDTLGAAAVNLVAREKPADVYSGIAARVLVIIQRDA 776
Query: 764 EKGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTE 585
++ P++ P+AL AKLL+ QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER ++ E
Sbjct: 777 QRDPAVFPDALRAKLLLSQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAPMEEAE 836
Query: 584 LFRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQK 405
LF ASCYAAK TLTALGEMFQAAR IM+WLG+CAK+IASEN PVRWTTPLGLPVVQPY+K
Sbjct: 837 LFGASCYAAKVTLTALGEMFQAARGIMSWLGECAKIIASENQPVRWTTPLGLPVVQPYRK 896
Query: 404 LGSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAG 225
LG H VKTSLQ+LTL+RET+KVMV+RQRTAFPPNFVHSLDGSHMMMTAVAC++AGL FAG
Sbjct: 897 LGRHTVKTSLQILTLQRETEKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACRKAGLTFAG 956
Query: 224 VHDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLN 45
VHDSYWTHACDVD+MNRILREKFVELYE PILENLL+SFQ+SFP L FPPLPERGDF+L
Sbjct: 957 VHDSYWTHACDVDEMNRILREKFVELYEMPILENLLDSFQKSFPKLVFPPLPERGDFDLR 1016
Query: 44 DVLESPYFFN 15
+VL SPYFFN
Sbjct: 1017 EVLGSPYFFN 1026
>gb|AAF32492.1|AF091838_1 single-subunit RNA polymerase G [Triticum aestivum]
Length = 1005
Score = 1281 bits (3316), Expect = 0.0
Identities = 616/847 (72%), Positives = 720/847 (85%), Gaps = 2/847 (0%)
Frame = -2
Query: 2549 GMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGWFEPLR 2370
G+ S Y LR+RQI+IE+EAWEQA KEY+E+L DMC+ KLAPNLP++KSL L WFEPLR
Sbjct: 160 GIGYSKYVSLRQRQIRIETEAWEQAAKEYRELLADMCEHKLAPNLPYVKSLFLSWFEPLR 219
Query: 2369 DRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVVQAACK 2190
D+I EQE E+G RASHAPYFN LPAD MAVITMHK++ LLM+ S V V+QAAC+
Sbjct: 220 DQIIAEQELVSERGTRASHAPYFNMLPADMMAVITMHKLMGLLMTGSGDGSVRVIQAACQ 279
Query: 2189 IGDAIEHEGRIQWILEXXXXXXXXXXKS--DETGVSVNEEQELIRKKVTNLMKRQKHHIV 2016
IG+A+EHE RI LE + + +EQE +RKKVT+LMK+QK V
Sbjct: 280 IGEAVEHEVRIHKFLEKTKKKNTKEVDKVVEAVDADIAKEQERLRKKVTDLMKKQKIRQV 339
Query: 2015 RKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYVKTI 1836
R ++K QD +RPWG+DA AKVGSRLIEL IETA+IQ P SQS P++RPAF H ++T+
Sbjct: 340 RHLVKKQDSTRPWGQDAHAKVGSRLIELFIETAHIQPPASQSGDSTPEIRPAFTHEMRTV 399
Query: 1835 IKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLPSYV 1656
+E++ SRR+GVI+CDPL+ LDRTA HM+IPYMPML+PP+ WTGYD+GAHLFLPSYV
Sbjct: 400 AREQRK-SRRYGVIKCDPLVRQGLDRTAKHMVIPYMPMLIPPINWTGYDKGAHLFLPSYV 458
Query: 1655 MRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLGGLV 1476
MRTHG+++QREAVK+AP+EQMQTIFEALD LG+T+WRVNK+VL+I++ IWS+GGRL LV
Sbjct: 459 MRTHGARQQREAVKKAPKEQMQTIFEALDNLGSTKWRVNKEVLSIVDRIWSSGGRLADLV 518
Query: 1475 DREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEKGFY 1296
DR DV LPEKPDTEDE EL+ KENSERHS RCD+ELKLAVARKMKEE GFY
Sbjct: 519 DRADVSLPEKPDTEDEAELKKWRWSMRSAEKENSERHSQRCDVELKLAVARKMKEEAGFY 578
Query: 1295 YPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANGVDK 1116
YPHNLDFRGRAYPMHPYLNHLGSD+CRGVLEF+EGRPLG+SGLRWLKIHLANLY GVDK
Sbjct: 579 YPHNLDFRGRAYPMHPYLNHLGSDLCRGVLEFSEGRPLGESGLRWLKIHLANLYGGGVDK 638
Query: 1115 LSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPENTV 936
LS+D R+AFTENHL+D+FDSA++PLEG+RWWL AEDPFQ LAVC++L EALRS +PE +
Sbjct: 639 LSYDGRIAFTENHLDDIFDSANRPLEGKRWWLEAEDPFQCLAVCMDLNEALRSPSPETVI 698
Query: 935 SHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDAEKG 756
SHIPVHQDGSCNGLQHYAALG+DKLGA++VNLV+G++PADVYS IA RV+ IM RDA+K
Sbjct: 699 SHIPVHQDGSCNGLQHYAALGRDKLGAVAVNLVSGEKPADVYSGIAARVVEIMKRDAQKD 758
Query: 755 PSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTELFR 576
P+ + +A A+LL+DQVDRKLVKQTVMTSVYGVTY+GAREQIKRRLKER ++ADD+ELF
Sbjct: 759 PAKDADAARARLLVDQVDRKLVKQTVMTSVYGVTYVGAREQIKRRLKERGVIADDSELFG 818
Query: 575 ASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQKLGS 396
ASCYAAK TLTALGEMF+AAR IMTWLGDCAKVIA EN PVRWTTPLGLPVVQPY+KLG
Sbjct: 819 ASCYAAKVTLTALGEMFEAARSIMTWLGDCAKVIACENEPVRWTTPLGLPVVQPYRKLGR 878
Query: 395 HMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAGVHD 216
H++KTSLQVLTL+RETDKVMV+RQRTAFPPNFVHSLDGSHMMMTAVAC++ GL FAGVHD
Sbjct: 879 HLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKKQGLYFAGVHD 938
Query: 215 SYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLNDVL 36
SYWTHACDVD MN+ILREKFVELY+ PILENLLESF+ SFP L FPPLPERG+F++ DVL
Sbjct: 939 SYWTHACDVDTMNKILREKFVELYDAPILENLLESFETSFPKLKFPPLPERGNFDMKDVL 998
Query: 35 ESPYFFN 15
+S YFFN
Sbjct: 999 QSTYFFN 1005
>ref|XP_002311418.2| hypothetical protein POPTR_0008s11200g [Populus trichocarpa]
gi|550332836|gb|EEE88785.2| hypothetical protein
POPTR_0008s11200g [Populus trichocarpa]
Length = 988
Score = 1280 bits (3313), Expect = 0.0
Identities = 649/1000 (64%), Positives = 774/1000 (77%), Gaps = 29/1000 (2%)
Frame = -2
Query: 2927 RPLSIPSISGFHHGFLQKSSFSEKNRVWDLEETLEN--------RVGGFFQNGESMPLAG 2772
+ L PS S F + S+F E R D ++ L + ++G F QN +
Sbjct: 12 KQLKFPSNSS---NFFKDSTFIENIRSPDAKKCLNSAFSFLCSRQIGVFPQNDK------ 62
Query: 2771 CACPSIAADL-----------KTHASVAEMAASTDTDE-ETSSLLNFRSILDRIGKFEVT 2628
C S DL K +A+ A DE + S +F+ +++++ K
Sbjct: 63 -LCNSSFGDLTKPFDLSPFFFKGYATAAAADVIPSNDESDLSGSDDFQGLMEQVNKHFQK 121
Query: 2627 LECEEDKSFSRFRSARLFQHYSKLVGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLK 2448
+E +FR K+V GM Y L+RRQI++E+EAWEQA +EY+EML+
Sbjct: 122 ME-------PQFRPQE-----KKMVAGMGIGKYAILKRRQIKMETEAWEQAAQEYQEMLE 169
Query: 2447 DMCDRKLAPNLPFMKSLLLGWFEPLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVI 2268
DMC++KLAPNLP++KSL LGWFEPLRD I EQE C+ + R SH +F+ LPAD MAVI
Sbjct: 170 DMCEQKLAPNLPYVKSLFLGWFEPLRDAIVAEQELCK-RNLRVSHRAHFSDLPADMMAVI 228
Query: 2267 TMHKMISLLMSSSE-SRCVPVVQAACKIGDAIEHEGRIQWILEXXXXXXXXXXK-----S 2106
TMHK++ LLM+ + S + VVQAA +G+AIEHEGRI LE K S
Sbjct: 229 TMHKLMGLLMTGNGGSASIRVVQAASVVGEAIEHEGRIHKFLEKTKKRKNVEAKISEGES 288
Query: 2105 D---ETGVSVNEEQELIRKKVTNLMKRQKHHIVRKMIKGQDDSRPWGKDAQAKVGSRLIE 1935
D E G +++EQE +RKKVT L+K+QK VR+++KG DDSRPWG++ KVGSRLI+
Sbjct: 289 DAAIEEGEKLSKEQEKLRKKVTTLIKKQKVQQVRRIVKGHDDSRPWGQEEHVKVGSRLIQ 348
Query: 1934 LLIETAYIQSPVSQSAADPPDLRPAFRHYVKTIIKEEKNISRRFGVIECDPLIYHCLDRT 1755
L+IETAYIQ P+ Q PPD+RPAF H +KTI K+ + SRR+GVIECDPL+ L+++
Sbjct: 349 LMIETAYIQPPIDQIGDGPPDIRPAFVHTLKTITKDTQKSSRRYGVIECDPLVRKGLEKS 408
Query: 1754 ASHMIIPYMPMLVPPLKWTGYDRGAHLFLPSYVMRTHGSKKQREAVKRAPREQMQTIFEA 1575
A HM+IPYMPMLVPPL WTGYD+GAHLFLPSYVMR HGSK+QR+AVKRA R Q++ +F+A
Sbjct: 409 ARHMVIPYMPMLVPPLNWTGYDQGAHLFLPSYVMRIHGSKQQRDAVKRASRNQLEPVFKA 468
Query: 1574 LDTLGNTRWRVNKKVLNIINTIWSNGGRLGGLVDREDVPLPEKPDTEDEIELRXXXXXXX 1395
LDTLGNT+WR+NK+VL +++ IW++GG L GLVDRED PLPE+P TEDE E+R
Sbjct: 469 LDTLGNTKWRINKRVLVVVDRIWASGGHLAGLVDREDAPLPEEPQTEDEAEIRKWTWKVR 528
Query: 1394 XXXKENSERHSHRCDMELKLAVARKMKEEKGFYYPHNLDFRGRAYPMHPYLNHLGSDICR 1215
KENSERHS RCD+ELKLAVARKMK+E+GFYYPHNLDFRGRAYPMHPYLNHLGSD+CR
Sbjct: 529 SVKKENSERHSQRCDIELKLAVARKMKDEEGFYYPHNLDFRGRAYPMHPYLNHLGSDVCR 588
Query: 1214 GVLEFAEGRPLGKSGLRWLKIHLANLYANGVDKLSHDARVAFTENHLEDVFDSADKPLEG 1035
G+LEFAEGRPLGKSGLRWLKIHLANLYA GVDKLS+D R++FTENHL+D+FDSAD+PLEG
Sbjct: 589 GILEFAEGRPLGKSGLRWLKIHLANLYAGGVDKLSYDGRISFTENHLDDIFDSADQPLEG 648
Query: 1034 RRWWLGAEDPFQLLAVCINLAEALRSSTPENTVSHIPVHQDGSCNGLQHYAALGKDKLGA 855
RRWWLGAEDPFQ LA CINL+EALRS +PE SH PVHQDGSCNGLQHYAALG+DKLGA
Sbjct: 649 RRWWLGAEDPFQCLAACINLSEALRSPSPETATSHTPVHQDGSCNGLQHYAALGRDKLGA 708
Query: 854 ISVNLVAGDEPADVYSSIATRVLNIMCRDAEKGPSINPNALHAKLLIDQVDRKLVKQTVM 675
+VNLV G++PADVYS IATRVL+IM RDAEK P+INPN++HAKLL++QVDRKLVKQTVM
Sbjct: 709 AAVNLVGGEKPADVYSGIATRVLDIMQRDAEKDPAINPNSVHAKLLVNQVDRKLVKQTVM 768
Query: 674 TSVYGVTYIGAREQIKRRLKERDMMADDTELFRASCYAAKTTLTALGEMFQAARDIMTWL 495
TSVYGVTYIGAR+QIKRRLKER ++ADD +L+ A+CYAAKTTL AL EMF+ AR IM WL
Sbjct: 769 TSVYGVTYIGARDQIKRRLKERCIIADDPQLYSAACYAAKTTLMALEEMFEGARGIMAWL 828
Query: 494 GDCAKVIASENHPVRWTTPLGLPVVQPYQKLGSHMVKTSLQVLTLRRETDKVMVRRQRTA 315
G+CAKVIASEN PVRWTTPLGLPVVQPY++LG H++KTSLQVLTL+RETDKVMV+RQRTA
Sbjct: 829 GECAKVIASENQPVRWTTPLGLPVVQPYRQLGRHLIKTSLQVLTLKRETDKVMVKRQRTA 888
Query: 314 FPPNFVHSLDGSHMMMTAVACQRAGLNFAGVHDSYWTHACDVDQMNRILREKFVELYEKP 135
FPPNFVHSLDGSHMMMTAVAC+ AGLNFAGVHDSYWTHACDVD+MNRILREKFVELYE P
Sbjct: 889 FPPNFVHSLDGSHMMMTAVACKEAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYEAP 948
Query: 134 ILENLLESFQQSFPTLSFPPLPERGDFNLNDVLESPYFFN 15
ILENLLESFQ SFP L FPPLPERG F+L DVL S YFFN
Sbjct: 949 ILENLLESFQSSFPNLKFPPLPERGVFDLKDVLRSTYFFN 988
>ref|XP_004232127.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase 2B,
chloroplastic/mitochondrial-like [Solanum lycopersicum]
Length = 1022
Score = 1280 bits (3313), Expect = 0.0
Identities = 621/910 (68%), Positives = 748/910 (82%), Gaps = 1/910 (0%)
Frame = -2
Query: 2741 KTHASVAEMAASTDTDEETSSLLNFRSILDRIGKFEVTLECEEDKSFS-RFRSARLFQHY 2565
K +ASVAE A + TD E S++ + + L+ EE K F+ R R R+
Sbjct: 124 KNYASVAEAVAVSSTDAEEDV-----SVVGEVQELLTELKKEEKKQFTFRRRKQRM---- 174
Query: 2564 SKLVGGMSESNYCKLRRRQIQIESEAWEQATKEYKEMLKDMCDRKLAPNLPFMKSLLLGW 2385
L G+ Y L RRQ++IE++AWEQA KEY+E+L DMC++KLAPNLP++KSL LGW
Sbjct: 175 --LTSGIDRRKYPALMRRQVKIETQAWEQAAKEYRELLFDMCEQKLAPNLPYVKSLFLGW 232
Query: 2384 FEPLRDRIAREQEKCREKGNRASHAPYFNQLPADKMAVITMHKMISLLMSSSESRCVPVV 2205
FEPLRD+IA+EQE C + ++A+++ YF+ LPAD MAVITMHK++ LLM+ E V VV
Sbjct: 233 FEPLRDKIAQEQELCIQGKSKAAYSKYFHLLPADMMAVITMHKLMGLLMTGGEHGNVRVV 292
Query: 2204 QAACKIGDAIEHEGRIQWILEXXXXXXXXXXKSDETGVSVNEEQELIRKKVTNLMKRQKH 2025
QAA IGDAIE E RI LE ++ E G EQ+ + KKVT+LMK+QK
Sbjct: 293 QAALTIGDAIEQEVRIHKFLEKTEKHKAEKDRNMEDGEHATLEQKKLHKKVTSLMKKQKL 352
Query: 2024 HIVRKMIKGQDDSRPWGKDAQAKVGSRLIELLIETAYIQSPVSQSAADPPDLRPAFRHYV 1845
V ++++ QDDS+PWG+DA+AKVGSRLIE L++TAYIQSP Q A DPPD+RPAF H
Sbjct: 353 RAVNQIVRSQDDSKPWGQDAKAKVGSRLIEFLLQTAYIQSPADQLAVDPPDIRPAFIHST 412
Query: 1844 KTIIKEEKNISRRFGVIECDPLIYHCLDRTASHMIIPYMPMLVPPLKWTGYDRGAHLFLP 1665
+T+ KE K+ SRR+GVI+CD L++ L+RTA HM+IPYMPMLVPP+KWTGYD+G HL+LP
Sbjct: 413 RTLAKETKSASRRYGVIQCDELVFKGLERTARHMVIPYMPMLVPPVKWTGYDKGGHLYLP 472
Query: 1664 SYVMRTHGSKKQREAVKRAPREQMQTIFEALDTLGNTRWRVNKKVLNIINTIWSNGGRLG 1485
SYVMRTHG+++QREAVKR R Q+Q +FEALDTLG+T+WR+NK+VL++++ IW+ GGRL
Sbjct: 473 SYVMRTHGARQQREAVKRTSRNQLQPVFEALDTLGSTKWRINKRVLSVVDRIWAGGGRLA 532
Query: 1484 GLVDREDVPLPEKPDTEDEIELRXXXXXXXXXXKENSERHSHRCDMELKLAVARKMKEEK 1305
LVDR+DVPLPE+PDTEDE KEN ERHS RCD+ELKLAVA +MK+E+
Sbjct: 533 DLVDRDDVPLPEEPDTEDEAVCTKWRWKVKSVKKENRERHSQRCDIELKLAVAHRMKDEE 592
Query: 1304 GFYYPHNLDFRGRAYPMHPYLNHLGSDICRGVLEFAEGRPLGKSGLRWLKIHLANLYANG 1125
GF+YPHN+DFRGRAYPMHP+LNHLGSDICRGVLEFA GRPLGKSGLRWLKIHLANL+A G
Sbjct: 593 GFFYPHNVDFRGRAYPMHPHLNHLGSDICRGVLEFAAGRPLGKSGLRWLKIHLANLFAGG 652
Query: 1124 VDKLSHDARVAFTENHLEDVFDSADKPLEGRRWWLGAEDPFQLLAVCINLAEALRSSTPE 945
VDKLS D R+AFTE+HL+D+FDSADKPLEGR WWL AEDPFQ LAVCINL+EA+RSS+PE
Sbjct: 653 VDKLSLDGRIAFTESHLDDIFDSADKPLEGRCWWLNAEDPFQCLAVCINLSEAVRSSSPE 712
Query: 944 NTVSHIPVHQDGSCNGLQHYAALGKDKLGAISVNLVAGDEPADVYSSIATRVLNIMCRDA 765
+SH+PVHQDGSCNGLQHYAALG+DKLGA +VNLVAG++PADVYS IA RVL+IM RDA
Sbjct: 713 TVISHVPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEKPADVYSGIAARVLDIMNRDA 772
Query: 764 EKGPSINPNALHAKLLIDQVDRKLVKQTVMTSVYGVTYIGAREQIKRRLKERDMMADDTE 585
++ P+ P+A+ A++L++QVDRKLVKQTVMTSVYGVTYIGAR+QIKRRLKER +ADDTE
Sbjct: 773 QRDPAEFPDAVRARVLVNQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKERGAIADDTE 832
Query: 584 LFRASCYAAKTTLTALGEMFQAARDIMTWLGDCAKVIASENHPVRWTTPLGLPVVQPYQK 405
LF A+CYAAK TLTALGEMF+AAR IMTWLG+CAK+IASEN PVRWTTPLGLPVVQPY+K
Sbjct: 833 LFGAACYAAKVTLTALGEMFEAARSIMTWLGECAKIIASENEPVRWTTPLGLPVVQPYRK 892
Query: 404 LGSHMVKTSLQVLTLRRETDKVMVRRQRTAFPPNFVHSLDGSHMMMTAVACQRAGLNFAG 225
+G H +KTSLQ+LTL+RET+KVMV+RQRTAFPPNF+HSLDGSHMMMTAVAC+RAGLNFAG
Sbjct: 893 IGRHFIKTSLQILTLQRETEKVMVKRQRTAFPPNFIHSLDGSHMMMTAVACRRAGLNFAG 952
Query: 224 VHDSYWTHACDVDQMNRILREKFVELYEKPILENLLESFQQSFPTLSFPPLPERGDFNLN 45
VHDSYWTHACDVD++NRILREKFVELYE PILE LLE FQ S+PTLSFPPLPERGDF+L
Sbjct: 953 VHDSYWTHACDVDKLNRILREKFVELYETPILEKLLEGFQVSYPTLSFPPLPERGDFDLR 1012
Query: 44 DVLESPYFFN 15
DV+ESPYFFN
Sbjct: 1013 DVIESPYFFN 1022